The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP012312	Clostridioides difficile strain DSM 28670 chromosome, complete genome	4191653	276755	292936	4191653		Synechococcus_phage(23.08%)	14	NA	NA
AXU73963.1|276755_277268_-	nitroreductase	NA	A0A1V0E011	Clostridioides_phage	87.6	7.8e-84
AXU73964.1|277717_278194_+	phosphoribosylaminoimidazole carboxylase catalytic subunit	NA	A0A2P0VNU7	Tetraselmis_virus	45.8	6.9e-26
AXU73965.1|278199_278898_+	phosphoribosylaminoimidazole-succinocarboxamide synthase	NA	A0A0E3F9V5	Synechococcus_phage	43.9	1.5e-45
AXU73966.1|278909_280277_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.0	2.6e-49
AXU73967.1|280270_281347_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	R9TMC7	Synechococcus_phage	42.2	1.7e-64
AXU73968.1|281340_281934_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.4	5.6e-25
AXU73969.1|281926_283459_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	E3SNU8	Prochlorococcus_phage	49.7	2.3e-38
AXU73970.1|283469_284720_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
AXU73971.1|284744_288551_+	formylglycinamidine ribonucleotide synthetase	NA	A6N228	Microbacterium_phage	24.4	1.2e-30
AXU73972.1|288751_289624_+	dtdp-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	38.1	2.9e-38
AXU73973.1|289733_290603_+	glucose-1-phosphate thymidylyltransferase	NA	I7I009	Enterobacteria_phage	62.2	1.2e-97
AXU73974.1|290652_291210_+	dtdp-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	53.4	7.5e-48
AXU73975.1|291245_292229_+	dtdp-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	46.1	5.9e-80
AXU73976.1|292267_292936_+	transglycosylase	NA	A0A0H3V0Q1	Geobacillus_virus	45.0	1.7e-22
>prophage 2
CP012312	Clostridioides difficile strain DSM 28670 chromosome, complete genome	4191653	618303	661836	4191653	coat,tRNA,transposase	Streptococcus_phage(22.22%)	33	NA	NA
AXU74261.1|618303_620223_+|tRNA	threonyl-tRNA synthetase	tRNA	A0A2K9L297	Tupanvirus	39.9	1.3e-144
AXU74262.1|620988_622104_+|transposase	PD-(D/E)XK nuclease family transposase	transposase	NA	NA	NA	NA
AXU74263.1|622325_623363_-	hypothetical protein	NA	NA	NA	NA	NA
AXU74264.1|623355_624042_-	pentapeptide repeat-containing protein	NA	NA	NA	NA	NA
AXU74265.1|624053_624374_-	transcriptional regulator	NA	NA	NA	NA	NA
AXU74266.1|624734_626075_+	two-component sensor histidine kinase	NA	X5JAC0	Clostridium_phage	37.4	1.5e-73
AXU74267.1|626716_627286_-	putative HD superfamily hydrolase	NA	NA	NA	NA	NA
AXU74268.1|627446_628697_-	efflux protein	NA	NA	NA	NA	NA
AXU74269.1|629002_629554_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AXU74270.1|629852_631313_+	NADP-dependent glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
AXU74271.1|631680_632286_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AXU74272.1|632288_634856_+	PEP-utilizing kinase	NA	A0A1V0SGR7	Hokovirus	39.2	2.7e-47
AXU74273.1|635115_637200_-	signaling protein	NA	NA	NA	NA	NA
AXU74274.1|637247_638477_-	signaling protein	NA	NA	NA	NA	NA
AXU74275.1|638478_639657_-	signaling protein	NA	G3MA91	Bacillus_virus	26.9	8.6e-09
AXU74276.1|640252_641692_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AXU74277.1|642004_642184_+	hypothetical protein	NA	NA	NA	NA	NA
AXU74278.1|642802_643078_+	hypothetical protein	NA	NA	NA	NA	NA
AXU74279.1|643097_643385_+	hypothetical protein	NA	NA	NA	NA	NA
AXU74280.1|643901_646397_+	hypothetical protein	NA	NA	NA	NA	NA
AXU74281.1|646411_651595_+	hypothetical protein	NA	NA	NA	NA	NA
AXU74282.1|651799_652666_-	cation transporting ATPase	NA	E4ZFI9	Streptococcus_phage	29.5	1.4e-29
AXU74283.1|652858_653614_-|transposase	transposase-like protein b	transposase	A0A0H3UZC2	Geobacillus_virus	56.6	6.8e-76
AXU74284.1|653592_653967_-|transposase	transposase-like protein B	transposase	S6AND0	Bacillus_phage	51.5	5.3e-21
AXU74285.1|654621_655782_-	cation transporting ATPase	NA	NA	NA	NA	NA
AXU74286.1|655824_656220_-	hypothetical protein	NA	NA	NA	NA	NA
AXU74287.1|657165_657354_+	hypothetical protein	NA	NA	NA	NA	NA
AXU74288.1|657535_657976_-	hypothetical protein	NA	NA	NA	NA	NA
AXU74289.1|658330_659644_+	putative phosphoadenosine phosphosulfate sulfotransferase	NA	A0A068F1U8	Mycobacterium_phage	38.9	9.6e-94
AXU74290.1|659661_660198_+	ParB-like nuclease domain protein	NA	A0A220GKT8	Streptococcus_phage	69.7	1.2e-63
AXU74291.1|660717_660939_+|coat	Spore coat associated protein JA (CotJA)	coat	NA	NA	NA	NA
AXU74292.1|660938_661202_+|coat	spore-coat protein	coat	NA	NA	NA	NA
AXU74293.1|661263_661836_+|coat	spore-coat protein	coat	NA	NA	NA	NA
>prophage 3
CP012312	Clostridioides difficile strain DSM 28670 chromosome, complete genome	4191653	1012859	1072183	4191653	holin,integrase,portal,terminase,plate,tail	Clostridium_phage(76.32%)	92	1017495:1017517	1072369:1072391
AXU74599.1|1012859_1013996_+|holin	glycine betaine/carnitine/choline ABC transporter ATP-binding protein	holin	G3M9Y6	Bacillus_virus	35.5	8.0e-28
AXU74600.1|1013988_1015536_+|holin	glycine betaine/carnitine/choline ABC transporter substrate-binding protein	holin	NA	NA	NA	NA
AXU74601.1|1015869_1016736_+	cation efflux rotein	NA	NA	NA	NA	NA
AXU74602.1|1016876_1017530_+	aldo/keto reductase	NA	NA	NA	NA	NA
