assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003491245.1_ASM349124v1	CP016990	Aeromonas hydrophila strain ZYAH75 chromosome, complete genome	1	60319-60420	1	CRISPRCasFinder	no		WYL,cas3,DEDDh,csa3,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f	Orphan	AGCCTGGGAGTCATCAACGTCTGGAC	26	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,csa3,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f	NA|153aa|up_9|CP016990.1_48833_49292_+,NA|542aa|down_1|CP016990.1_61774_63400_-,NA|147aa|down_8|CP016990.1_73427_73868_-	NA|153aa|up_9|CP016990.1_48833_49292_+	NA	NA|300aa|up_8|CP016990.1_49561_50461_-	PRK11272, PRK11272, putative DMT superfamily transporter inner membrane protein; Provisional	NA|325aa|up_7|CP016990.1_50552_51527_+	cd08417, PBP2_Nitroaromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators that involved in the catabolism of nitroaromatic/naphthalene compounds and that of related regulators; contains the type 2 periplasmic binding fold	NA|338aa|up_6|CP016990.1_51505_52519_-	PRK12282, PRK12282, tryptophanyl-tRNA synthetase II; Reviewed	NA|145aa|up_5|CP016990.1_52708_53143_-	PRK15118, PRK15118, universal stress protein UspA	NA|396aa|up_4|CP016990.1_53609_54797_+	PRK13656, PRK13656, enoyl-[acyl-carrier-protein] reductase FabV	NA|597aa|up_3|CP016990.1_54814_56605_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|175aa|up_2|CP016990.1_56814_57339_+	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|396aa|up_1|CP016990.1_57496_58684_+	COG2081, COG2081, Predicted flavoproteins [General function prediction only]	NA|407aa|up_0|CP016990.1_58875_60096_-	cd17478, MFS_FsR, Fosmidomycin resistance protein of the Major Facilitator Superfamily of transporters	NA|229aa|down_0|CP016990.1_61061_61748_-	COG3121, FimC, P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]	NA|542aa|down_1|CP016990.1_61774_63400_-	NA	NA|825aa|down_2|CP016990.1_63404_65879_-	pfam15976, CooC_C, CS1-pili formation C-terminal	NA|221aa|down_3|CP016990.1_65929_66592_-	pfam18649, EcpB_C, EcpB C-terminal domain	NA|191aa|down_4|CP016990.1_66651_67224_-	pfam16449, MatB, Fimbrillin MatB	NA|208aa|down_5|CP016990.1_67826_68450_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|132aa|down_6|CP016990.1_69843_70239_+	PRK09413, PRK09413, IS2 repressor TnpA; Reviewed	NA|293aa|down_7|CP016990.1_70196_71075_+	PRK09409, PRK09409, IS2 transposase TnpB; Reviewed	NA|147aa|down_8|CP016990.1_73427_73868_-	NA	NA|558aa|down_9|CP016990.1_74040_75714_+	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms]
GCA_003491245.1_ASM349124v1	CP016990	Aeromonas hydrophila strain ZYAH75 chromosome, complete genome	2	647862-648005	2	CRISPRCasFinder	no		WYL,cas3,DEDDh,csa3,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f	Orphan	CTGCTGTTTGGCGGTATCTCCTTCTATATCCTGAGTCGCAAG	42	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,csa3,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f	NA,NA	NA|875aa|up_9|CP016990.1_631828_634453_+	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed	NA|416aa|up_8|CP016990.1_634469_635717_+	PRK06635, PRK06635, aspartate kinase; Reviewed	NA|63aa|up_7|CP016990.1_635810_635999_+	PRK01712, PRK01712, carbon storage regulator CsrA	NA|276aa|up_6|CP016990.1_637238_638066_-	PRK11669, pbpG, D-alanyl-D-alanine endopeptidase; Provisional	NA|222aa|up_5|CP016990.1_638204_638870_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|431aa|up_4|CP016990.1_638888_640181_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|951aa|up_3|CP016990.1_640367_643220_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|152aa|up_2|CP016990.1_643285_643741_-	