assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003482365.1_ASM348236v1	CP019864	Clostridioides difficile strain DSM 29747 chromosome, complete genome	1	32126-32211	1	CRISPRCasFinder	no		cas14j,csa3,c2c9_V-U4,WYL,cas3,DEDDh,DinG,RT,cas14k,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas6,cas7,cas8b2	Orphan	GTTGGCGCTGTGCATTAGCACTTT	24	1	10	32150-32187|32150-32187|32150-32187|32150-32187|32150-32187|32150-32187|32150-32187|32150-32187|32150-32187|32150-32187	CP019864.1_12378-12415|CP019864.1_1048518-1048555|CP019864.1_3044607-3044570|CP019864.1_3797668-3797631|CP019864.1_3928149-3928112|CP019864.1_17918-17955|CP019864.1_134621-134658|CP019864.1_141505-141542|CP019864.1_152066-152103|CP019864.1_157480-157517	NA	1	1	Orphan	cas14j,csa3,c2c9_V-U4,WYL,cas3,DEDDh,DinG,RT,cas14k,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas6,cas7,cas8b2	NA|74aa|up_1|CP019864.1_28541_28763_+,NA|138aa|down_0|CP019864.1_39436_39850_+,NA|34aa|down_1|CP019864.1_39857_39959_+	NA|258aa|up_9|CP019864.1_9853_10627_+	TIGR02980, SigBFG, RNA polymerase sigma-70 factor, sigma-B/F/G subfamily	NA|170aa|up_8|CP019864.1_21361_21871_+	COG1827, COG1827, Predicted small molecule binding protein (contains 3H domain) [General function prediction only]	NA|294aa|up_7|CP019864.1_21882_22764_+	PRK10334, PRK10334, small-conductance mechanosensitive channel MscS	NA|424aa|up_6|CP019864.1_23222_24494_+	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|152aa|up_5|CP019864.1_24815_25271_+	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|546aa|up_4|CP019864.1_25741_27379_+	PRK05563, PRK05563, DNA polymerase III subunits gamma and tau; Validated	NA|117aa|up_3|CP019864.1_27437_27788_+	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein	NA|200aa|up_2|CP019864.1_27800_28400_+	PRK00076, recR, recombination protein RecR; Reviewed	NA|74aa|up_1|CP019864.1_28541_28763_+	NA	NA|402aa|up_0|CP019864.1_28833_30039_-	cd17507, GT28_Beta-DGS-like, beta-diglucosyldiacylglycerol synthase and similar proteins	NA|138aa|down_0|CP019864.1_39436_39850_+	NA	NA|34aa|down_1|CP019864.1_39857_39959_+	NA	NA|1144aa|down_2|CP019864.1_40162_43594_+	PRK12999, PRK12999, pyruvate carboxylase; Reviewed	NA|643aa|down_3|CP019864.1_43835_45764_+	PRK12740, PRK12740, elongation factor G-like protein EF-G2	NA|158aa|down_4|CP019864.1_46211_46685_+	COG4463, CtsR, Transcriptional repressor of class III stress genes [Transcription]	NA|165aa|down_5|CP019864.1_46691_47186_+	COG3880, COG3880, Modulator of heat shock repressor CtsR, McsA [Signal transduction    mechanisms]	NA|342aa|down_6|CP019864.1_47201_48227_+	PRK01059, PRK01059, ATP:guanido phosphotransferase; Provisional	NA|816aa|down_7|CP019864.1_48213_50661_+	COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]	NA|458aa|down_8|CP019864.1_50840_52214_+	PRK11823, PRK11823, DNA repair protein RadA; Provisional	NA|357aa|down_9|CP019864.1_52216_53287_+	PRK13482, PRK13482, DNA integrity scanning protein DisA; Provisional
