assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003491325.1_ASM349132v1	CP022881	Staphylococcus sp. M0911 chromosome, complete genome	1	97041-97801	1,1,1,2	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	cas9,cas1,cas2	cas9,cas1,cas2,WYL,csa3,DEDDh,cas3,DinG	Type II-B, or Type II-C?,Type II-A,Type II-C, Type II-B	GTTTTAGTACTCTGTAATTTTAGGTATGAGTGAAAC,GTTTTAGTACTCTGTAATTTTAGGTATGAGTGAAAC,GTTTTAGTACTCTGTAATTTTAGGTATGAGTGAAAC,GTTTTAGTACTCTGTAATTTTAGGTATGAGTGAAAC	36,36,36,36	0	0	NA	NA	NA:NA:NA:NA	9,11,11,9	11	TypeII-B,orTypeII-C?,TypeII-A,TypeII-C,TypeII-B	cas9,cas1,cas2,WYL,csa3,DEDDh,cas3,DinG	NA,NA|336aa|down_3|CP022881.1_102448_103456_+	NA|280aa|up_9|CP022881.1_86142_86982_+	COG0253, DapF, Diaminopimelate epimerase [Amino acid transport and metabolism]	NA|272aa|up_8|CP022881.1_86981_87797_+	cd08261, Zn_ADH7, Alcohol dehydrogenases of the MDR family	NA|433aa|up_7|CP022881.1_87789_89088_+	pfam10100, DUF2338, Uncharacterized protein conserved in bacteria (DUF2338)	NA|533aa|up_6|CP022881.1_89149_90748_+	TIGR02294, Nickel-binding_periplasmic_protein, nickel ABC transporter, nickel/metallophore periplasmic binding protein	NA|312aa|up_5|CP022881.1_90760_91696_+	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|290aa|up_4|CP022881.1_91692_92562_+	TIGR02790, Nickel_transport_system_permease_protein_nikC	NA|272aa|up_3|CP022881.1_92558_93374_+	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|250aa|up_2|CP022881.1_93366_94116_+	COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|393aa|up_1|CP022881.1_94127_95306_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|313aa|up_0|CP022881.1_95945_96884_+	cd08346, PcpA_N_like, N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins	cas9|1055aa|down_0|CP022881.1_98052_101217_+	cd09643, Csn1, CRISPR/Cas system-associated protein Cas9	cas1|301aa|down_1|CP022881.1_101219_102122_+	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas2|103aa|down_2|CP022881.1_102126_102435_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	NA|336aa|down_3|CP022881.1_102448_103456_+	NA	NA|578aa|down_4|CP022881.1_103852_105586_+	pfam09848, DUF2075, Uncharacterized conserved protein (DUF2075)	NA|113aa|down_5|CP022881.1_105591_105930_+	cd11537, NTP-PPase_RS21-C6_like, Nucleoside Triphosphate Pyrophosphohydrolase (EC 3	NA|620aa|down_6|CP022881.1_106048_107908_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|652aa|down_7|CP022881.1_107987_109943_+	COG1299, FruA, Phosphotransferase system, fructose-specific IIC component [Carbohydrate transport and metabolism]	NA|312aa|down_8|CP022881.1_109957_110893_+	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|279aa|down_9|CP022881.1_111145_111982_+	PRK02463, PRK02463, OxaA-like protein precursor; Provisional
