The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP012323	Clostridioides difficile strain DSM 28669 chromosome, complete genome	4137693	276837	288633	4137693		Synechococcus_phage(37.5%)	9	NA	NA
AXU63007.1|276837_277350_-	nitroreductase	NA	A0A1V0E011	Clostridioides_phage	87.6	7.8e-84
AXU63008.1|277799_278276_+	phosphoribosylaminoimidazole carboxylase catalytic subunit	NA	A0A2P0VNU7	Tetraselmis_virus	45.8	6.9e-26
AXU63009.1|278281_278980_+	phosphoribosylaminoimidazole-succinocarboxamide synthase	NA	A0A0E3F9V5	Synechococcus_phage	43.9	1.5e-45
AXU63010.1|278991_280359_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.0	2.6e-49
AXU63011.1|280352_281429_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	R9TMC7	Synechococcus_phage	42.2	1.7e-64
AXU63012.1|281422_282016_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.4	5.6e-25
AXU63013.1|282008_283541_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	E3SNU8	Prochlorococcus_phage	49.7	2.3e-38
AXU63014.1|283551_284802_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
AXU63015.1|284826_288633_+	formylglycinamidine ribonucleotide synthetase	NA	A6N228	Microbacterium_phage	24.0	8.9e-31
>prophage 2
CP012323	Clostridioides difficile strain DSM 28669 chromosome, complete genome	4137693	605680	649399	4137693	transposase,tRNA,coat	Streptococcus_phage(33.33%)	34	NA	NA
AXU63301.1|605680_607600_+|tRNA	threonyl-tRNA synthetase	tRNA	A0A2K9L297	Tupanvirus	39.9	1.3e-144
AXU63302.1|608365_609481_+|transposase	PD-(D/E)XK nuclease family transposase	transposase	NA	NA	NA	NA
AXU63303.1|609702_610740_-	hypothetical protein	NA	NA	NA	NA	NA
AXU63304.1|610732_611419_-	pentapeptide repeat-containing protein	NA	NA	NA	NA	NA
AXU63305.1|611430_611751_-	transcriptional regulator	NA	NA	NA	NA	NA
AXU63306.1|612111_613452_+	two-component sensor histidine kinase	NA	X5JAC0	Clostridium_phage	37.4	1.5e-73
AXU63307.1|613891_614461_-	putative HD superfamily hydrolase	NA	NA	NA	NA	NA
AXU63308.1|614621_615872_-	efflux protein	NA	NA	NA	NA	NA
AXU63309.1|615880_616114_-	hypothetical protein	NA	NA	NA	NA	NA
AXU63310.1|616164_616743_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AXU63311.1|617043_618504_+	NADP-dependent glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
AXU63312.1|618888_619494_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AXU63313.1|619496_622064_+	PEP-utilizing kinase	NA	A0A1V0SGR7	Hokovirus	39.2	4.6e-47
AXU63314.1|622323_624408_-	signaling protein	NA	NA	NA	NA	NA
AXU63315.1|624455_625685_-	signaling protein	NA	NA	NA	NA	NA
AXU63316.1|625686_626865_-	signaling protein	NA	G3MA91	Bacillus_virus	26.9	1.5e-08
AXU63317.1|627764_629204_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AXU63318.1|629516_629696_+	hypothetical protein	NA	NA	NA	NA	NA
