assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003573855.1_ASM357385v1	AP018922	Staphylococcus aureus JMUB1273 DNA, complete genome	1	143700-143781	1	CRISPRCasFinder	no		DinG,cas3,DEDDh,csa3,WYL	Orphan	TTCTACAGGCAATGCAAGTTGGG	23	1	2	143723-143758|143723-143758	AP018922.1_1038173-1038138|AP018922.1_1912985-1912950	NA	1	1	Orphan	DinG,cas3,DEDDh,csa3,WYL	NA,NA|68aa|down_0|AP018922.1_143845_144049_-	NA|413aa|up_9|AP018922.1_132780_134019_+	cd13127, MATE_tuaB_like, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins	NA|402aa|up_8|AP018922.1_134052_135258_+	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins	NA|186aa|up_7|AP018922.1_135268_135826_+	COG2148, WcaJ, Sugar transferases involved in lipopolysaccharide synthesis [Cell envelope biogenesis, outer membrane]	NA|296aa|up_6|AP018922.1_135825_136713_+	cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, subgroup 4, extended (e) SDRs	NA|421aa|up_5|AP018922.1_136766_138029_+	COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]	NA|382aa|up_4|AP018922.1_138105_139251_+	COG0381, WecB, UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]	NA|109aa|up_3|AP018922.1_139315_139642_-	PRK13313, PRK13313, staphylobilin-forming heme oxygenase IsdI	NA|128aa|up_2|AP018922.1_139648_140032_-	pfam04304, DUF454, Protein of unknown function (DUF454)	NA|496aa|up_1|AP018922.1_140458_141946_+	cd07117, ALDH_StaphAldA1, Uncharacterized Staphylococcus aureus AldA1 (SACOL0154) aldehyde dehydrogenase-like	NA|320aa|up_0|AP018922.1_142591_143551_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|68aa|down_0|AP018922.1_143845_144049_-	NA	NA|171aa|down_1|AP018922.1_144227_144740_+	pfam14026, DUF4242, Protein of unknown function (DUF4242)	NA|247aa|down_2|AP018922.1_145081_145822_+	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|325aa|down_3|AP018922.1_145835_146810_+	cd13553, PBP2_NrtA_CpmA_like, Substrate binding domain of ABC-type nitrate/bicarbonate transporters, a member of the type 2 periplasmic binding fold superfamily	NA|254aa|down_4|AP018922.1_146806_147568_+	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|344aa|down_5|AP018922.1_147580_148612_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|120aa|down_6|AP018922.1_148828_149188_+	COG5609, COG5609, Uncharacterized conserved protein [Function unknown]	NA|342aa|down_7|AP018922.1_149360_150386_+	PRK07574, PRK07574, NAD-dependent formate dehydrogenase	NA|417aa|down_8|AP018922.1_150769_152020_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|2392aa|down_9|AP018922.1_152466_159642_+	PRK12467, PRK12467, peptide synthase; Provisional
GCA_003573855.1_ASM357385v1	AP018922	Staphylococcus aureus JMUB1273 DNA, complete genome	2	810665-810889	2,1	CRISPRCasFinder,CRT	no		DinG,cas3,DEDDh,csa3,WYL	Orphan	CCAACTTGCACATTATTGTAAGCTGACTTTCCGCCAGCTTCTATGTTGGGGCCCC,CAGCTTCTGTGTTGGGGCCCC	55,21	3	14	810720-810754|810720-810754|810776-810811|810776-810811|810776-810811|810776-810811|810776-810811|810776-810811|810776-810811|810776-810811|810776-810811|810776-810811|810833-810868|810833-810868	AP018922.1_262028-261994|AP018922.1_766397-766363|AP018922.1_143724-143689|AP018922.1_1591414-1591449|AP018922.1_803572-803607|AP018922.1_1038172-1038207|AP018922.1_1324027-1323992|AP018922.1_1412495-1412530|AP018922.1_1412553-1412588|AP018922.1_1912867-1912902|AP018922.1_1922275-1922310|AP018922.1_2291838-2291803|AP018922.1_1198629-1198594|AP018922.1_1605999-1605964	NA:NA	1,3	3	Orphan	DinG,cas3,DEDDh,csa3,WYL	NA|62aa|up_6|AP018922.1_803385_803571_-,NA|153aa|down_6|AP018922.1_818849_819308_+	NA|162aa|up_9|AP018922.1_800105_800591_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_8|AP018922.1_800598_802038_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|up_7|AP018922.1_802104_803040_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|62aa|up_6|AP018922.1_803385_803571_-	