GCA_003482365.1_ASM348236v1	CP019864	Clostridioides difficile strain DSM 29747 chromosome, complete genome	2	150039-150117	2	CRISPRCasFinder	no		cas14j,csa3,c2c9_V-U4,WYL,cas3,DEDDh,DinG,RT,cas14k,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas6,cas7,cas8b2	Orphan	TGTTTATAATGTGGATAATATTTAA	25	0	0	NA	NA	NA	1	1	Orphan	cas14j,csa3,c2c9_V-U4,WYL,cas3,DEDDh,DinG,RT,cas14k,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas6,cas7,cas8b2	NA,NA|226aa|down_4|CP019864.1_166780_167458_+	NA|278aa|up_9|CP019864.1_127173_128007_+	TIGR04520, ECF_ATPase_1, energy-coupling factor transporter ATPase	NA|289aa|up_8|CP019864.1_127994_128861_+	PRK13637, cbiO, energy-coupling factor transporter ATPase	NA|268aa|up_7|CP019864.1_128854_129658_+	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|244aa|up_6|CP019864.1_129690_130422_+	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|144aa|up_5|CP019864.1_130541_130973_+	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|131aa|up_4|CP019864.1_131001_131394_+	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|251aa|up_3|CP019864.1_131854_132607_+	TIGR02883, spore_cwlD, N-acetylmuramoyl-L-alanine amidase CwlD	NA|395aa|up_2|CP019864.1_145089_146274_-	PRK05764, PRK05764, aspartate aminotransferase; Provisional	NA|784aa|up_1|CP019864.1_146646_148998_+	PRK07111, PRK07111, anaerobic ribonucleoside triphosphate reductase; Provisional	NA|180aa|up_0|CP019864.1_149019_149559_+	TIGR02491, Anaerobic_ribonucleoside-triphosphate_reductase, anaerobic ribonucleoside-triphosphate reductase activating protein	NA|280aa|down_0|CP019864.1_162466_163306_+	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|394aa|down_1|CP019864.1_163302_164484_+	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|301aa|down_2|CP019864.1_164787_165690_+	PRK05805, PRK05805, phosphate butyryltransferase; Validated	NA|360aa|down_3|CP019864.1_165711_166791_+	PRK03011, PRK03011, butyrate kinase; Provisional	NA|226aa|down_4|CP019864.1_166780_167458_+	NA	NA|72aa|down_5|CP019864.1_167500_167716_+	COG2221, DsrA, Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]	NA|360aa|down_6|CP019864.1_167744_168824_+	PRK07119, PRK07119, 2-ketoisovalerate ferredoxin reductase; Validated	NA|251aa|down_7|CP019864.1_168823_169576_+	cd03375, TPP_OGFOR, Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor	NA|186aa|down_8|CP019864.1_169576_170134_+	pfam01558, POR, Pyruvate ferredoxin/flavodoxin oxidoreductase	NA|449aa|down_9|CP019864.1_170305_171652_+	PRK14316, glmM, phosphoglucosamine mutase; Provisional
GCA_003482365.1_ASM348236v1	CP019864	Clostridioides difficile strain DSM 29747 chromosome, complete genome	3	597016-597123	3	CRISPRCasFinder	no	cas14j	cas14j,csa3,c2c9_V-U4,WYL,cas3,DEDDh,DinG,RT,cas14k,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas6,cas7,cas8b2	Unclear	TATTAATTGTATTTACTTATTTGATTG	27	0	0	NA	NA	NA	1	1	TypeV	cas14j,csa3,c2c9_V-U4,WYL,cas3,DEDDh,DinG,RT,cas14k,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas6,cas7,cas8b2	NA|106aa|up_5|CP019864.1_591494_591812_+,NA|254aa|up_2|CP019864.1_594622_595384_+,NA|78aa|down_6|CP019864.1_606089_606323_-	NA|286aa|up_9|CP019864.1_587651_588509_+	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|157aa|up_8|CP019864.1_588702_589173_+	cd18094, SpoU-like_TrmL, SAM-dependent tRNA methylase related to TrmL	NA|283aa|up_7|CP019864.1_589207_590056_+	TIGR00762, DegV, EDD domain protein, DegV family	NA|335aa|up_6|CP019864.1_590343_591348_+	cd06354, PBP1_PrnA-like, periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea	NA|106aa|up_5|CP019864.1_591494_591812_+	NA	