1017495:1017517	attL	GGAACTATTCCAAAGTATAATAA	NA	NA	NA	NA
AXU74603.1|1017668_1018787_-|integrase	phage integrase	integrase	X5JB41	Clostridium_phage	98.1	2.2e-203
AXU74604.1|1018963_1019158_+	hypothetical protein	NA	NA	NA	NA	NA
AXU74605.1|1019185_1020229_-	hypothetical protein	NA	A0A1S5SFA1	Streptococcus_phage	31.7	4.9e-24
AXU74606.1|1020759_1020900_+	hypothetical protein	NA	NA	NA	NA	NA
AXU74607.1|1020914_1021280_-	phage repressor	NA	X5JA02	Clostridium_phage	100.0	3.6e-59
AXU74608.1|1021424_1021661_+	putative transcriptional regulator	NA	X5JAJ7	Clostridium_phage	100.0	9.6e-37
AXU74609.1|1021653_1022310_+	phage anti-repressor	NA	Q24LC6	Clostridium_phage	36.2	1.2e-25
AXU74610.1|1022368_1022464_+	hypothetical protein	NA	J9QDX7	Clostridium_phage	96.8	2.2e-08
AXU74611.1|1022553_1022691_+	hypothetical protein	NA	A0A0A8WJP8	Clostridium_phage	100.0	2.9e-17
AXU74612.1|1022676_1022988_-	Ribbon-helix-helix protein, copG family	NA	A0A0A8WF14	Clostridium_phage	97.1	7.2e-48
AXU74613.1|1023108_1023279_+	hypothetical protein	NA	A0A0A8WFG5	Clostridium_phage	100.0	5.1e-24
AXU74614.1|1023281_1024037_+	antirepressor, phage associated	NA	A0A090D834	Clostridium_phage	99.6	1.2e-125
AXU74615.1|1024120_1024501_+	hypothetical protein	NA	A0A0A8WIJ9	Clostridium_phage	99.2	4.9e-67
AXU74616.1|1024701_1024899_+	phage regulatory protein	NA	A0A0A8WJU5	Clostridium_phage	98.5	9.5e-30
AXU74617.1|1024915_1025245_+	phage DNA-binding protein	NA	A0A090D837	Clostridium_phage	89.0	5.4e-46
AXU74618.1|1025372_1025567_+	hypothetical protein	NA	A0A090EUJ0	Clostridium_phage	96.9	7.4e-27
AXU74619.1|1025569_1025887_+	hypothetical protein	NA	A0A090DBX1	Clostridium_phage	94.3	1.1e-43
AXU74620.1|1025969_1026479_+	phage protein	NA	A0A0A8WJQ2	Clostridium_phage	97.0	2.1e-81
AXU74621.1|1026488_1027112_+	phage essential recombination function protein	NA	A0A0A8WF23	Clostridium_phage	94.7	3.5e-102
AXU74622.1|1027127_1027931_+	phage protein	NA	A0A0A8WI94	Clostridium_phage	48.2	2.0e-49
AXU74623.1|1027995_1028217_+	hypothetical protein	NA	NA	NA	NA	NA
AXU74624.1|1028234_1028615_+	hypothetical protein	NA	X5JAK1	Clostridium_phage	61.9	3.8e-35
AXU74625.1|1028583_1028733_+	hypothetical protein	NA	A0A0A8WJQ3	Clostridium_phage	81.6	7.2e-14
AXU74626.1|1028719_1029169_+	YopX protein	NA	A0A0A8WF29	Clostridium_phage	63.1	6.5e-50
AXU74627.1|1029152_1029488_+	hypothetical protein	NA	A0A0A8WFN1	Clostridium_phage	92.8	3.0e-52
AXU74628.1|1029529_1029790_+	hypothetical protein	NA	NA	NA	NA	NA
AXU74629.1|1029900_1030110_+	hypothetical protein	NA	A0A0A8WJB6	Clostridium_phage	94.2	1.5e-28
AXU74630.1|1030121_1031126_+	phage protein	NA	J9QE81	Clostridium_phage	93.7	3.8e-175
AXU74631.1|1031207_1031537_+	hypothetical protein	NA	A0A0A8WI99	Clostridium_phage	99.1	3.1e-57
AXU74632.1|1031653_1031827_+	hypothetical protein	NA	NA	NA	NA	NA
AXU74633.1|1031925_1032198_+	hypothetical protein	NA	J9QDY2	Clostridium_phage	93.3	2.2e-40
AXU74634.1|1032220_1032451_+	gp91	NA	J9QD24	Clostridium_phage	90.8	2.8e-33
AXU74635.1|1032604_1033039_+	phage protein	NA	J9QEC8	Clostridium_phage	59.4	1.1e-38
AXU74636.1|1033028_1033436_+	phage protein	NA	A0A090D860	Clostridium_phage	91.8	1.5e-61
AXU74637.1|1033870_1034371_+	sigma factor	NA	A0A0A8WIG7	Clostridium_phage	53.0	5.6e-42
AXU74638.1|1034786_1034984_+	hypothetical protein	NA	NA	NA	NA	NA
AXU74639.1|1035028_1035397_+	hypothetical protein	NA	M4HQ27	Bacillus_phage	47.1	1.5e-23
AXU74640.1|1035413_1035905_+	DNA methylase N-4/N-6 domain-containing protein	NA	X2CXX2	Lactobacillus_phage	45.8	1.3e-30
AXU74641.1|1035904_1036672_+	hypothetical protein	NA	NA	NA	NA	NA
AXU74642.1|1036668_1037304_+	Inner membrane protein YhhQ	NA	A0A1W7AG82	Streptococcus_virus	30.8	6.0e-17
AXU74643.1|1037339_1038038_+|terminase	phage-related terminase small subunit-like protein	terminase	A0A2H4J6P5	uncultured_Caudovirales_phage	32.1	1.5e-08
AXU74644.1|1038027_1039371_+|terminase	phage terminase, large subunit, pbsx family	terminase	A0A2P1JTW5	Anoxybacillus_phage	61.6	4.5e-147
AXU74645.1|1039370_1040894_+|portal	Phage portal protein, SPP1 Gp6-like	portal	A0A0A7RW62	Clostridium_phage	65.9	1.9e-189
AXU74646.1|1040906_1042526_+	hypothetical protein	NA	A0A2H4J048	uncultured_Caudovirales_phage	42.7	1.7e-71
AXU74647.1|1042527_1042680_+	hypothetical protein	NA	NA	NA	NA	NA
AXU74648.1|1042747_1043401_+	phage scaffold protein	NA	I1TLE1	Bacillus_phage	45.3	6.9e-08
AXU74649.1|1043412_1043769_+	hypothetical protein	NA	A0A2H4J872	uncultured_Caudovirales_phage	70.3	1.5e-41
AXU74650.1|1043792_1044821_+	phage protein	NA	A0A1J1GG50	Clostridium_phage	99.1	8.7e-191
AXU74651.1|1044836_1045037_+	hypothetical protein	NA	NA	NA	NA	NA
AXU74652.1|1045039_1045357_+	hypothetical protein	NA	A0A2H4J040	uncultured_Caudovirales_phage	69.0	3.0e-33
AXU74653.1|1045353_1045737_+	hypothetical protein	NA	A0A2H4J057	uncultured_Caudovirales_phage	46.5	2.9e-22
AXU74654.1|1045749_1046160_+	hypothetical protein	NA	B6SBT4	Clostridium_virus	58.5	1.6e-42
AXU74655.1|1046161_1046986_+	hypothetical protein	NA	A0A0A8WJN6	Clostridium_phage	82.5	1.3e-128
AXU74656.1|1046998_1047202_+	hypothetical protein	NA	A0A0A8WEX5	Clostridium_phage	98.5	1.6e-27
