The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP012309	Clostridioides difficile strain DSM 28668 chromosome, complete genome	4214812	211665	301741	4214812	protease,coat,transposase	Clostridium_phage(10.34%)	73	NA	NA
AXU70240.1|211665_212628_+|protease	membrane-associated CAAX amino terminal protease	protease	NA	NA	NA	NA
AXU70241.1|212726_213707_-|protease	membrane-associated caaX amino terminal protease	protease	NA	NA	NA	NA
AXU70242.1|214834_215302_+	glyoxalase	NA	NA	NA	NA	NA
AXU70243.1|216407_217070_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.3	1.3e-30
AXU70244.1|217078_219586_+	ABC transporter permease	NA	NA	NA	NA	NA
AXU70245.1|219911_220256_+	hypothetical protein	NA	NA	NA	NA	NA
AXU70246.1|220493_221180_+	two component transcriptional regulator, winged helix family	NA	W8CYM9	Bacillus_phage	30.2	5.0e-25
AXU70247.1|221190_222432_+	sensor protein	NA	W8CYF6	Bacillus_phage	29.1	7.1e-22
AXU70248.1|222502_223186_+	ABC transporter ATPase	NA	G9BWD6	Planktothrix_phage	39.3	4.8e-36
AXU70249.1|223182_225516_+	ABC transporter permease	NA	NA	NA	NA	NA
AXU70250.1|226299_227649_-	amino acid transporter	NA	NA	NA	NA	NA
AXU70251.1|227685_228906_-	amidohydrolase/peptidase	NA	NA	NA	NA	NA
AXU70252.1|229274_231287_-	sigma-54-dependent transcriptional regulator	NA	NA	NA	NA	NA
AXU70253.1|231757_232408_+	cyclic nucleotide-binding protein	NA	NA	NA	NA	NA
AXU70254.1|232547_233924_-	drug/sodium antiporter	NA	NA	NA	NA	NA
AXU70255.1|233939_235853_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	32.4	2.6e-63
AXU70256.1|235988_236621_+	redox-sensing transcriptional repressor Rex	NA	NA	NA	NA	NA
AXU70257.1|236768_237299_+	formylmethanofuran dehydrogenase subunit E	NA	NA	NA	NA	NA
AXU70258.1|237474_237645_-	ferredoxin	NA	NA	NA	NA	NA
AXU70259.1|237929_238997_+	lipoprotein	NA	NA	NA	NA	NA
AXU70260.1|239166_241068_+	oxidoreductase, acetyl-CoA synthase subunit	NA	NA	NA	NA	NA
AXU70261.1|241048_241534_+	oxidoreductase, electron transfer subunit	NA	NA	NA	NA	NA
AXU70262.1|241508_242735_+	oxidoreductase, NAD/FAD binding subunit	NA	NA	NA	NA	NA
AXU70263.1|242873_244061_-	cyclopropane-fatty-acyl-phospholipid synthase	NA	A0A2I2L5L3	Orpheovirus	33.8	5.5e-48
AXU70264.1|244333_245158_+	ATP-binding protein	NA	NA	NA	NA	NA
AXU70265.1|245286_246552_+	NAD-specific glutamate dehydrogenase	NA	NA	NA	NA	NA
AXU70266.1|246764_247355_+|protease	membrane-associated metalloprotease	protease	NA	NA	NA	NA
AXU70267.1|247684_248818_+|protease	membrane-associated metalloprotease	protease	NA	NA	NA	NA
AXU70268.1|249733_250756_+	cell wall hydrolase	NA	A0A0A8WF62	Clostridium_phage	55.8	4.3e-33
AXU70269.1|251051_251972_+	aspartate carbamoyltransferase catalytic chain	NA	M1HWF9	Paramecium_bursaria_Chlorella_virus	42.5	7.1e-59
AXU70270.1|252010_252703_+	dihydroorotate dehydrogenase electron transfer subunit	NA	NA	NA	NA	NA
AXU70271.1|252695_253598_+	dihydroorotate dehydrogenase 1B	NA	NA	NA	NA	NA
AXU70272.1|253682_254267_+	orotate phosphoribosyltransferase	NA	Q58MW1	Prochlorococcus_phage	28.1	2.2e-05
AXU70273.1|254481_255408_+	ketopantoate reductase	NA	NA	NA	NA	NA
AXU70274.1|255459_256350_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXU70275.1|256537_257569_+	membrane protein	NA	NA	NA	NA	NA