cas14j|370aa|up_4|CP019864.1_592464_593574_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|232aa|up_3|CP019864.1_593772_594468_+	cd06354, PBP1_PrnA-like, periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea	NA|254aa|up_2|CP019864.1_594622_595384_+	NA	NA|273aa|up_1|CP019864.1_595386_596205_+	pfam08812, YtxC, YtxC-like family	NA|201aa|up_0|CP019864.1_596383_596986_+	COG4399, COG4399, Uncharacterized protein conserved in bacteria [Function unknown]	NA|640aa|down_0|CP019864.1_597778_599698_+	PRK00413, thrS, threonyl-tRNA synthetase; Reviewed	NA|364aa|down_1|CP019864.1_600422_601514_+	pfam12784, PDDEXK_2, PD-(D/E)XK nuclease family transposase	NA|66aa|down_2|CP019864.1_601861_602059_-	pfam03551, PadR, Transcriptional regulator PadR-like family	NA|447aa|down_3|CP019864.1_602418_603759_+	cd16935, HATPase_AgrC-ComD-like, Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Staphylococcus aureus AgrC and Streptococcus pneumoniae ComD which are involved in quorum sensing	NA|190aa|down_4|CP019864.1_604100_604670_-	COG2316, COG2316, Predicted hydrolase (HD superfamily) [General function prediction only]	NA|417aa|down_5|CP019864.1_604830_606081_-	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|78aa|down_6|CP019864.1_606089_606323_-	NA	NA|193aa|down_7|CP019864.1_606373_606952_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|487aa|down_8|CP019864.1_607252_608713_+	cd07082, ALDH_F11_NP-GAPDH, NADP+-dependent non-phosphorylating glyceraldehyde 3-phosphate dehydrogenase and ALDH family 11	NA|202aa|down_9|CP019864.1_609081_609687_+	COG1309, AcrR, Transcriptional regulator [Transcription]
GCA_003482365.1_ASM348236v1	CP019864	Clostridioides difficile strain DSM 29747 chromosome, complete genome	6	1244673-1245299	2,6,1	PILER-CR,CRISPRCasFinder,CRT	no		cas14j,csa3,c2c9_V-U4,WYL,cas3,DEDDh,DinG,RT,cas14k,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas6,cas7,cas8b2	Orphan	GTTTTATATTAACTAAGTGGTATGTAAAG,GTTTTATATTAACTAAGTGGTATGTAAAG,GTTTTATATTAACTAAGTGGTATGTAAAG	29,29,29	1	1	1244903-1244940	CP019864.1_42292-42329	I-A:I-A:I-A	9,9,9	9	Orphan	cas14j,csa3,c2c9_V-U4,WYL,cas3,DEDDh,DinG,RT,cas14k,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas6,cas7,cas8b2	NA|271aa|up_2|CP019864.1_1241792_1242605_+,NA|53aa|up_0|CP019864.1_1244227_1244386_+,NA|84aa|down_0|CP019864.1_1245689_1245941_+,NA|63aa|down_1|CP019864.1_1246105_1246294_-,NA|220aa|down_2|CP019864.1_1246751_1247411_-,NA|65aa|down_5|CP019864.1_1249545_1249740_-,NA|121aa|down_7|CP019864.1_1251215_1251578_+,NA|138aa|down_9|CP019864.1_1252306_1252720_+	NA|442aa|up_9|CP019864.1_1233255_1234581_+	TIGR02644, Thymidine_phosphorylase, pyrimidine-nucleoside phosphorylase	NA|360aa|up_8|CP019864.1_1234793_1235873_+	pfam02618, YceG, YceG-like family	NA|225aa|up_7|CP019864.1_1236044_1236719_+	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]	NA|416aa|up_6|CP019864.1_1236705_1237953_+	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|555aa|up_5|CP019864.1_1238024_1239689_+	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane]	NA|95aa|up_4|CP019864.1_1239786_1240071_-	PRK05803, PRK05803, RNA polymerase sporulation sigma factor SigK	NA|505aa|up_3|CP019864.1_1240096_1241611_-	cd00338, Ser_Recombinase, Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain	NA|271aa|up_2|CP019864.1_1241792_1242605_+	NA	NA|482aa|up_1|CP019864.1_1242644_1244090_+	NF033435, S-layer_Clost, S-layer protein SlpA	NA|53aa|up_0|CP019864.1_1244227_1244386_+	NA	NA|84aa|down_0|CP019864.1_1245689_1245941_+	NA	NA|63aa|down_1|CP019864.1_1246105_1246294_-	NA	NA|220aa|down_2|CP019864.1_1246751_1247411_-	NA	NA|146aa|down_3|CP019864.1_1247466_1247904_-	COG1846, MarR, Transcriptional regulators [Transcription]	NA|170aa|down_4|CP019864.1_1248927_1249437_+	pfam04892, VanZ, VanZ like family	NA|65aa|down_5|CP019864.1_1249545_1249740_-	NA	NA|139aa|down_6|CP019864.1_1250232_1250649_-	PRK05803, PRK05803, RNA polymerase sporulation sigma factor SigK	NA|121aa|down_7|CP019864.1_1251215_1251578_+	NA	NA|240aa|down_8|CP019864.1_1251561_1252281_+	PRK00448, polC, DNA polymerase III PolC; Validated	NA|138aa|down_9|CP019864.1_1252306_1252720_+	NA
GCA_003482365.1_ASM348236v1	CP019864	Clostridioides difficile strain DSM 29747 chromosome, complete genome	7	1580947-1581044	7	CRISPRCasFinder	no		cas14j,csa3,c2c9_V-U4,WYL,cas3,DEDDh,DinG,RT,cas14k,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas6,cas7,cas8b2	Orphan	TTATATTAACATAACTATATTTTACTTGATAAA	33	0	0	NA	NA	NA	1	1	Orphan	cas14j,csa3,c2c9_V-U4,WYL,cas3,DEDDh,DinG,RT,cas14k,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas6,cas7,cas8b2	NA,NA|74aa|down_6|CP019864.1_1587815_1588037_+	NA|294aa|up_9|CP019864.1_1570139_1571021_-	cd10944, CE4_SmPgdA_like, Catalytic NodB homology domain of Streptococcus mutans polysaccharide deacetylase PgdA, Bacillus subtilis YheN, and similar proteins	NA|305aa|up_8|CP019864.1_1571436_1572351_+	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|182aa|up_7|CP019864.1_1572573_1573119_+	cd01046, Rubrerythrin_like, rubrerythrin-like, diiron-binding domain	NA|383aa|up_6|CP019864.1_1573209_1574358_+	COG2006, COG2006, Uncharacterized conserved protein [Function unknown]	NA|422aa|up_5|CP019864.1_1574410_1575676_+	PRK09357, pyrC, dihydroorotase; Validated	NA|411aa|up_4|CP019864.1_1575960_1577193_-	COG0577, SalY, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]	NA|225aa|up_3|CP019864.1_1577195_1577870_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|411aa|up_2|CP019864.1_1577877_1579110_-	COG0845, AcrA, Membrane-fusion protein [Cell envelope biogenesis, outer membrane]	NA|335aa|up_1|CP019864.1_1579220_1580225_-	cd16948, HATPase_BceS-YxdK-YvcQ-like, Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Bacillus subtilis BceS, YxdK, and Bacillus thuringiensis YvcQ	NA|225aa|up_0|CP019864.1_1580248_1580923_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|256aa|down_0|CP019864.1_1581210_1581978_+	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|646aa|down_1|CP019864.1_1581964_1583902_+	pfam02687, FtsX, FtsX-like permease family	NA|105aa|down_2|CP019864.1_1584259_1584574_+	pfam06125, DUF961, Bacterial protein of unknown function (DUF961)	NA|128aa|down_3|CP019864.1_1584592_1584976_+	pfam06125, DUF961, Bacterial protein of unknown function (DUF961)	NA|462aa|down_4|CP019864.1_1585004_1586390_+	COG1674, FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning]	NA|402aa|down_5|CP019864.1_1586567_1587773_+	pfam02486, Rep_trans, Replication initiation factor	NA|74aa|down_6|CP019864.1_1587815_1588037_+	NA	NA|166aa|down_7|CP019864.1_1588153_1588651_+	pfam07275, ArdA, Antirestriction protein (ArdA)	NA|816aa|down_8|CP019864.1_1589115_1591563_+	pfam12846, AAA_10, AAA-like domain	NA|726aa|down_9|CP019864.1_1591565_1593743_+	COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