NA	NA|304aa|up_5|AP018922.1_803862_804774_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|up_4|AP018922.1_804770_805766_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|up_3|AP018922.1_805876_806821_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|up_2|AP018922.1_807393_807981_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|up_1|AP018922.1_808223_809126_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|up_0|AP018922.1_809828_810458_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_0|AP018922.1_811269_812283_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_1|AP018922.1_812335_813346_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_2|AP018922.1_813483_814674_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|254aa|down_3|AP018922.1_814795_815557_+	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|506aa|down_4|AP018922.1_815559_817077_+	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA|435aa|down_5|AP018922.1_817206_818511_+	PRK00077, eno, enolase; Provisional	NA|153aa|down_6|AP018922.1_818849_819308_+	NA	NA|78aa|down_7|AP018922.1_819374_819608_+	COG1314, SecG, Preprotein translocase subunit SecG [Intracellular trafficking and secretion]	NA|247aa|down_8|AP018922.1_819723_820464_+	COG1647, COG1647, Esterase/lipase [General function prediction only]	NA|791aa|down_9|AP018922.1_820497_822870_+	TIGR02063, Ribonuclease_R, ribonuclease R
GCA_003573855.1_ASM357385v1	AP018922	Staphylococcus aureus JMUB1273 DNA, complete genome	4	1089612-1089703	3	CRISPRCasFinder	no		DinG,cas3,DEDDh,csa3,WYL	Orphan	TATAATGATTAAAAATCAAAGAGG	24	0	0	NA	NA	NA	1	1	Orphan	DinG,cas3,DEDDh,csa3,WYL	NA|359aa|up_7|AP018922.1_1080359_1081436_+,NA	NA|351aa|up_9|AP018922.1_1078415_1079468_-	COG5386, COG5386, Cell surface protein [Cell envelope biogenesis, outer membrane]	NA|228aa|up_8|AP018922.1_1079676_1080360_+	TIGR03656, IsdC, heme uptake protein IsdC	NA|359aa|up_7|AP018922.1_1080359_1081436_+	NA	NA|293aa|up_6|AP018922.1_1081432_1082311_+	TIGR03659, heme_ABC_transporter_heme-binding_protein_isdE, heme ABC transporter, heme-binding protein isdE	NA|322aa|up_5|AP018922.1_1082323_1083289_+	COG0609, FepD, ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism]	NA|245aa|up_4|AP018922.1_1083350_1084085_+	COG4509, COG4509, Uncharacterized protein conserved in bacteria [Function unknown]	NA|108aa|up_3|AP018922.1_1084103_1084427_+	PRK13312, PRK13312, staphylobilin-forming heme oxygenase IsdG	NA|247aa|up_2|AP018922.1_1084811_1085552_+	COG0566, SpoU, rRNA methylases [Translation, ribosomal structure and biogenesis]	NA|353aa|up_1|AP018922.1_1085931_1086990_+	PRK00488, pheS, phenylalanyl-tRNA synthetase subunit alpha; Validated	NA|801aa|up_0|AP018922.1_1086989_1089392_+	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed	NA|89aa|down_0|AP018922.1_1091009_1091276_+	PRK14126, PRK14126, cell division protein ZapA; Provisional	NA|148aa|down_1|AP018922.1_1091354_1091798_+	COG1286, CvpA, Uncharacterized membrane protein, required for colicin V production [General function prediction only]	NA|571aa|down_2|AP018922.1_1091870_1093583_+	PRK08609, PRK08609, DNA polymerase/3'-5' exonuclease PolX	NA|783aa|down_3|AP018922.1_1093592_1095941_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|105aa|down_4|AP018922.1_1096113_1096428_+	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin	NA|594aa|down_5|AP018922.1_1096751_1098533_+	PRK00558, uvrC, excinuclease ABC subunit UvrC	NA|205aa|down_6|AP018922.1_1098856_1099471_+	cd03497, SQR_TypeB_1_TM, Succinate:quinone oxidoreductase (SQR) Type B subfamily 1, transmembrane subunit; composed of proteins similar to Bacillus subtilis SQR	NA|589aa|down_7|AP018922.1_1099522_1101289_+	PRK08641, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed	NA|272aa|down_8|AP018922.1_1101288_1102104_+	PRK08640, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed	NA|267aa|down_9|AP018922.1_1102339_1103140_+	PRK00865, PRK00865, glutamate racemase; Provisional