AXU70276.1|257862_258738_+	DNA glycosylase	NA	NA	NA	NA	NA
AXU70277.1|258755_260246_+	cardiolipin synthetase	NA	NA	NA	NA	NA
AXU70278.1|260436_260721_+	10 kDa chaperonin	NA	A0A221S4A8	uncultured_virus	42.6	1.4e-13
AXU70279.1|260753_262382_+	60 kDa chaperonin	NA	A0A240F779	uncultured_virus	55.7	7.6e-157
AXU70280.1|262643_263384_+	NCAIR mutase-like protein	NA	A0A288TYA6	Enterococcus_phage	44.8	4.0e-20
AXU70281.1|263467_264202_+	hypothetical protein	NA	NA	NA	NA	NA
AXU70282.1|264231_264651_+	hypothetical protein	NA	NA	NA	NA	NA
AXU70283.1|265032_266568_+	GMP synthase	NA	A0A1V0SH76	Hokovirus	33.7	1.2e-23
AXU70284.1|267106_268537_+	membrane-associated nucleotidase	NA	NA	NA	NA	NA
AXU70285.1|268684_268993_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXU70286.1|269029_269551_+	chromate transporter	NA	NA	NA	NA	NA
AXU70287.1|270225_273654_-	DNA repair protein	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	37.4	1.1e-176
AXU70288.1|273972_276207_+	signaling protein	NA	NA	NA	NA	NA
AXU70289.1|276462_278493_+	transcription antiterminator	NA	NA	NA	NA	NA
AXU70290.1|278489_278942_+	PTS system transporter subunit IIA	NA	NA	NA	NA	NA
AXU70291.1|278943_279999_+	fructose-like permease EIIC subunit 2	NA	NA	NA	NA	NA
AXU70292.1|280065_280374_+	PTS system fructose-like transporter subunit EIIB	NA	NA	NA	NA	NA
AXU70293.1|280477_281743_+	sugar-phosphate kinase	NA	NA	NA	NA	NA
AXU70294.1|281830_282547_+	hydrolase	NA	NA	NA	NA	NA
AXU70295.1|282789_283083_-|coat	spore coat protein	coat	NA	NA	NA	NA
AXU70296.1|283088_283304_-	hypothetical protein	NA	NA	NA	NA	NA
AXU70297.1|283751_284150_+|transposase	transposase	transposase	A0A0A8WIU6	Clostridium_phage	96.2	2.5e-69
AXU70298.1|284146_285310_+|transposase	transposase	transposase	A0A0A8WI33	Clostridium_phage	99.0	1.7e-219
AXU70299.1|285564_286077_-	nitroreductase	NA	A0A1V0E011	Clostridioides_phage	88.2	1.6e-84
AXU70300.1|286526_287003_+	phosphoribosylaminoimidazole carboxylase catalytic subunit	NA	A0A2P0VNU7	Tetraselmis_virus	45.8	6.9e-26
AXU70301.1|287008_287707_+	phosphoribosylaminoimidazole-succinocarboxamide synthase	NA	A0A0E3F9V5	Synechococcus_phage	43.9	1.5e-45
AXU70302.1|287718_289086_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.0	2.6e-49
AXU70303.1|289079_290156_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	R9TMC7	Synechococcus_phage	42.2	2.2e-64
AXU70304.1|290149_290743_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.4	4.3e-25
AXU70305.1|290735_292268_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	E3SNU8	Prochlorococcus_phage	49.7	2.3e-38
AXU70306.1|292278_293529_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
AXU70307.1|293553_297360_+	formylglycinamidine ribonucleotide synthetase	NA	A6N228	Microbacterium_phage	24.5	1.0e-31
AXU70308.1|297565_298438_+	dtdp-4-dehydrorhamnose reductase	NA	H9NCE8	Sphingomonas_phage	30.0	2.3e-14
AXU70309.1|298546_299416_+	glucose-1-phosphate thymidylyltransferase	NA	I7I009	Enterobacteria_phage	61.1	8.1e-97
AXU70310.1|299464_300022_+	dtdp-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	53.6	1.3e-47
AXU70311.1|300059_301043_+	dtdp-glucose 4,6-dehydratase	NA	A0A291LAD7	Escherichia_phage	47.0	1.1e-78
AXU70312.1|301072_301741_+	transglycosylase	NA	A0A0H3V0Q1	Geobacillus_virus	46.9	4.1e-24