GCA_003482365.1_ASM348236v1	CP019864	Clostridioides difficile strain DSM 29747 chromosome, complete genome	8	1745745-1746893	3,8,2	PILER-CR,CRISPRCasFinder,CRT	no	cas14j	cas14j,csa3,c2c9_V-U4,WYL,cas3,DEDDh,DinG,RT,cas14k,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas6,cas7,cas8b2	Unclear	GTTTTATATTAACTATGTGGTATGTAAAT,GTTTTATATTAACTATGTGGTATGTAAAT,GTTTTATATTAACTATGTGGTATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	17,17,17	17	TypeV	cas14j,csa3,c2c9_V-U4,WYL,cas3,DEDDh,DinG,RT,cas14k,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas6,cas7,cas8b2	NA,NA|96aa|down_0|CP019864.1_1747463_1747751_+,NA|38aa|down_4|CP019864.1_1752117_1752231_+,NA|33aa|down_5|CP019864.1_1752310_1752409_-,NA|59aa|down_6|CP019864.1_1753269_1753446_-,NA|341aa|down_7|CP019864.1_1754494_1755517_+,NA|257aa|down_9|CP019864.1_1756425_1757196_+	NA|266aa|up_9|CP019864.1_1728621_1729419_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|329aa|up_8|CP019864.1_1729728_1730715_-	TIGR00545, Probable_lipoate-protein_ligase_A, lipoyltransferase and lipoate-protein ligase	NA|577aa|up_7|CP019864.1_1731198_1732929_+	COG1757, NhaC, Na+/H+ antiporter [Energy production and conversion]	NA|825aa|up_6|CP019864.1_1734211_1736686_+	PRK00451, PRK00451, aminomethyl-transferring glycine dehydrogenase subunit GcvPA	NA|486aa|up_5|CP019864.1_1736685_1738143_+	PRK04366, PRK04366, aminomethyl-transferring glycine dehydrogenase subunit GcvPB	NA|786aa|up_4|CP019864.1_1738560_1740918_+	cd02609, P-type_ATPase, uncharacterized subfamily of P-type ATPase transporter, similar to uncharacterized Streptococcus pneumoniae exported protein 7, Exp7	NA|106aa|up_3|CP019864.1_1741002_1741320_-	pfam06865, DUF1255, Protein of unknown function (DUF1255)	NA|146aa|up_2|CP019864.1_1741851_1742289_-	cd01303, GDEase, Guanine deaminase (GDEase)	cas14j|370aa|up_1|CP019864.1_1742422_1743532_-	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|276aa|up_0|CP019864.1_1744271_1745099_-	cd01303, GDEase, Guanine deaminase (GDEase)	NA|96aa|down_0|CP019864.1_1747463_1747751_+	NA	NA|184aa|down_1|CP019864.1_1748285_1748837_-	cd02209, cupin_XRE_C, XRE (Xenobiotic Response Element) family transcriptional regulators, C-terminal cupin domain	NA|321aa|down_2|CP019864.1_1749027_1749990_+	cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase	NA|616aa|down_3|CP019864.1_1750270_1752118_+	cd08579, GDPD_memb_like, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases	NA|38aa|down_4|CP019864.1_1752117_1752231_+	NA	NA|33aa|down_5|CP019864.1_1752310_1752409_-	NA	NA|59aa|down_6|CP019864.1_1753269_1753446_-	NA	NA|341aa|down_7|CP019864.1_1754494_1755517_+	NA	NA|296aa|down_8|CP019864.1_1755529_1756417_+	cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component	NA|257aa|down_9|CP019864.1_1756425_1757196_+	NA