AXU63319.1|630314_630590_+	hypothetical protein	NA	NA	NA	NA	NA
AXU63320.1|630609_630897_+	hypothetical protein	NA	NA	NA	NA	NA
AXU63321.1|631420_633916_+	hypothetical protein	NA	NA	NA	NA	NA
AXU63322.1|633930_639135_+	hypothetical protein	NA	NA	NA	NA	NA
AXU63323.1|639339_640206_-	cation transporting ATPase	NA	E4ZFI9	Streptococcus_phage	29.5	1.4e-29
AXU63324.1|640398_641154_-|transposase	transposase-like protein b	transposase	A0A0H3UZC2	Geobacillus_virus	56.2	1.5e-75
AXU63325.1|641132_641507_-|transposase	transposase-like protein B	transposase	S6AND0	Bacillus_phage	51.5	5.3e-21
AXU63326.1|642253_643414_-	cation transporting ATPase	NA	NA	NA	NA	NA
AXU63327.1|643456_643852_-	hypothetical protein	NA	NA	NA	NA	NA
AXU63328.1|644727_644916_+	hypothetical protein	NA	NA	NA	NA	NA
AXU63329.1|645097_645538_-	hypothetical protein	NA	NA	NA	NA	NA
AXU63330.1|645892_647206_+	putative phosphoadenosine phosphosulfate sulfotransferase	NA	A0A220GKF8	Streptococcus_phage	41.0	5.7e-94
AXU63331.1|647223_647760_+	ParB-like nuclease domain protein	NA	A0A220GKT8	Streptococcus_phage	69.7	1.2e-63
AXU63332.1|648280_648502_+|coat	Spore coat associated protein JA (CotJA)	coat	NA	NA	NA	NA
AXU63333.1|648501_648765_+|coat	spore-coat protein	coat	NA	NA	NA	NA
AXU63334.1|648826_649399_+|coat	spore-coat protein	coat	NA	NA	NA	NA
>prophage 3
CP012323	Clostridioides difficile strain DSM 28669 chromosome, complete genome	4137693	724184	787060	4137693	protease,transposase,integrase	Bacillus_phage(26.32%)	51	772221:772243	782421:782443
AXU63403.1|724184_725228_+|protease	serine protease	protease	NA	NA	NA	NA
AXU63404.1|725325_726045_+	antimicrobial peptide ABC transporter ATPase	NA	G9BWD6	Planktothrix_phage	34.1	1.0e-28
AXU63405.1|726178_728023_+	multidrug ABC transporter ATPase and permease	NA	W8CYL7	Bacillus_phage	25.9	8.6e-40
AXU63406.1|728789_729374_-|transposase	transposase	transposase	A0A1B1P773	Bacillus_phage	39.4	1.8e-31
AXU63407.1|730172_730907_+	metallo-beta-lactamase superfamily protein	NA	NA	NA	NA	NA
AXU63408.1|731890_733147_+	chloride ion channel protein	NA	A0A1X9I5Z9	Streptococcus_phage	51.8	2.4e-94
AXU63409.1|733209_734403_+	Na(+)/H(+) antiporter	NA	NA	NA	NA	NA
AXU63410.1|734604_734985_+	regulatory protein	NA	A0A0A8WHZ2	Clostridium_phage	64.2	4.1e-37
AXU63411.1|735290_735536_+	Pathogenicity locus	NA	NA	NA	NA	NA
AXU63412.1|735753_736023_-	hypothetical protein	NA	NA	NA	NA	NA
AXU63413.1|736701_737439_-	lantibiotic ABC transporter permease	NA	NA	NA	NA	NA
AXU63414.1|737450_738212_-	lantibiotic ABC transporter permease	NA	NA	NA	NA	NA
AXU63415.1|738211_739126_-	lantibiotic ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	44.2	1.3e-41
AXU63416.1|739296_740004_+	two-component response regulator	NA	W8CYM9	Bacillus_phage	36.4	4.2e-35