>prophage 2
CP012309	Clostridioides difficile strain DSM 28668 chromosome, complete genome	4214812	1448561	1473001	4214812	tail	Clostridium_phage(54.55%)	29	NA	NA
AXU71306.1|1448561_1448762_+	cold shock protein	NA	A0A1W6JNX5	Morganella_phage	66.2	2.7e-16
AXU71307.1|1449182_1449611_+	regulatory protein	NA	NA	NA	NA	NA
AXU71308.1|1449753_1450509_-	peptidyl-prolyl isomerase	NA	NA	NA	NA	NA
AXU71309.1|1450629_1451046_-	hypothetical protein	NA	NA	NA	NA	NA
AXU71310.1|1451209_1451716_-	phage protein	NA	A0A0A8WEK1	Clostridium_phage	67.1	4.0e-56
AXU71311.1|1451797_1452118_-	phage repressor	NA	A0A0A8WE28	Clostridium_phage	54.5	3.7e-23
AXU71312.1|1452286_1452484_+	phage regulatory protein	NA	NA	NA	NA	NA
AXU71313.1|1452587_1453028_+	DNA-binding protein	NA	A0A090EUN5	Clostridium_phage	51.4	6.0e-32
AXU71314.1|1453276_1453720_+	hypothetical protein	NA	A0A1V0DZX9	Clostridioides_phage	36.1	2.2e-18
AXU71315.1|1453724_1454789_+	phage-like element pbsx protein xkdK	NA	A0A1V0DZX4	Clostridioides_phage	52.8	7.6e-97
AXU71316.1|1454802_1455231_+	phage-like element pbsx protein XkdM	NA	A0A1V0DZX1	Clostridioides_phage	51.8	2.8e-34
AXU71317.1|1455344_1455791_+	Phage XkdN-like protein	NA	A0A090EUD0	Clostridium_phage	36.0	6.3e-13
AXU71318.1|1455817_1455985_+	hypothetical protein	NA	NA	NA	NA	NA
AXU71319.1|1455984_1458438_+	phage protein	NA	A0A1V0DZX3	Clostridioides_phage	55.7	6.1e-17
AXU71320.1|1458437_1458860_+	phage-like element pbsx protein xkdP	NA	A0A090DBR9	Clostridium_phage	71.1	1.7e-52
AXU71321.1|1459141_1460671_+	phage cell wall hydrolase	NA	A0A1V0DZX6	Clostridioides_phage	81.1	1.0e-243
AXU71322.1|1460686_1461013_+	hypothetical protein	NA	J9QE86	Clostridium_phage	94.4	1.0e-52
AXU71323.1|1461012_1461441_+	phage protein	NA	A0A0A8WJ32	Clostridium_phage	82.4	4.4e-64
AXU71324.1|1461433_1462486_+	phage protein	NA	A0A0A8WFP3	Clostridium_phage	70.7	4.6e-139
AXU71325.1|1462482_1463181_+	phage protein	NA	A0A090D815	Clostridium_phage	56.9	5.5e-48
AXU71326.1|1463181_1464168_+|tail	phage tail fiber protein	tail	A0A2H4J039	uncultured_Caudovirales_phage	45.8	3.4e-59
AXU71327.1|1464189_1469421_+	RCC1 domain-containing protein, alpha-tubulin suppressor	NA	A0A0A8WEY5	Clostridium_phage	27.0	1.9e-79
AXU71328.1|1469437_1469791_+	hypothetical protein	NA	A0A0A8WJF2	Clostridium_phage	42.1	1.2e-11
AXU71329.1|1470053_1470314_+	hypothetical protein	NA	E2ELK7	Clostridium_phage	90.6	9.9e-35
AXU71330.1|1470534_1470990_-	hypothetical protein	NA	NA	NA	NA	NA
AXU71331.1|1471217_1471637_-	phage regulatory protein	NA	S5MUV6	Brevibacillus_phage	37.2	5.4e-06
AXU71332.1|1471935_1472145_+	phage regulatory protein	NA	Q5YAA3	Bacillus_phage	47.2	5.9e-06
AXU71333.1|1472176_1472386_+	hypothetical protein	NA	NA	NA	NA	NA
AXU71334.1|1472602_1473001_-	phage regulatory protein	NA	A0A1L2JY18	Aeribacillus_phage	29.7	2.7e-07
>prophage 3
CP012309	Clostridioides difficile strain DSM 28668 chromosome, complete genome	4214812	1556279	1566006	4214812		Pandoravirus(37.5%)	11	NA	NA
AXU71403.1|1556279_1556864_+	para-aminobenzoate synthase glutamine amidotransferase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	52.6	1.4e-57
AXU71404.1|1556865_1558215_+	para-aminobenzoate synthase component I	NA	S4VNU7	Pandoravirus	41.2	2.2e-37
