assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003591595.1_ASM359159v1	CP022959	Escherichia coli ATCC 8739 chromosome, complete genome	1	1016297-1017059	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no		c2c9_V-U4,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,RT,WYL	Orphan	GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	12,12,12	12	Orphan	c2c9_V-U4,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,RT,WYL	NA,NA	NA|919aa|up_9|CP022959.1_1002890_1005647_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|434aa|up_8|CP022959.1_1005703_1007005_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_7|CP022959.1_1007052_1009287_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_6|CP022959.1_1009364_1009613_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_5|CP022959.1_1009612_1009948_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_4|CP022959.1_1010018_1010810_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_3|CP022959.1_1011037_1012675_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_2|CP022959.1_1012762_1014061_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_1|CP022959.1_1014120_1014993_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|224aa|up_0|CP022959.1_1015286_1015958_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|371aa|down_0|CP022959.1_1017268_1018381_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|493aa|down_1|CP022959.1_1020022_1021501_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_2|CP022959.1_1021527_1022805_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_3|CP022959.1_1023123_1023909_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_4|CP022959.1_1023978_1025433_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|446aa|down_5|CP022959.1_1025526_1026864_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_6|CP022959.1_1026841_1027621_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_7|CP022959.1_1027617_1028478_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_8|CP022959.1_1028625_1029201_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_9|CP022959.1_1029217_1029478_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]
GCA_003591595.1_ASM359159v1	CP022959	Escherichia coli ATCC 8739 chromosome, complete genome	2	1018441-1019384	2,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas3	c2c9_V-U4,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,RT,WYL	Unclear	GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GTTCCCCGCGCCAGCGGGGATAAACCG	29,29,27	0	0	NA	NA	I-E:I-E:I-E	15,15,15	15	Unclear	c2c9_V-U4,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,RT,WYL	NA,NA	NA|434aa|up_9|CP022959.1_1005703_1007005_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_8|CP022959.1_1007052_1009287_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_7|CP022959.1_1009364_1009613_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_6|CP022959.1_1009612_1009948_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_5|CP022959.1_1010018_1010810_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_4|CP022959.1_1011037_1012675_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_3|CP022959.1_1012762_1014061_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_2|CP022959.1_1014120_1014993_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|224aa|up_1|CP022959.1_1015286_1015958_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|371aa|up_0|CP022959.1_1017268_1018381_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|493aa|down_0|CP022959.1_1020022_1021501_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|CP022959.1_1021527_1022805_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|CP022959.1_1023123_1023909_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|CP022959.1_1023978_1025433_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|446aa|down_4|CP022959.1_1025526_1026864_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|CP022959.1_1026841_1027621_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|CP022959.1_1027617_1028478_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|CP022959.1_1028625_1029201_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|CP022959.1_1029217_1029478_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|CP022959.1_1029468_1030740_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCA_003591595.1_ASM359159v1	CP022959	Escherichia coli ATCC 8739 chromosome, complete genome	3	1044934-1046243	3,3,3	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	c2c9_V-U4,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,RT,WYL	Type I-E	GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	19,21,21	21	TypeI-E	c2c9_V-U4,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,RT,WYL	NA,NA	NA|571aa|up_9|CP022959.1_1033297_1035010_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_8|CP022959.1_1035084_1035819_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	cas3|889aa|up_7|CP022959.1_1036177_1038844_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|503aa|up_6|CP022959.1_1039258_1040767_+	