pfam04364, DNA_pol3_chi, DNA polymerase III chi subunit, HolC	NA|503aa|up_1|CP016990.1_643903_645412_-	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|371aa|up_0|CP016990.1_645584_646697_+	TIGR04407, LptF_YjgP, LPS export ABC transporter permease LptF	NA|174aa|down_0|CP016990.1_648070_648592_-	pfam06271, RDD, RDD family	NA|479aa|down_1|CP016990.1_649273_650710_+	PRK10666, PRK10666, ammonium transporter AmtB	NA|451aa|down_2|CP016990.1_651046_652399_+	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]	NA|206aa|down_3|CP016990.1_652753_653371_-	COG2165, PulG, Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion]	NA|259aa|down_4|CP016990.1_653411_654188_+	COG0084, TatD, Mg-dependent DNase [DNA replication, recombination, and repair]	NA|425aa|down_5|CP016990.1_654413_655688_+	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism]	NA|57aa|down_6|CP016990.1_655811_655982_+	TIGR03510, conserved_hypothetical_protein, XapX domain	NA|258aa|down_7|CP016990.1_656373_657147_+	PRK05283, PRK05283, deoxyribose-phosphate aldolase; Provisional	NA|444aa|down_8|CP016990.1_657256_658588_+	PRK05820, deoA, thymidine phosphorylase; Reviewed	NA|403aa|down_9|CP016990.1_658602_659811_+	PRK05362, PRK05362, phosphopentomutase; Provisional
GCA_003491245.1_ASM349124v1	CP016990	Aeromonas hydrophila strain ZYAH75 chromosome, complete genome	3	707640-707744	3	CRISPRCasFinder	no		WYL,cas3,DEDDh,csa3,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f	Orphan	CTAAACGCCAAGGTTTGATCCGAATGAAATCTG	33	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,csa3,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f	NA,NA	NA|519aa|up_9|CP016990.1_699640_701197_+	PRK15097, PRK15097, cytochrome bd-I ubiquinol oxidase subunit CydA	NA|379aa|up_8|CP016990.1_701209_702346_+	PRK15003, PRK15003, cytochrome d ubiquinol oxidase subunit II	NA|39aa|up_7|CP016990.1_702360_702477_+	COG4890, COG4890, Predicted outer membrane lipoprotein [Function unknown]	NA|104aa|up_6|CP016990.1_702463_702775_+	pfam09600, Cyd_oper_YbgE, Cyd operon protein YbgE (Cyd_oper_YbgE)	NA|136aa|up_5|CP016990.1_702880_703288_+	TIGR02799, Acyl-CoA_thioesterase_YbgC, tol-pal system-associated acyl-CoA thioesterase	NA|230aa|up_4|CP016990.1_703277_703967_+	TIGR02796, Protein_TolQ, TolQ protein	NA|149aa|up_3|CP016990.1_703966_704413_+	TIGR02801, Protein_TolR, TolR protein	NA|388aa|up_2|CP016990.1_704418_705582_+	pfam06519, TolA, TolA C-terminal	NA|442aa|up_1|CP016990.1_705676_707002_+	PRK04792, tolB, Tol-Pal system protein TolB	NA|175aa|up_0|CP016990.1_707051_707576_+	PRK10802, PRK10802, peptidoglycan-associated lipoprotein Pal	NA|702aa|down_0|CP016990.1_710125_712231_-	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]	NA|358aa|down_1|CP016990.1_712371_713445_+	PRK09375, PRK09375, quinolinate synthase NadA	NA|289aa|down_2|CP016990.1_713514_714381_-	cd09020, D-hex-6-P-epi_like, D-hexose-6-phosphate epimerase-like	NA|332aa|down_3|CP016990.1_714496_715492_-	PRK15425, gapA, glyceraldehyde-3-phosphate dehydrogenase	NA|730aa|down_4|CP016990.1_715838_718028_+	PRK11052, malQ, 4-alpha-glucanotransferase; Provisional	NA|726aa|down_5|CP016990.1_718110_720288_+	PRK05402, PRK05402, 1,4-alpha-glucan branching protein GlgB	NA|714aa|down_6|CP016990.1_720287_722429_+	TIGR02100, Glycogen_operon_protein_GlgX_homolog, glycogen debranching enzyme GlgX	NA|129aa|down_7|CP016990.1_722485_722872_+	pfam01641, SelR, SelR domain	NA|384aa|down_8|CP016990.1_722952_724104_-	TIGR00937, Chromate_transport_protein, chromate transporter, chromate ion transporter (CHR) family	NA|148aa|down_9|CP016990.1_724402_724846_-	cd04678, Nudix_Hydrolase_19, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X