AXU71405.1|1558204_1558948_+	aminodeoxychorismate lyase	NA	NA	NA	NA	NA
AXU71406.1|1558981_1559683_+	hypothetical protein	NA	NA	NA	NA	NA
AXU71407.1|1559708_1560281_+	GTP cyclohydrolase I	NA	E7DN69	Pneumococcus_phage	51.6	3.0e-44
AXU71408.1|1560344_1561136_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	28.8	1.1e-23
AXU71409.1|1561146_1561512_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
AXU71410.1|1561504_1562011_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase	NA	S4VNV0	Pandoravirus	35.2	2.7e-12
AXU71411.1|1561991_1562777_+	chorismate biosynthesis-like protein	NA	E3T537	Cafeteria_roenbergensis_virus	27.9	1.7e-13
AXU71412.1|1563031_1564822_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	32.6	1.2e-51
AXU71413.1|1564839_1566006_+	RNA polymerase sigma factor (sigma-43)	NA	M4SMP8	Cyanophage	36.8	9.6e-37
>prophage 4
CP012309	Clostridioides difficile strain DSM 28668 chromosome, complete genome	4214812	1694266	1748519	4214812	head,terminase,tail,portal,capsid,holin	Clostridium_phage(78.95%)	67	NA	NA
AXU71526.1|1694266_1695961_+	acetolactate synthase large subunit	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	29.5	5.5e-49
AXU71527.1|1696318_1697449_-	prophage lambdaba04, site-specific recombinase	NA	A0A0A8WIE1	Clostridium_phage	99.5	5.0e-216
AXU71528.1|1697688_1698195_-	putative Zn peptidase	NA	A0A0A8WEK1	Clostridium_phage	98.8	3.7e-86
AXU71529.1|1698270_1698882_-	XRE family transcriptional regulator	NA	A0A0A8WJ60	Clostridium_phage	45.2	1.2e-30
AXU71530.1|1698937_1699501_-	phage repressor	NA	A0A0A8WE28	Clostridium_phage	57.3	1.1e-27
AXU71531.1|1699653_1699875_+	transcriptional regulator	NA	NA	NA	NA	NA
AXU71532.1|1699877_1700693_+	phage antirepressor protein	NA	A0A0A8WIE3	Clostridium_phage	96.2	1.9e-79
AXU71533.1|1700739_1700949_+	hypothetical protein	NA	NA	NA	NA	NA
AXU71534.1|1700958_1701333_-	hypothetical protein	NA	A0A1L5C299	Pseudoalteromonas_phage	37.1	2.2e-11
AXU71535.1|1701408_1701606_+	phage regulatory protein	NA	A0A0A8WE47	Clostridium_phage	90.8	5.4e-25
AXU71536.1|1701636_1702029_+	Helix-turn-helix domain protein	NA	A0A0A8WHS2	Clostridium_phage	94.6	6.7e-59
AXU71537.1|1702009_1702159_+	hypothetical protein	NA	A0A0A8WIF8	Clostridium_phage	89.4	4.2e-14
AXU71538.1|1702229_1702667_+	hypothetical protein	NA	NA	NA	NA	NA
AXU71539.1|1702678_1703845_+	phage-like protein	NA	S5MUB5	Brevibacillus_phage	55.9	1.5e-117
AXU71540.1|1703859_1704195_+	hypothetical protein	NA	NA	NA	NA	NA
AXU71541.1|1704247_1704820_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
AXU71542.1|1704842_1705415_+	phage-like protein	NA	S5MC21	Brevibacillus_phage	66.7	8.5e-63
AXU71543.1|1705414_1707373_+	dna-directed dna polymerase i	NA	A0A0A7RTL3	Clostridium_phage	68.6	1.2e-262
AXU71544.1|1707384_1709802_+	virulence-associated protein e	NA	A0A0A7RTG3	Clostridium_phage	68.0	0.0e+00
AXU71545.1|1710082_1710409_+	VRR-NUC domain-containing protein	NA	A0A0A7RTE1	Clostridium_phage	51.7	8.4e-15
AXU71546.1|1710357_1711728_+	phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase	NA	A0A1S7FYY5	Listeria_phage	60.5	8.4e-157
AXU71547.1|1711881_1712361_+	sigma-70 region 4 type 2	NA	I2E8Y5	Clostridium_phage	45.9	8.5e-32
AXU71548.1|1712503_1712761_+	hypothetical protein	NA	NA	NA	NA	NA
