assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003590665.1_ASM359066v1	CP031817	Klebsiella pneumoniae strain INF235-sc-2280127 chromosome, complete genome	1	1028634-1031971	1,1,2,1,3,4	PILER-CR,CRISPRCasFinder,PILER-CR,CRT,PILER-CR,PILER-CR	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,WYL	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCGAC,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACCG	31,29,29,29,28,29	0	0	NA	NA	I-E:I-E:I-E:I-E:I-E:I-E	44,54,44,42,44,44	54	TypeI-E	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,WYL,RT,c2c9_V-U4	NA,NA	NA|571aa|up_9|CP031817.1_1017341_1019054_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_8|CP031817.1_1019152_1019887_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	cas3|888aa|up_7|CP031817.1_1020093_1022757_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|519aa|up_6|CP031817.1_1022768_1024325_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|181aa|up_5|CP031817.1_1024321_1024864_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|352aa|up_4|CP031817.1_1024882_1025938_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|CP031817.1_1025948_1026695_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|CP031817.1_1026676_1027327_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|307aa|up_1|CP031817.1_1027323_1028244_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|CP031817.1_1028243_1028537_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|674aa|down_0|CP031817.1_1032051_1034073_-	cd18422, BTB_POZ_KCNG3, BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in potassium voltage-gated channel subfamily G member 3 (KCNG3)	NA|396aa|down_1|CP031817.1_1034059_1035247_-	pfam11340, DUF3142, Protein of unknown function (DUF3142)	NA|352aa|down_2|CP031817.1_1035282_1036338_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|472aa|down_3|CP031817.1_1036575_1037991_+	PRK10637, cysG, siroheme synthase CysG	NA|303aa|down_4|CP031817.1_1038000_1038909_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_5|CP031817.1_1038918_1040346_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_6|CP031817.1_1040345_1040951_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|109aa|down_7|CP031817.1_1041001_1041328_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|106aa|down_8|CP031817.1_1041468_1041786_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_9|CP031817.1_1041805_1042516_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase
GCA_003590665.1_ASM359066v1	CP031817	Klebsiella pneumoniae strain INF235-sc-2280127 chromosome, complete genome	2	3741976-3742088	2	CRISPRCasFinder	no		cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,WYL	Orphan	GGTAAGCGCAGCACCACCGGGCGATGC	27	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,WYL,RT,c2c9_V-U4	NA,NA|85aa|down_0|CP031817.1_3742195_3742450_+,NA|130aa|down_5|CP031817.1_3747280_3747670_-	NA|122aa|up_9|CP031817.1_3730826_3731192_+	COG3450, COG3450, Predicted enzyme of the cupin superfamily [General function prediction only]	NA|500aa|up_8|CP031817.1_3731610_3733110_+	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|198aa|up_7|CP031817.1_3733087_3733681_+	pfam11354, DUF3156, Protein of unknown function (DUF3156)	NA|372aa|up_6|CP031817.1_3733687_3734803_-	cd09996, HDAC_classII_1, Histone deacetylases and histone-like deacetylases, classII	NA|391aa|up_5|CP031817.1_3734819_3735992_-	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	NA|228aa|up_4|CP031817.1_3736109_3736793_-	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon	NA|396aa|up_3|CP031817.1_3737218_3738406_+	TIGR03942, sulfatase_rSAM, anaerobic sulfatase-maturating enzyme	NA|578aa|up_2|CP031817.1_3738449_3740183_+	cd16025, PAS_like, Bacterial Arylsulfatase of Pseudomonas