GCA_003491245.1_ASM349124v1	CP016990	Aeromonas hydrophila strain ZYAH75 chromosome, complete genome	4	730895-730999	4	CRISPRCasFinder	no		WYL,cas3,DEDDh,csa3,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f	Orphan	GGTGACATGAGTCGTTTTCAGGCCATTGC	29	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,csa3,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f	NA|76aa|up_4|CP016990.1_727110_727338_+,NA|689aa|down_7|CP016990.1_739925_741992_-,NA|155aa|down_8|CP016990.1_742085_742550_-	NA|384aa|up_9|CP016990.1_722952_724104_-	TIGR00937, Chromate_transport_protein, chromate transporter, chromate ion transporter (CHR) family	NA|148aa|up_8|CP016990.1_724402_724846_-	cd04678, Nudix_Hydrolase_19, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|335aa|up_7|CP016990.1_724975_725980_-	cd05288, PGDH, Prostaglandin dehydrogenases	NA|149aa|up_6|CP016990.1_726062_726509_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|142aa|up_5|CP016990.1_726651_727077_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|76aa|up_4|CP016990.1_727110_727338_+	NA	NA|106aa|up_3|CP016990.1_727483_727801_+	COG3111, COG3111, Periplasmic protein with OB-fold [Function unknown]	NA|159aa|up_2|CP016990.1_727890_728367_-	COG1522, Lrp, Transcriptional regulators [Transcription]	NA|207aa|up_1|CP016990.1_728675_729296_-	COG2345, COG2345, Predicted transcriptional regulator [Transcription]	NA|414aa|up_0|CP016990.1_729462_730704_+	cd17330, MFS_SLC46_TetA_like, Eukaryotic Solute carrier 46 (SLC46) family, Bacterial Tetracycline resistance proteins, and similar proteins of the Major Facilitator Superfamily of transporters	NA|188aa|down_0|CP016990.1_731848_732412_-	pfam10973, DUF2799, Protein of unknown function (DUF2799)	NA|280aa|down_1|CP016990.1_732620_733460_+	COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only]	NA|438aa|down_2|CP016990.1_733674_734988_+	cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfamily, Fusobacterium nucleatum Tyt1-like; solute-binding domain	NA|239aa|down_3|CP016990.1_734988_735705_-	cd13704, PBP2_HisK, The periplasmic sensor domain of histidine kinase receptors; the type 2 periplasmic binding fold protein	NA|438aa|down_4|CP016990.1_736159_737473_+	cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfamily, Fusobacterium nucleatum Tyt1-like; solute-binding domain	NA|542aa|down_5|CP016990.1_737494_739120_-	cd17624, REC_OmpR_PmrA-like, phosphoacceptor receiver (REC) domain of PmrA-like OmpR family response regulators	NA|242aa|down_6|CP016990.1_739230_739956_-	pfam11340, DUF3142, Protein of unknown function (DUF3142)	NA|689aa|down_7|CP016990.1_739925_741992_-	NA	NA|155aa|down_8|CP016990.1_742085_742550_-	NA	NA|459aa|down_9|CP016990.1_742592_743969_-	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
GCA_003491245.1_ASM349124v1	CP016990	Aeromonas hydrophila strain ZYAH75 chromosome, complete genome	5	1092087-1092190	5	CRISPRCasFinder	no		WYL,cas3,DEDDh,csa3,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f	Orphan	TACTTGCCTGTAATGCTCAGCCCGCCGAA	29	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,csa3,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f	NA,NA|137aa|down_9|CP016990.1_1103714_1104125_+	NA|263aa|up_9|CP016990.1_1079141_1079930_+	PRK14993, PRK14993, tetrathionate reductase subunit TtrB	NA|372aa|up_8|CP016990.1_1079919_1081035_+	