AXU71549.1|1712906_1713842_+	hypothetical protein	NA	NA	NA	NA	NA
AXU71550.1|1713860_1714445_+	hypothetical protein	NA	NA	NA	NA	NA
AXU71551.1|1714457_1715150_+	phage DNA-binding protein	NA	A0A0A8WFS6	Clostridium_phage	97.8	1.4e-120
AXU71552.1|1715127_1716381_+|terminase	phage terminase large subunit	terminase	X5JAB3	Clostridium_phage	97.1	1.4e-243
AXU71553.1|1716389_1717829_+|portal	phage portal protein	portal	X5J9Z4	Clostridium_phage	91.4	3.8e-261
AXU71554.1|1717818_1719216_+|head	phage minor head protein	head	A0A0A8WIE7	Clostridium_phage	94.8	7.0e-260
AXU71555.1|1719230_1719431_+	hypothetical protein	NA	A0A0A8WJ56	Clostridium_phage	100.0	2.3e-31
AXU71556.1|1719496_1720060_+	phage scaffold protein	NA	A0A0A8WFU8	Clostridium_phage	87.2	2.5e-83
AXU71557.1|1720071_1720971_+|capsid	phage major capsid protein	capsid	A0A0A8WFI8	Clostridium_phage	100.0	2.8e-169
AXU71558.1|1720970_1721204_+	hypothetical protein	NA	A0A0A8WFD0	Clostridium_phage	97.4	1.4e-32
AXU71559.1|1721213_1721615_+	hypothetical protein	NA	X5JAJ0	Clostridium_phage	97.0	8.1e-68
AXU71560.1|1721608_1721956_+	phage protein	NA	X5JAV9	Clostridium_phage	100.0	5.0e-58
AXU71561.1|1721955_1722381_+	phage protein	NA	A0A0A8WFV8	Clostridium_phage	97.2	6.1e-74
AXU71562.1|1722373_1722811_+	phage protein	NA	X5JAB5	Clostridium_phage	95.2	1.5e-75
AXU71563.1|1722794_1722980_+	hypothetical protein	NA	A0A0A8WFD8	Clostridium_phage	91.4	1.2e-21
AXU71564.1|1722981_1724292_+	phage protein	NA	X5JAJ1	Clostridium_phage	92.7	4.4e-232
AXU71565.1|1724308_1724779_+	phage protein	NA	A0A0A8WJ62	Clostridium_phage	82.1	7.0e-71
AXU71566.1|1724850_1725291_+	phage protein	NA	X5JAB6	Clostridium_phage	63.7	8.6e-47
AXU71567.1|1726133_1726238_+	hypothetical protein	NA	A0A090D809	Clostridium_phage	73.5	1.9e-05
AXU71568.1|1726817_1727699_+	hypothetical protein	NA	NA	NA	NA	NA
AXU71569.1|1727722_1730113_+|tail	phage tail tape measure protein	tail	X5JAB7	Clostridium_phage	75.6	0.0e+00
AXU71570.1|1730124_1730814_+	phage cell wall hydrolase	NA	X5J9Z8	Clostridium_phage	95.6	4.1e-120
AXU71571.1|1730806_1732771_+	phage cell wall hydrolase	NA	A0A0A8WIF2	Clostridium_phage	87.7	1.4e-311
AXU71572.1|1732784_1733045_+	phage protein	NA	A3QSB4	Clostridium_virus	90.7	5.8e-35
AXU71573.1|1733049_1733469_+	phage protein	NA	X5JB38	Clostridium_phage	99.3	3.5e-74
AXU71574.1|1733469_1734519_+	phage protein	NA	A0A0A8WFK0	Clostridium_phage	95.7	9.2e-188
AXU71575.1|1734511_1735129_+	phage protein	NA	A0A0A8WII4	Clostridium_phage	97.6	4.4e-113
AXU71576.1|1735140_1736166_+|tail	phage tail fiber protein	tail	A3QSB7	Clostridium_virus	97.4	1.6e-160
AXU71577.1|1736180_1737764_+	Glycine rich protein	NA	A0A0A8WI57	Clostridium_phage	67.9	2.4e-176
AXU71578.1|1737776_1738076_+	hypothetical protein	NA	A0A0A8WIX5	Clostridium_phage	92.9	3.5e-44
AXU71579.1|1738075_1738258_+	hypothetical protein	NA	A0A090D845	Clostridium_phage	100.0	1.7e-25
AXU71580.1|1738290_1738482_+	hypothetical protein	NA	A3QSB9	Clostridium_virus	93.7	1.3e-23
AXU71581.1|1738498_1739632_+	Ig domain-containing protein	NA	E2ELJ9	Clostridium_phage	47.5	1.0e-83
AXU71582.1|1739831_1740962_+	Ig domain-containing protein	NA	E2ELJ9	Clostridium_phage	34.3	5.6e-50
AXU71583.1|1740978_1741344_+	hypothetical protein	NA	E2ELK0	Clostridium_phage	96.7	7.1e-55