PRK09693, PRK09693, Cascade antiviral complex protein; Validated	cse2gr11|161aa|up_5|CP022959.1_1040759_1041242_+	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|364aa|up_4|CP022959.1_1041254_1042346_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|225aa|up_3|CP022959.1_1042348_1043023_+	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas6e|200aa|up_2|CP022959.1_1043009_1043609_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|306aa|up_1|CP022959.1_1043624_1044542_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|95aa|up_0|CP022959.1_1044543_1044828_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|CP022959.1_1046263_1047301_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|CP022959.1_1047552_1048461_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|CP022959.1_1048462_1049890_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|CP022959.1_1049889_1050495_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|CP022959.1_1050544_1050868_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|CP022959.1_1051061_1051373_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|CP022959.1_1051391_1052102_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|CP022959.1_1052101_1052581_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|CP022959.1_1052577_1053627_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|CP022959.1_1053607_1054369_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCA_003591595.1_ASM359159v1	CP022959	Escherichia coli ATCC 8739 chromosome, complete genome	4	1549230-1549347	4	CRISPRCasFinder	no		c2c9_V-U4,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,RT,WYL	Orphan	CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	31	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,RT,WYL	NA|28aa|up_3|CP022959.1_1546881_1546965_+,NA	NA|397aa|up_9|CP022959.1_1539805_1540996_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|420aa|up_8|CP022959.1_1540992_1542252_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_7|CP022959.1_1542241_1543870_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_6|CP022959.1_1544142_1545501_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_5|CP022959.1_1545505_1546582_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|69aa|up_4|CP022959.1_1546623_1546830_-	PRK09729, PRK09729, hypothetical protein; Provisional	NA|28aa|up_3|CP022959.1_1546881_1546965_+	NA	NA|217aa|up_2|CP022959.1_1547044_1547695_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|CP022959.1_1547748_1548003_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|CP022959.1_1548002_1549133_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|CP022959.1_1549366_1551652_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|1251aa|down_1|CP022959.1_1552347_1556100_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|241aa|down_2|CP022959.1_1556227_1556950_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_3|CP022959.1_1557096_1559724_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|563aa|down_4|CP022959.1_1559872_1561561_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_5|CP022959.1_1561557_1562181_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1535aa|down_6|CP022959.1_1562114_1566719_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|550aa|down_7|CP022959.1_1566719_1568369_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|259aa|down_8|CP022959.1_1568373_1569150_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|395aa|down_9|CP022959.1_1569223_1570408_-	PRK05790, PRK05790, putative acyltransferase; Provisional
GCA_003591595.1_ASM359159v1	CP022959	Escherichia coli ATCC 8739 chromosome, complete genome	5	2170123-2170246	5	CRISPRCasFinder	no	DEDDh	c2c9_V-U4,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,RT,WYL	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,RT,WYL	NA,NA|75aa|down_7|CP022959.1_2178828_2179053_-,NA|30aa|down_8|CP022959.1_2179139_2179229_+	NA|471aa|up_9|CP022959.1_2159577_2160990_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|CP022959.1_2161546_2161756_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|CP022959.1_2162210_2162837_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|CP022959.1_2162857_2164960_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|216aa|up_5|CP022959.1_2164963_2165611_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|CP022959.1_2165674_2166343_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|CP022959.1_2166339_2167125_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|CP022959.1_2167128_2167941_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|CP022959.1_2167952_2169557_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|CP022959.1_2169682_2169988_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|CP022959.1_2170560_2171817_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|457aa|down_1|CP022959.1_2171857_2173228_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|CP022959.1_2173442_2174084_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|CP022959.1_2174123_2175272_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|CP022959.1_2175562_2176774_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|CP022959.1_2176886_2177819_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|CP022959.1_2177815_2178841_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|75aa|down_7|CP022959.1_2178828_2179053_-	NA	NA|30aa|down_8|CP022959.1_2179139_2179229_+	NA	NA|390aa|down_9|CP022959.1_2179394_2180564_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]