AXU63417.1|740048_741455_+	two-component sensor histidine kinase	NA	A0A1V0SGX0	Hokovirus	23.8	3.3e-07
AXU63418.1|742853_743243_+	regulatory protein	NA	A0A0A8WFF9	Clostridium_phage	47.2	2.1e-28
AXU63419.1|744004_744529_+	glyoxalase	NA	NA	NA	NA	NA
AXU63420.1|744848_745718_+	dinuclear metal center protein, YbgI/ family	NA	NA	NA	NA	NA
AXU63421.1|746449_747157_+	methyltransferase type 11	NA	NA	NA	NA	NA
AXU63422.1|747732_748233_+	acetyltransferase	NA	NA	NA	NA	NA
AXU63423.1|748440_749220_-	hypothetical protein	NA	NA	NA	NA	NA
AXU63424.1|749216_749696_-	RNA polymerase sigma factor	NA	NA	NA	NA	NA
AXU63425.1|750500_751202_+	hypothetical protein	NA	NA	NA	NA	NA
AXU63426.1|751227_751884_+	hypothetical protein	NA	NA	NA	NA	NA
AXU63427.1|752193_753834_+	amidohydrolase 3	NA	NA	NA	NA	NA
AXU63428.1|754190_755513_+	transcriptional regulator	NA	NA	NA	NA	NA
AXU63429.1|755709_756015_+	hypothetical protein	NA	NA	NA	NA	NA
AXU63430.1|756665_757775_+|transposase	transposase-like protein B	transposase	A0A0H3UZC2	Geobacillus_virus	53.0	6.2e-110
AXU63431.1|757925_758597_+	hypothetical protein	NA	NA	NA	NA	NA
AXU63432.1|758634_760032_+	putative ester cyclase	NA	NA	NA	NA	NA
AXU63433.1|760176_761442_+	transporter	NA	NA	NA	NA	NA
AXU63434.1|761459_763082_+	sodium:solute symporter	NA	A0A240F3J2	Aeromonas_phage	26.0	4.2e-22
AXU63435.1|763116_764139_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AXU63436.1|766065_767469_-	ATP-dependent peptidase	NA	H8ZJI5	Ostreococcus_tauri_virus	44.7	6.2e-99
AXU63437.1|768582_769008_+	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	37.9	2.3e-12
AXU63438.1|769035_769230_+	50S ribosomal protein L35	NA	NA	NA	NA	NA
AXU63439.1|769284_769641_+	50S ribosomal protein L20	NA	NA	NA	NA	NA
AXU63440.1|769950_770496_+	hypothetical protein	NA	NA	NA	NA	NA
AXU63441.1|770932_772858_+	nucleotide phosphodiesterase	NA	NA	NA	NA	NA
772221:772243	attL	TTGGGAATCATGAATTTGTATCT	NA	NA	NA	NA
AXU63442.1|772973_773408_-|integrase	integrase	integrase	A0A1S5SEW7	Streptococcus_phage	51.6	3.6e-13
AXU63443.1|775258_775606_-	hypothetical protein	NA	NA	NA	NA	NA
AXU63444.1|775645_776422_-	lantibiotic ABC transporter permease	NA	NA	NA	NA	NA
AXU63445.1|776423_777227_-	lantibiotic ABC transporter permease	NA	NA	NA	NA	NA
AXU63446.1|777219_778143_-	lantibiotic ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	44.2	4.6e-42
AXU63447.1|778320_779016_+	two-component response regulator	NA	W8CYM9	Bacillus_phage	41.6	2.6e-37
AXU63448.1|779012_780374_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
AXU63449.1|780465_780735_+	transposon-related DNA-binding protein	NA	A0A1S5SFA6	Streptococcus_phage	41.9	6.7e-10
AXU63450.1|782059_783964_+	nucleotide phosphodiesterase	NA	NA	NA	NA	NA
782421:782443	attR	TTGGGAATCATGAATTTGTATCT	NA	NA	NA	NA