GCA_003482365.1_ASM348236v1	CP019864	Clostridioides difficile strain DSM 29747 chromosome, complete genome	9	2176672-2179602	9,3,4	CRISPRCasFinder,CRT,PILER-CR	no	csa3	cas14j,csa3,c2c9_V-U4,WYL,cas3,DEDDh,DinG,RT,cas14k,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas6,cas7,cas8b2	Type I-A	CTTTACATACCACATAGTTAATATAAAAC,CTTTACATACCACATAGTTAATATAAAAC,GTTTTATATTAACTATGTGGTATGTAAAG	29,29,29	0	0	NA	NA	I-A:I-A:I-A	44,44,43	44	Orphan	cas14j,csa3,c2c9_V-U4,WYL,cas3,DEDDh,DinG,RT,cas14k,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas6,cas7,cas8b2	NA|124aa|up_9|CP019864.1_2171627_2171999_-,NA|68aa|up_7|CP019864.1_2173135_2173339_+,NA|125aa|up_6|CP019864.1_2173357_2173732_+,NA|65aa|up_5|CP019864.1_2173999_2174194_-,NA|41aa|up_4|CP019864.1_2174484_2174607_-,NA|120aa|up_3|CP019864.1_2174730_2175090_-,NA|86aa|up_2|CP019864.1_2175103_2175361_-,NA|78aa|up_1|CP019864.1_2175347_2175581_-,NA|51aa|down_0|CP019864.1_2179880_2180033_-,NA|55aa|down_2|CP019864.1_2183019_2183184_-,NA|45aa|down_5|CP019864.1_2185845_2185980_-	NA|124aa|up_9|CP019864.1_2171627_2171999_-	NA	NA|191aa|up_8|CP019864.1_2172441_2173014_-	pfam10543, ORF6N, ORF6N domain	NA|68aa|up_7|CP019864.1_2173135_2173339_+	NA	NA|125aa|up_6|CP019864.1_2173357_2173732_+	NA	NA|65aa|up_5|CP019864.1_2173999_2174194_-	NA	NA|41aa|up_4|CP019864.1_2174484_2174607_-	NA	NA|120aa|up_3|CP019864.1_2174730_2175090_-	NA	NA|86aa|up_2|CP019864.1_2175103_2175361_-	NA	NA|78aa|up_1|CP019864.1_2175347_2175581_-	NA	NA|63aa|up_0|CP019864.1_2175768_2175957_+	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|51aa|down_0|CP019864.1_2179880_2180033_-	NA	NA|282aa|down_1|CP019864.1_2181950_2182796_+	pfam13026, DUF3887, Protein of unknown function (DUF3887)	NA|55aa|down_2|CP019864.1_2183019_2183184_-	NA	NA|214aa|down_3|CP019864.1_2184306_2184948_-	COG5658, COG5658, Predicted integral membrane protein [Function unknown]	csa3|99aa|down_4|CP019864.1_2184928_2185225_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|45aa|down_5|CP019864.1_2185845_2185980_-	NA	NA|251aa|down_6|CP019864.1_2186190_2186943_-	PRK10621, PRK10621, hypothetical protein; Provisional	NA|552aa|down_7|CP019864.1_2187003_2188659_-	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|121aa|down_8|CP019864.1_2188670_2189033_-	COG1321, TroR, Mn-dependent transcriptional regulator [Transcription]	NA|123aa|down_9|CP019864.1_2189347_2189716_-	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB
GCA_003482365.1_ASM348236v1	CP019864	Clostridioides difficile strain DSM 29747 chromosome, complete genome	10	2226476-2227364	10,4,5	CRISPRCasFinder,CRT,PILER-CR	no		cas14j,csa3,c2c9_V-U4,WYL,cas3,DEDDh,DinG,RT,cas14k,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas6,cas7,cas8b2	Orphan	ATTTACATACCACTTAGTTAATATAAAAC,ATTTACATACCACTTAGTTAATATAAAAC,GTTTTATATTAACTAAGTGGTATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	13,13,12	13	Orphan	cas14j,csa3,c2c9_V-U4,WYL,cas3,DEDDh,DinG,RT,cas14k,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas6,cas7,cas8b2	NA|40aa|up_7|CP019864.1_2218736_2218856_-,NA|95aa|up_0|CP019864.1_2225475_2225760_-,NA|206aa|down_7|CP019864.1_2235781_2236399_-,NA|567aa|down_8|CP019864.1_2236568_2238269_-,NA|188aa|down_9|CP019864.1_2238573_2239137_-	NA|406aa|up_9|CP019864.1_2216174_2217392_-	cd02152, OAT, Ornithine acetyltransferase (OAT) family; also referred to as ArgJ	NA|345aa|up_8|CP019864.1_2217432_2218467_-	PRK00436, argC, N-acetyl-gamma-glutamyl-phosphate reductase; Validated	NA|40aa|up_7|CP019864.1_2218736_2218856_-	NA	NA|256aa|up_6|CP019864.1_2219144_2219912_-	