AXU74657.1|1047203_1048625_+|tail	putative tail sheath protein	tail	J9QE70	Clostridium_phage	96.6	4.5e-262
AXU74658.1|1048640_1049054_+	XkdM-like protein	NA	J9QE18	Clostridium_phage	100.0	2.8e-71
AXU74659.1|1049137_1049632_+	XkdN-like protein	NA	J9QDX1	Clostridium_phage	95.7	4.0e-77
AXU74660.1|1049808_1050852_+|tail	phage tail tape measure protein, TP901 family	tail	J9QEB7	Clostridium_phage	96.7	7.5e-65
AXU74661.1|1051803_1054899_+|tail	phage tail tape measure protein, TP901 family	tail	J9QEB7	Clostridium_phage	89.4	0.0e+00
AXU74662.1|1054980_1055709_+	hypothetical protein	NA	A0A0A8WEX9	Clostridium_phage	62.9	5.4e-54
AXU74663.1|1055772_1056444_+	SH3 type 3 domain-containing protein	NA	B6SBU2	Clostridium_virus	96.0	2.2e-118
AXU74664.1|1056440_1057403_+	XkdQ-like protein	NA	A0A0A8WIZ7	Clostridium_phage	96.6	2.9e-172
AXU74665.1|1057395_1057758_+	hypothetical protein	NA	A0A0A8WFG6	Clostridium_phage	94.2	4.4e-57
AXU74666.1|1057735_1058194_+	XkdS-like protein	NA	J9QEB8	Clostridium_phage	95.4	3.4e-78
AXU74667.1|1058202_1059339_+|plate	putative baseplate J-like protein	plate	J9QE72	Clostridium_phage	97.1	1.7e-203
AXU74668.1|1059335_1060106_+	XkdU related phage protein	NA	B6SBU7	Clostridium_virus	98.8	6.8e-140
AXU74669.1|1060106_1060487_+	hypothetical protein	NA	B6SBU8	Clostridium_virus	96.0	1.9e-63
AXU74670.1|1060498_1061116_+|tail	phage tail fiber protein	tail	B6SBU9	Clostridium_virus	88.9	4.9e-80
AXU74671.1|1061132_1062623_+	hypothetical protein	NA	J9QE87	Clostridium_phage	61.3	1.4e-120
AXU74672.1|1062637_1062931_+	hypothetical protein	NA	E2ELK6	Clostridium_phage	58.8	4.1e-29
AXU74673.1|1062930_1063113_+	hypothetical protein	NA	A0A0K2SUB6	Clostridium_phage	94.9	7.2e-24
AXU74674.1|1063146_1064379_+|tail	tail fiber protein	tail	B6SBV3	Clostridium_virus	97.6	6.9e-227
AXU74675.1|1064375_1064675_+	phage protein	NA	J9QDX4	Clostridium_phage	98.0	1.2e-47
AXU74676.1|1064846_1065077_+	Hemolysin XhlA	NA	A0A0A8WJR7	Clostridium_phage	100.0	7.4e-34
AXU74677.1|1065096_1065354_+	phage membrane protein	NA	A0A0A8WF70	Clostridium_phage	83.5	1.5e-35
AXU74678.1|1065353_1066169_+	phage endolysin	NA	Q24LG3	Clostridium_phage	96.7	9.1e-151
AXU74679.1|1066185_1066482_+	hypothetical protein	NA	Q24LG2	Clostridium_phage	95.9	4.0e-48
AXU74680.1|1066491_1066695_-	hypothetical protein	NA	A0A0A8WIX8	Clostridium_phage	86.4	8.6e-26
AXU74681.1|1066845_1067295_+	hypothetical protein	NA	A0A0K2SUB9	Clostridium_phage	87.9	2.5e-62
AXU74682.1|1067306_1067942_+	putative bacteriophage protein	NA	A0A0K2SUH1	Clostridium_phage	92.9	9.3e-111
AXU74683.1|1068018_1068489_+	hypothetical protein	NA	A0A0A8WFC2	Clostridium_phage	78.1	2.3e-61
AXU74684.1|1068787_1069087_-	hypothetical protein	NA	A0A0A8WJK3	Clostridium_phage	97.0	2.5e-45
AXU74685.1|1069296_1069497_-	hypothetical protein	NA	NA	NA	NA	NA
AXU74686.1|1069509_1069932_-	hypothetical protein	NA	NA	NA	NA	NA
AXU74687.1|1070089_1070308_+	Helix-turn-helix protein	NA	NA	NA	NA	NA
AXU74688.1|1070831_1071008_-	hypothetical protein	NA	NA	NA	NA	NA
AXU74689.1|1071475_1071757_+	phage regulatory protein	NA	Q24LF7	Clostridium_phage	100.0	6.3e-43
AXU74690.1|1071796_1072183_+	phage regulatory protein	NA	X5JAW5	Clostridium_phage	99.2	2.5e-66
1072369:1072391	attR	GGAACTATTCCAAAGTATAATAA	NA	NA	NA	NA
>prophage 4
CP012312	Clostridioides difficile strain DSM 28670 chromosome, complete genome	4191653	1480119	1504493	4191653	tail	Clostridium_phage(54.55%)	29	NA	NA
AXU75058.1|1480119_1480320_+	cold shock protein	NA	A0A1W6JNX5	Morganella_phage	66.2	2.7e-16
AXU75059.1|1480740_1481169_+	regulatory protein	NA	NA	NA	NA	NA
AXU75060.1|1481311_1482067_-	peptidyl-prolyl isomerase	NA	NA	NA	NA	NA
AXU75061.1|1482187_1482604_-	hypothetical protein	NA	NA	NA	NA	NA
AXU75062.1|1482767_1483274_-	phage protein	NA	A0A0A8WEK1	Clostridium_phage	67.1	4.0e-56
AXU75063.1|1483355_1483676_-	phage repressor	NA	A0A0A8WE28	Clostridium_phage	54.5	3.7e-23
AXU75064.1|1483844_1484042_+	phage regulatory protein	NA	NA	NA	NA	NA
AXU75065.1|1484146_1484587_+	DNA-binding protein	NA	A0A090EUN5	Clostridium_phage	50.7	1.3e-31
AXU75066.1|1484835_1485279_+	hypothetical protein	NA	A0A1V0DZX9	Clostridioides_phage	36.7	2.0e-19
AXU75067.1|1485283_1486348_+	phage-like element pbsx protein XkdK	NA	A0A1V0DZX4	Clostridioides_phage	53.1	1.2e-97
AXU75068.1|1486361_1486790_+	phage-like element pbsx protein XkdM	NA	A0A1V0DZX1	Clostridioides_phage	51.8	2.8e-34
AXU75069.1|1486903_1487350_+	Phage XkdN-like protein	NA	A0A090EUD0	Clostridium_phage	36.0	8.2e-13
AXU75070.1|1487376_1487544_+	hypothetical protein	NA	NA	NA	NA	NA
AXU75071.1|1487543_1489943_+	phage protein	NA	A0A1V0DZX3	Clostridioides_phage	45.6	6.4e-19
AXU75072.1|1489942_1490365_+	phage-like element pbsx protein xkdP	NA	A0A090DBR9	Clostridium_phage	71.1	1.7e-52
AXU75073.1|1490646_1492179_+	phage cell wall hydrolase	NA	A0A1V0DZX6	Clostridioides_phage	79.7	1.8e-237
AXU75074.1|1492194_1492521_+	hypothetical protein	NA	J9QE86	Clostridium_phage	94.4	2.3e-52
AXU75075.1|1492520_1492949_+	phage protein	NA	A0A0A8WJ32	Clostridium_phage	82.4	5.8e-64
AXU75076.1|1492941_1493994_+	phage protein	NA	A0A0A8WFP3	Clostridium_phage	70.1	3.0e-138