AXU63451.1|784470_785250_+	short chain dehydrogenase	NA	NA	NA	NA	NA
AXU63452.1|785984_786227_-|transposase	transposase-like protein b	transposase	A0A0H3UZC2	Geobacillus_virus	63.8	4.9e-28
AXU63453.1|786232_787060_-|transposase	transposase-like protein B	transposase	S6AND0	Bacillus_phage	50.6	9.1e-66
>prophage 4
CP012323	Clostridioides difficile strain DSM 28669 chromosome, complete genome	4137693	1435472	1459914	4137693	tail	Clostridium_phage(54.55%)	29	NA	NA
AXU64026.1|1435472_1435673_+	cold shock protein	NA	A0A1W6JNX5	Morganella_phage	66.2	2.7e-16
AXU64027.1|1436093_1436522_+	regulatory protein	NA	NA	NA	NA	NA
AXU64028.1|1436664_1437420_-	peptidyl-prolyl isomerase	NA	NA	NA	NA	NA
AXU64029.1|1437540_1437957_-	hypothetical protein	NA	NA	NA	NA	NA
AXU64030.1|1438120_1438627_-	phage protein	NA	A0A0A8WEK1	Clostridium_phage	67.1	4.0e-56
AXU64031.1|1438708_1439029_-	phage repressor	NA	A0A0A8WE28	Clostridium_phage	54.5	3.7e-23
AXU64032.1|1439197_1439395_+	phage regulatory protein	NA	NA	NA	NA	NA
AXU64033.1|1439499_1439940_+	DNA-binding protein	NA	A0A090EUN5	Clostridium_phage	50.7	1.3e-31
AXU64034.1|1440188_1440632_+	hypothetical protein	NA	A0A1V0DZX9	Clostridioides_phage	36.7	2.0e-19
AXU64035.1|1440636_1441701_+	phage-like element pbsx protein xkdK	NA	A0A1V0DZX4	Clostridioides_phage	52.8	2.6e-97
AXU64036.1|1441714_1442143_+	phage-like element pbsx protein XkdM	NA	A0A1V0DZX1	Clostridioides_phage	51.8	2.8e-34
AXU64037.1|1442256_1442703_+	Phage XkdN-like protein	NA	A0A090EUD0	Clostridium_phage	36.0	8.2e-13
AXU64038.1|1442729_1442897_+	hypothetical protein	NA	NA	NA	NA	NA
AXU64039.1|1442896_1445350_+	phage protein	NA	A0A1V0DZX3	Clostridioides_phage	58.4	6.1e-17
AXU64040.1|1445349_1445772_+	phage-like element pbsx protein xkdP	NA	A0A090DBR9	Clostridium_phage	71.1	1.7e-52
AXU64041.1|1446053_1447586_+	phage cell wall hydrolase	NA	A0A1V0DZX6	Clostridioides_phage	79.7	1.8e-237
AXU64042.1|1447601_1447928_+	hypothetical protein	NA	J9QE86	Clostridium_phage	94.4	2.3e-52
AXU64043.1|1447927_1448356_+	phage protein	NA	A0A0A8WJ32	Clostridium_phage	82.4	5.8e-64
AXU64044.1|1448348_1449401_+	phage protein	NA	A0A0A8WFP3	Clostridium_phage	70.1	3.0e-138
AXU64045.1|1449397_1450096_+	phage protein	NA	A0A090D815	Clostridium_phage	56.9	5.5e-48
AXU64046.1|1450096_1451083_+|tail	phage tail fiber protein	tail	A0A2H4J039	uncultured_Caudovirales_phage	45.8	4.4e-59
AXU64047.1|1451104_1456336_+	RCC1 domain-containing protein, alpha-tubulin suppressor	NA	A0A0A8WEY5	Clostridium_phage	31.3	4.4e-81
AXU64048.1|1456352_1456706_+	hypothetical protein	NA	A0A0A8WJF2	Clostridium_phage	42.1	5.5e-12
AXU64049.1|1456968_1457229_+	hypothetical protein	NA	E2ELK7	Clostridium_phage	90.6	9.9e-35
AXU64050.1|1457447_1457903_-	hypothetical protein	NA	NA	NA	NA	NA