pfam14268, YoaP, YoaP-like	NA|158aa|up_5|CP019864.1_2220204_2220678_+	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|186aa|up_4|CP019864.1_2221058_2221616_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|233aa|up_3|CP019864.1_2221873_2222572_+	TIGR03502, lipase_Pla1_cef, extracellular lipase, Pla-1/cef family	NA|156aa|up_2|CP019864.1_2223557_2224025_+	pfam11188, DUF2975, Protein of unknown function (DUF2975)	NA|72aa|up_1|CP019864.1_2224035_2224251_+	COG3655, COG3655, Predicted transcriptional regulator [Transcription]	NA|95aa|up_0|CP019864.1_2225475_2225760_-	NA	NA|291aa|down_0|CP019864.1_2227999_2228872_-	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|193aa|down_1|CP019864.1_2229265_2229844_-	pfam06962, rRNA_methylase, Putative rRNA methylase	NA|239aa|down_2|CP019864.1_2229900_2230617_-	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]	NA|362aa|down_3|CP019864.1_2230807_2231893_+	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|219aa|down_4|CP019864.1_2232046_2232703_-	pfam03154, Atrophin-1, Atrophin-1 family	NA|431aa|down_5|CP019864.1_2232917_2234210_-	cd06828, PLPDE_III_DapDC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase	NA|398aa|down_6|CP019864.1_2234227_2235421_-	PRK06635, PRK06635, aspartate kinase; Reviewed	NA|206aa|down_7|CP019864.1_2235781_2236399_-	NA	NA|567aa|down_8|CP019864.1_2236568_2238269_-	NA	NA|188aa|down_9|CP019864.1_2238573_2239137_-	NA
GCA_003482365.1_ASM348236v1	CP019864	Clostridioides difficile strain DSM 29747 chromosome, complete genome	11	2337466-2340064	11,5,6	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas4,cas3,cas5,cas7b,cas8b1,cas6	cas14j,csa3,c2c9_V-U4,WYL,cas3,DEDDh,DinG,RT,cas14k,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas6,cas7,cas8b2	Type I-B	ATTTAAATACATCTCATGTTACTGTTTAAC,ATTTAAATACATCTCATGTTACTGTTTAAC,ATTTAAATACATCTCATGTTACTGTTTAAC	30,30,30	0	0	NA	NA	III-B:III-B:III-B	39,39,38	39	TypeI-B	cas14j,csa3,c2c9_V-U4,WYL,cas3,DEDDh,DinG,RT,cas14k,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas6,cas7,cas8b2	NA|75aa|up_9|CP019864.1_2327695_2327920_-,NA|275aa|up_7|CP019864.1_2329714_2330539_-,NA|69aa|down_5|CP019864.1_2347549_2347756_+,NA|194aa|down_6|CP019864.1_2348191_2348773_+	NA|75aa|up_9|CP019864.1_2327695_2327920_-	NA	NA|375aa|up_8|CP019864.1_2328116_2329241_+	pfam12725, DUF3810, Protein of unknown function (DUF3810)	NA|275aa|up_7|CP019864.1_2329714_2330539_-	NA	NA|352aa|up_6|CP019864.1_2330886_2331942_-	pfam04551, GcpE, GcpE protein	NA|335aa|up_5|CP019864.1_2332124_2333129_-	pfam02163, Peptidase_M50, Peptidase family M50	NA|385aa|up_4|CP019864.1_2333141_2334296_-	PRK05447, PRK05447, 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional	NA|68aa|up_3|CP019864.1_2334459_2334663_-	COG3655, COG3655, Predicted transcriptional regulator [Transcription]	cas2|97aa|up_2|CP019864.1_2335352_2335643_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|333aa|up_1|CP019864.1_2335853_2336852_-	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1	cas4|165aa|up_0|CP019864.1_2336886_2337381_-	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas3|853aa|down_0|CP019864.1_2340253_2342812_-	cd09639, Cas3_I, CRISPR/Cas system-associated protein Cas3	cas5|247aa|down_1|CP019864.1_2342835_2343576_-	