assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003544875.1_ASM354487v1	CP032093	Vibrio alfacsensis strain CAIM 1831 chromosome I, complete sequence	2	1352523-1353262	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,RT,csx16,csx1,cas10,csm3gr7,csx10gr5,cas6	csa3,DEDDh,csx1,cas3,DinG,cas2,cas1,RT,csx16,cas10,csm3gr7,csx10gr5,cas6,csm4gr5	Type III-B,Type III-C,Type III-D,Type III-A	GTATTCGACATGCCCAGATTAGATGGGATTAAGAC,GTATTCGACATGCCCAGATTAGATGGGATTAAGAC,GTATTCGACATGCCCAGATTAGATGGGATTAAGAC	35,35,35	0	0	NA	NA	NA:NA:NA	9,10,10	10	TypeIII-B,TypeIII-C,TypeIII-D,TypeIII-A	csa3,DEDDh,csx1,cas3,DinG,cas2,cas1,RT,csx16,cas10,csm3gr7,csx10gr5,cas6,csm4gr5,WYL	NA|185aa|up_6|CP032093.1_1344945_1345500_+,NA|94aa|up_5|CP032093.1_1345538_1345820_+,NA|62aa|up_3|CP032093.1_1346469_1346655_-,NA|339aa|down_3|CP032093.1_1355926_1356943_-,NA|208aa|down_4|CP032093.1_1357596_1358220_-,NA|318aa|down_5|CP032093.1_1358253_1359207_+	NA|217aa|up_9|CP032093.1_1341380_1342031_+	pfam07070, Spo0M, SpoOM protein	NA|416aa|up_8|CP032093.1_1342375_1343623_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|394aa|up_7|CP032093.1_1343624_1344806_+	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|185aa|up_6|CP032093.1_1344945_1345500_+	NA	NA|94aa|up_5|CP032093.1_1345538_1345820_+	NA	NA|148aa|up_4|CP032093.1_1345914_1346358_+	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|62aa|up_3|CP032093.1_1346469_1346655_-	NA	NA|334aa|up_2|CP032093.1_1349595_1350597_-	COG4248, COG4248, Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains [General function prediction only]	NA|328aa|up_1|CP032093.1_1350589_1351573_-	pfam13672, PP2C_2, Protein phosphatase 2C	NA|203aa|up_0|CP032093.1_1351551_1352160_-	COG4245, TerY, Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]	cas2|94aa|down_0|CP032093.1_1353554_1353836_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|541aa|down_1|CP032093.1_1353849_1355472_-	cd09634, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1	RT|171aa|down_2|CP032093.1_1355426_1355939_-	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|339aa|down_3|CP032093.1_1355926_1356943_-	NA	NA|208aa|down_4|CP032093.1_1357596_1358220_-	NA	NA|318aa|down_5|CP032093.1_1358253_1359207_+	NA	csx16|99aa|down_6|CP032093.1_1359250_1359547_+	pfam09652, Cas_VVA1548, Putative CRISPR-associated protein (Cas_VVA1548)	csx1|408aa|down_7|CP032093.1_1359701_1360925_-	pfam09002, DUF1887, Domain of unknown function (DUF1887)	NA|107aa|down_8|CP032093.1_1361285_1361606_-	COG3339, COG3339, Uncharacterized conserved protein [Function unknown]	NA|572aa|down_9|CP032093.1_1361750_1363466_-	TIGR02668, moaA_archaeal, probable molybdenum cofactor biosynthesis protein A, archaeal
GCA_003544875.1_ASM354487v1	CP032093	Vibrio alfacsensis strain CAIM 1831 chromosome I, complete sequence	3	1357246-1357562	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,RT,csx16,csx1,cas10,csm3gr7,csx10gr5,cas6	csa3,DEDDh,csx1,cas3,DinG,cas2,cas1,RT,csx16,cas10,csm3gr7,csx10gr5,cas6,csm4gr5	Type III-B,Type III-C,Type III-D,Type III-A	GTATTCGACGTGCCCAGATTAGATGGGATTAAGAC,GTATTCGACGTGCCCAGATTAGATGGGATTAAGAC,GTATTCGACGTGCCCAGATTAGATGGGATTAAGAC	35,35,35	0	0	NA	NA	NA:NA:NA	3,4,4	4	TypeIII-B,TypeIII-C,TypeIII-D,TypeIII-A	csa3,DEDDh,csx1,cas3,DinG,cas2,cas1,RT,csx16,cas10,csm3gr7,csx10gr5,cas6,csm4gr5,WYL	NA|94aa|up_9|CP032093.1_1345538_1345820_+,NA|62aa|up_7|CP032093.1_1346469_1346655_-,NA|339aa|up_0|CP032093.1_1355926_1356943_-,NA|208aa|down_0|CP032093.1_1357596_1358220_-,NA|318aa|down_1|CP032093.1_1358253_1359207_+,csx10gr5|137aa|down_8|CP032093.1_1366098_1366509_+	