AXU71584.1|1741346_1741502_+	phage protein, XkdX family	NA	E2ELK1	Clostridium_phage	90.9	3.0e-15
AXU71585.1|1741712_1742393_+|tail	tail fiber protein H	tail	A3QSC0	Clostridium_virus	57.8	3.7e-12
AXU71586.1|1742410_1742701_+	hypothetical protein	NA	A3QSC2	Clostridium_virus	54.6	1.1e-18
AXU71587.1|1742700_1742883_+	hypothetical protein	NA	A3QSC3	Clostridium_virus	98.3	5.0e-25
AXU71588.1|1743170_1743428_+|holin	holin	holin	A3QSC5	Clostridium_virus	100.0	1.1e-41
AXU71589.1|1744630_1745443_+	N-acetylmuramoyl-l-alanine amidase	NA	X5JAJ5	Clostridium_phage	97.4	9.7e-153
AXU71590.1|1745536_1747936_+	penicillin-binding protein	NA	NA	NA	NA	NA
AXU71591.1|1747976_1748153_-	putative PemI	NA	A0A0A8WHQ4	Clostridium_phage	63.8	4.2e-13
AXU71592.1|1748390_1748519_-	hypothetical protein	NA	A0A0A8WEJ5	Clostridium_phage	95.2	5.8e-12
>prophage 5
CP012309	Clostridioides difficile strain DSM 28668 chromosome, complete genome	4214812	1832196	1842433	4214812	protease,transposase	Clostridium_phage(33.33%)	8	NA	NA
AXU71665.1|1832196_1834071_+	asparagine synthetase	NA	A0A2P1ELF7	Moumouvirus	30.1	4.7e-25
AXU71666.1|1834162_1835599_-|protease	serine protease	protease	NA	NA	NA	NA
AXU71667.1|1835855_1836254_+|transposase	transposase	transposase	A0A0A8WIU6	Clostridium_phage	96.2	2.5e-69
AXU71668.1|1836250_1837414_+|transposase	transposase	transposase	A0A0A8WI33	Clostridium_phage	98.7	5.0e-219
AXU71669.1|1837773_1838352_+	tellurium resistance protein	NA	A0A0S4KZ16	Pseudomonas_phage	36.9	2.1e-16
AXU71670.1|1838390_1838969_+	tellurium resistance protein	NA	NA	NA	NA	NA
AXU71671.1|1839054_1839684_+	tellurium resistance protein	NA	K4JRX3	Caulobacter_phage	33.8	1.1e-26
AXU71672.1|1839673_1842433_+	calcium-transporting ATPase	NA	A0A1J0FA34	Only_Syngen_Nebraska_virus	29.6	6.5e-92
>prophage 6
CP012309	Clostridioides difficile strain DSM 28668 chromosome, complete genome	4214812	2599374	2605705	4214812	transposase	Clostridium_phage(71.43%)	11	NA	NA
AXU72356.1|2599374_2599827_-	prophage antirepressor-related protein	NA	X5JAW1	Clostridium_phage	91.9	2.7e-72
AXU72357.1|2599823_2600189_-	phage-related regulatory protein	NA	A0A2R2ZGW3	Clostridioides_phage	69.0	4.9e-40
AXU72358.1|2600309_2600462_-	hypothetical protein	NA	X5JAJ2	Clostridium_phage	59.2	1.6e-05
AXU72359.1|2600669_2600819_-	hypothetical protein	NA	NA	NA	NA	NA
AXU72360.1|2601605_2602520_-	hypothetical protein	NA	NA	NA	NA	NA
AXU72361.1|2602713_2602866_-	hypothetical protein	NA	J9QED5	Clostridium_phage	52.0	9.6e-06
AXU72362.1|2603139_2603472_-	hypothetical protein	NA	NA	NA	NA	NA
AXU72363.1|2603498_2603768_-	hypothetical protein	NA	NA	NA	NA	NA
AXU72364.1|2603901_2604333_-|transposase	transposase-like protein B	transposase	A0A0H3UZC2	Geobacillus_virus	63.7	3.4e-32
AXU72365.1|2605031_2605223_-	repressor	NA	A0A0A8WFF9	Clostridium_phage	68.9	1.9e-14
AXU72366.1|2605327_2605705_-	regulatory protein	NA	A0A0A8WJU1	Clostridium_phage	88.0	1.7e-51
>prophage 7
CP012309	Clostridioides difficile strain DSM 28668 chromosome, complete genome	4214812	3158236	3167189	4214812		Catovirus(50.0%)	8	NA	NA
AXU72836.1|3158236_3160150_-	capsular polysaccharide biosynthesis protein	NA	A0A1V0SAI8	Catovirus	29.8	1.1e-26
