assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003590755.1_ASM359075v1	CP032449	Salmonella enterica subsp. enterica serovar Dublin strain USMARC-69838 chromosome, complete genome	1	975097-975367	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAAC,GTGTTCCCCGCGCCAGCGGGGATAAAC,GTGTTCCCCGCGCCAGCGGGGATAAAC	27,27,27	0	0	NA	NA	I-E:I-E:I-E	3,4,4	4	TypeI-E	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,cas14j	NA,NA|57aa|down_2|CP032449.1_976643_976814_+,NA|73aa|down_5|CP032449.1_980606_980825_-,NA|69aa|down_8|CP032449.1_982642_982849_-	NA|179aa|up_9|CP032449.1_963644_964181_-	PRK15260, PRK15260, fimbrial protein SteF; Provisional	NA|157aa|up_8|CP032449.1_964177_964648_-	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional	NA|169aa|up_7|CP032449.1_964662_965169_-	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional	NA|258aa|up_6|CP032449.1_965188_965962_-	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional	NA|900aa|up_5|CP032449.1_965974_968674_-	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein	NA|196aa|up_4|CP032449.1_968753_969341_-	PRK15261, PRK15261, fimbrial protein SteA; Provisional	NA|267aa|up_3|CP032449.1_969946_970747_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_2|CP032449.1_970974_972612_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_1|CP032449.1_972694_973993_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_0|CP032449.1_974128_974800_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|266aa|down_0|CP032449.1_975467_976265_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|down_1|CP032449.1_976352_976715_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|57aa|down_2|CP032449.1_976643_976814_+	NA	NA|600aa|down_3|CP032449.1_977138_978938_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_4|CP032449.1_978937_980650_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|73aa|down_5|CP032449.1_980606_980825_-	NA	NA|245aa|down_6|CP032449.1_980751_981486_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|down_7|CP032449.1_981573_982527_-	PRK15379, PRK15379, type III secretion system effector SopD	NA|69aa|down_8|CP032449.1_982642_982849_-	NA	cas8e|519aa|down_9|CP032449.1_985645_987202_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1
GCA_003590755.1_ASM359075v1	CP032449	Salmonella enterica subsp. enterica serovar Dublin strain USMARC-69838 chromosome, complete genome	2	991527-991675	2	CRISPRCasFinder	no	cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAAC	27	0	0	NA	NA	I-E	2	2	TypeI-E	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,cas14j	NA|69aa|up_7|CP032449.1_982642_982849_-,NA	NA|245aa|up_9|CP032449.1_980751_981486_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|up_8|CP032449.1_981573_982527_-	PRK15379, PRK15379, type III secretion system effector SopD	NA|69aa|up_7|CP032449.1_982642_982849_-	NA	cas8e|519aa|up_6|CP032449.1_985645_987202_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|187aa|up_5|CP032449.1_987198_987759_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|353aa|up_4|CP032449.1_987772_988831_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|CP032449.1_988841_989588_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|CP032449.1_989569_990220_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|307aa|up_1|CP032449.1_990216_991137_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|CP032449.1_991136_991430_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|349aa|down_0|CP032449.1_991691_992738_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|CP032449.1_992988_993897_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|CP032449.1_993906_995346_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|CP032449.1_995332_995938_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|119aa|down_4|CP032449.1_995955_996312_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|CP032449.1_996502_996814_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|CP032449.1_996832_997543_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|CP032449.1_997542_998022_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|CP032449.1_998018_999068_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|CP032449.1_999048_999810_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCA_003590755.1_ASM359075v1	CP032450	Salmonella enterica subsp. enterica serovar Dublin strain USMARC-69838 plasmid pSDU1-USMARC-69838, complete sequence	1	29067-29186	1	CRISPRCasFinder	no	DEDDh	DEDDh,cas14j	Unclear	TGCGTACCCATCCACCTTTCAGTGCGTACCCATCCACCTTTCA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,cas14j	NA|112aa|up_7|CP032450.1_23135_23471_+,NA|60aa|up_3|CP032450.1_26597_26777_+,NA|118aa|up_2|CP032450.1_27001_27355_-,NA|149aa|up_1|CP032450.1_27491_27938_-,NA|67aa|down_0|CP032450.1_29852_30053_+,NA|108aa|down_3|CP032450.1_30717_31041_+,NA|82aa|down_4|CP032450.1_31085_31331_+,NA|110aa|down_6|CP032450.1_31628_31958_+,NA|60aa|down_7|CP032450.1_32000_32180_+,NA|66aa|down_8|CP032450.1_32201_32399_+,NA|91aa|down_9|CP032450.1_32411_32684_+	NA|372aa|up_9|CP032450.1_21334_22450_+	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|139aa|up_8|CP032450.1_22535_22952_+	cd06127, DEDDh, DEDDh 3'-5' exonuclease domain family	NA|112aa|up_7|CP032450.1_23135_23471_+	NA	NA|189aa|up_6|CP032450.1_23527_24094_+	pfam11140, DUF2913, Protein of unknown function (DUF2913)	NA|207aa|up_5|CP032450.1_25460_26081_+	cd02042, ParAB_family, partition proteins ParAB family	NA|77aa|up_4|CP032450.1_26132_26363_+	pfam09274, ParG, ParG	NA|60aa|up_3|CP032450.1_26597_26777_+	NA	NA|118aa|up_2|CP032450.1_27001_27355_-	NA	NA|149aa|up_1|CP032450.1_27491_27938_-	NA	NA|279aa|up_0|CP032450.1_27977_28814_-	pfam01051, Rep_3, Initiator Replication protein	NA|67aa|down_0|CP032450.1_29852_30053_+	NA	NA|84aa|down_1|CP032450.1_30049_30301_+	PRK02854, PRK02854, primosomal protein DnaT	NA|94aa|down_2|CP032450.1_30290_30572_+	COG2026, RelE, Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning]	NA|108aa|down_3|CP032450.1_30717_31041_+	NA	NA|82aa|down_4|CP032450.1_31085_31331_+	NA	NA|72aa|down_5|CP032450.1_31320_31536_+	TIGR03830, transcriptional_regulator_XRE_family, putative zinc finger/helix-turn-helix protein, YgiT family	NA|110aa|down_6|CP032450.1_31628_31958_+	NA	NA|60aa|down_7|CP032450.1_32000_32180_+	NA	NA|66aa|down_8|CP032450.1_32201_32399_+	NA	NA|91aa|down_9|CP032450.1_32411_32684_+	NA