GCA_003491325.1_ASM349132v1	CP022881	Staphylococcus sp. M0911 chromosome, complete genome	2	103475-103839	2,3	CRT,PILER-CR	no	cas9,cas1,cas2	cas9,cas1,cas2,WYL,csa3,DEDDh,cas3,DinG	Type II-B, or Type II-C?,Type II-A,Type II-C, Type II-B	AGTTTTAGTACTCTGTAATTTTAGGTATGAGTGAAA,AGTTTTAGTACTCTGTAATTTTAGGTATGAGTGAAAC	36,37	0	0	NA	NA	NA:NA	5,4	5	TypeII-B,orTypeII-C?,TypeII-A,TypeII-C,TypeII-B	cas9,cas1,cas2,WYL,csa3,DEDDh,cas3,DinG	NA|336aa|up_0|CP022881.1_102448_103456_+,NA|76aa|down_6|CP022881.1_112416_112644_-,NA|269aa|down_9|CP022881.1_114151_114958_+	NA|312aa|up_9|CP022881.1_90760_91696_+	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|290aa|up_8|CP022881.1_91692_92562_+	TIGR02790, Nickel_transport_system_permease_protein_nikC	NA|272aa|up_7|CP022881.1_92558_93374_+	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|250aa|up_6|CP022881.1_93366_94116_+	COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|393aa|up_5|CP022881.1_94127_95306_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|313aa|up_4|CP022881.1_95945_96884_+	cd08346, PcpA_N_like, N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins	cas9|1055aa|up_3|CP022881.1_98052_101217_+	cd09643, Csn1, CRISPR/Cas system-associated protein Cas9	cas1|301aa|up_2|CP022881.1_101219_102122_+	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas2|103aa|up_1|CP022881.1_102126_102435_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	NA|336aa|up_0|CP022881.1_102448_103456_+	NA	NA|578aa|down_0|CP022881.1_103852_105586_+	pfam09848, DUF2075, Uncharacterized conserved protein (DUF2075)	NA|113aa|down_1|CP022881.1_105591_105930_+	cd11537, NTP-PPase_RS21-C6_like, Nucleoside Triphosphate Pyrophosphohydrolase (EC 3	NA|620aa|down_2|CP022881.1_106048_107908_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|652aa|down_3|CP022881.1_107987_109943_+	COG1299, FruA, Phosphotransferase system, fructose-specific IIC component [Carbohydrate transport and metabolism]	NA|312aa|down_4|CP022881.1_109957_110893_+	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|279aa|down_5|CP022881.1_111145_111982_+	PRK02463, PRK02463, OxaA-like protein precursor; Provisional	NA|76aa|down_6|CP022881.1_112416_112644_-	NA	NA|203aa|down_7|CP022881.1_112826_113435_+	pfam01944, SpoIIM, Stage II sporulation protein M	NA|111aa|down_8|CP022881.1_113484_113817_+	pfam13630, SdpI, SdpI/YfhL protein family	NA|269aa|down_9|CP022881.1_114151_114958_+	NA
GCA_003491325.1_ASM349132v1	CP022881	Staphylococcus sp. M0911 chromosome, complete genome	3	545938-546024	2	CRISPRCasFinder	no		cas9,cas1,cas2,WYL,csa3,DEDDh,cas3,DinG	Orphan	GTACTTCCATTTTCAATGGTTAG	23	0	0	NA	NA	NA	1	1	Orphan	cas9,cas1,cas2,WYL,csa3,DEDDh,cas3,DinG	NA,NA	NA|802aa|up_9|CP022881.1_533355_535761_+	COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and conversion]	NA|105aa|up_8|CP022881.1_535763_536078_+	cd03530, Rieske_NirD_small_Bacillus, Small subunit of nitrite reductase (NirD) family, Rieske domain; composed of proteins similar to the Bacillus subtilis small subunit of assimilatory nitrite reductase containing a Rieske domain	NA|309aa|up_7|CP022881.1_536068_536995_+	cd11642, SUMT, Uroporphyrin-III C-methyltransferase (also known as S-Adenosyl-L-methionine:uroporphyrinogen III methyltransferase, SUMT)	NA|1228aa|up_6|CP022881.1_537172_540856_+	COG5013, NarG, Nitrate reductase alpha subunit [Energy production and conversion]	NA|518aa|up_5|CP022881.1_540845_542399_+	COG1140, NarY, Nitrate reductase beta subunit [Energy production and conversion]	NA|192aa|up_4|CP022881.1_542391_542967_+	COG2180, NarJ, Nitrate reductase delta subunit [Energy production and conversion]	NA|226aa|up_3|CP022881.1_542959_543637_+	pfam02665, Nitrate_red_gam, Nitrate reductase gamma