AXU64051.1|1458130_1458550_-	phage regulatory protein	NA	S5MUV6	Brevibacillus_phage	37.2	5.4e-06
AXU64052.1|1458848_1459058_+	phage regulatory protein	NA	Q5YAA3	Bacillus_phage	46.2	1.3e-05
AXU64053.1|1459089_1459299_+	hypothetical protein	NA	NA	NA	NA	NA
AXU64054.1|1459515_1459914_-	phage regulatory protein	NA	A0A1L2JY18	Aeribacillus_phage	29.7	2.7e-07
>prophage 5
CP012323	Clostridioides difficile strain DSM 28669 chromosome, complete genome	4137693	1541500	1551229	4137693		Pandoravirus(37.5%)	11	NA	NA
AXU64124.1|1541500_1542085_+	para-aminobenzoate synthase glutamine amidotransferase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	53.7	1.7e-58
AXU64125.1|1542086_1543436_+	para-aminobenzoate synthase component I	NA	S4VNU7	Pandoravirus	41.2	2.9e-37
AXU64126.1|1543425_1544169_+	aminodeoxychorismate lyase	NA	NA	NA	NA	NA
AXU64127.1|1544202_1544904_+	hypothetical protein	NA	NA	NA	NA	NA
AXU64128.1|1544929_1545502_+	GTP cyclohydrolase I	NA	E7DN69	Pneumococcus_phage	51.6	3.0e-44
AXU64129.1|1545567_1546359_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	30.0	9.8e-25
AXU64130.1|1546369_1546735_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
AXU64131.1|1546727_1547234_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase	NA	S4VNV0	Pandoravirus	36.6	2.5e-13
AXU64132.1|1547214_1548000_+	chorismate biosynthesis-like protein	NA	E3T537	Cafeteria_roenbergensis_virus	27.9	1.7e-13
AXU64133.1|1548254_1550045_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	32.6	1.2e-51
AXU64134.1|1550062_1551229_+	RNA polymerase sigma factor (sigma-43)	NA	M4SMP8	Cyanophage	36.8	9.6e-37
>prophage 6
CP012323	Clostridioides difficile strain DSM 28669 chromosome, complete genome	4137693	1676892	1731143	4137693	portal,tail,terminase,capsid,head	Clostridium_phage(93.55%)	74	NA	NA
AXU64244.1|1676892_1678587_+	acetolactate synthase large subunit	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	29.1	1.7e-50
AXU64245.1|1678944_1680075_-	prophage lambdaba04, site-specific recombinase	NA	A0A0A8WIE1	Clostridium_phage	98.9	2.5e-215
AXU64246.1|1680313_1680820_-	putative Zn peptidase	NA	A0A0A8WEK1	Clostridium_phage	100.0	1.5e-87
AXU64247.1|1680895_1681444_-	phage regulatory protein	NA	A0A0A8WJ60	Clostridium_phage	98.4	2.2e-92
AXU64248.1|1681455_1682067_-	phage repressor	NA	A0A0A8WFJ2	Clostridium_phage	76.3	7.5e-25
AXU64249.1|1682209_1682443_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AXU64250.1|1682647_1682827_-	Mnt	NA	A0A0A8WG21	Clostridium_phage	70.9	1.9e-13
AXU64251.1|1682903_1683041_+	hypothetical protein	NA	A0A0A8WFX8	Clostridium_phage	95.6	8.3e-17
AXU64252.1|1683026_1683338_-	Ribbon-helix-helix protein, copG family	NA	A0A0A8WJU4	Clostridium_phage	97.1	4.6e-47
AXU64253.1|1683459_1683630_+	hypothetical protein	NA	A0A0A8WFG5	Clostridium_phage	87.5	6.9e-21
