The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP022959	Escherichia coli ATCC 8739 chromosome, complete genome	4746918	45541	55294	4746918	integrase	Enterobacteria_phage(100.0%)	11	46666:46678	55388:55400
AYB95758.1|45541_47875_-	DNA primase	NA	Q7M2A8	Enterobacteria_phage	99.2	0.0e+00
46666:46678	attL	GAATAATCAGCTT	NA	NA	NA	NA
AYB95759.1|47889_48210_-	hypothetical protein	NA	NA	NA	NA	NA
AYB95760.1|48345_48801_-	hypothetical protein	NA	Q7M298	Enterobacteria_phage	99.1	1.6e-64
AYB95761.1|48793_49081_-	Derepression protein	NA	Q7M2A0	Enterobacteria_phage	96.8	3.3e-47
AYB95762.1|49073_49664_-	Ash-like/host cell division inhibitor Icd-like protein	NA	Q7M2A7	Enterobacteria_phage	89.6	1.6e-59
AYB95763.1|49660_49927_-	AlpA family phage regulatory protein	NA	Q7M299	Enterobacteria_phage	98.9	1.4e-44
AYB95764.1|50479_51214_+	glycoprotein 3	NA	Q7M2A2	Enterobacteria_phage	98.4	6.1e-130
AYB95765.1|51210_51456_+	hypothetical protein	NA	Q7M294	Enterobacteria_phage	100.0	1.8e-41
AYB95766.1|51470_52043_+	Polarity suppression protein	NA	Q7M2A1	Enterobacteria_phage	99.5	5.3e-97
AYB95767.1|52322_54089_-	ATP-binding protein	NA	NA	NA	NA	NA
AYB95768.1|54118_55294_-|integrase	integrase	integrase	Q7M297	Enterobacteria_phage	91.2	3.8e-206
55388:55400	attR	AAGCTGATTATTC	NA	NA	NA	NA
>prophage 2
CP022959	Escherichia coli ATCC 8739 chromosome, complete genome	4746918	754055	802867	4746918	protease,integrase,transposase	Emiliania_huxleyi_virus(14.29%)	43	751624:751639	809122:809137
751624:751639	attL	TGCTCCGGCACTGTTT	NA	NA	NA	NA
AYB96423.1|754055_754550_+|protease	hydrogenase 2 maturation protease	protease	NA	NA	NA	NA
AYB96424.1|754542_755031_+	hydrogenase-2 operon protein HybE	NA	NA	NA	NA	NA
AYB96425.1|755023_755365_+	hydrogenase nickel incorporation protein	NA	NA	NA	NA	NA
AYB96426.1|755377_755626_+	hydrogenase-2 operon protein HybG	NA	NA	NA	NA	NA
AYB96427.1|755748_756615_-	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
AYB96428.1|756819_758679_+	bifunctional glutathionylspermidine amidase/glutathionylspermidine synthase	NA	NA	NA	NA	NA
AYB96429.1|758970_760470_+	anion permease	NA	NA	NA	NA	NA
AYB96430.1|760518_761211_-	ATP-binding protein	NA	NA	NA	NA	NA
AYB96431.1|761384_762098_+	hypothetical protein	NA	NA	NA	NA	NA
AYB96432.1|762129_762888_+	hypothetical protein	NA	NA	NA	NA	NA
AYB96433.1|762933_764283_+	hypothetical protein	NA	NA	NA	NA	NA
AYB96434.1|764282_765107_+	hypothetical protein	NA	NA	NA	NA	NA
AYB96435.1|765118_765679_+	YtfJ family protein	NA	NA	NA	NA	NA
AYB96436.1|765709_766780_+	LPS export ABC transporter permease LptF	NA	NA	NA	NA	NA
AYB96437.1|766776_767856_+	LPS export ABC transporter permease LptG	NA	NA	NA	NA	NA
AYB96438.1|767890_769063_-	8-amino-7-oxononanoate synthase	NA	D2TEZ5	Emiliania_huxleyi_virus	30.7	5.5e-40
AYB96439.1|769062_769311_-	phosphopantetheine attachment site family protein	NA	NA	NA	NA	NA
AYB96440.1|769342_770257_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AYB96441.1|770253_771984_-	acyl-CoA synthetase	NA	NA	NA	NA	NA
AYB96442.1|772351_773494_+	N-acetyltransferase	NA	NA	NA	NA	NA
AYB96443.1|773500_774265_-	glc operon transcriptional activator	NA	NA	NA	NA	NA
AYB96444.1|774515_776015_+	glycolate oxidase	NA	NA	NA	NA	NA
AYB96445.1|776014_777067_+	glycolate oxidase subunit GlcE	NA	NA	NA	NA	NA
AYB96446.1|777077_778301_+	glycolate oxidase iron-sulfur subunit	NA	NA	NA	NA	NA