AXU72837.1|3160233_3161325_-	capsular polysaccharide biosynthesis glycosyl transferase	NA	A0A1V0SL50	Klosneuvirus	26.2	1.0e-16
AXU72838.1|3161330_3162626_-	UDP-glucose 6-dehydrogenase	NA	A0A127AXI2	Bacillus_phage	43.6	2.9e-90
AXU72839.1|3162651_3163404_-	teichuronic acid biosynthesis glycosyl transferase	NA	A0A1V0SAH6	Catovirus	40.5	4.6e-16
AXU72840.1|3163451_3164360_-	beta-glycosyltransferase	NA	NA	NA	NA	NA
AXU72841.1|3164381_3165131_-	teichuronic acid biosynthesis glycosyl transferase	NA	A0A1V0SAH6	Catovirus	38.8	1.2e-16
AXU72842.1|3165159_3166335_-	minor teichoic acid biosynthesis protein	NA	NA	NA	NA	NA
AXU72843.1|3166349_3167189_-	glycosyl transferase	NA	A0A2P1ELT8	Moumouvirus	26.3	7.0e-05
>prophage 8
CP012309	Clostridioides difficile strain DSM 28668 chromosome, complete genome	4214812	3646830	3655173	4214812	lysis,holin	Clostridium_phage(57.14%)	12	NA	NA
AXU73229.1|3646830_3648858_-	N-6 DNA methylase	NA	A0A220A2U5	Liberibacter_phage	24.0	2.6e-21
AXU73230.1|3649153_3649399_-	hypothetical protein	NA	NA	NA	NA	NA
AXU73231.1|3649468_3650080_-	hypothetical protein	NA	NA	NA	NA	NA
AXU73232.1|3650303_3650762_+	hypothetical protein	NA	NA	NA	NA	NA
AXU73233.1|3650788_3651547_-	putative N-acetylmuramoyl-L-alanine amidase	NA	A0A0A8WI59	Clostridium_phage	86.9	7.4e-131
AXU73234.1|3651684_3651840_-|holin,lysis	toxin secretion/phage lysis holin	holin,lysis	D9ZNF2	Clostridium_phage	54.0	1.4e-07
AXU73235.1|3651808_3651934_-	hypothetical protein	NA	NA	NA	NA	NA
AXU73236.1|3652000_3652219_-	hypothetical protein	NA	NA	NA	NA	NA
AXU73237.1|3652318_3652501_-	hypothetical protein	NA	A3QSC3	Clostridium_virus	91.5	2.1e-23
AXU73238.1|3652500_3652794_-	hypothetical protein	NA	J9QE35	Clostridium_phage	85.6	5.5e-42
AXU73239.1|3652810_3654289_-	hypothetical protein	NA	A0A0A8WHY5	Clostridium_phage	81.6	1.7e-139
AXU73240.1|3654645_3655173_-	hypothetical protein	NA	A0A1S5SAB0	Streptococcus_phage	60.1	7.4e-53
>prophage 9
CP012309	Clostridioides difficile strain DSM 28668 chromosome, complete genome	4214812	3817385	3877222	4214812	protease	Agrobacterium_phage(15.38%)	57	NA	NA
AXU73377.1|3817385_3818465_-|protease	protease	protease	A0A1B1IT49	uncultured_Mediterranean_phage	25.7	3.3e-15
AXU73378.1|3818620_3819970_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
AXU73379.1|3820234_3821863_-	sodium-dependent phosphate transporter	NA	NA	NA	NA	NA
AXU73380.1|3821964_3823572_-	FAD-dependent dehydrogenase	NA	NA	NA	NA	NA
AXU73381.1|3823619_3823937_-	hypothetical protein	NA	NA	NA	NA	NA
AXU73382.1|3823941_3824307_-	hypothetical protein	NA	NA	NA	NA	NA
AXU73383.1|3824387_3825425_-	protein translocase	NA	NA	NA	NA	NA
AXU73384.1|3825677_3826262_-	hypothetical protein	NA	NA	NA	NA	NA
AXU73385.1|3826276_3826720_-	hypothetical protein	NA	NA	NA	NA	NA
AXU73386.1|3826720_3827593_-	fimbrial assembly protein	NA	NA	NA	NA	NA
AXU73387.1|3827645_3828005_-	type IV pilin	NA	NA	NA	NA	NA
AXU73388.1|3828058_3829144_-	type IV pilus-assembly protein	NA	NA	NA	NA	NA
AXU73389.1|3829314_3830664_-	type IV pilus-assembly protein	NA	NA	NA	NA	NA
AXU73390.1|3830686_3831367_-	membrane protein	NA	NA	NA	NA	NA
AXU73391.1|3831757_3832837_-	ATP/GTP-binding protein	NA	NA	NA	NA	NA
AXU73392.1|3833414_3834785_+	transporter	NA	NA	NA	NA	NA