GCA_003591595.1_ASM359159v1	CP022959	Escherichia coli ATCC 8739 chromosome, complete genome	7	2984504-2984709	7,4,4	CRISPRCasFinder,CRT,PILER-CR	no		c2c9_V-U4,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,RT,WYL	Orphan	TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAACG	28,28,29	0	0	NA	NA	I-F:I-F:I-F	3,3,2	3	Orphan	c2c9_V-U4,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,RT,WYL	NA,NA	NA|431aa|up_9|CP022959.1_2969628_2970921_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|448aa|up_8|CP022959.1_2971011_2972355_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|204aa|up_7|CP022959.1_2972365_2972977_-	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|1330aa|up_6|CP022959.1_2973131_2977121_-	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|165aa|up_5|CP022959.1_2977255_2977750_-	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|322aa|up_4|CP022959.1_2978294_2979260_+	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|589aa|up_3|CP022959.1_2979382_2981149_+	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|574aa|up_2|CP022959.1_2981149_2982871_+	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|235aa|up_1|CP022959.1_2982912_2983617_+	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|73aa|up_0|CP022959.1_2983901_2984120_+	PRK00276, infA, translation initiation factor IF-1; Validated	NA|107aa|down_0|CP022959.1_2988001_2988322_-	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|75aa|down_1|CP022959.1_2988644_2988869_+	PRK09937, PRK09937, cold shock-like protein CspD	NA|649aa|down_2|CP022959.1_2988941_2990888_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|372aa|down_3|CP022959.1_2990884_2992000_-	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|331aa|down_4|CP022959.1_2992114_2993107_+	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|553aa|down_5|CP022959.1_2993103_2994762_-	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|232aa|down_6|CP022959.1_2995186_2995882_+	PRK05420, PRK05420, aquaporin Z; Provisional	NA|300aa|down_7|CP022959.1_2996376_2997276_+	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|551aa|down_8|CP022959.1_2997419_2999072_+	PRK05290, PRK05290, hybrid cluster protein; Provisional	NA|323aa|down_9|CP022959.1_2999083_3000052_+	PRK10684, PRK10684, HCP oxidoreductase, NADH-dependent; Provisional
GCA_003591595.1_ASM359159v1	CP022959	Escherichia coli ATCC 8739 chromosome, complete genome	8	3149620-3149764	8	CRISPRCasFinder	no		c2c9_V-U4,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,RT,WYL	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,RT,WYL	NA|94aa|up_7|CP022959.1_3142970_3143252_+,NA|56aa|up_3|CP022959.1_3146662_3146830_+,NA|70aa|down_9|CP022959.1_3160484_3160694_-	NA|61aa|up_9|CP022959.1_3142613_3142796_+	pfam07026, DUF1317, Protein of unknown function (DUF1317)	NA|64aa|up_8|CP022959.1_3142768_3142960_+	pfam07131, DUF1382, Protein of unknown function (DUF1382)	NA|94aa|up_7|CP022959.1_3142970_3143252_+	NA	NA|74aa|up_6|CP022959.1_3143350_3143572_+	PHA00080, PHA00080, DksA-like zinc finger domain containing protein	NA|84aa|up_5|CP022959.1_3143568_3143820_+	pfam13935, Ead_Ea22, Ead/Ea22-like protein	NA|143aa|up_4|CP022959.1_3146151_3146580_+	pfam10711, DUF2513, Hypothetical protein (DUF2513)	NA|56aa|up_3|CP022959.1_3146662_3146830_+	NA	NA|73aa|up_2|CP022959.1_3146869_3147088_+	pfam07825, Exc, Excisionase-like protein	NA|357aa|up_1|CP022959.1_3147065_3148136_+	cd00800, INT_Lambda_C, C-terminal catalytic domain of Lambda integrase, a tyrosine-based site-specific recombinase	NA|428aa|up_0|CP022959.1_3148270_3149554_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|CP022959.1_3149787_3152049_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|CP022959.1_3152231_3153665_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|CP022959.1_3153740_3154793_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_3|CP022959.1_3154976_3155930_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_4|CP022959.1_3155970_3156966_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_5|CP022959.1_3157120_3157939_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_6|CP022959.1_3157939_3158998_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_7|CP022959.1_3159000_3159690_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_8|CP022959.1_3159689_3160463_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|70aa|down_9|CP022959.1_3160484_3160694_-	NA