AYB96447.1|778305_778710_+	protein GlcG	NA	NA	NA	NA	NA
AYB96448.1|778731_780903_+	malate synthase G	NA	NA	NA	NA	NA
AYB96449.1|781257_782940_+	glycolate permease GlcA	NA	NA	NA	NA	NA
AYB96450.1|783091_783274_-	hypothetical protein	NA	NA	NA	NA	NA
AYB96451.1|783883_785045_+|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	40.6	4.0e-51
AYB96452.1|785042_785687_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AYB96453.1|786307_787162_-|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	56.2	2.3e-80
AYB96454.1|787158_787443_-|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
AYB96455.1|789866_791018_-|transposase	IS30 family transposase IS30	transposase	W5R8L2	Staphylococcus_phage	35.6	2.0e-42
AYB96456.1|790974_791166_-	hypothetical protein	NA	NA	NA	NA	NA
AYB96457.1|791913_792327_+	hypothetical protein	NA	NA	NA	NA	NA
AYB96458.1|792884_793652_-	Fe(3+) dicitrate transport ATP-binding protein FecE	NA	G3M9Y6	Bacillus_virus	24.8	6.4e-13
AYB96459.1|793652_794609_-	iron-dicitrate transporter subunit FecD	NA	A0A2H4IY97	uncultured_Caudovirales_phage	26.1	1.1e-17
AYB96460.1|794605_795604_-	Fe3+ dicitrate ABC transporter permease	NA	NA	NA	NA	NA
AYB96461.1|795600_796503_-	Fe(3+)-dicitrate ABC transporter substrate-binding protein FecB	NA	NA	NA	NA	NA
AYB96462.1|796547_798872_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
AYB96463.1|798958_799912_-	protein FecR	NA	NA	NA	NA	NA
AYB96464.1|799908_800430_-	RNA polymerase sigma factor FecI	NA	NA	NA	NA	NA
AYB96465.1|801604_802867_-|integrase	integrase	integrase	Q7M297	Enterobacteria_phage	38.1	6.0e-77
809122:809137	attR	TGCTCCGGCACTGTTT	NA	NA	NA	NA
>prophage 3
CP022959	Escherichia coli ATCC 8739 chromosome, complete genome	4746918	1053607	1066967	4746918		Escherichia_phage(44.44%)	11	NA	NA
AYB96691.1|1053607_1054369_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	48.0	3.4e-59
AYB96692.1|1054362_1054989_+	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	49.7	5.7e-36
AYB96693.1|1055128_1056268_+	lipoprotein NlpD	NA	D7RWE0	Brochothrix_phage	35.6	1.7e-06
AYB96694.1|1056330_1057323_+	RNA polymerase sigma factor RpoS	NA	G8CLC7	Synechococcus_phage	37.6	6.1e-32
AYB96695.1|1057416_1058781_-	permease	NA	NA	NA	NA	NA
AYB96696.1|1058869_1059646_-	hypothetical protein	NA	NA	NA	NA	NA
AYB96697.1|1059650_1060289_-	aldolase	NA	A0A077SK32	Escherichia_phage	75.0	1.4e-82
AYB96698.1|1060285_1061548_-	hypothetical protein	NA	A0A077SLJ7	Escherichia_phage	61.4	1.7e-135
AYB96699.1|1061544_1062453_-	NAD(P)-dependent oxidoreductase	NA	A0A077SLF7	Escherichia_phage	76.5	5.1e-118
AYB96700.1|1062648_1063416_+	DeoR/GlpR transcriptional regulator	NA	A0A077SK06	Escherichia_phage	56.7	2.5e-70
AYB96701.1|1064405_1066967_-	DNA mismatch repair protein MutS	NA	E3T5Q7	Cafeteria_roenbergensis_virus	20.6	3.0e-30
>prophage 4
CP022959	Escherichia coli ATCC 8739 chromosome, complete genome	4746918	1146682	1156873	4746918	integrase	Enterobacteria_phage(87.5%)	11	1145673:1145686	1158243:1158256
1145673:1145686	attL	AATATCATTTATCC	NA	NA	NA	NA
AYB96772.1|1146682_1149016_-	DNA primase	NA	Q7M2A8	Enterobacteria_phage	99.1	0.0e+00
AYB96773.1|1149030_1149351_-	hypothetical protein	NA	NA	NA	NA	NA
AYB96774.1|1149486_1149942_-	hypothetical protein	NA	Q7M298	Enterobacteria_phage	99.1	8.0e-64
AYB96775.1|1149934_1150222_-	Derepression protein	NA	Q7M2A0	Enterobacteria_phage	96.8	3.3e-47