GCA_003573855.1_ASM357385v1	AP018922	Staphylococcus aureus JMUB1273 DNA, complete genome	5	1108617-1108860	3	CRT	no		DinG,cas3,DEDDh,csa3,WYL	Orphan	ACAATGCAAGTTGGCGGGG	19	2	3	1108636-1108672|1108805-1108841|1108805-1108841	AP018922.1_2023754-2023718|AP018922.1_2023754-2023718|AP018922.1_2291900-2291936	NA	4	4	Orphan	DinG,cas3,DEDDh,csa3,WYL	NA|47aa|up_7|AP018922.1_1104389_1104530_+,NA|63aa|up_5|AP018922.1_1105129_1105318_+,NA|64aa|up_3|AP018922.1_1105774_1105966_+,NA|169aa|up_2|AP018922.1_1106490_1106997_+,NA|62aa|down_0|AP018922.1_1109021_1109207_-,NA|78aa|down_1|AP018922.1_1109828_1110062_-,NA|66aa|down_3|AP018922.1_1112300_1112498_+	NA|196aa|up_9|AP018922.1_1103151_1103739_+	PRK14822, PRK14822, XTP/dITP diphosphatase	NA|168aa|up_8|AP018922.1_1103731_1104235_+	COG0622, COG0622, Predicted phosphoesterase [General function prediction only]	NA|47aa|up_7|AP018922.1_1104389_1104530_+	NA	NA|110aa|up_6|AP018922.1_1104723_1105053_+	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|63aa|up_5|AP018922.1_1105129_1105318_+	NA	NA|132aa|up_4|AP018922.1_1105422_1105818_-	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed	NA|64aa|up_3|AP018922.1_1105774_1105966_+	NA	NA|169aa|up_2|AP018922.1_1106490_1106997_+	NA	NA|166aa|up_1|AP018922.1_1107255_1107753_+	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|117aa|up_0|AP018922.1_1107906_1108257_+	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN	NA|62aa|down_0|AP018922.1_1109021_1109207_-	NA	NA|78aa|down_1|AP018922.1_1109828_1110062_-	NA	NA|320aa|down_2|AP018922.1_1110538_1111498_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|66aa|down_3|AP018922.1_1112300_1112498_+	NA	NA|239aa|down_4|AP018922.1_1112997_1113714_-	PRK13350, PRK13350, superantigen-like protein; Reviewed	NA|242aa|down_5|AP018922.1_1113821_1114547_-	PRK13349, PRK13349, superantigen-like protein; Reviewed	NA|242aa|down_6|AP018922.1_1114641_1115367_-	PRK13043, PRK13043, superantigen-like protein; Reviewed	NA|334aa|down_7|AP018922.1_1115804_1116806_+	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional	NA|311aa|down_8|AP018922.1_1116828_1117761_+	PRK12353, PRK12353, putative amino acid kinase; Reviewed	NA|519aa|down_9|AP018922.1_1117932_1119489_+	COG1288, COG1288, Predicted membrane protein [Function unknown]
GCA_003573855.1_ASM357385v1	AP018922	Staphylococcus aureus JMUB1273 DNA, complete genome	6	1198542-1198627	4	CRISPRCasFinder	no	cas3	DinG,cas3,DEDDh,csa3,WYL	Unclear	AAAGTCAGCTTACAATAATGTGCAAGTTGG	30	1	3	1198572-1198597|1198572-1198597|1198572-1198597	AP018922.1_766341-766366|AP018922.1_766397-766422|AP018922.1_766453-766478	NA	1	1	Unclear	DinG,cas3,DEDDh,csa3,WYL	NA,NA	NA|78aa|up_9|AP018922.1_1187884_1188118_+	PRK00982, acpP, acyl carrier protein; Provisional	NA|244aa|up_8|AP018922.1_1188233_1188965_+	PRK00102, rnc, ribonuclease III; Reviewed	NA|1189aa|up_7|AP018922.1_1189111_1192678_+	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|417aa|up_6|AP018922.1_1192677_1193928_+	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|111aa|up_5|AP018922.1_1193914_1194247_+	PRK00118, PRK00118, putative DNA-binding protein; Validated	NA|456aa|up_4|AP018922.1_1194272_1195640_+	PRK10867, PRK10867, signal recognition particle protein; Provisional	NA|92aa|up_3|AP018922.1_1196074_1196350_+	