subunit	NA|151aa|up_2|CP022881.1_543658_544111_+	pfam13185, GAF_2, GAF domain	NA|344aa|up_1|CP022881.1_544120_545152_+	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|218aa|up_0|CP022881.1_545174_545828_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|384aa|down_0|CP022881.1_546324_547476_+	COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport and metabolism]	NA|139aa|down_1|CP022881.1_547529_547946_-	COG0071, IbpA, Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]	NA|149aa|down_2|CP022881.1_548184_548631_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|210aa|down_3|CP022881.1_548795_549425_+	cd02137, MhqN-like, nitroreductase family protein similar to the NAD(P)H nitroreductase MhqN	NA|122aa|down_4|CP022881.1_549553_549919_+	pfam11337, DUF3139, Protein of unknown function (DUF3139)	NA|426aa|down_5|CP022881.1_550168_551446_+	PRK11283, gltP, glutamate/aspartate:proton symporter; Provisional	NA|115aa|down_6|CP022881.1_551800_552145_-	pfam16230, DUF4889, Domain of unknown function (DUF4889)	NA|141aa|down_7|CP022881.1_552521_552944_-	COG3871, COG3871, Uncharacterized stress protein (general stress protein 26) [General function prediction only]	NA|85aa|down_8|CP022881.1_556008_556263_-	pfam08349, DUF1722, Protein of unknown function (DUF1722)	NA|480aa|down_9|CP022881.1_556451_557891_+	TIGR01996, Includes:_Phosphotransferase_enzyme_IIB_component, PTS system, sucrose-specific IIBC component
GCA_003491325.1_ASM349132v1	CP022881	Staphylococcus sp. M0911 chromosome, complete genome	4	551641-551727	3	CRISPRCasFinder	no		cas9,cas1,cas2,WYL,csa3,DEDDh,cas3,DinG	Orphan	AAGTACTTCCATTTTTAATGGTT	23	0	0	NA	NA	NA	1	1	Orphan	cas9,cas1,cas2,WYL,csa3,DEDDh,cas3,DinG	NA,NA	NA|226aa|up_9|CP022881.1_542959_543637_+	pfam02665, Nitrate_red_gam, Nitrate reductase gamma subunit	NA|151aa|up_8|CP022881.1_543658_544111_+	pfam13185, GAF_2, GAF domain	NA|344aa|up_7|CP022881.1_544120_545152_+	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|218aa|up_6|CP022881.1_545174_545828_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|384aa|up_5|CP022881.1_546324_547476_+	COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport and metabolism]	NA|139aa|up_4|CP022881.1_547529_547946_-	COG0071, IbpA, Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]	NA|149aa|up_3|CP022881.1_548184_548631_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|210aa|up_2|CP022881.1_548795_549425_+	cd02137, MhqN-like, nitroreductase family protein similar to the NAD(P)H nitroreductase MhqN	NA|122aa|up_1|CP022881.1_549553_549919_+	pfam11337, DUF3139, Protein of unknown function (DUF3139)	NA|426aa|up_0|CP022881.1_550168_551446_+	PRK11283, gltP, glutamate/aspartate:proton symporter; Provisional	NA|115aa|down_0|CP022881.1_551800_552145_-	pfam16230, DUF4889, Domain of unknown function (DUF4889)	NA|141aa|down_1|CP022881.1_552521_552944_-	COG3871, COG3871, Uncharacterized stress protein (general stress protein 26) [General function prediction only]	NA|85aa|down_2|CP022881.1_556008_556263_-	pfam08349, DUF1722, Protein of unknown function (DUF1722)	NA|480aa|down_3|CP022881.1_556451_557891_+	TIGR01996, Includes:_Phosphotransferase_enzyme_IIB_component, PTS system, sucrose-specific IIBC component	