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI	cas7b|330aa|down_2|CP019864.1_2343577_2344567_-	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas8b1|580aa|down_3|CP019864.1_2344559_2346299_-	TIGR02591, cas_Csh1, CRISPR-associated protein Cas8b/Csh1, subtype I-B/HMARI	cas6|232aa|down_4|CP019864.1_2346310_2347006_-	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	NA|69aa|down_5|CP019864.1_2347549_2347756_+	NA	NA|194aa|down_6|CP019864.1_2348191_2348773_+	NA	NA|607aa|down_7|CP019864.1_2348857_2350678_-	cd01948, EAL, EAL domain	NA|48aa|down_8|CP019864.1_2351063_2351207_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|260aa|down_9|CP019864.1_2351735_2352515_-	pfam01148, CTP_transf_1, Cytidylyltransferase family
GCA_003482365.1_ASM348236v1	CP019864	Clostridioides difficile strain DSM 29747 chromosome, complete genome	15	3290518-3292639	15,6,7	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6,WYL	cas14j,csa3,c2c9_V-U4,WYL,cas3,DEDDh,DinG,RT,cas14k,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas6,cas7,cas8b2	Unclear	CTTTACATACCACTTAGTTAATATAAAAC,CTTTACATACCACTTAGTTAATATAAAAC,TTTTATATTAACTAAGTGGTATGTAAAG	29,29,28	0	0	NA	NA	I-A:I-A:I-A	32,32,32	32	Unclear	cas14j,csa3,c2c9_V-U4,WYL,cas3,DEDDh,DinG,RT,cas14k,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas6,cas7,cas8b2	NA|67aa|up_7|CP019864.1_3283423_3283624_+,NA|257aa|up_1|CP019864.1_3288795_3289566_+,NA	NA|740aa|up_9|CP019864.1_3277770_3279990_-	cd01948, EAL, EAL domain	NA|885aa|up_8|CP019864.1_3280265_3282920_-	PRK13805, PRK13805, bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional	NA|67aa|up_7|CP019864.1_3283423_3283624_+	NA	NA|197aa|up_6|CP019864.1_3283830_3284421_-	PRK08305, spoVFB, dipicolinate synthase subunit B; Reviewed	NA|292aa|up_5|CP019864.1_3284423_3285299_-	PRK08306, PRK08306, dipicolinate synthase subunit DpsA	NA|464aa|up_4|CP019864.1_3285374_3286766_-	cd17633, AFD_YhfT-like, fatty acid-CoA ligase VraA	NA|379aa|up_3|CP019864.1_3286769_3287906_-	cd00751, thiolase, Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine	NA|182aa|up_2|CP019864.1_3287926_3288472_-	pfam02632, BioY, BioY family	NA|257aa|up_1|CP019864.1_3288795_3289566_+	NA	NA|143aa|up_0|CP019864.1_3290028_3290457_-	PRK10562, PRK10562, putative acetyltransferase; Provisional	cas2|89aa|down_0|CP019864.1_3292822_3293089_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|327aa|down_1|CP019864.1_3293091_3294072_-	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP	cas4|190aa|down_2|CP019864.1_3294074_3294644_-	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas3|774aa|down_3|CP019864.1_3294640_3296962_-	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	cas5|234aa|down_4|CP019864.1_3296972_3297674_-	cd09658, Cas5_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|305aa|down_5|CP019864.1_3297675_3298590_-	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas8b2|617aa|down_6|CP019864.1_3298591_3300442_-	pfam09706, Cas_CXXC_CXXC, CRISPR-associated protein (Cas_CXXC_CXXC)	cas6|246aa|down_7|CP019864.1_3300447_3301185_-	cd09652, Cas6-I-III, CRISPR/Cas system-associated RAMP superfamily protein Cas6	WYL|296aa|down_8|CP019864.1_3301262_3302150_-	pfam13280, WYL, WYL domain	NA|639aa|down_9|CP019864.1_3302458_3304375_-	pfam02687, FtsX, FtsX-like permease family