AYB96776.1|1150214_1150805_-	Ash-like/host cell division inhibitor Icd-like protein	NA	Q7M2A7	Enterobacteria_phage	89.6	1.6e-59
AYB96777.1|1150801_1151068_-	AlpA family phage regulatory protein	NA	Q7M299	Enterobacteria_phage	100.0	4.9e-45
AYB96778.1|1151619_1152354_+	glycoprotein 3	NA	Q7M2A2	Enterobacteria_phage	97.1	2.6e-128
AYB96779.1|1152350_1152851_+	transactivation protein	NA	NA	NA	NA	NA
AYB96780.1|1152924_1153497_+	Polarity suppression protein	NA	Q7M2A1	Enterobacteria_phage	96.8	8.5e-95
AYB96781.1|1153976_1155680_+	hypothetical protein	NA	NA	NA	NA	NA
AYB96782.1|1155676_1156873_-|integrase	integrase	integrase	A0A1B5FPC6	Escherichia_phage	49.6	6.3e-108
1158243:1158256	attR	GGATAAATGATATT	NA	NA	NA	NA
>prophage 5
CP022959	Escherichia coli ATCC 8739 chromosome, complete genome	4746918	1677583	1685895	4746918		Enterobacteria_phage(83.33%)	9	NA	NA
AYB97246.1|1677583_1678510_+	ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.8	1.7e-23
AYB97247.1|1678514_1679246_+	osmoprotectant uptake system permease	NA	NA	NA	NA	NA
AYB97248.1|1679226_1679334_-	hypothetical protein	NA	NA	NA	NA	NA
AYB97249.1|1679393_1680125_-	transcriptional regulator	NA	Q9EYF2	Enterobacteria_phage	99.5	9.7e-112
AYB97250.1|1680346_1682032_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	99.6	2.5e-304
AYB97251.1|1682028_1682748_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AYB97252.1|1682794_1683265_+	DUF1456 domain-containing protein	NA	Q9EYF4	Enterobacteria_phage	100.0	1.8e-82
AYB97253.1|1683305_1683767_-	hypothetical protein	NA	Q9EYF5	Enterobacteria_phage	98.7	1.6e-75
AYB97254.1|1683891_1685895_-	hypothetical protein	NA	Q9EYF6	Enterobacteria_phage	96.3	0.0e+00
>prophage 6
CP022959	Escherichia coli ATCC 8739 chromosome, complete genome	4746918	1777529	1785043	4746918		Enterobacteria_phage(42.86%)	8	NA	NA
AYB97325.1|1777529_1778924_+	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	31.9	8.3e-19
AYB97326.1|1779081_1780077_+	N-acetyl-alpha-D-glucosaminyl-diphospho-ditrans, octacis-undecaprenol 4-epimerase	NA	A0A1V0QG29	Shearwaterpox_virus	26.3	1.9e-09
AYB97327.1|1780319_1781213_+	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	42.0	7.9e-47
AYB97328.1|1781249_1781513_-	hypothetical protein	NA	NA	NA	NA	NA
AYB97329.1|1781584_1782670_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	54.5	1.0e-101
AYB97330.1|1782669_1783569_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	34.8	7.4e-29
AYB97331.1|1783626_1784505_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	64.1	2.5e-106
AYB97332.1|1784509_1785043_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	52.9	3.4e-45
>prophage 7
CP022959	Escherichia coli ATCC 8739 chromosome, complete genome	4746918	2255990	2310789	4746918	lysis,portal,terminase,head,integrase,transposase,capsid,tail	Enterobacteria_phage(46.0%)	72	2251280:2251295	2283740:2283755
2251280:2251295	attL	CTTTAAGAGATAAAAA	NA	NA	NA	NA
AYB97775.1|2255990_2258417_-	dimethyl sulfoxide reductase subunit A	NA	A0A077SK27	Escherichia_phage	49.2	4.5e-214
AYB97776.1|2258615_2258921_-	hypothetical protein	NA	NA	NA	NA	NA
AYB97777.1|2259028_2259739_+	YnfC family lipoprotein	NA	NA	NA	NA	NA
AYB97778.1|2259741_2260302_-	spermidine N1-acetyltransferase	NA	NA	NA	NA	NA
AYB97779.1|2260336_2260678_-	hypothetical protein	NA	NA	NA	NA	NA