NA|316aa|down_4|CP022881.1_557959_558907_-	cd12827, EcCorA_ZntB-like_u2, uncharacterized bacterial subfamily of the Escherichia coli CorA-Salmonella typhimurium ZntB family	NA|203aa|down_5|CP022881.1_558968_559577_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|426aa|down_6|CP022881.1_559739_561017_+	COG1511, COG1511, Predicted membrane protein [Function unknown]	NA|142aa|down_7|CP022881.1_561135_561561_-	pfam13924, Lipocalin_5, Lipocalin-like domain	NA|252aa|down_8|CP022881.1_561597_562353_-	PRK12429, PRK12429, 3-hydroxybutyrate dehydrogenase; Provisional	NA|305aa|down_9|CP022881.1_562652_563567_+	COG0583, LysR, Transcriptional regulator [Transcription]
GCA_003491325.1_ASM349132v1	CP022881	Staphylococcus sp. M0911 chromosome, complete genome	6	1332102-1332204	5	CRISPRCasFinder	no	DinG	cas9,cas1,cas2,WYL,csa3,DEDDh,cas3,DinG	Type IV-A	AGTACCTAACTTCTTTCTTTGTAAGAAGAAGGT	33	0	0	NA	NA	NA	1	1	Orphan	cas9,cas1,cas2,WYL,csa3,DEDDh,cas3,DinG	NA,NA	NA|323aa|up_9|CP022881.1_1320253_1321222_+	COG4955, COG4955, Uncharacterized protein conserved in bacteria [Function unknown]	NA|460aa|up_8|CP022881.1_1321202_1322582_+	COG0514, RecQ, Superfamily II DNA helicase [DNA replication, recombination, and repair]	NA|604aa|up_7|CP022881.1_1322733_1324545_+	cd00118, LysM, Lysin Motif is a small domain involved in binding peptidoglycan	NA|329aa|up_6|CP022881.1_1324738_1325725_+	TIGR04018, thioredoxin_reductase, putative bacillithiol system oxidoreductase, YpdA family	NA|325aa|up_5|CP022881.1_1325782_1326757_-	cd08964, L-asparaginase_II, Type II (periplasmic) bacterial L-asparaginase	NA|220aa|up_4|CP022881.1_1326833_1327493_+	PRK00023, cmk, (d)CMP kinase	NA|393aa|up_3|CP022881.1_1327776_1328955_+	PRK06676, rpsA, 30S ribosomal protein S1; Reviewed	NA|437aa|up_2|CP022881.1_1329130_1330441_+	PRK00093, PRK00093, GTP-binding protein Der; Reviewed	NA|333aa|up_1|CP022881.1_1330462_1331461_+	PRK00094, gpsA, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA|91aa|up_0|CP022881.1_1331631_1331904_+	cd13831, HU, histone-like DNA-binding protein HU	NA|191aa|down_0|CP022881.1_1332271_1332844_+	pfam07307, HEPPP_synt_1, Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1	NA|236aa|down_1|CP022881.1_1332845_1333553_+	TIGR02752, Demethylmenaquinone_methyltransferase, demethylmenaquinone methyltransferase	NA|328aa|down_2|CP022881.1_1333549_1334533_+	TIGR02748, Heptaprenyl_diphosphate_synthase_component_2, heptaprenyl diphosphate synthase component II	NA|150aa|down_3|CP022881.1_1334666_1335116_+	PRK00668, ndk, mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated	NA|389aa|down_4|CP022881.1_1335376_1336543_+	PRK05382, PRK05382, chorismate synthase; Validated	NA|355aa|down_5|CP022881.1_1336567_1337632_+	PRK00002, aroB, 3-dehydroquinate synthase; Reviewed	NA|433aa|down_6|CP022881.1_1337643_1338942_+	PRK02427, PRK02427, 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional	NA|415aa|down_7|CP022881.1_1338947_1340192_+	PRK11788, PRK11788, tetratricopeptide repeat protein; Provisional	NA|192aa|down_8|CP022881.1_1340207_1340783_+	COG5582, COG5582, Uncharacterized conserved protein [Function unknown]	NA|199aa|down_9|CP022881.1_1340772_1341369_+	COG4347, COG4347, Predicted membrane protein [Function unknown]