COG0228, RpsP, Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]	NA|168aa|up_2|AP018922.1_1196537_1197041_+	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional	NA|246aa|up_1|AP018922.1_1197040_1197778_+	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed	NA|117aa|up_0|AP018922.1_1197880_1198231_+	PRK05338, rplS, 50S ribosomal protein L19; Provisional	NA|454aa|down_0|AP018922.1_1198700_1200062_-	COG4485, COG4485, Predicted membrane protein [Function unknown]	NA|295aa|down_1|AP018922.1_1201707_1202592_+	PRK09563, rbgA, GTPase YlqF; Reviewed	NA|256aa|down_2|AP018922.1_1202575_1203343_+	cd07182, RNase_HII_bacteria_HII_like, Bacterial Ribonuclease HII-like	NA|389aa|down_3|AP018922.1_1203451_1204618_+	PRK00696, sucC, ADP-forming succinate--CoA ligase subunit beta	NA|303aa|down_4|AP018922.1_1204639_1205548_+	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated	NA|373aa|down_5|AP018922.1_1205774_1206893_+	pfam01476, LysM, LysM domain	NA|415aa|down_6|AP018922.1_1206920_1208165_+	pfam02388, FemAB, FemAB family	NA|291aa|down_7|AP018922.1_1208337_1209210_+	COG0758, Smf, Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake [DNA replication, recombination, and repair / Intracellular trafficking and secretion]	NA|690aa|down_8|AP018922.1_1209389_1211459_+	PRK05582, PRK05582, type I DNA topoisomerase	NA|436aa|down_9|AP018922.1_1211614_1212922_+	PRK05335, PRK05335, tRNA (uracil-5-)-methyltransferase Gid; Reviewed
GCA_003573855.1_ASM357385v1	AP018922	Staphylococcus aureus JMUB1273 DNA, complete genome	7	1911452-1911536	5	CRISPRCasFinder	no	DEDDh	DinG,cas3,DEDDh,csa3,WYL	Unclear	TGTTGGGTCCCACACCCCAACTTGCA	26	0	0	NA	NA	NA	1	1	Orphan	DinG,cas3,DEDDh,csa3,WYL	NA|92aa|up_6|AP018922.1_1905594_1905870_+,NA|129aa|up_1|AP018922.1_1909851_1910238_-,NA|138aa|down_1|AP018922.1_1913278_1913692_-	NA|416aa|up_9|AP018922.1_1903517_1904765_-	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29)	NA|69aa|up_8|AP018922.1_1904776_1904983_-	COG4840, COG4840, Uncharacterized protein conserved in bacteria [Function unknown]	NA|155aa|up_7|AP018922.1_1905123_1905588_+	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|92aa|up_6|AP018922.1_1905594_1905870_+	NA	NA|406aa|up_5|AP018922.1_1906147_1907365_+	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair]	NA|210aa|up_4|AP018922.1_1907476_1908106_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|348aa|up_3|AP018922.1_1908095_1909139_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|234aa|up_2|AP018922.1_1909135_1909837_-	COG4758, COG4758, Predicted membrane protein [Function unknown]	NA|129aa|up_1|AP018922.1_1909851_1910238_-	NA	NA|253aa|up_0|AP018922.1_1910454_1911213_-	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|329aa|down_0|AP018922.1_1911802_1912789_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|138aa|down_1|AP018922.1_1913278_1913692_-	NA	NA|244aa|down_2|AP018922.1_1913916_1914648_-	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|438aa|down_3|AP018922.1_1914649_1915963_-	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|167aa|down_4|AP018922.1_1916254_1916755_+	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	DEDDh|185aa|down_5|AP018922.1_1917144_1917699_+	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|357aa|down_6|AP018922.1_1917765_1918836_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|177aa|down_7|AP018922.1_1919082_1919613_-	pfam11667, DUF3267, Putative zincin peptidase	NA|454aa|down_8|AP018922.1_1919782_1921144_-	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]	NA|316aa|down_9|AP018922.1_1921224_1922172_-	PRK13337, PRK13337, putative lipid kinase; Reviewed