NA|94aa|up_9|CP032093.1_1345538_1345820_+	NA	NA|148aa|up_8|CP032093.1_1345914_1346358_+	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|62aa|up_7|CP032093.1_1346469_1346655_-	NA	NA|334aa|up_6|CP032093.1_1349595_1350597_-	COG4248, COG4248, Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains [General function prediction only]	NA|328aa|up_5|CP032093.1_1350589_1351573_-	pfam13672, PP2C_2, Protein phosphatase 2C	NA|203aa|up_4|CP032093.1_1351551_1352160_-	COG4245, TerY, Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]	cas2|94aa|up_3|CP032093.1_1353554_1353836_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|541aa|up_2|CP032093.1_1353849_1355472_-	cd09634, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1	RT|171aa|up_1|CP032093.1_1355426_1355939_-	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|339aa|up_0|CP032093.1_1355926_1356943_-	NA	NA|208aa|down_0|CP032093.1_1357596_1358220_-	NA	NA|318aa|down_1|CP032093.1_1358253_1359207_+	NA	csx16|99aa|down_2|CP032093.1_1359250_1359547_+	pfam09652, Cas_VVA1548, Putative CRISPR-associated protein (Cas_VVA1548)	csx1|408aa|down_3|CP032093.1_1359701_1360925_-	pfam09002, DUF1887, Domain of unknown function (DUF1887)	NA|107aa|down_4|CP032093.1_1361285_1361606_-	COG3339, COG3339, Uncharacterized conserved protein [Function unknown]	NA|572aa|down_5|CP032093.1_1361750_1363466_-	TIGR02668, moaA_archaeal, probable molybdenum cofactor biosynthesis protein A, archaeal	cas10|592aa|down_6|CP032093.1_1363754_1365530_+	TIGR02577, thermophile-specific_DNA_repair_system, CRISPR-associated protein Cas10/Cmr2, subtype III-B	csm3gr7|190aa|down_7|CP032093.1_1365529_1366099_+	pfam03787, RAMPs, RAMP superfamily	csx10gr5|137aa|down_8|CP032093.1_1366098_1366509_+	NA	NA|325aa|down_9|CP032093.1_1366705_1367680_+	TIGR02674, cas_cyan_RAMP_2, CRISPR-associated RAMP protein, Csx10 family
GCA_003544875.1_ASM354487v1	CP032093	Vibrio alfacsensis strain CAIM 1831 chromosome I, complete sequence	4	1374268-1374730	3,4,3	PILER-CR,CRISPRCasFinder,CRT	no	RT,csx16,csx1,cas10,csm3gr7,csx10gr5,cas6	csa3,DEDDh,csx1,cas3,DinG,cas2,cas1,RT,csx16,cas10,csm3gr7,csx10gr5,cas6,csm4gr5	Type III-B,Type III-C,Type III-D,Type III-A	GTATCAGACGTGCCCAGATTAGATGGGATTAAGAC,GTATCAGACGTGCCCAGATTAGATGGGATTAAGAC,GTATCAGACGTGCCCAGATTAGATGGGATTAAGAC	35,35,35	0	0	NA	NA	NA:NA:NA	5,6,6	6	TypeIII-B,TypeIII-C,TypeIII-D,TypeIII-A	csa3,DEDDh,csx1,cas3,DinG,cas2,cas1,RT,csx16,cas10,csm3gr7,csx10gr5,cas6,csm4gr5,WYL	csx10gr5|137aa|up_9|CP032093.1_1366098_1366509_+,NA|171aa|up_6|CP032093.1_1369058_1369571_+,NA|65aa|up_0|CP032093.1_1373840_1374035_-,NA|225aa|down_2|CP032093.1_1377109_1377784_-,NA|740aa|down_4|CP032093.1_1379218_1381438_-,NA|77aa|down_5|CP032093.1_1381718_1381949_+,NA|63aa|down_6|CP032093.1_1382053_1382242_-,NA|226aa|down_7|CP032093.1_1382687_1383365_+,NA|69aa|down_9|CP032093.1_1383999_1384206_+	csx10gr5|137aa|up_9|CP032093.1_1366098_1366509_+	NA	NA|325aa|up_8|CP032093.1_1366705_1367680_+	TIGR02674, cas_cyan_RAMP_2, CRISPR-associated RAMP protein, Csx10 family	csm3gr7|460aa|up_7|CP032093.1_1367679_1369059_+	pfam03787, RAMPs, RAMP superfamily	NA|171aa|up_6|CP032093.1_1369058_1369571_+	NA	csm3gr7|62aa|up_5|CP032093.1_1369570_1369756_+	TIGR03986, CRISPR-associated_protein, CRISPR-associated protein	csm3gr7|170aa|up_4|CP032093.1_1369692_1370202_+	TIGR03986, CRISPR-associated_protein, CRISPR-associated protein	csm3gr7|519aa|up_3|CP032093.1_1370143_1371700_+	TIGR03986, CRISPR-associated_protein, CRISPR-associated protein	cas6|302aa|up_2|CP032093.1_1371704_1372610_+	pfam10040, CRISPR_Cas6, CRISPR-associated endoribonuclease Cas6	