PRK14992, PRK14992, tetrathionate reductase subunit TtrC	NA|1036aa|up_7|CP016990.1_1081034_1084142_+	PRK14991, PRK14991, tetrathionate reductase subunit TtrA	NA|454aa|up_6|CP016990.1_1084198_1085560_-	pfam03372, Exo_endo_phos, Endonuclease/Exonuclease/phosphatase family	NA|279aa|up_5|CP016990.1_1085701_1086538_+	cd07208, Pat_hypo_Ecoli_yjju_like, Hypothetical patatin similar to yjju protein of Escherichia coli	NA|325aa|up_4|CP016990.1_1087093_1088068_+	pfam05141, DIT1_PvcA, Pyoverdine/dityrosine biosynthesis protein	NA|292aa|up_3|CP016990.1_1088078_1088954_+	COG2175, TauD, Probable taurine catabolism dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|428aa|up_2|CP016990.1_1088953_1090237_+	COG1819, COG1819, Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]	NA|309aa|up_1|CP016990.1_1090515_1091442_+	PRK10190, PRK10190, L,D-transpeptidase; Provisional	NA|131aa|up_0|CP016990.1_1091517_1091910_-	cd07247, SgaA_N_like, N-terminal domain of Streptomyces griseus SgaA and similar domains	NA|467aa|down_0|CP016990.1_1093500_1094901_-	COG0312, TldD, Predicted Zn-dependent proteases and their inactivated homologs [General function prediction only]	NA|173aa|down_1|CP016990.1_1095203_1095722_-	PRK12359, PRK12359, flavodoxin FldB; Provisional	NA|300aa|down_2|CP016990.1_1095909_1096809_+	PRK00283, xerD, tyrosine recombinase	NA|513aa|down_3|CP016990.1_1096805_1098344_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|136aa|down_4|CP016990.1_1098540_1098948_-	PRK00567, mscL, large-conductance mechanosensitive channel protein MscL	NA|239aa|down_5|CP016990.1_1099208_1099925_+	PRK10877, PRK10877, protein disulfide isomerase II DsbC; Provisional	NA|577aa|down_6|CP016990.1_1099890_1101621_+	PRK11070, PRK11070, single-stranded-DNA-specific exonuclease RecJ	NA|394aa|down_7|CP016990.1_1101771_1102953_+	cd04789, HTH_Cfa, Helix-Turn-Helix DNA binding domain of the Cfa transcription regulator	NA|168aa|down_8|CP016990.1_1102992_1103496_+	COG3153, COG3153, Predicted acetyltransferase [General function prediction only]	NA|137aa|down_9|CP016990.1_1103714_1104125_+	NA
GCA_003491245.1_ASM349124v1	CP016990	Aeromonas hydrophila strain ZYAH75 chromosome, complete genome	6	1653660-1653751	6	CRISPRCasFinder	no	DinG	WYL,cas3,DEDDh,csa3,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f	Type IV-A	GCTTGGTGTAATCCTGCGCTTTGGCT	26	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,csa3,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f	NA,NA|119aa|down_8|CP016990.1_1663575_1663932_+	NA|299aa|up_9|CP016990.1_1640786_1641683_-	cd09993, HDAC_classIV, Histone deacetylase class IV also known as histone deacetylase 11	NA|220aa|up_8|CP016990.1_1641767_1642427_-	pfam09829, DUF2057, Uncharacterized protein conserved in bacteria (DUF2057)	DinG|691aa|up_7|CP016990.1_1642600_1644673_-	PRK11747, dinG, ATP-dependent DNA helicase DinG; Provisional	NA|351aa|up_6|CP016990.1_1645054_1646107_+	COG3203, OmpC, Outer membrane protein (porin) [Cell envelope biogenesis, outer membrane]	NA|314aa|up_5|CP016990.1_1646337_1647279_+	PRK06298, PRK06298, type III secretion system protein; Validated	NA|397aa|up_4|CP016990.1_1647454_1648645_+	PRK09257, PRK09257, aromatic amino acid transaminase	NA|503aa|up_3|CP016990.1_1648722_1650231_-	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|165aa|up_2|CP016990.1_1650353_1650848_-	pfam09835, DUF2062, Uncharacterized protein conserved in bacteria (DUF2062)	NA|173aa|up_1|CP016990.1_1650841_1651360_-	pfam09835, DUF2062, Uncharacterized protein conserved in bacteria (DUF2062)	NA|740aa|up_0|CP016990.1_1651369_1653589_+	PRK11539, PRK11539, ComEC family competence protein; Provisional	NA|590aa|down_0|CP016990.1_1653787_1655557_+	PRK11176, PRK11176, lipid A ABC transporter ATP-binding protein/permease MsbA	NA|334aa|down_1|CP016990.1_1655556_1656558_+	PRK00652, lpxK, tetraacyldisaccharide 4'-kinase; Reviewed	NA|63aa|down_2|CP016990.1_1656679_1656868_+	PRK11827, PRK11827, protein YcaR	NA|254aa|down_3|CP016990.1_1656864_1657626_+	PRK05450, PRK05450, 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional	NA|215aa|down_4|CP016990.1_1657838_1658483_+	PRK09483, PRK09483, response regulator; Provisional	NA|617aa|down_5|CP016990.1_1658671_1660522_+	PRK00558, uvrC, excinuclease ABC subunit UvrC	NA|185aa|down_6|CP016990.1_1660825_1661380_+	PRK10832, PRK10832, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA|402aa|down_7|CP016990.1_1662222_1663428_+	cd00796, INT_Rci_Hp1_C, Shufflon-specific DNA recombinase Rci and Bacteriophage Hp1_like integrase, C-terminal catalytic domain	NA|119aa|down_8|CP016990.1_1663575_1663932_+	NA	NA|101aa|down_9|CP016990.1_1663924_1664227_+	COG3339, COG3339, Uncharacterized conserved protein [Function unknown]
GCA_003491245.1_ASM349124v1	CP016990	Aeromonas hydrophila strain ZYAH75 chromosome, complete genome	7	3531216-3534303	1,7,1	PILER-CR,CRISPRCasFinder,CRT	no	WYL,cas1,cas3f,cas8f,cas5f,cas7f,cas6f	WYL,cas3,DEDDh,csa3,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f	Type I-F	CCTCGCTGCCGCACAGGCAGCTCAGAAA,CCTCGCTGCCGCACAGGCAGCTCAGAAA,CCTCGCTGCCGCACAGGCAGCTCAGAAA	28,28,28	0	0	NA	NA	I-F:I-F:I-F	51,51,51	51	TypeI-F	WYL,cas3,DEDDh,csa3,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f	NA|88aa|up_9|CP016990.1_3520195_3520459_+,NA|181aa|up_8|CP016990.1_3520531_3521074_+,NA|119aa|up_7|CP016990.1_3521075_3521432_+,NA|61aa|down_6|CP016990.1_3539343_3539526_-	NA|88aa|up_9|CP016990.1_3520195_3520459_+	NA	NA|181aa|up_8|CP016990.1_3520531_3521074_+	NA	NA|119aa|up_7|CP016990.1_3521075_3521432_+	NA	WYL|333aa|up_6|CP016990.1_3521624_3522623_+	pfam13280, WYL, WYL domain	cas1|326aa|up_5|CP016990.1_3522662_3523640_+	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	cas3f|1096aa|up_4|CP016990.1_3523636_3526924_+	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas8f|398aa|up_3|CP016990.1_3527311_3528505_+	pfam09611, Cas_Csy1, CRISPR-associated protein (Cas_Csy1)	cas5f|325aa|up_2|CP016990.1_3528501_3529476_+	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas7f|345aa|up_1|CP016990.1_3529490_3530525_+	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas6f|184aa|up_0|CP016990.1_3530534_3531086_+	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4)	NA|255aa|down_0|CP016990.1_3534532_3535297_-	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|90aa|down_1|CP016990.1_3535408_3535678_+	pfam12728, HTH_17, Helix-turn-helix domain	NA|359aa|down_2|CP016990.1_3535678_3536755_+	pfam10134, RPA, Replication initiator protein A	NA|173aa|down_3|CP016990.1_3536813_3537332_+	pfam11000, DUF2840, Protein of unknown function (DUF2840)	NA|279aa|down_4|CP016990.1_3537908_3538745_-	pfam04655, APH_6_hur, Aminoglycoside/hydroxyurea antibiotic resistance kinase	NA|206aa|down_5|CP016990.1_3538744_3539362_-	cd05150, APH, Aminoglycoside 3'-phosphotransferase	NA|61aa|down_6|CP016990.1_3539343_3539526_-	NA	NA|205aa|down_7|CP016990.1_3539613_3540228_-	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|962aa|down_8|CP016990.1_3540353_3543239_+	pfam01526, DDE_Tnp_Tn3, Tn3 transposase DDE domain	NA|405aa|down_9|CP016990.1_3545339_3546554_+	TIGR00710, Bicyclomycin_resistance_protein_homolog, drug resistance transporter, Bcr/CflA subfamily