AXU75077.1|1493990_1494689_+	phage protein	NA	A0A090D815	Clostridium_phage	56.9	5.5e-48
AXU75078.1|1494689_1495676_+|tail	phage tail fiber protein	tail	A0A2H4J039	uncultured_Caudovirales_phage	45.8	3.4e-59
AXU75079.1|1495697_1500929_+	RCC1 domain-containing protein, alpha-tubulin suppressor	NA	A0A0A8WEY5	Clostridium_phage	31.3	8.9e-82
AXU75080.1|1500945_1501299_+	hypothetical protein	NA	A0A0A8WJF2	Clostridium_phage	42.1	5.5e-12
AXU75081.1|1501561_1501822_+	hypothetical protein	NA	E2ELK7	Clostridium_phage	90.6	9.9e-35
AXU75082.1|1502026_1502482_-	hypothetical protein	NA	NA	NA	NA	NA
AXU75083.1|1502709_1503129_-	phage regulatory protein	NA	S5MUV6	Brevibacillus_phage	37.2	5.4e-06
AXU75084.1|1503427_1503637_+	phage regulatory protein	NA	Q5YAA3	Bacillus_phage	47.2	5.9e-06
AXU75085.1|1503668_1503878_+	hypothetical protein	NA	NA	NA	NA	NA
AXU75086.1|1504094_1504493_-	phage regulatory protein	NA	A0A1L2JY18	Aeribacillus_phage	29.7	2.7e-07
>prophage 5
CP012312	Clostridioides difficile strain DSM 28670 chromosome, complete genome	4191653	1584892	1594621	4191653		Pandoravirus(37.5%)	11	NA	NA
AXU75154.1|1584892_1585477_+	para-aminobenzoate synthase glutamine amidotransferase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	53.7	1.7e-58
AXU75155.1|1585478_1586828_+	para-aminobenzoate synthase component I	NA	S4VNU7	Pandoravirus	41.2	2.9e-37
AXU75156.1|1586817_1587561_+	aminodeoxychorismate lyase	NA	NA	NA	NA	NA
AXU75157.1|1587594_1588296_+	hypothetical protein	NA	NA	NA	NA	NA
AXU75158.1|1588321_1588894_+	GTP cyclohydrolase I	NA	E7DN69	Pneumococcus_phage	51.6	3.0e-44
AXU75159.1|1588959_1589751_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	30.0	9.8e-25
AXU75160.1|1589761_1590127_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
AXU75161.1|1590119_1590626_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase	NA	S4VNV0	Pandoravirus	37.3	1.3e-14
AXU75162.1|1590606_1591392_+	chorismate biosynthesis-like protein	NA	E3T537	Cafeteria_roenbergensis_virus	27.9	1.7e-13
AXU75163.1|1591646_1593437_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	32.6	1.2e-51
AXU75164.1|1593454_1594621_+	RNA polymerase sigma factor (sigma-43)	NA	M4SMP8	Cyanophage	36.8	9.6e-37
>prophage 6
CP012312	Clostridioides difficile strain DSM 28670 chromosome, complete genome	4191653	1719877	1774328	4191653	capsid,portal,head,terminase,tail	Clostridium_phage(85.94%)	73	NA	NA
AXU75276.1|1719877_1721572_+	acetolactate synthase large subunit	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	29.4	3.8e-50
AXU75277.1|1721929_1723060_-	prophage lambdaba04, site-specific recombinase	NA	A0A0A8WIE1	Clostridium_phage	99.7	2.9e-216
AXU75278.1|1723299_1723806_-	putative Zn peptidase	NA	A0A0A8WEK1	Clostridium_phage	100.0	1.5e-87
AXU75279.1|1723881_1724430_-	phage regulatory protein	NA	A0A0A8WJ60	Clostridium_phage	98.4	2.2e-92
AXU75280.1|1724441_1725053_-	phage repressor	NA	A0A0A8WFJ2	Clostridium_phage	76.3	7.5e-25
AXU75281.1|1725195_1725429_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AXU75282.1|1725633_1725813_-	Mnt	NA	A0A0A8WG21	Clostridium_phage	70.9	1.9e-13
AXU75283.1|1725889_1726027_+	hypothetical protein	NA	A0A0A8WFX8	Clostridium_phage	95.6	8.3e-17
AXU75284.1|1726012_1726324_-	Ribbon-helix-helix protein, copG family	NA	A0A0A8WJU4	Clostridium_phage	97.1	4.6e-47
AXU75285.1|1726445_1726616_+	hypothetical protein	NA	A0A0A8WFG5	Clostridium_phage	87.5	6.9e-21
AXU75286.1|1726618_1727422_+	phage antirepressor protein	NA	A0A0A8WIE3	Clostridium_phage	96.2	6.3e-80
AXU75287.1|1727468_1727678_+	hypothetical protein	NA	NA	NA	NA	NA
AXU75288.1|1727687_1728062_-	hypothetical protein	NA	A0A1L5C299	Pseudoalteromonas_phage	37.1	2.2e-11
AXU75289.1|1728137_1728335_+	phage regulatory protein	NA	A0A0A8WE47	Clostridium_phage	92.3	4.9e-26
AXU75290.1|1728365_1728758_+	Helix-turn-helix domain protein	NA	A0A0A8WHS2	Clostridium_phage	95.3	5.1e-59
AXU75291.1|1728738_1728888_+	hypothetical protein	NA	A0A0A8WIF8	Clostridium_phage	89.4	4.2e-14
AXU75292.1|1728958_1729396_+	hypothetical protein	NA	NA	NA	NA	NA
AXU75293.1|1729407_1730574_+	phage-like protein	NA	S5MUB5	Brevibacillus_phage	55.9	1.1e-117
AXU75294.1|1730588_1730924_+	hypothetical protein	NA	NA	NA	NA	NA
AXU75295.1|1730975_1731548_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
AXU75296.1|1731570_1732143_+	phage-like protein	NA	S5MC21	Brevibacillus_phage	66.1	1.5e-62
AXU75297.1|1732142_1734101_+	dna-directed dna polymerase i	NA	A0A0A7RTL3	Clostridium_phage	68.8	3.3e-263
AXU75298.1|1734112_1736530_+	virulence-associated protein e	NA	A0A0A7RTG3	Clostridium_phage	67.8	0.0e+00
AXU75299.1|1736495_1736639_+	hypothetical protein	NA	NA	NA	NA	NA
AXU75300.1|1736811_1737138_+	VRR-NUC domain-containing protein	NA	A0A0A7RTE1	Clostridium_phage	51.7	8.4e-15
AXU75301.1|1737086_1738457_+	phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase	NA	A0A1S7FYY5	Listeria_phage	60.3	8.4e-157
AXU75302.1|1738610_1739090_+	sigma-70 region 4 type 2	NA	I2E8Y5	Clostridium_phage	51.6	3.3e-36
AXU75303.1|1739614_1739812_+	hypothetical protein	NA	A0A0A8WJQ8	Clostridium_phage	95.4	2.8e-29
AXU75304.1|1740114_1741089_+	hypothetical protein	NA	NA	NA	NA	NA