GCA_003591595.1_ASM359159v1	CP022959	Escherichia coli ATCC 8739 chromosome, complete genome	9	3548408-3548552	9	CRISPRCasFinder	no		c2c9_V-U4,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,RT,WYL	Orphan	TTTTGTAGGCCTGATAAGACGCGACAAGCGTCGCATCAGGCAT	43	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,RT,WYL	NA,NA|66aa|down_5|CP022959.1_3552229_3552427_-	NA|357aa|up_9|CP022959.1_3533549_3534620_-	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional	NA|194aa|up_8|CP022959.1_3534712_3535294_+	PRK10045, PRK10045, ACP phosphodiesterase	NA|605aa|up_7|CP022959.1_3535298_3537113_-	PRK10785, PRK10785, maltodextrin glucosidase; Provisional	NA|458aa|up_6|CP022959.1_3537271_3538645_-	PRK10580, proY, putative proline-specific permease; Provisional	NA|440aa|up_5|CP022959.1_3538720_3540040_-	PRK15433, PRK15433, branched-chain amino acid transporter carrier protein BrnQ	NA|432aa|up_4|CP022959.1_3540446_3541742_-	PRK11006, phoR, phosphate regulon sensor histidine kinase PhoR	NA|230aa|up_3|CP022959.1_3541799_3542489_-	PRK10161, PRK10161, phosphate response regulator transcription factor PhoB	NA|401aa|up_2|CP022959.1_3542678_3543881_+	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional	NA|1048aa|up_1|CP022959.1_3543877_3547021_+	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional	NA|395aa|up_0|CP022959.1_3547146_3548331_+	PRK10091, PRK10091, MFS transport protein AraJ; Provisional	NA|303aa|down_0|CP022959.1_3548575_3549484_-	PRK09557, PRK09557, fructokinase; Reviewed	NA|304aa|down_1|CP022959.1_3549608_3550520_+	COG2974, RdgC, DNA recombination-dependent growth factor C [DNA replication, recombination, and repair]	NA|94aa|down_2|CP022959.1_3550677_3550959_-	pfam10971, DUF2773, Protein of unknown function (DUF2773)	NA|95aa|down_3|CP022959.1_3551166_3551451_-	PRK10579, PRK10579, pyrimidine/purine nucleoside phosphorylase	NA|226aa|down_4|CP022959.1_3551522_3552200_-	PRK10481, PRK10481, hypothetical protein; Provisional	NA|66aa|down_5|CP022959.1_3552229_3552427_-	NA	NA|64aa|down_6|CP022959.1_3552457_3552649_-	PRK10380, PRK10380, hypothetical protein; Provisional	NA|175aa|down_7|CP022959.1_3552698_3553223_-	PRK03731, aroL, shikimate kinase AroL	NA|155aa|down_8|CP022959.1_3553399_3553864_-	PRK00124, PRK00124, YaiI/YqxD family protein	NA|270aa|down_9|CP022959.1_3553983_3554793_+	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed
GCA_003591595.1_ASM359159v1	CP022959	Escherichia coli ATCC 8739 chromosome, complete genome	10	3711103-3711199	10	CRISPRCasFinder	no		c2c9_V-U4,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,RT,WYL	Orphan	GCCAGCGTCGCATCAGGCATCCGCGCA	27	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,RT,WYL	NA,NA	NA|549aa|up_9|CP022959.1_3701377_3703024_-	PRK07193, fliF, flagellar MS-ring protein; Reviewed	NA|114aa|up_8|CP022959.1_3703028_3703370_-	pfam02049, FliE, Flagellar hook-basal body complex protein FliE	NA|329aa|up_7|CP022959.1_3703384_3704371_-	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]	NA|284aa|up_6|CP022959.1_3704757_3705609_+	pfam01052, FliMN_C, Type III flagellar switch regulator (C-ring) FliN C-term	NA|124aa|up_5|CP022959.1_3705601_3705973_+	TIGR02480, Flagellar_motor_switch_protein_FliN, flagellar motor switch protein FliN	NA|251aa|up_4|CP022959.1_3705969_3706722_+	PRK05699, fliP, flagellar biosynthesis protein FliP; Reviewed	NA|91aa|up_3|CP022959.1_3706724_3706997_+	COG1987, FliQ, Flagellar biosynthesis pathway, component FliQ [Cell motility and secretion / Intracellular trafficking and secretion]	NA|261aa|up_2|CP022959.1_3706998_3707781_+	COG1684, FliR, Flagellar biosynthesis pathway, component FliR [Cell motility and secretion / Intracellular trafficking and secretion]	NA|380aa|up_1|CP022959.1_3707770_3708910_+	PRK05702, flhB, flagellar type III secretion system protein FlhB	NA|698aa|up_0|CP022959.1_3708893_3710987_+	COG1298, FlhA, Flagellar biosynthesis pathway, component FlhA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|166aa|down_0|CP022959.1_3711202_3711700_-	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|250aa|down_1|CP022959.1_3711875_3712625_-	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane]	NA|87aa|down_2|CP022959.1_3712834_3713095_+	COG3077, RelB, DNA-damage-inducible protein J [DNA replication, recombination, and repair]	NA|93aa|down_3|CP022959.1_3713097_3713376_+	COG3041, COG3041, Uncharacterized protein conserved in bacteria [Function unknown]	NA|247aa|down_4|CP022959.1_3713531_3714272_+	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown]	NA|256aa|down_5|CP022959.1_3714242_3715010_-	pfam13230, GATase_4, Glutamine amidotransferases class-II	NA|193aa|down_6|CP022959.1_3715215_3715794_-	PRK00414, gmhA, D-sedoheptulose 7-phosphate isomerase	NA|815aa|down_7|CP022959.1_3716033_3718478_+	PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed	NA|158aa|down_8|CP022959.1_3718520_3718994_-	PRK09993, PRK09993, C-lysozyme inhibitor; Provisional	NA|257aa|down_9|CP022959.1_3719147_3719918_+	PRK10438, PRK10438, C-N hydrolase family amidase; Provisional