AYB97780.1|2260812_2261139_+	hypothetical protein	NA	A0A218MNG8	uncultured_virus	55.6	9.9e-24
AYB97781.1|2261175_2261364_+	hypothetical protein	NA	NA	NA	NA	NA
AYB97782.1|2261344_2262559_+	starvation-sensing protein RspA	NA	Q6A202	Oenococcus_phage	29.0	1.4e-46
AYB97783.1|2262570_2263590_+	Zn-dependent oxidoreductase	NA	E3SJ82	Synechococcus_phage	26.2	1.3e-16
AYB97784.1|2263647_2263758_+	transporter	NA	NA	NA	NA	NA
AYB97785.1|2263777_2265073_-|integrase	site-specific integrase	integrase	B6DZ48	Enterobacteria_phage	62.1	4.3e-155
AYB97786.1|2265092_2265344_-	DNA-binding protein	NA	S4TND0	Salmonella_phage	50.0	2.2e-15
AYB97787.1|2265416_2267894_-	exonuclease	NA	A0A192Y6E0	Salmonella_phage	56.7	8.5e-59
AYB97788.1|2267986_2268178_-	DUF1482 domain-containing protein	NA	NA	NA	NA	NA
AYB97789.1|2268174_2268363_-	division inhibition protein DicB	NA	NA	NA	NA	NA
AYB97790.1|2268930_2269149_-	hypothetical protein	NA	NA	NA	NA	NA
AYB97791.1|2269178_2269349_-	hypothetical protein	NA	NA	NA	NA	NA
AYB97792.1|2269308_2269464_-	DUF1391 domain-containing protein	NA	M4QQ57	Salicola_phage	53.2	3.0e-07
AYB97793.1|2269630_2270038_-	transcriptional regulator	NA	K7PM82	Enterobacteria_phage	54.7	4.4e-13
AYB97794.1|2270121_2270352_+	division inhibition gene dicB repressor	NA	NA	NA	NA	NA
AYB97795.1|2270335_2270857_+	hypothetical protein	NA	NA	NA	NA	NA
AYB97796.1|2270783_2271803_+	hypothetical protein	NA	U5P0A0	Shigella_phage	60.2	2.4e-55
AYB97797.1|2271843_2272266_+	DUF977 domain-containing protein	NA	A0A0U2QQN3	Escherichia_phage	92.0	4.4e-64
AYB97798.1|2272262_2272619_+	class I SAM-dependent methyltransferase	NA	H9C170	Pectobacterium_phage	69.6	1.6e-38
AYB97799.1|2273771_2273951_+	hypothetical protein	NA	NA	NA	NA	NA
AYB97800.1|2273925_2274108_-	hypothetical protein	NA	Q7Y2Q9	Escherichia_phage	74.5	6.3e-12
AYB97801.1|2274285_2275599_+|transposase	transposase	transposase	NA	NA	NA	NA
AYB97802.1|2276060_2276393_-	protein FlxA	NA	NA	NA	NA	NA
AYB97803.1|2276595_2276901_-	hypothetical protein	NA	NA	NA	NA	NA
AYB97804.1|2276925_2277165_+	antitoxin RelB	NA	A0A2H4JBG1	uncultured_Caudovirales_phage	54.4	1.6e-18
AYB97805.1|2277164_2277452_+	mRNA interferase RelE	NA	A0A2H4JBF4	uncultured_Caudovirales_phage	66.0	1.4e-29
AYB97806.1|2277523_2277679_+	protein HokD	NA	A0A0U2QV81	Escherichia_phage	96.1	1.5e-17
AYB97807.1|2277895_2278147_+	hypothetical protein	NA	NA	NA	NA	NA
AYB97808.1|2278213_2278492_+	hypothetical protein	NA	NA	NA	NA	NA
AYB97809.1|2278493_2279543_+	DUF968 domain-containing protein	NA	A0A291AWV9	Escherichia_phage	57.3	1.3e-112
AYB97810.1|2279556_2280309_+	antitermination protein Q	NA	A0A192Y5X6	Salmonella_phage	92.4	7.1e-134
AYB97811.1|2280730_2280943_-	cold-shock protein CspF	NA	NA	NA	NA	NA
AYB97812.1|2281243_2281459_+	cold-shock protein CspB	NA	A0A1W6JNX5	Morganella_phage	76.5	3.4e-25
AYB97813.1|2282212_2282428_+|lysis	lysis protein S	lysis	A5LH82	Enterobacteria_phage	94.4	1.1e-31
AYB97814.1|2282432_2282744_+	hypothetical protein	NA	K7PGU6	Enterobacteria_phage	64.6	2.0e-26
AYB97815.1|2282740_2283274_+	lysozyme from lambdoid prophage Qin	NA	K7PLY1	Enterobacteria_phage	93.2	6.4e-97
AYB97816.1|2283270_2283768_+	hypothetical protein	NA	A0A291LBG9	Klebsiella_phage	29.5	2.9e-06
2283740:2283755	attR	CTTTAAGAGATAAAAA	NA	NA	NA	NA
AYB97817.1|2284130_2284343_+	cold-shock protein CspI	NA	A0A1W6JNX5	Morganella_phage	74.3	1.2e-22