AXU75305.1|1741109_1741619_+	hypothetical protein	NA	NA	NA	NA	NA
AXU75306.1|1741689_1742382_+	phage DNA-binding protein	NA	A0A0A8WFS6	Clostridium_phage	98.7	3.4e-122
AXU75307.1|1742359_1743613_+|terminase	phage terminase large subunit	terminase	A0A0A8WFI5	Clostridium_phage	99.3	3.0e-246
AXU75308.1|1743618_1745058_+|portal	phage portal protein	portal	A0A0A8WIH2	Clostridium_phage	98.7	4.5e-278
AXU75309.1|1745047_1746445_+|head	phage minor head protein	head	A0A0A8WJ84	Clostridium_phage	97.0	8.0e-264
AXU75310.1|1746459_1746660_+	hypothetical protein	NA	A0A0A8WJ56	Clostridium_phage	100.0	2.3e-31
AXU75311.1|1746725_1747289_+	phage scaffold protein	NA	A0A0A8WFU8	Clostridium_phage	99.5	6.4e-87
AXU75312.1|1747300_1748200_+|capsid	phage major capsid protein	capsid	A0A0A8WFI8	Clostridium_phage	99.3	1.1e-168
AXU75313.1|1748199_1748433_+	hypothetical protein	NA	A0A0A8WFD0	Clostridium_phage	96.1	5.4e-32
AXU75314.1|1748442_1748844_+	hypothetical protein	NA	X5JAJ0	Clostridium_phage	97.7	1.6e-68
AXU75315.1|1748837_1749185_+	phage protein	NA	X5JAV9	Clostridium_phage	98.3	1.6e-56
AXU75316.1|1749184_1749610_+	phage protein	NA	X5JB35	Clostridium_phage	98.6	1.9e-75
AXU75317.1|1749602_1750040_+	phage protein	NA	X5JAB5	Clostridium_phage	92.4	2.8e-74
AXU75318.1|1750023_1750209_+	hypothetical protein	NA	X5J9Z6	Clostridium_phage	87.9	6.4e-20
AXU75319.1|1750209_1751520_+	phage protein	NA	X5JAJ1	Clostridium_phage	93.3	6.2e-234
AXU75320.1|1751536_1752007_+	phage protein	NA	A0A0A8WJ62	Clostridium_phage	82.1	7.0e-71
AXU75321.1|1752078_1752519_+	phage protein	NA	X5JAB6	Clostridium_phage	63.7	8.6e-47
AXU75322.1|1753361_1753466_+	hypothetical protein	NA	A0A090D809	Clostridium_phage	73.5	1.9e-05
AXU75323.1|1755136_1756018_+	hypothetical protein	NA	NA	NA	NA	NA
AXU75324.1|1756088_1758377_+|tail	phage tail tape measure protein	tail	A0A0A8WJT6	Clostridium_phage	71.8	7.9e-277
AXU75325.1|1758392_1759085_+	phage cell wall hydrolase	NA	X5J9Z8	Clostridium_phage	92.6	4.0e-115
AXU75326.1|1759077_1760970_+	phage cell wall hydrolase	NA	A3QSB3	Clostridium_virus	89.4	0.0e+00
AXU75327.1|1760983_1761244_+	phage protein	NA	A3QSB4	Clostridium_virus	87.2	3.8e-34
AXU75328.1|1761248_1761668_+	phage protein	NA	X5JB38	Clostridium_phage	99.3	3.0e-73
AXU75329.1|1761668_1762718_+	phage protein	NA	A0A0A8WJT7	Clostridium_phage	96.8	9.8e-190
AXU75330.1|1762710_1763328_+	phage protein	NA	A0A0A8WFE8	Clostridium_phage	96.1	2.0e-113
AXU75331.1|1763339_1764365_+|tail	phage tail fiber protein	tail	A3QSB7	Clostridium_virus	96.2	1.0e-159
AXU75332.1|1764381_1766070_+	Glycine rich protein	NA	A0A090EUF1	Clostridium_phage	99.6	2.1e-290
AXU75333.1|1766083_1766377_+	hypothetical protein	NA	A0A090DBT2	Clostridium_phage	82.5	3.1e-37
AXU75334.1|1766376_1766559_+	hypothetical protein	NA	J9QDY8	Clostridium_phage	96.6	1.1e-24
AXU75335.1|1766590_1766782_+	hypothetical protein	NA	A3QSB9	Clostridium_virus	92.1	6.4e-23
AXU75336.1|1766798_1767944_+	streptogramin lyase	NA	E2ELJ9	Clostridium_phage	83.5	1.2e-185
AXU75337.1|1768135_1769266_+	Ig domain-containing protein	NA	E2ELJ9	Clostridium_phage	34.5	2.8e-49
AXU75338.1|1769282_1769648_+	hypothetical protein	NA	E2ELK0	Clostridium_phage	95.9	1.6e-54
AXU75339.1|1769648_1769783_+	phage protein, XkdX family	NA	E2ELK1	Clostridium_phage	90.9	2.0e-15
AXU75340.1|1769993_1771340_+	hypothetical protein	NA	E2ELK2	Clostridium_phage	52.4	1.0e-05
AXU75341.1|1771339_1771519_+	hypothetical protein	NA	J9QDY8	Clostridium_phage	84.5	2.6e-18
AXU75342.1|1771559_1771790_+	Hemolysin XhlA	NA	A0A0K2SUG6	Clostridium_phage	50.0	7.7e-15
AXU75343.1|1771805_1772066_+	phage membrane protein	NA	A0A0A8WF70	Clostridium_phage	96.5	3.9e-39
AXU75344.1|1772062_1772869_+	phage-related cell wall hydrolase	NA	A0A0A8WE15	Clostridium_phage	97.0	3.3e-153
AXU75345.1|1772913_1773090_-	putative PemI	NA	A0A0A8WHQ4	Clostridium_phage	96.6	6.9e-24
AXU75346.1|1773334_1773463_-	hypothetical protein	NA	A0A0A8WIC8	Clostridium_phage	76.2	5.0e-08
AXU75347.1|1773785_1773962_-	putative PemI	NA	A0A0A8WHQ4	Clostridium_phage	63.8	1.4e-13
AXU75348.1|1774199_1774328_-	hypothetical protein	NA	A0A0A8WEJ5	Clostridium_phage	95.2	5.8e-12
>prophage 7
CP012312	Clostridioides difficile strain DSM 28670 chromosome, complete genome	4191653	2127443	2134687	4191653	transposase	Clostridium_phage(50.0%)	8	NA	NA
AXU75672.1|2127443_2128232_-	phage-related cell wall hydrolase	NA	A0A0A8WE15	Clostridium_phage	62.3	3.3e-89
AXU75673.1|2128370_2128808_-	phage-related deoxycytidylate deaminase	NA	A7KUY9	Bacillus_phage	54.3	5.9e-32
AXU75674.1|2129042_2129177_-	hypothetical protein	NA	B6SBZ7	Clostridium_virus	78.0	6.2e-09
AXU75675.1|2129645_2129945_+|transposase	transposase	transposase	A0A0A8WJI7	Clostridium_phage	94.2	2.7e-20
AXU75676.1|2130221_2130731_+	phage repressor	NA	A0A2H4J6F9	uncultured_Caudovirales_phage	43.8	1.0e-06
AXU75677.1|2131120_2131657_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
AXU75678.1|2132093_2132894_-	ABC transporter permease	NA	NA	NA	NA	NA
AXU75679.1|2133088_2134687_-	site-specific recombinase	NA	A0A1L2BY67	Clostridium_phage	44.2	2.3e-113
>prophage 8
CP012312	Clostridioides difficile strain DSM 28670 chromosome, complete genome	4191653	2557466	2621244	4191653	capsid,portal,terminase,tail	Clostridium_phage(82.05%)	98	NA	NA