GCA_003573855.1_ASM357385v1	AP018922	Staphylococcus aureus JMUB1273 DNA, complete genome	8	2144262-2144351	6	CRISPRCasFinder	no	csa3	DinG,cas3,DEDDh,csa3,WYL	Type I-A	CAACTTTAGTTGTTAGGGGCTCTT	24	0	0	NA	NA	NA	1	1	Orphan	DinG,cas3,DEDDh,csa3,WYL	NA|77aa|up_5|AP018922.1_2139135_2139366_-,NA|364aa|up_0|AP018922.1_2143153_2144245_+,NA|53aa|down_1|AP018922.1_2145470_2145629_+	NA|237aa|up_9|AP018922.1_2134745_2135456_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|AP018922.1_2135576_2136020_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|AP018922.1_2136219_2136633_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|AP018922.1_2137090_2138464_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|AP018922.1_2139135_2139366_-	NA	NA|313aa|up_4|AP018922.1_2139396_2140335_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|AP018922.1_2140768_2141434_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|AP018922.1_2141585_2141906_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|AP018922.1_2141907_2142888_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|AP018922.1_2143153_2144245_+	NA	NA|57aa|down_0|AP018922.1_2145307_2145478_+	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|53aa|down_1|AP018922.1_2145470_2145629_+	NA	NA|286aa|down_2|AP018922.1_2146286_2147144_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_3|AP018922.1_2147211_2147994_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_4|AP018922.1_2148225_2150031_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_5|AP018922.1_2150711_2152250_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_6|AP018922.1_2152284_2154417_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_7|AP018922.1_2154428_2154863_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_8|AP018922.1_2154862_2155969_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|2485aa|down_9|AP018922.1_2156287_2163742_-	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain
GCA_003573855.1_ASM357385v1	AP018922	Staphylococcus aureus JMUB1273 DNA, complete genome	9	2556665-2556772	7	CRISPRCasFinder	no		DinG,cas3,DEDDh,csa3,WYL	Orphan	ATTATTATAAATAATAAGTACACTACGGTTTACAGTTGG	39	0	0	NA	NA	NA	1	1	Orphan	DinG,cas3,DEDDh,csa3,WYL	NA|64aa|up_1|AP018922.1_2553656_2553848_+,NA|166aa|down_7|AP018922.1_2564781_2565279_-	NA|57aa|up_9|AP018922.1_2544915_2545086_-	pfam12669, P12, Virus attachment protein p12 family	NA|597aa|up_8|AP018922.1_2545098_2546889_-	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]	NA|45aa|up_7|AP018922.1_2546958_2547093_-	pfam02421, FeoB_N, Ferrous iron transport protein B	NA|76aa|up_6|AP018922.1_2547104_2547332_-	COG1918, FeoA, Fe2+ transport system protein A [Inorganic ion transport and metabolism]	NA|830aa|up_5|AP018922.1_2547547_2550037_-	COG2409, COG2409, Predicted drug exporters of the RND superfamily [General function prediction only]	NA|183aa|up_4|AP018922.1_2550181_2550730_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|515aa|up_3|AP018922.1_2551084_2552629_-	PRK03137, PRK03137, 1-pyrroline-5-carboxylate dehydrogenase; Provisional	NA|200aa|up_2|AP018922.1_2552818_2553418_-	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates	NA|64aa|up_1|AP018922.1_2553656_2553848_+	NA	NA|803aa|up_0|AP018922.1_2554087_2556496_+	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B	NA|69aa|down_0|AP018922.1_2556844_2557051_+	COG2608, CopZ, Copper chaperone [Inorganic ion transport and metabolism]	NA|333aa|down_1|AP018922.1_2557140_2558139_-	PRK08605, PRK08605, D-lactate dehydrogenase; Validated	NA|385aa|down_2|AP018922.1_2558161_2559316_-	PRK08068, PRK08068, transaminase; Reviewed	NA|503aa|down_3|AP018922.1_2559742_2561251_-	COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]	NA|288aa|down_4|AP018922.1_2561262_2562126_-	COG1562, ERG9, Phytoene/squalene synthetase [Lipid metabolism]	NA|376aa|down_5|AP018922.1_2562162_2563290_-	cd00761, Glyco_tranf_GTA_type, Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold	NA|498aa|down_6|AP018922.1_2563295_2564789_-	COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]	NA|166aa|down_7|AP018922.1_2564781_2565279_-	NA	NA|256aa|down_8|AP018922.1_2565444_2566212_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|604aa|down_9|AP018922.1_2566572_2568384_-	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]