AYB97818.1|2284353_2284542_+	cold-shock protein	NA	NA	NA	NA	NA
AYC00102.1|2284689_2284845_+	hypothetical protein	NA	NA	NA	NA	NA
AYB97819.1|2285016_2285190_+	protein GnsB	NA	NA	NA	NA	NA
AYB97820.1|2285341_2285752_-	hypothetical protein	NA	C6ZCX4	Enterobacteria_phage	79.4	2.5e-56
AYB97821.1|2285809_2286043_-	DUF3950 domain-containing protein	NA	A0A0K2FIR8	Escherichia_phage	84.1	2.5e-21
AYB97822.1|2286431_2286977_+|terminase	terminase small subunit	terminase	A0A0K2FIG2	Enterobacteria_phage	98.9	1.4e-94
AYB97823.1|2286951_2288877_+|terminase	terminase	terminase	A0A0K2FJ14	Enterobacteria_phage	99.7	0.0e+00
AYB97824.1|2288873_2289080_+|head,tail	Lambda prophage-derived head-to-tail joining protein W	head,tail	A0A2R9YJL2	Escherichia_phage	100.0	5.8e-30
AYB97825.1|2289076_2290678_+|portal	phage portal protein	portal	A0A0K2FJC0	Enterobacteria_phage	98.7	1.2e-308
AYB97826.1|2290658_2291978_+|capsid	capsid assembly protein	capsid	A0A0K2FI53	Enterobacteria_phage	98.9	1.3e-234
AYB97827.1|2291987_2292320_+|head	head decoration protein	head	A0A2R9YJN3	Escherichia_phage	96.4	4.6e-53
AYB97828.1|2292375_2293401_+|capsid	minor capsid protein E	capsid	C6ZCY2	Enterobacteria_phage	98.2	2.8e-189
AYB97829.1|2293442_2293838_+	DNA-packaging protein FI	NA	A0A2R9YJP4	Escherichia_phage	95.5	1.1e-58
AYB97830.1|2293849_2294203_+|tail	phage tail protein	tail	A0A2R9YJJ5	Escherichia_phage	97.4	6.4e-61
AYB97831.1|2294787_2295183_+|tail	phage tail protein	tail	A0A2R9YJI2	Escherichia_phage	98.5	8.5e-70
AYC00103.1|2295190_2295931_+|tail	phage tail protein	tail	A0A0K2FJ05	Enterobacteria_phage	96.7	5.7e-128
AYB97832.1|2295946_2296369_+|tail	phage minor tail protein G	tail	A0A0K2FIQ8	Enterobacteria_phage	85.7	2.2e-60
AYB97833.1|2296350_2296785_+|tail	phage tail assembly protein T	tail	A0A0K2FJB3	Enterobacteria_phage	100.0	6.9e-65
AYB97834.1|2296777_2299339_+|tail	phage tail tape measure protein	tail	A0A0K2FI43	Enterobacteria_phage	91.3	0.0e+00
AYB97835.1|2299335_2299665_+|tail	phage tail protein	tail	A0A0K2FIE9	Enterobacteria_phage	99.1	3.6e-58
AYB97836.1|2299664_2300363_+|tail	phage minor tail protein L	tail	A0A0K2FJ01	Enterobacteria_phage	98.7	2.1e-132
AYB97837.1|2300368_2301112_+|tail	phage tail protein	tail	K7PLW1	Enterobacteria_phage	98.0	1.8e-150
AYB97838.1|2301009_2301681_+|tail	tail assembly protein	tail	C6ZCZ4	Enterobacteria_phage	98.2	3.8e-102
AYB97839.1|2301741_2305221_+	host specificity protein J	NA	A5LH43	Enterobacteria_phage	90.1	0.0e+00
AYB97840.1|2305288_2305888_+	Ail/Lom family protein	NA	H6WZM8	Escherichia_phage	93.0	7.2e-105
AYB97841.1|2305952_2308976_+|tail	phage tail protein	tail	U5N099	Enterobacteria_phage	81.4	2.1e-67
AYB97842.1|2308975_2309551_+|tail	tail fiber assembly protein	tail	K7PMH7	Enterobacteria_phage	96.9	2.0e-104
AYB97843.1|2309648_2310239_-	DNA invertase	NA	A0A0A7NPV4	Enterobacteria_phage	38.8	1.6e-24
AYB97844.1|2310555_2310789_-	hypothetical protein	NA	A0A192Y6D5	Salmonella_phage	88.3	1.1e-32
>prophage 8
CP022959	Escherichia coli ATCC 8739 chromosome, complete genome	4746918	2969628	3057998	4746918	portal,head,protease,plate,integrase,capsid,tRNA,tail	Salmonella_phage(55.56%)	91	2962591:2962606	3060569:3060584
2962591:2962606	attL	GTTACCGCCATCGCCA	NA	NA	NA	NA
AYB98429.1|2969628_2970921_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	48.2	1.5e-94