AXU76052.1|2557466_2559536_-	two-component sensor histidine kinase	NA	W8CYF6	Bacillus_phage	25.5	4.4e-16
AXU76053.1|2559731_2560424_-	two-component system response regulator	NA	W8CYM9	Bacillus_phage	33.6	2.4e-35
AXU76054.1|2561020_2561410_-	regulatory protein	NA	A0A0A8WFF9	Clostridium_phage	95.2	1.7e-59
AXU76055.1|2561628_2561862_+	transcriptional regulator	NA	NA	NA	NA	NA
AXU76056.1|2561845_2562259_+	hypothetical protein	NA	NA	NA	NA	NA
AXU76057.1|2562277_2562478_+	hypothetical protein	NA	NA	NA	NA	NA
AXU76058.1|2562855_2563173_+	hypothetical protein	NA	NA	NA	NA	NA
AXU76059.1|2563212_2563509_-	hypothetical protein	NA	Q24LG2	Clostridium_phage	94.9	2.6e-47
AXU76060.1|2563532_2564345_-	N-acetylmuramoyl-l-alanine amidase	NA	A0A0A8WJ04	Clostridium_phage	92.6	5.5e-148
AXU76061.1|2564344_2564602_-	phage membrane protein	NA	A0A0A8WJ67	Clostridium_phage	100.0	4.1e-41
AXU76062.1|2564621_2564852_-	Hemolysin XhlA	NA	A0A0A8WJR7	Clostridium_phage	100.0	7.4e-34
AXU76063.1|2565022_2565346_-	phage protein	NA	A0A0A8WJ34	Clostridium_phage	99.1	7.2e-51
AXU76064.1|2565346_2566387_-	hypothetical protein	NA	A0A0A8WIB8	Clostridium_phage	98.8	6.3e-189
AXU76065.1|2566399_2566615_-	hypothetical protein	NA	A0A1V0DZY5	Clostridioides_phage	85.9	8.5e-24
AXU76066.1|2566649_2566832_-	hypothetical protein	NA	A0A090D845	Clostridium_phage	91.7	7.9e-23
AXU76067.1|2566831_2567125_-	hypothetical protein	NA	A0A2R2ZGK0	Clostridioides_phage	77.3	2.9e-35
AXU76068.1|2567138_2568632_-	hypothetical protein	NA	J9QE87	Clostridium_phage	60.1	2.1e-121
AXU76069.1|2568649_2569675_-|tail	phage tail fiber protein	tail	A0A0A8WIF4	Clostridium_phage	93.1	1.1e-145
AXU76070.1|2569686_2570304_-	phage protein	NA	A0A0A8WII4	Clostridium_phage	98.5	4.7e-115
AXU76071.1|2570296_2571346_-	phage protein	NA	A0A0A8WFK0	Clostridium_phage	94.6	3.3e-185
AXU76072.1|2571346_2571766_-	phage protein	NA	A0A0A8WJV8	Clostridium_phage	92.8	2.4e-70
AXU76073.1|2571770_2572031_-	phage protein	NA	A0A0A8WJ65	Clostridium_phage	96.5	2.5e-38
AXU76074.1|2572044_2574012_-	phage cell wall hydrolase	NA	A0A0A8WIF2	Clostridium_phage	81.4	7.5e-284
AXU76075.1|2574004_2574706_-	phage cell wall hydrolase	NA	A0A0A8WFE5	Clostridium_phage	89.7	1.8e-115
AXU76076.1|2574717_2577069_-|tail	phage tail tape measure protein	tail	X5JAB7	Clostridium_phage	46.0	3.9e-178
AXU76077.1|2577125_2577896_-	hypothetical protein	NA	X5JB37	Clostridium_phage	81.6	3.5e-104
AXU76078.1|2578025_2578175_-	hypothetical protein	NA	NA	NA	NA	NA
AXU76079.1|2578174_2578993_-	prophage antirepressor-related protein	NA	X5JAW1	Clostridium_phage	54.0	1.9e-63
AXU76080.1|2579113_2579356_-	hypothetical protein	NA	X5JAJ2	Clostridium_phage	56.9	3.2e-11
AXU76081.1|2580217_2580376_-	hypothetical protein	NA	NA	NA	NA	NA
AXU76082.1|2580408_2581188_-	prophage antirepressor-related protein	NA	X5JAW1	Clostridium_phage	50.7	4.9e-37
AXU76083.1|2581431_2581635_+	DNA-binding protein	NA	NA	NA	NA	NA
AXU76084.1|2582751_2582913_-	hypothetical protein	NA	NA	NA	NA	NA
AXU76085.1|2582972_2583839_-	prophage antirepressor-related protein	NA	X5JAW1	Clostridium_phage	80.5	3.8e-131
AXU76086.1|2583960_2584194_-	hypothetical protein	NA	NA	NA	NA	NA
AXU76087.1|2584597_2584756_-	hypothetical protein	NA	J9QED5	Clostridium_phage	56.9	1.5e-06
AXU76088.1|2585078_2585519_-	phage protein	NA	X5JAB6	Clostridium_phage	96.6	1.4e-76
AXU76089.1|2585523_2585781_-	hypothetical protein	NA	A0A0A8WFW0	Clostridium_phage	76.5	8.9e-28
AXU76090.1|2585833_2586310_-	phage protein	NA	A0A0A8WJ62	Clostridium_phage	91.4	9.5e-76
AXU76091.1|2586329_2587640_-	phage protein	NA	X5JAJ1	Clostridium_phage	95.2	5.1e-236
AXU76092.1|2587640_2587826_-	hypothetical protein	NA	X5J9Z6	Clostridium_phage	89.7	1.3e-20
AXU76093.1|2587809_2588247_-	phage protein	NA	X5JAB5	Clostridium_phage	93.8	1.3e-74
AXU76094.1|2588239_2588665_-	phage protein	NA	A0A0A8WFV8	Clostridium_phage	63.1	1.3e-47
AXU76095.1|2588664_2589027_-	phage protein	NA	X5JAV9	Clostridium_phage	89.2	3.3e-52
AXU76096.1|2589020_2589422_-	hypothetical protein	NA	A0A0A8WIE8	Clostridium_phage	97.0	1.1e-67
AXU76097.1|2589431_2589665_-	hypothetical protein	NA	A0A0A8WFD0	Clostridium_phage	96.1	5.4e-32
AXU76098.1|2589664_2590564_-|capsid	phage major capsid protein	capsid	X5J9Z5	Clostridium_phage	92.3	5.5e-157
AXU76099.1|2590575_2591139_-	phage scaffold protein	NA	A0A0A8WFU8	Clostridium_phage	87.2	1.9e-83
AXU76100.1|2591206_2591455_-	hypothetical protein	NA	NA	NA	NA	NA
AXU76101.1|2591456_2592992_-	phage protein	NA	A0A0A8WIE7	Clostridium_phage	92.7	2.5e-186
AXU76102.1|2592981_2594421_-|portal	phage portal protein	portal	A3QS94	Clostridium_virus	98.7	1.7e-277
AXU76103.1|2594426_2595680_-|terminase	phage terminase large subunit	terminase	X5JAB3	Clostridium_phage	99.3	8.0e-247
AXU76104.1|2595657_2596341_-	phage DNA-binding protein	NA	A0A0A8WFS6	Clostridium_phage	87.4	2.0e-103
AXU76105.1|2596399_2598433_-	putative NTPase (NACHT family)	NA	X5JAK5	Clostridium_phage	83.0	0.0e+00
AXU76106.1|2598917_2599847_-	hypothetical protein	NA	NA	NA	NA	NA
AXU76107.1|2600564_2601047_-	putative sigma factor	NA	B6SBZ4	Clostridium_virus	93.8	1.0e-69