GCA_003491245.1_ASM349124v1	CP016990	Aeromonas hydrophila strain ZYAH75 chromosome, complete genome	8	3564803-3565370	2,8,2	PILER-CR,CRISPRCasFinder,CRT	no		WYL,cas3,DEDDh,csa3,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f	Orphan	CCTCGCTGCCGCACAGGCAGCTCAGAAA,CCTCGCTGCCGCACAGGCAGCTCAGAAA,CCTCGCTGCCGCACAGGCAGCTCAGAAA	28,28,28	0	0	NA	NA	I-F:I-F:I-F	8,9,9	9	Orphan	WYL,cas3,DEDDh,csa3,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f	NA,NA	NA|107aa|up_9|CP016990.1_3553230_3553551_-	pfam00893, Multi_Drug_Res, Small Multidrug Resistance protein	NA|421aa|up_8|CP016990.1_3553850_3555113_+	pfam13701, DDE_Tnp_1_4, Transposase DDE domain group 1	NA|292aa|up_7|CP016990.1_3555447_3556323_+	PRK15442, PRK15442, beta-lactamase TEM; Provisional	NA|159aa|up_6|CP016990.1_3556369_3556846_-	TIGR04366, hypothetical_protein, cupin fold metalloprotein, WbuC family	NA|287aa|up_5|CP016990.1_3557104_3557965_-	PRK15442, PRK15442, beta-lactamase TEM; Provisional	NA|186aa|up_4|CP016990.1_3558147_3558705_-	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|1002aa|up_3|CP016990.1_3558868_3561874_+	pfam01526, DDE_Tnp_Tn3, Tn3 transposase DDE domain	NA|151aa|up_2|CP016990.1_3562177_3562630_-	pfam12120, Arr-ms, Rifampin ADP-ribosyl transferase	NA|200aa|up_1|CP016990.1_3562726_3563326_-	TIGR04431, aminoglycoside-6'-N-acetyltransferase_type_Ib, aminoglycoside N(6')-acetyltransferase, AacA4 family	NA|338aa|up_0|CP016990.1_3563572_3564586_+	PRK15417, PRK15417, integron integrase	NA|306aa|down_0|CP016990.1_3566217_3567135_+	PRK10190, PRK10190, L,D-transpeptidase; Provisional	NA|333aa|down_1|CP016990.1_3567162_3568161_+	pfam04338, DUF481, Protein of unknown function, DUF481	NA|240aa|down_2|CP016990.1_3568308_3569028_-	cd03450, NodN, NodN (nodulation factor N) contains a single hot dog fold similar to those of the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit	NA|321aa|down_3|CP016990.1_3569318_3570281_+	pfam12762, DDE_Tnp_IS1595, ISXO2-like transposase domain	NA|319aa|down_4|CP016990.1_3570339_3571296_-	PRK11727, PRK11727, 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF	NA|163aa|down_5|CP016990.1_3571444_3571933_-	PRK10838, spr, bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase	NA|241aa|down_6|CP016990.1_3572208_3572931_+	COG2091, Sfp, Phosphopantetheinyl transferase [Coenzyme metabolism]	NA|283aa|down_7|CP016990.1_3572927_3573776_+	COG3118, COG3118, Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]	NA|81aa|down_8|CP016990.1_3573918_3574161_-	PRK15396, PRK15396, major outer membrane lipoprotein	NA|218aa|down_9|CP016990.1_3574384_3575038_-	PRK03353, ribB, 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
GCA_003491245.1_ASM349124v1	CP016990	Aeromonas hydrophila strain ZYAH75 chromosome, complete genome	9	3853673-3853833	9	CRISPRCasFinder	no		WYL,cas3,DEDDh,csa3,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f	Orphan	GACTGCATCATCTGGGATCCCGCTCACGTGGAAACCGAAGATCAGCTGATGGA	53	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,csa3,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f	NA|91aa|up_2|CP016990.1_3850151_3850424_+,NA|112aa|down_6|CP016990.1_3862350_3862686_+,NA|290aa|down_7|CP016990.1_3862799_3863669_+	NA|641aa|up_9|CP016990.1_3840914_3842837_+	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|191aa|up_8|CP016990.1_3842849_3843422_+	cd00732, CheW, CheW, a small regulator protein, unique to the chemotaxis signalling in prokaryotes