AYB98430.1|2971011_2972355_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	41.0	5.6e-81
AYB98431.1|2972365_2972977_-	outer membrane lipoprotein carrier protein LolA	NA	NA	NA	NA	NA
AYB98432.1|2973131_2977121_-	DNA translocase FtsK	NA	A0A218M9A2	Mycobacterium_phage	48.7	1.2e-86
AYB98433.1|2977255_2977750_-	leucine-responsive regulatory protein	NA	NA	NA	NA	NA
AYB98434.1|2978294_2979260_+	thioredoxin reductase	NA	A0A2I2L5E1	Orpheovirus	44.6	8.5e-63
AYB98435.1|2979382_2981149_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	24.3	7.0e-23
AYB98436.1|2981149_2982871_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	NA	W8CYL7	Bacillus_phage	25.2	2.9e-21
AYB98437.1|2982912_2983617_+|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	tRNA	NA	NA	NA	NA
AYB98438.1|2983901_2984120_+	translation initiation factor IF-1	NA	NA	NA	NA	NA
AYB98439.1|2988001_2988322_-|protease	ATP-dependent Clp protease adaptor ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	44.4	1.6e-13
AYB98440.1|2988644_2988869_+	cold-shock protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	61.2	2.3e-16
AYB98441.1|2988941_2990888_-	macrolide ABC transporter permease/ATP-binding protein MacB	NA	G9BWD6	Planktothrix_phage	40.1	1.1e-37
AYB98442.1|2990884_2992000_-	MacA family efflux pump subunit	NA	NA	NA	NA	NA
AYB98443.1|2992114_2993107_+	DUF535 domain-containing protein	NA	NA	NA	NA	NA
AYB98444.1|2993103_2994762_-	ATP-dependent endonuclease	NA	NA	NA	NA	NA
AYB98445.1|2995186_2995882_+	aquaporin	NA	NA	NA	NA	NA
AYB98446.1|2996376_2997276_+	hypothetical protein	NA	NA	NA	NA	NA
AYB98447.1|2997419_2999072_+	hydroxylamine reductase	NA	NA	NA	NA	NA
AYB98448.1|2999083_3000052_+	NADH oxidoreductase	NA	NA	NA	NA	NA
AYB98449.1|3000184_3001903_+	pyruvate dehydrogenase [ubiquinone]	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	24.0	2.3e-31
AYB98450.1|3001939_3002941_+	low-specificity L-threonine aldolase	NA	NA	NA	NA	NA
AYB98451.1|3002951_3004382_+	DUF2867 domain-containing protein	NA	NA	NA	NA	NA
AYC00137.1|3004480_3005494_+	hypothetical protein	NA	NA	NA	NA	NA
AYB98452.1|3005490_3006321_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A1B0UZW5	Roseobacter_phage	30.0	5.7e-07
AYB98453.1|3006317_3006641_-	hypothetical protein	NA	NA	NA	NA	NA
AYB98454.1|3006766_3007282_+	lipoprotein	NA	NA	NA	NA	NA
AYB98455.1|3007499_3008228_+	arginine ABC transporter ATP-binding protein ArtP	NA	G9BWD6	Planktothrix_phage	36.7	6.0e-29
AYB98456.1|3008245_3008977_+	arginine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AYB98457.1|3008983_3009700_+	arginine ABC transporter permease ArtQ	NA	NA	NA	NA	NA
AYB98458.1|3009699_3010368_+	arginine ABC transporter permease ArtM	NA	NA	NA	NA	NA
AYB98459.1|3010593_3011325_+	arginine/ornithine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AYB98460.1|3011523_3012651_-	23S rRNA (uracil(747)-C(5))-methyltransferase RlmC	NA	A0A1X9I6F4	Streptococcus_phage	27.0	6.0e-28
AYB98461.1|3012691_3013180_-	hypothetical protein	NA	NA	NA	NA	NA
AYB98462.1|3013239_3014085_-	putrescine ABC transporter permease PotI	NA	NA	NA	NA	NA
AYB98463.1|3014081_3015035_-	putrescine ABC transporter permease	NA	NA	NA	NA	NA
AYB98464.1|3015044_3016178_-	putrescine transport ATP-binding protein PotG	NA	G3M9Y6	Bacillus_virus	34.0	1.4e-29
AYB98465.1|3016272_3017385_-	putrescine-binding periplasmic protein	NA	NA	NA	NA	NA