aeruginosa and related proteins	NA|259aa|up_1|CP031817.1_3740270_3741047_+	cd05233, SDR_c, classical (c) SDRs	NA|264aa|up_0|CP031817.1_3741072_3741864_+	pfam17409, MoaF_C, MoaF C-terminal domain	NA|85aa|down_0|CP031817.1_3742195_3742450_+	NA	NA|318aa|down_1|CP031817.1_3743083_3744037_-	cd19081, AKR_AKR9C1, AKR9C family of aldo-keto reductase (AKR)	NA|259aa|down_2|CP031817.1_3744165_3744942_-	cd13703, PBP2_HisJ_LAO, Substrate binding domain of ABC-type histidine- and lysine/arginine/ornithine transporters; the type 2 periplasmic-binding protein fold	NA|393aa|down_3|CP031817.1_3744961_3746140_-	cd05666, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily	NA|152aa|down_4|CP031817.1_3746645_3747101_-	pfam11776, RcnB, Nickel/cobalt transporter regulator	NA|130aa|down_5|CP031817.1_3747280_3747670_-	NA	NA|373aa|down_6|CP031817.1_3747941_3749060_+	cd01139, TroA_f, Periplasmic binding protein TroA_f	NA|361aa|down_7|CP031817.1_3749067_3750150_+	COG0609, FepD, ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism]	NA|266aa|down_8|CP031817.1_3750146_3750944_+	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]	NA|381aa|down_9|CP031817.1_3750984_3752127_-	COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms]
GCA_003590665.1_ASM359066v1	CP031817	Klebsiella pneumoniae strain INF235-sc-2280127 chromosome, complete genome	3	4339813-4339937	3	CRISPRCasFinder	no		cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,WYL	Orphan	GTTTGCTCCCTCTCCCACCGGGAGAGGGCCGGGGTGAGGGCAA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,WYL,RT,c2c9_V-U4	NA,NA	NA|450aa|up_9|CP031817.1_4329175_4330525_-	PRK11715, PRK11715, cell envelope integrity protein CreD	NA|475aa|up_8|CP031817.1_4330587_4332012_-	PRK11100, PRK11100, sensory histidine kinase CreC; Provisional	NA|230aa|up_7|CP031817.1_4332011_4332701_-	PRK11083, PRK11083, DNA-binding response regulator CreB; Provisional	NA|158aa|up_6|CP031817.1_4332713_4333187_-	PRK10756, PRK10756, protein CreA	NA|290aa|up_5|CP031817.1_4333396_4334266_+	PRK15121, PRK15121, MDR efflux pump AcrAB transcriptional activator RobA	NA|216aa|up_4|CP031817.1_4334262_4334910_-	PRK03482, PRK03482, phosphoglycerate mutase GpmB	NA|172aa|up_3|CP031817.1_4335023_4335539_+	PRK05074, PRK05074, non-canonical purine NTP phosphatase	NA|110aa|up_2|CP031817.1_4335525_4335855_-	PRK01381, PRK01381, trp operon repressor	NA|646aa|up_1|CP031817.1_4335943_4337881_-	PRK11619, PRK11619, lytic murein transglycosylase; Provisional	NA|556aa|up_0|CP031817.1_4338109_4339777_+	PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed	NA|411aa|down_0|CP031817.1_4339952_4341185_-	PRK08099, PRK08099, multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR	NA|461aa|down_1|CP031817.1_4341206_4342589_-	TIGR00416, DNA_repair_protein_RadA_homolog, DNA repair protein RadA	NA|324aa|down_2|CP031817.1_4342598_4343570_-	PRK11133, serB, phosphoserine phosphatase; Provisional	NA|216aa|down_3|CP031817.1_4343674_4344322_+	PRK11246, PRK11246, YtjB family periplasmic protein	NA|339aa|down_4|CP031817.1_4344321_4345338_+	PRK03822, lplA, lipoate-protein ligase A; Provisional	NA|240aa|down_5|CP031817.1_4345418_4346138_-	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|408aa|down_6|CP031817.1_4346240_4347464_-	PRK05362, PRK05362, phosphopentomutase; Provisional	NA|441aa|down_7|CP031817.1_4347516_4348839_-	PRK05820, deoA, thymidine phosphorylase; Reviewed	NA|260aa|down_8|CP031817.1_4348952_4349732_-	PRK05283, PRK05283, deoxyribose-phosphate aldolase; Provisional	NA|426aa|down_9|CP031817.1_4350148_4351426_-	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism]