AXU76108.1|2601158_2601899_-	phage anti-repressor protein	NA	A0A090DCZ8	Clostridium_phage	54.8	1.8e-65
AXU76109.1|2601961_2602369_-	phage protein	NA	A0A090D860	Clostridium_phage	92.5	1.8e-62
AXU76110.1|2602358_2602793_-	phage protein	NA	J9QEC8	Clostridium_phage	59.7	2.9e-39
AXU76111.1|2602946_2603177_-	gp91	NA	J9QD24	Clostridium_phage	90.8	2.8e-33
AXU76112.1|2603199_2603520_-	hypothetical protein	NA	J9QDY2	Clostridium_phage	82.2	1.4e-35
AXU76113.1|2603546_2603939_-	hypothetical protein	NA	NA	NA	NA	NA
AXU76114.1|2603941_2604661_-	phage protein	NA	Q24LD4	Clostridium_phage	88.4	2.1e-114
AXU76115.1|2604670_2605675_-	phage protein	NA	J9QE81	Clostridium_phage	94.6	8.2e-178
AXU76116.1|2605686_2605896_-	hypothetical protein	NA	A0A0A8WJB6	Clostridium_phage	94.2	1.5e-28
AXU76117.1|2606063_2606228_-	hypothetical protein	NA	NA	NA	NA	NA
AXU76118.1|2606220_2606346_-	hypothetical protein	NA	X5JA07	Clostridium_phage	63.4	2.9e-08
AXU76119.1|2606342_2606582_-	hypothetical protein	NA	NA	NA	NA	NA
AXU76120.1|2606581_2606755_-	hypothetical protein	NA	Q24LE0	Clostridium_phage	96.5	7.0e-29
AXU76121.1|2606786_2606981_-	hypothetical protein	NA	NA	NA	NA	NA
AXU76122.1|2607003_2607156_-	hypothetical protein	NA	NA	NA	NA	NA
AXU76123.1|2607124_2607481_-	hypothetical protein	NA	A0A0A8WFK7	Clostridium_phage	88.1	3.4e-54
AXU76124.1|2607499_2607751_-	hypothetical protein	NA	J9QD22	Clostridium_phage	88.0	9.0e-33
AXU76125.1|2607753_2608152_-	YopX protein	NA	A0A0A8WFY4	Clostridium_phage	96.9	5.9e-71
AXU76126.1|2608218_2609148_-	phage replication protein	NA	A0A0A8WHS7	Clostridium_phage	65.9	1.1e-96
AXU76127.1|2609162_2609996_-	RecT	NA	S6AVW6	Thermus_phage	46.2	1.2e-54
AXU76128.1|2610008_2610971_-	phage-type endonuclease	NA	A8ATY5	Listeria_phage	38.1	3.3e-59
AXU76129.1|2611093_2611321_-	hypothetical protein	NA	A0A0A8WFM5	Clostridium_phage	100.0	3.5e-36
AXU76130.1|2611320_2611479_-	hypothetical protein	NA	A0A0A8WJW6	Clostridium_phage	59.6	2.0e-06
AXU76131.1|2611634_2611823_+	Arc-like DNA binding domain protein	NA	A0A0A8WG21	Clostridium_phage	51.9	4.8e-07
AXU76132.1|2611800_2611941_-	Mnt	NA	NA	NA	NA	NA
AXU76133.1|2611972_2612161_-	hypothetical protein	NA	X5JAJ9	Clostridium_phage	96.8	3.9e-25
AXU76134.1|2612157_2612262_-	hypothetical protein	NA	A0A0A8WIG3	Clostridium_phage	78.1	5.3e-08
AXU76135.1|2612261_2612513_-	hypothetical protein	NA	A0A0A8WHS2	Clostridium_phage	64.9	6.7e-20
AXU76136.1|2612569_2613346_-	putative antirepressor	NA	A6XMM0	Bacillus_virus	63.5	2.3e-26
AXU76137.1|2613361_2613805_-	putative prophage LambdaCh01, transcriptional regulator	NA	A0A1L2BY71	Clostridium_phage	50.0	9.3e-17
AXU76138.1|2613837_2614029_-	hypothetical protein	NA	NA	NA	NA	NA
AXU76139.1|2614196_2614541_+	phage regulatory protein	NA	X2CXD8	Lactobacillus_phage	35.0	4.4e-06
AXU76140.1|2614703_2615012_+	transcriptional regulator	NA	S5MTZ5	Brevibacillus_phage	32.3	6.7e-06
AXU76141.1|2615072_2615315_+	putative transcriptional regulator	NA	A0A0K2CNE2	Brevibacillus_phage	51.3	6.9e-14
AXU76142.1|2615518_2615710_-	transcriptional regulator	NA	NA	NA	NA	NA
AXU76143.1|2615875_2616241_+	DNA-binding phage protein	NA	A0A0P0IZG9	Lactobacillus_phage	44.0	9.1e-10
AXU76144.1|2616287_2616428_-	hypothetical protein	NA	NA	NA	NA	NA
AXU76145.1|2616683_2616911_+	phage regulatory protein	NA	J9QEC2	Clostridium_phage	70.4	1.3e-17
AXU76146.1|2616990_2618550_-	cell surface protein	NA	A0A2R2ZGK6	Clostridioides_phage	52.7	4.2e-72
AXU76147.1|2618772_2619897_+	prophage lambdaba04, site-specific recombinase	NA	A0A0A8WIE1	Clostridium_phage	61.7	1.3e-134
AXU76148.1|2620570_2620762_-	repressor	NA	A0A0A8WFF9	Clostridium_phage	68.9	1.9e-14
AXU76149.1|2620866_2621244_-	regulatory protein	NA	A0A0A8WJU1	Clostridium_phage	92.0	1.3e-54
>prophage 9
CP012312	Clostridioides difficile strain DSM 28670 chromosome, complete genome	4191653	2862408	2875262	4191653	tRNA,holin,integrase	Clostridium_phage(60.0%)	13	2863033:2863049	2877282:2877298
AXU76367.1|2862408_2862792_-	regulatory protein	NA	A0A090DCS9	Clostridium_phage	89.8	4.1e-61
2863033:2863049	attL	AAAACTAGAGAAATTTA	NA	NA	NA	NA
AXU76368.1|2863171_2863348_+	hypothetical protein	NA	NA	NA	NA	NA
AXU76369.1|2863573_2863774_+	cold shock protein	NA	A0A1X9IGI9	Lactococcus_phage	68.3	5.0e-18
AXU76370.1|2864219_2865542_+	two-component sensor histidine kinase	NA	X5JAC0	Clostridium_phage	59.4	4.6e-136
AXU76371.1|2865584_2866166_+	accessory gene regulator protein	NA	X5JB40	Clostridium_phage	49.2	1.0e-42
AXU76372.1|2866183_2866345_+	autoinducer prepeptide	NA	NA	NA	NA	NA
AXU76373.1|2866366_2867164_-	phage-related cell wall hydrolase	NA	A0A0A8WE15	Clostridium_phage	90.7	1.1e-140
AXU76374.1|2867160_2867421_-|holin	holin	holin	A3QSC5	Clostridium_virus	77.6	7.9e-32
AXU76375.1|2868292_2868451_-	hypothetical protein	NA	J9QED5	Clostridium_phage	63.5	1.6e-08
AXU76376.1|2868808_2870179_-	cell surface protein	NA	A0A2R2ZGK6	Clostridioides_phage	45.1	1.5e-73
AXU76377.1|2870577_2871000_+|integrase	integrase	integrase	X5JB41	Clostridium_phage	69.8	4.4e-48
AXU76378.1|2871270_2871960_-	vanZF protein	NA	NA	NA	NA	NA
AXU76379.1|2872841_2875262_-|tRNA	leucyl-tRNA synthetase	tRNA	A0A2H4PQS0	Staphylococcus_phage	48.5	1.2e-214