AXU73393.1|3835049_3835661_-	ribosome biogenesis GTP-binding protein YsxC	NA	NA	NA	NA	NA
AXU73394.1|3835650_3838014_-|protease	ATP-dependent protease La	protease	A0A0R6PGP8	Moraxella_phage	44.5	1.1e-175
AXU73395.1|3838193_3838706_+	chromate transport protein	NA	NA	NA	NA	NA
AXU73396.1|3838693_3839221_+	chromate transport protein	NA	NA	NA	NA	NA
AXU73397.1|3839291_3840542_-|protease	ATP-dependent protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	63.1	6.1e-146
AXU73398.1|3840560_3841145_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	58.8	9.3e-57
AXU73399.1|3841294_3842581_-	trigger factor	NA	NA	NA	NA	NA
AXU73400.1|3842774_3843245_-	phosphoesterase	NA	NA	NA	NA	NA
AXU73401.1|3843244_3844594_-	ribonuclease PH	NA	NA	NA	NA	NA
AXU73402.1|3844753_3846778_-	DNA ligase	NA	A0A0K2QQN8	Ralstonia_phage	37.6	3.8e-113
AXU73403.1|3846963_3847902_-	D-isomer specific 2-hydroxyacid dehydrogenase	NA	NA	NA	NA	NA
AXU73404.1|3848003_3848426_-	hypothetical protein	NA	NA	NA	NA	NA
AXU73405.1|3848613_3849897_+	transporter	NA	NA	NA	NA	NA
AXU73406.1|3849974_3850490_-	electron transport protein	NA	NA	NA	NA	NA
AXU73407.1|3850489_3851866_-	hydrogenase	NA	NA	NA	NA	NA
AXU73408.1|3851890_3852442_-	electron transport protein	NA	NA	NA	NA	NA
AXU73409.1|3852499_3852715_-	hypothetical protein	NA	NA	NA	NA	NA
AXU73410.1|3852683_3853517_-	formate dehydrogenase accessory protein	NA	NA	NA	NA	NA
AXU73411.1|3855960_3857019_-	ABC transporter permease	NA	NA	NA	NA	NA
AXU73412.1|3857229_3857889_-	two-component response regulator	NA	W8CYM9	Bacillus_phage	33.6	4.2e-29
AXU73413.1|3858199_3858829_+	hypothetical protein	NA	NA	NA	NA	NA
AXU73414.1|3858855_3859224_+	hypothetical protein	NA	NA	NA	NA	NA
AXU73415.1|3859308_3860097_-	ABC-2 family transporter protein	NA	NA	NA	NA	NA
AXU73416.1|3860097_3860970_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	34.8	3.0e-27
AXU73417.1|3860984_3862694_-	hypothetical protein	NA	NA	NA	NA	NA
AXU73418.1|3862840_3863422_-	accessory gene regulator protein	NA	X5JB40	Clostridium_phage	30.4	2.9e-18
AXU73419.1|3863480_3863621_-	autoinducer prepeptide	NA	NA	NA	NA	NA
AXU73420.1|3863632_3864949_-	sensor histidine kinase VirS	NA	X5JAC0	Clostridium_phage	33.2	3.4e-54
AXU73421.1|3864942_3865653_-	LytR family DNA-binding response regulator	NA	A0A2R2ZGH8	Clostridioides_phage	36.2	2.2e-28
AXU73422.1|3866091_3866667_-	hypothetical protein	NA	NA	NA	NA	NA
AXU73423.1|3866959_3867238_-	Mor transcription activator domain-containing protein	NA	NA	NA	NA	NA
AXU73424.1|3867546_3868308_-	iron-sulfur cluster-binding protein	NA	NA	NA	NA	NA
AXU73425.1|3868476_3870537_-	exosporium glycoprotein	NA	A0A285PXU9	Cedratvirus	64.7	1.4e-38
AXU73426.1|3870615_3871692_-	glycosyl transferase	NA	A0A1V0SAJ8	Catovirus	25.3	1.7e-16
AXU73427.1|3872003_3872588_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	51.3	3.6e-48
AXU73428.1|3872584_3873067_-	AraC family transcription regulator	NA	NA	NA	NA	NA
AXU73429.1|3873265_3874681_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AXU73430.1|3874795_3875464_+	B3/4 domain protein	NA	NA	NA	NA	NA
AXU73431.1|3875639_3876158_-	nitroreductase	NA	NA	NA	NA	NA
AXU73432.1|3876309_3876633_+	transcriptional regulator	NA	NA	NA	NA	NA
AXU73433.1|3876637_3877222_-|protease	protease	protease	NA	NA	NA	NA