GCA_003590665.1_ASM359066v1	CP031818	Klebsiella pneumoniae strain INF235-sc-2280127 plasmid unnamed1, complete sequence	1	3166-3330	1	PILER-CR	no		csa3,DEDDh,RT,DinG,c2c9_V-U4	Orphan	GGCAGGAACAACGAGTGTCTACTGTAGGCGACAACCCACGTACCGGG	47	1	1	3216-3230	CP031818.1_2396-2410	NA	2	2	Orphan	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,WYL,RT,c2c9_V-U4	NA|300aa|up_2|CP031818.1_0_900_+,NA|113aa|up_1|CP031818.1_1709_2048_+,NA|89aa|up_0|CP031818.1_2574_2841_+,NA|83aa|down_0|CP031818.1_3419_3668_-,NA|151aa|down_2|CP031818.1_5463_5916_+,NA|105aa|down_3|CP031818.1_6159_6474_-,NA|68aa|down_4|CP031818.1_6503_6707_-	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|300aa|up_2|CP031818.1_0_900_+	NA	NA|113aa|up_1|CP031818.1_1709_2048_+	NA	NA|89aa|up_0|CP031818.1_2574_2841_+	NA	NA|83aa|down_0|CP031818.1_3419_3668_-	NA	NA|312aa|down_1|CP031818.1_4026_4962_+	PRK10993, PRK10993, omptin family outer membrane protease	NA|151aa|down_2|CP031818.1_5463_5916_+	NA	NA|105aa|down_3|CP031818.1_6159_6474_-	NA	NA|68aa|down_4|CP031818.1_6503_6707_-	NA	NA|93aa|down_5|CP031818.1_7755_8034_+	COG4453, COG4453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|335aa|down_6|CP031818.1_8380_9385_-	COG3547, COG3547, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|140aa|down_7|CP031818.1_9745_10165_+	pfam11162, DUF2946, Protein of unknown function (DUF2946)	NA|688aa|down_8|CP031818.1_10247_12311_+	TIGR01778, TonB-copper, TonB-dependent copper receptor	NA|87aa|down_9|CP031818.1_12367_12628_+	pfam10749, DUF2534, Protein of unknown function (DUF2534)
GCA_003590665.1_ASM359066v1	CP031818	Klebsiella pneumoniae strain INF235-sc-2280127 plasmid unnamed1, complete sequence	2	223755-223982	2,1	PILER-CR,CRISPRCasFinder	no	DEDDh,RT,DinG	csa3,DEDDh,RT,DinG,c2c9_V-U4	Unclear	CGCCGATAACCCCCGCATGCGGGGGGAATAC,CGGGGGGAATACTTCCAGCCAGCGGGT	31,27	0	0	NA	NA	NA:NA	2,1	2	Orphan	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,WYL,RT,c2c9_V-U4	NA|242aa|up_6|CP031818.1_216837_217563_+,NA|84aa|up_0|CP031818.1_222692_222944_-,NA|236aa|down_1|CP031818.1_225129_225837_-,NA|264aa|down_4|CP031818.1_228276_229068_-,NA|137aa|down_7|CP031818.1_231495_231906_-,NA|136aa|down_8|CP031818.1_231935_232343_-,NA|132aa|down_9|CP031818.1_232352_232748_-	NA|285aa|up_9|CP031818.1_213985_214840_+	TIGR04424, Microcin_B17-processing_protein_McbB, McbB family protein	NA|269aa|up_8|CP031818.1_214841_215648_+	cd02142, McbC_SagB-like_oxidoreductase, oxidase similar to the microcin B17 processing protein McbC	NA|396aa|up_7|CP031818.1_215640_216828_+	pfam02624, YcaO, YcaO cyclodehydratase, ATP-ad Mg2+-binding	NA|242aa|up_6|CP031818.1_216837_217563_+	NA	NA|243aa|up_5|CP031818.1_217559_218288_+	cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A	NA|187aa|up_4|CP031818.1_218291_218852_+	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]	DEDDh|183aa|up_3|CP031818.1_219922_220471_-	cd06127, DEDDh, DEDDh 3'-5' exonuclease domain family	NA|141aa|up_2|CP031818.1_220701_221124_-	PRK10276, PRK10276, translesion error-prone DNA polymerase V autoproteolytic subunit	RT|495aa|up_1|CP031818.1_221208_222693_-	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|84aa|up_0|CP031818.1_222692_222944_-	NA	NA|264aa|down_0|CP031818.1_224093_224885_-	pfam08317, Spc7, Spc7 kinetochore protein	NA|236aa|down_1|CP031818.1_225129_225837_-	NA	DinG|625aa|down_2|CP031818.1_225830_227705_-	COG1199, DinG, Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]	NA|189aa|down_3|CP031818.1_227707_228274_-	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	NA|264aa|down_4|CP031818.1_228276_229068_-	NA	NA|138aa|down_5|CP031818.1_229130_229544_-	pfam01637, ATPase_2, ATPase domain predominantly from Archaea	NA|335aa|down_6|CP031818.1_230120_231125_-	COG3547, COG3547, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|137aa|down_7|CP031818.1_231495_231906_-	NA	NA|136aa|down_8|CP031818.1_231935_232343_-	NA	NA|132aa|down_9|CP031818.1_232352_232748_-	NA