csx1|335aa|up_1|CP032093.1_1372701_1373706_+	cd09741, Csx1_III-U, CRISPR/Cas system-associated protein Csx1	NA|65aa|up_0|CP032093.1_1373840_1374035_-	NA	NA|233aa|down_0|CP032093.1_1374883_1375582_+	COG3596, COG3596, Predicted GTPase [General function prediction only]	NA|320aa|down_1|CP032093.1_1375594_1376554_+	COG3596, COG3596, Predicted GTPase [General function prediction only]	NA|225aa|down_2|CP032093.1_1377109_1377784_-	NA	NA|463aa|down_3|CP032093.1_1377848_1379237_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|740aa|down_4|CP032093.1_1379218_1381438_-	NA	NA|77aa|down_5|CP032093.1_1381718_1381949_+	NA	NA|63aa|down_6|CP032093.1_1382053_1382242_-	NA	NA|226aa|down_7|CP032093.1_1382687_1383365_+	NA	NA|110aa|down_8|CP032093.1_1383518_1383848_+	COG1585, COG1585, Membrane protein implicated in regulation of membrane protease activity [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]	NA|69aa|down_9|CP032093.1_1383999_1384206_+	NA
GCA_003544875.1_ASM354487v1	CP032093	Vibrio alfacsensis strain CAIM 1831 chromosome I, complete sequence	5	1442124-1442502	5,4,4	CRISPRCasFinder,CRT,PILER-CR	no	csx1,cas2,cas1,csm3gr7,csm4gr5,cas10	csa3,DEDDh,csx1,cas3,DinG,cas2,cas1,RT,csx16,cas10,csm3gr7,csx10gr5,cas6,csm4gr5	Type III-B,Type III-C,Type III-D,Type III-A	TCAACAGCCTATGCGGCTTCATATCTTGCGAC,TCAACAGCCTATGCGGCTTCATATCTTGCGAC,GTTTCAACAGCCTATGCGGCTTCATATCTTGCGAC	32,32,35	0	0	NA	NA	NA:NA:NA	5,5,4	5	TypeIII-B,TypeIII-C,TypeIII-D,TypeIII-A	csa3,DEDDh,csx1,cas3,DinG,cas2,cas1,RT,csx16,cas10,csm3gr7,csx10gr5,cas6,csm4gr5,WYL	NA|76aa|up_8|CP032093.1_1433384_1433612_-,NA|69aa|up_4|CP032093.1_1438256_1438463_-,NA|75aa|up_3|CP032093.1_1438713_1438938_-,NA|546aa|up_2|CP032093.1_1439041_1440679_+,NA|273aa|up_1|CP032093.1_1440714_1441533_+,NA|149aa|up_0|CP032093.1_1441556_1442003_+,cas10|446aa|down_9|CP032093.1_1453052_1454390_-	NA|476aa|up_9|CP032093.1_1431819_1433247_-	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion]	NA|76aa|up_8|CP032093.1_1433384_1433612_-	NA	NA|502aa|up_7|CP032093.1_1434463_1435969_+	PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated	NA|239aa|up_6|CP032093.1_1435965_1436682_+	pfam01182, Glucosamine_iso, Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase	NA|483aa|up_5|CP032093.1_1436722_1438171_+	PRK09287, PRK09287, NADP-dependent phosphogluconate dehydrogenase	NA|69aa|up_4|CP032093.1_1438256_1438463_-	NA	NA|75aa|up_3|CP032093.1_1438713_1438938_-	NA	NA|546aa|up_2|CP032093.1_1439041_1440679_+	NA	NA|273aa|up_1|CP032093.1_1440714_1441533_+	NA	NA|149aa|up_0|CP032093.1_1441556_1442003_+	NA	csx1|383aa|down_0|CP032093.1_1442753_1443902_-	pfam09002, DUF1887, Domain of unknown function (DUF1887)	cas2|92aa|down_1|CP032093.1_1443964_1444240_-	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2	cas1|939aa|down_2|CP032093.1_1444236_1447053_-	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	NA|164aa|down_3|CP032093.1_1447049_1447541_-	pfam16473, DUF5051, 3' exoribonuclease, RNase T-like	csm3gr7|230aa|down_4|CP032093.1_1447613_1448303_-	TIGR03986, CRISPR-associated_protein, CRISPR-associated protein	csm3gr7|404aa|down_5|CP032093.1_1448523_1449735_-	TIGR03986, CRISPR-associated_protein, CRISPR-associated protein	csm3gr7|230aa|down_6|CP032093.1_1449737_1450427_-	cd09726, RAMP_I_III, CRISPR/Cas system-associated RAMP superfamily protein	csm3gr7|268aa|down_7|CP032093.1_1450398_1451202_-	COG1337, COG1337, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm4gr5|617aa|down_8|CP032093.1_1451205_1453056_-	cd09726, RAMP_I_III, CRISPR/Cas system-associated RAMP superfamily protein	cas10|446aa|down_9|CP032093.1_1453052_1454390_-	NA