GCA_003573855.1_ASM357385v1	AP018922	Staphylococcus aureus JMUB1273 DNA, complete genome	10	2687303-2687438	8	CRISPRCasFinder	no		DinG,cas3,DEDDh,csa3,WYL	Orphan	TTTCGTCGTCCCACCCCAACTTGCA	25	2	11	2687328-2687357|2687328-2687357|2687328-2687357|2687328-2687357|2687328-2687357|2687328-2687357|2687328-2687357|2687328-2687357|2687328-2687357|2687383-2687413|2687383-2687413	AP018922.1_756964-756935|AP018922.1_803468-803497|AP018922.1_846847-846876|AP018922.1_1038126-1038155|AP018922.1_1412391-1412420|AP018922.1_1912997-1913026|AP018922.1_2099763-2099734|AP018922.1_2291940-2291911|AP018922.1_2687439-2687468|AP018922.1_262017-261987|AP018922.1_1605987-1605957	NA	2	2	Orphan	DinG,cas3,DEDDh,csa3,WYL	NA,NA	NA|167aa|up_9|AP018922.1_2679280_2679781_-	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|256aa|up_8|AP018922.1_2680015_2680783_-	COG4464, CapC, Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|231aa|up_7|AP018922.1_2680779_2681472_-	cd05387, BY-kinase, bacterial tyrosine-kinase	NA|221aa|up_6|AP018922.1_2681488_2682151_-	COG3944, COG3944, Capsular polysaccharide biosynthesis protein [Cell envelope biogenesis, outer membrane]	NA|187aa|up_5|AP018922.1_2682999_2683560_-	pfam18665, TetR_C_37, Tetracyclin repressor-like, C-terminal domain	NA|371aa|up_4|AP018922.1_2683849_2684962_+	TIGR03937, Poly-beta-16-N-acetyl-D-glucosamine_synthase, poly-beta-1,6 N-acetyl-D-glucosamine synthase	NA|102aa|up_3|AP018922.1_2684925_2685231_+	TIGR03932, IcaD_partial, intracellular adhesion protein D	NA|71aa|up_2|AP018922.1_2685227_2685440_+	TIGR03933, Poly-beta-16-N-acetyl-D-glucosamine_N-deacetylase, intercellular adhesin biosynthesis polysaccharide N-deacetylase	NA|193aa|up_1|AP018922.1_2685521_2686100_+	TIGR03933, Poly-beta-16-N-acetyl-D-glucosamine_N-deacetylase, intercellular adhesin biosynthesis polysaccharide N-deacetylase	NA|351aa|up_0|AP018922.1_2686086_2687139_+	COG3936, COG3936, Protein involved in polysaccharide intercellular adhesin (PIA) synthesis/biofilm formation [Carbohydrate transport and metabolism]	NA|682aa|down_0|AP018922.1_2687585_2689631_-	COG1075, LipA, Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]	NA|211aa|down_1|AP018922.1_2690710_2691343_-	PRK02759, PRK02759, bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE	NA|253aa|down_2|AP018922.1_2691339_2692098_-	PRK02083, PRK02083, imidazole glycerol phosphate synthase subunit HisF; Provisional	NA|235aa|down_3|AP018922.1_2692094_2692799_-	PRK13587, PRK13587, 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional	NA|193aa|down_4|AP018922.1_2692791_2693370_-	PRK13142, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional	NA|193aa|down_5|AP018922.1_2693366_2693945_-	cd07914, IGPD, Imidazoleglycerol-phosphate dehydratase	NA|338aa|down_6|AP018922.1_2693913_2694927_-	COG0079, HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]	NA|419aa|down_7|AP018922.1_2694942_2696199_-	PRK13770, PRK13770, histidinol dehydrogenase; Provisional	NA|205aa|down_8|AP018922.1_2696185_2696800_-	PRK13584, hisG, ATP phosphoribosyltransferase	NA|273aa|down_9|AP018922.1_2696817_2697636_-	PRK12294, hisZ, ATP phosphoribosyltransferase regulatory subunit; Provisional