2877282:2877298	attR	TAAATTTCTCTAGTTTT	NA	NA	NA	NA
>prophage 10
CP012312	Clostridioides difficile strain DSM 28670 chromosome, complete genome	4191653	3173594	3182547	4191653		Catovirus(50.0%)	8	NA	NA
AXU76629.1|3173594_3175508_-	capsular polysaccharide biosynthesis protein	NA	A0A1V0SAI8	Catovirus	29.8	1.1e-26
AXU76630.1|3175591_3176683_-	capsular polysaccharide biosynthesis glycosyl transferase	NA	A0A1V0SL50	Klosneuvirus	25.8	5.1e-16
AXU76631.1|3176688_3177984_-	UDP-glucose 6-dehydrogenase	NA	A0A127AXI2	Bacillus_phage	43.6	2.9e-90
AXU76632.1|3178009_3178762_-	teichuronic acid biosynthesis glycosyl transferase	NA	A0A1V0SAH6	Catovirus	40.5	4.6e-16
AXU76633.1|3178809_3179718_-	beta-glycosyltransferase	NA	NA	NA	NA	NA
AXU76634.1|3179739_3180489_-	teichuronic acid biosynthesis glycosyl transferase	NA	A0A1V0SAH6	Catovirus	38.8	1.2e-16
AXU76635.1|3180517_3181693_-	minor teichoic acid biosynthesis protein	NA	NA	NA	NA	NA
AXU76636.1|3181707_3182547_-	glycosyl transferase	NA	A0A2P1ELT8	Moumouvirus	26.3	7.0e-05
>prophage 11
CP012312	Clostridioides difficile strain DSM 28670 chromosome, complete genome	4191653	3791459	3845099	4191653	protease	Agrobacterium_phage(22.22%)	52	NA	NA
AXU77122.1|3791459_3792539_-|protease	protease	protease	A0A1B1IT49	uncultured_Mediterranean_phage	26.0	1.1e-15
AXU77123.1|3792694_3794044_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
AXU77124.1|3794308_3795937_-	sodium-dependent phosphate transporter	NA	NA	NA	NA	NA
AXU77125.1|3796060_3797665_-	FAD-dependent dehydrogenase	NA	NA	NA	NA	NA
AXU77126.1|3797712_3798030_-	hypothetical protein	NA	NA	NA	NA	NA
AXU77127.1|3798034_3798400_-	hypothetical protein	NA	NA	NA	NA	NA
AXU77128.1|3798480_3799518_-	protein translocase	NA	NA	NA	NA	NA
AXU77129.1|3799770_3800355_-	hypothetical protein	NA	NA	NA	NA	NA
AXU77130.1|3800369_3800813_-	hypothetical protein	NA	NA	NA	NA	NA
AXU77131.1|3800813_3801686_-	fimbrial assembly protein	NA	NA	NA	NA	NA
AXU77132.1|3801739_3802090_-	type IV pilin	NA	NA	NA	NA	NA
AXU77133.1|3802143_3803229_-	type IV pilus-assembly protein	NA	NA	NA	NA	NA
AXU77134.1|3803399_3804743_-	type IV pilus-assembly protein	NA	NA	NA	NA	NA
AXU77135.1|3804771_3805452_-	membrane protein	NA	NA	NA	NA	NA
AXU77136.1|3805843_3806923_-	ATP/GTP-binding protein	NA	NA	NA	NA	NA
AXU77137.1|3807500_3808871_+	transporter	NA	NA	NA	NA	NA
AXU77138.1|3809135_3809747_-	ribosome biogenesis GTP-binding protein YsxC	NA	NA	NA	NA	NA
AXU77139.1|3809736_3812100_-|protease	ATP-dependent protease La	protease	A0A0R6PGP8	Moraxella_phage	44.4	3.1e-175
AXU77140.1|3812279_3812792_+	chromate transport protein	NA	NA	NA	NA	NA
AXU77141.1|3812779_3813307_+	chromate transport protein	NA	NA	NA	NA	NA
AXU77142.1|3813377_3814628_-|protease	ATP-dependent protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	63.1	6.1e-146
AXU77143.1|3814646_3815231_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	58.8	9.3e-57
AXU77144.1|3815379_3816666_-	trigger factor	NA	NA	NA	NA	NA
AXU77145.1|3816859_3817330_-	phosphoesterase	NA	NA	NA	NA	NA
AXU77146.1|3817329_3818679_-	ribonuclease PH	NA	NA	NA	NA	NA
AXU77147.1|3818838_3820863_-	DNA ligase	NA	A0A0K2QQN8	Ralstonia_phage	37.6	4.9e-113
AXU77148.1|3821048_3821987_-	D-isomer specific 2-hydroxyacid dehydrogenase	NA	NA	NA	NA	NA
AXU77149.1|3822088_3822511_-	hypothetical protein	NA	NA	NA	NA	NA
AXU77150.1|3822698_3823982_+	transporter	NA	NA	NA	NA	NA
AXU77151.1|3824059_3824575_-	electron transport protein	NA	NA	NA	NA	NA
AXU77152.1|3824574_3825951_-	hydrogenase	NA	NA	NA	NA	NA
AXU77153.1|3825975_3826527_-	electron transport protein	NA	NA	NA	NA	NA
AXU77154.1|3826563_3826779_-	hypothetical protein	NA	NA	NA	NA	NA
AXU77155.1|3826747_3827581_-	formate dehydrogenase accessory protein	NA	NA	NA	NA	NA
AXU77156.1|3827629_3829309_-	formate dehydrogenase H	NA	NA	NA	NA	NA
AXU77157.1|3829357_3829774_-	formate dehydrogenase H	NA	NA	NA	NA	NA
AXU77158.1|3830024_3831083_-	ABC transporter permease	NA	NA	NA	NA	NA
AXU77159.1|3831293_3831953_-	two-component response regulator	NA	W8CYM9	Bacillus_phage	34.1	1.4e-29
AXU77160.1|3832263_3832887_+	hypothetical protein	NA	NA	NA	NA	NA
AXU77161.1|3832960_3833794_+	hypothetical protein	NA	NA	NA	NA	NA
AXU77162.1|3833899_3834475_-	hypothetical protein	NA	NA	NA	NA	NA
AXU77163.1|3834767_3835046_-	Mor transcription activator domain-containing protein	NA	NA	NA	NA	NA
AXU77164.1|3835354_3836116_-	iron-sulfur cluster-binding protein	NA	NA	NA	NA	NA
AXU77165.1|3836287_3838414_-	exosporium glycoprotein	NA	A0A285PXU9	Cedratvirus	67.1	1.6e-50
AXU77166.1|3838492_3839569_-	glycosyl transferase	NA	A0A1V0SAJ8	Catovirus	25.8	4.6e-17
AXU77167.1|3839880_3840465_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	51.8	2.1e-48
AXU77168.1|3840461_3840944_-	AraC family transcription regulator	NA	NA	NA	NA	NA
AXU77169.1|3841142_3842558_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AXU77170.1|3842672_3843341_+	B3/4 domain protein	NA	NA	NA	NA	NA
AXU77171.1|3843516_3844035_-	nitroreductase	NA	NA	NA	NA	NA
AXU77172.1|3844186_3844510_+	transcriptional regulator	NA	NA	NA	NA	NA
AXU77173.1|3844514_3845099_-|protease	protease	protease	NA	NA	NA	NA