AYB98466.1|3017368_3017530_-	putrescine/spermidine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AYB98467.1|3017735_3018212_-	hypothetical protein	NA	NA	NA	NA	NA
AYB98468.1|3018299_3019202_-	30S ribosomal protein S6--L-glutamate ligase	NA	I3ULC9	Synechococcus_phage	34.4	2.6e-37
AYB98469.1|3019262_3019985_-	oxygen-insensitive NADPH nitroreductase	NA	NA	NA	NA	NA
AYB98470.1|3019968_3020256_-	hypothetical protein	NA	NA	NA	NA	NA
AYB98471.1|3020415_3020673_+	GrxA family glutaredoxin	NA	A0A2I7SAE2	Vibrio_phage	61.9	3.0e-23
AYB98472.1|3020702_3021080_-	hypothetical protein	NA	NA	NA	NA	NA
AYB98473.1|3021349_3023035_+	transporter	NA	NA	NA	NA	NA
AYB98474.1|3023270_3023489_-	transcriptional regulator	NA	Q53ZE7	Salmonella_virus	69.0	7.5e-20
AYB98475.1|3023579_3024680_-	late control protein D	NA	E5G6Q3	Salmonella_phage	84.4	3.2e-175
AYB98476.1|3024676_3025162_-|tail	phage tail protein	tail	E5G6Q2	Salmonella_phage	81.2	1.7e-67
AYB98477.1|3025158_3028236_-|tail	phage tail tape measure protein	tail	E5G6Q1	Salmonella_phage	61.5	0.0e+00
AYB98478.1|3028228_3028348_-|tail	GpE family phage tail protein	tail	E5G6Q0	Salmonella_phage	87.2	2.8e-13
AYB98479.1|3028362_3028665_-|tail	phage tail assembly protein	tail	A0A1S6KZZ9	Salmonella_phage	90.0	8.2e-41
AYB98480.1|3028719_3029235_-|tail	phage major tail tube protein	tail	A0A1S6L002	Salmonella_phage	94.7	2.8e-89
AYB98481.1|3029244_3030417_-|tail	phage tail protein	tail	A0A1S6KZY7	Salmonella_phage	89.7	2.5e-202
AYB98482.1|3030559_3031126_-	DNA-invertase	NA	A0A0F7LA37	Escherichia_phage	86.8	3.8e-87
AYB98483.1|3031156_3031687_+|tail	phage tail protein	tail	A0A0F7LCR3	Escherichia_phage	97.2	1.5e-98
AYB98484.1|3031686_3032289_+|tail	tail fiber assembly protein	tail	A0A0F7LDQ5	Escherichia_phage	92.0	1.3e-98
AYB98485.1|3032260_3032680_-|tail	tail assembly chaperone	tail	M1SNQ2	Escherichia_phage	65.8	6.5e-36
AYB98486.1|3032676_3034098_-|tail	phage tail protein	tail	M1TAS6	Escherichia_phage	78.4	7.6e-153
AYB98487.1|3034094_3034700_-|tail	phage tail protein I	tail	A0A1S6L000	Salmonella_phage	92.5	5.2e-111
AYB98488.1|3034692_3035601_-|plate	baseplate assembly protein	plate	A0A1S6KZY6	Salmonella_phage	90.7	2.7e-143
AYB98489.1|3035587_3035947_-|plate	baseplate assembly protein	plate	A0A1S6KZZ4	Salmonella_phage	84.0	5.2e-50
AYB98490.1|3035943_3036522_-|plate	phage baseplate assembly protein V	plate	A0A1S6KZX7	Salmonella_phage	86.5	2.1e-93
AYB98491.1|3036648_3037545_-	hypothetical protein	NA	NA	NA	NA	NA
AYB98492.1|3037538_3038165_-	hypothetical protein	NA	NA	NA	NA	NA
AYB98493.1|3038703_3039135_-|tail	phage tail protein	tail	E5G6N3	Salmonella_phage	93.0	1.3e-71
AYB98494.1|3039097_3039301_-	hypothetical protein	NA	A0A1S6KZX6	Salmonella_phage	76.1	1.4e-23
AYB98495.1|3040568_3041033_-|head	head completion/stabilization protein	head	A0A1S6KZW8	Salmonella_phage	88.3	1.6e-75
AYB98496.1|3041128_3041779_-	hypothetical protein	NA	E5G6M7	Salmonella_phage	95.8	1.9e-111
AYB98497.1|3041782_3042841_-|capsid	phage major capsid protein, P2 family	capsid	E5G6M6	Salmonella_phage	93.4	3.8e-181
AYB98498.1|3042857_3043691_-|capsid	capsid protein	capsid	A0A1S6KZW9	Salmonella_phage	90.6	1.2e-121
AYB98499.1|3043833_3045600_+	oxidoreductase	NA	A0A1S6KZW3	Salmonella_phage	99.5	0.0e+00
AYB98500.1|3045599_3046625_+|portal	phage portal protein	portal	A0A1S6KZW5	Salmonella_phage	88.9	3.1e-172