and archea	NA|723aa|up_7|CP016990.1_3843497_3845666_+	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|268aa|up_6|CP016990.1_3845722_3846526_+	COG1352, CheR, Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]	NA|157aa|up_5|CP016990.1_3846536_3847007_+	PRK13498, PRK13498, chemoreceptor glutamine deamidase CheD; Provisional	NA|354aa|up_4|CP016990.1_3847017_3848079_+	PRK00742, PRK00742, chemotaxis-specific protein-glutamate methyltransferase CheB	NA|411aa|up_3|CP016990.1_3848132_3849365_-	TIGR01976, am_tr_V_VC1184, cysteine desulfurase family protein, VC1184 subfamily	NA|91aa|up_2|CP016990.1_3850151_3850424_+	NA	NA|246aa|up_1|CP016990.1_3851170_3851908_+	pfam00563, EAL, EAL domain	NA|454aa|up_0|CP016990.1_3852141_3853503_+	PRK15452, PRK15452, putative protease; Provisional	NA|358aa|down_0|CP016990.1_3853942_3855016_-	cd06827, PLPDE_III_AR_proteobact, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases	NA|465aa|down_1|CP016990.1_3855325_3856720_-	PRK08840, PRK08840, replicative DNA helicase; Provisional	NA|285aa|down_2|CP016990.1_3857152_3858007_+	COG4395, COG4395, Uncharacterized protein conserved in bacteria [Function unknown]	NA|514aa|down_3|CP016990.1_3858184_3859726_+	cd01948, EAL, EAL domain	NA|613aa|down_4|CP016990.1_3859958_3861797_+	TIGR01530, Probable_5'-nucleotidase, NAD pyrophosphatase/5'-nucleotidase NadN	NA|114aa|down_5|CP016990.1_3861883_3862225_+	pfam11169, DUF2956, Protein of unknown function (DUF2956)	NA|112aa|down_6|CP016990.1_3862350_3862686_+	NA	NA|290aa|down_7|CP016990.1_3862799_3863669_+	NA	NA|469aa|down_8|CP016990.1_3863758_3865165_-	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]	NA|269aa|down_9|CP016990.1_3865316_3866123_-	PRK10902, PRK10902, FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
GCA_003491245.1_ASM349124v1	CP016990	Aeromonas hydrophila strain ZYAH75 chromosome, complete genome	10	4258133-4258239	10	CRISPRCasFinder	no		WYL,cas3,DEDDh,csa3,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f	Orphan	CAGACCGCAGACGACTTCGTGCTGA	25	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,csa3,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f	NA,NA|98aa|down_8|CP016990.1_4266677_4266971_+	NA|217aa|up_9|CP016990.1_4248770_4249421_-	PRK11123, PRK11123, arginine ABC transporter permease ArtQ	NA|246aa|up_8|CP016990.1_4249424_4250162_-	cd13700, PBP2_Arg_STM4351, Substrate binding domain of arginine-specific ABC transporter; type 2 periplasmic-binding protein fold	NA|247aa|up_7|CP016990.1_4250187_4250928_-	PRK11124, artP, arginine transporter ATP-binding subunit; Provisional	NA|157aa|up_6|CP016990.1_4251129_4251600_+	PRK05066, PRK05066, transcriptional regulator ArgR	NA|302aa|up_5|CP016990.1_4251686_4252592_-	TIGR01413, Probable_deferrochelatase/peroxidase_EfeN, Dyp-type peroxidase family	NA|345aa|up_4|CP016990.1_4252695_4253730_-	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|542aa|up_3|CP016990.1_4253799_4255425_-	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]	NA|337aa|up_2|CP016990.1_4255465_4256476_-	cd13542, PBP2_FutA1_ilke, Substrate binding domain of ferric iron-binding protein, a member of the type 2 periplasmic binding fold superfamily	NA|113aa|up_1|CP016990.1_4256680_4257019_-	COG0347, GlnK, Nitrogen regulatory protein PII [Amino acid transport and metabolism]	NA|139aa|up_0|CP016990.1_4257220_4257637_+	PRK09256, PRK09256, aminoacyl-tRNA hydrolase	NA|399aa|down_0|CP016990.1_4258510_4259707_-	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism]	NA|312aa|down_1|CP016990.1_4259889_4260825_-	