AYB98501.1|3046677_3046995_-	hypothetical protein	NA	NA	NA	NA	NA
AYB98502.1|3046994_3047654_-	hypothetical protein	NA	NA	NA	NA	NA
AYB98503.1|3047650_3048346_-	hypothetical protein	NA	NA	NA	NA	NA
AYB98504.1|3048626_3049358_-	hypothetical protein	NA	NA	NA	NA	NA
AYB98505.1|3049417_3049723_-	DinI family protein	NA	E5G6M1	Salmonella_phage	98.7	8.1e-36
AYB98506.1|3049661_3049850_-	hypothetical protein	NA	E5G6M0	Salmonella_phage	96.8	1.6e-26
AYB98507.1|3050002_3052375_-	replication endonuclease	NA	E5G6L9	Salmonella_phage	96.7	0.0e+00
AYC00138.1|3052374_3053196_-	hypothetical protein	NA	A0A0M4RCP6	Salmonella_phage	75.7	1.1e-122
AYB98508.1|3053201_3054056_-	DNA adenine methylase	NA	E5G6L8	Salmonella_phage	89.8	1.9e-146
AYB98509.1|3054052_3054280_-	hypothetical protein	NA	E5G6L7	Salmonella_phage	98.7	3.5e-36
AYB98510.1|3054279_3054513_-	DUF2732 domain-containing protein	NA	E5G6L6	Salmonella_phage	97.4	1.1e-32
AYB98511.1|3054580_3054922_-	hypothetical protein	NA	E5G6L5	Salmonella_phage	98.2	1.3e-55
AYB98512.1|3054885_3055086_-	DUF2724 domain-containing protein	NA	E5G6L4	Salmonella_phage	97.0	2.7e-32
AYB98513.1|3055093_3055603_-	hypothetical protein	NA	E5G6L3	Salmonella_phage	98.8	5.8e-87
AYB98514.1|3055635_3055857_-	regulator	NA	NA	NA	NA	NA
AYB98515.1|3055982_3056552_+	phage repressor protein	NA	A0A1S6KZZ7	Salmonella_phage	42.9	3.2e-38
AYB98516.1|3056567_3056759_+	hypothetical protein	NA	A0A0R6PIH8	Moraxella_phage	68.2	4.0e-09
AYB98517.1|3056945_3057998_+|integrase	integrase	integrase	A0A218M4I3	Erwinia_phage	57.0	6.1e-107
3060569:3060584	attR	TGGCGATGGCGGTAAC	NA	NA	NA	NA
>prophage 9
CP022959	Escherichia coli ATCC 8739 chromosome, complete genome	4746918	3137128	3146830	4746918		Enterobacteria_phage(33.33%)	16	NA	NA
AYB98591.1|3137128_3138418_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	29.0	7.7e-19
AYB98592.1|3138476_3138953_+	kinase inhibitor	NA	NA	NA	NA	NA
AYB98593.1|3138867_3139047_+	hypothetical protein	NA	NA	NA	NA	NA
AYB98594.1|3139556_3139721_+	colanic acid biosynthesis acetyltransferase wcaB domain protein	NA	NA	NA	NA	NA
AYB98595.1|3140507_3140777_+	host cell division inhibitory peptide Kil	NA	M1FN78	Enterobacteria_phage	96.6	3.3e-41
AYB98596.1|3140731_3140884_+	host-nuclease inhibitor protein Gam	NA	Q08J51	Stx2-converting_phage	98.0	4.7e-21
AYB98597.1|3140852_3141149_+	host-nuclease inhibitor protein Gam	NA	A0A1I9LJN1	Stx_converting_phage	99.0	2.1e-49
AYB98598.1|3141154_3141940_+	phage recombination protein Bet	NA	A0A1I9LJN0	Stx_converting_phage	99.6	6.9e-148
AYB98599.1|3141936_3142617_+	exonuclease	NA	A0A0P0ZCD4	Stx2-converting_phage	99.6	3.5e-132
AYC00142.1|3142613_3142796_+	DUF1317 domain-containing protein	NA	A0A1U8QQC1	Enterobacteria_phage	100.0	1.6e-28
AYB98600.1|3142768_3142960_+	hypothetical protein	NA	A0A0P0ZC67	Stx2-converting_phage	96.8	2.8e-26
AYB98601.1|3142970_3143252_+	cell division protein ZapA	NA	A0A0P0ZE02	Stx2-converting_phage	98.9	5.5e-47
AYB98602.1|3143350_3143572_+	conjugal transfer protein TraR	NA	A0A0N7C211	Escherichia_phage	98.6	6.4e-35
AYB98603.1|3143568_3143820_+	hypothetical protein	NA	A0A0K2FJF6	Enterobacteria_phage	92.3	1.3e-31
AYB98604.1|3146151_3146580_+	DUF2513 domain-containing protein	NA	NA	NA	NA	NA
AYB98605.1|3146662_3146830_+	hypothetical protein	NA	A0A0K2FJ46	Enterobacteria_phage	98.2	1.3e-27