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain	NA|178aa|down_2|CP016990.1_4260907_4261441_-	cd00340, GSH_Peroxidase, Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate	NA|188aa|down_3|CP016990.1_4261503_4262067_-	pfam07298, NnrU, NnrU protein	NA|378aa|down_4|CP016990.1_4262277_4263411_-	pfam02595, Gly_kinase, Glycerate kinase family	NA|421aa|down_5|CP016990.1_4263420_4264683_-	COG2610, GntT, H+/gluconate symporter and related permeases [Carbohydrate transport and metabolism / Amino acid transport and metabolism]	NA|372aa|down_6|CP016990.1_4264802_4265918_-	COG3835, CdaR, Sugar diacid utilization regulator [Transcription / Signal transduction mechanisms]	NA|125aa|down_7|CP016990.1_4266239_4266614_+	pfam06062, UPF0231, Uncharacterized protein family (UPF0231)	NA|98aa|down_8|CP016990.1_4266677_4266971_+	NA	NA|277aa|down_9|CP016990.1_4267134_4267965_+	pfam02517, Abi, CAAX protease self-immunity
GCA_003491245.1_ASM349124v1	CP016990	Aeromonas hydrophila strain ZYAH75 chromosome, complete genome	11	4346393-4346501	11	CRISPRCasFinder	no		WYL,cas3,DEDDh,csa3,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f	Orphan	GCAGGATCGACCGAAGTCACCTGCCCGCCAGCATCA	36	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,csa3,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f	NA,NA	NA|423aa|up_9|CP016990.1_4337987_4339256_-	PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated	NA|272aa|up_8|CP016990.1_4339436_4340252_+	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon	NA|252aa|up_7|CP016990.1_4340312_4341068_-	pfam01203, T2SSN, Type II secretion system (T2SS), protein N	NA|164aa|up_6|CP016990.1_4341129_4341621_-	pfam04612, T2SSM, Type II secretion system (T2SS), protein M	NA|401aa|up_5|CP016990.1_4341617_4342820_-	TIGR01709, Type_II_secretion_system_protein_L, type II secretion system protein L	NA|342aa|up_4|CP016990.1_4342921_4343947_-	pfam03934, T2SSK, Type II secretion system (T2SS), protein K	NA|218aa|up_3|CP016990.1_4344036_4344690_-	TIGR01711, Type_II_secretion_system_protein_J, type II secretion system protein J	NA|120aa|up_2|CP016990.1_4344734_4345094_-	pfam02501, T2SSI, Type II secretion system (T2SS), protein I	NA|184aa|up_1|CP016990.1_4345090_4345642_-	TIGR01708, Type_II_secretion_system_protein_H, type II secretion system protein H	NA|144aa|up_0|CP016990.1_4345805_4346237_-	TIGR01710, Type_II_secretion_system_protein_G, type II secretion system protein G	NA|502aa|down_0|CP016990.1_4347720_4349226_-	TIGR02533, Type_II_secretion_system_protein_E, type II secretion system protein E	NA|678aa|down_1|CP016990.1_4349225_4351259_-	TIGR02517, Putative_type_II_secretion_system_protein_D, type II secretion system protein D	NA|291aa|down_2|CP016990.1_4351280_4352153_-	TIGR01713, Type_II_secretion_system_protein_C, type II secretion system protein C	NA|133aa|down_3|CP016990.1_4352343_4352742_+	PRK10348, PRK10348, ribosome-associated heat shock protein Hsp15; Provisional	NA|295aa|down_4|CP016990.1_4352850_4353735_+	PRK00114, hslO, Hsp33 family molecular chaperone HslO	NA|542aa|down_5|CP016990.1_4353884_4355510_+	PRK09344, PRK09344, phosphoenolpyruvate carboxykinase	NA|222aa|down_6|CP016990.1_4355685_4356351_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|601aa|down_7|CP016990.1_4356384_4358187_+	cd01085, APP, X-Prolyl Aminopeptidase 2	NA|132aa|down_8|CP016990.1_4358299_4358695_+	pfam11756, YgbA_NO, Nitrous oxide-stimulated promoter	NA|151aa|down_9|CP016990.1_4358815_4359268_+	PRK03624, PRK03624, putative acetyltransferase; Provisional