AXU64254.1|1683632_1684436_+	phage antirepressor protein	NA	A0A0A8WIE3	Clostridium_phage	96.2	6.3e-80
AXU64255.1|1684482_1684692_+	hypothetical protein	NA	NA	NA	NA	NA
AXU64256.1|1684850_1685048_+	phage regulatory protein	NA	A0A0A8WE47	Clostridium_phage	90.8	1.4e-25
AXU64257.1|1685078_1685471_+	Helix-turn-helix domain protein	NA	A0A0A8WHS2	Clostridium_phage	93.8	1.9e-58
AXU64258.1|1685451_1685601_+	hypothetical protein	NA	A0A0A8WIF8	Clostridium_phage	89.4	4.2e-14
AXU64259.1|1685671_1686109_+	hypothetical protein	NA	NA	NA	NA	NA
AXU64260.1|1686120_1687287_+	phage-like protein	NA	S5MUB5	Brevibacillus_phage	55.9	8.5e-118
AXU64261.1|1687302_1687638_+	hypothetical protein	NA	NA	NA	NA	NA
AXU64262.1|1687690_1688263_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
AXU64263.1|1688285_1688858_+	phage-like protein	NA	S5MC21	Brevibacillus_phage	66.7	8.5e-63
AXU64264.1|1688857_1690816_+	dna-directed dna polymerase i	NA	A0A0A7RTL3	Clostridium_phage	68.4	1.4e-261
AXU64265.1|1690827_1693245_+	virulence-associated protein e	NA	A0A0A7RTG3	Clostridium_phage	67.8	0.0e+00
AXU64266.1|1693210_1693354_+	hypothetical protein	NA	NA	NA	NA	NA
AXU64267.1|1693526_1693853_+	VRR-NUC domain-containing protein	NA	A0A0A7RTE1	Clostridium_phage	51.7	8.4e-15
AXU64268.1|1695325_1695805_+	sigma-70 region 4 type 2	NA	I2E8Y5	Clostridium_phage	51.6	3.3e-36
AXU64269.1|1696329_1696527_+	hypothetical protein	NA	A0A0A8WJQ8	Clostridium_phage	95.4	2.8e-29
AXU64270.1|1696829_1697804_+	hypothetical protein	NA	NA	NA	NA	NA
AXU64271.1|1697824_1698334_+	hypothetical protein	NA	NA	NA	NA	NA
AXU64272.1|1698404_1699097_+	phage DNA-binding protein	NA	A0A0A8WFS6	Clostridium_phage	98.7	3.4e-122
AXU64273.1|1699074_1700328_+|terminase	phage terminase large subunit	terminase	A0A0A8WFI5	Clostridium_phage	99.5	1.0e-246
AXU64274.1|1700333_1701773_+|portal	phage portal protein	portal	A0A0A8WIH2	Clostridium_phage	98.7	1.0e-277
AXU64275.1|1701762_1703160_+|head	phage minor head protein	head	A0A0A8WJ84	Clostridium_phage	96.8	1.8e-263
AXU64276.1|1703174_1703375_+	hypothetical protein	NA	A0A0A8WJ56	Clostridium_phage	100.0	2.3e-31
AXU64277.1|1703440_1704004_+	phage scaffold protein	NA	A0A0A8WFU8	Clostridium_phage	99.5	6.4e-87
AXU64278.1|1704015_1704915_+|capsid	phage major capsid protein	capsid	A0A0A8WFI8	Clostridium_phage	99.3	1.1e-168
AXU64279.1|1704914_1705148_+	hypothetical protein	NA	A0A0A8WFD0	Clostridium_phage	96.1	5.4e-32
AXU64280.1|1705157_1705559_+	hypothetical protein	NA	X5JAJ0	Clostridium_phage	97.0	4.7e-68
AXU64281.1|1705552_1705900_+	phage protein	NA	X5JAV9	Clostridium_phage	98.3	1.6e-56
AXU64282.1|1705899_1706325_+	phage protein	NA	X5JB35	Clostridium_phage	98.6	1.9e-75
AXU64283.1|1706317_1706755_+	phage protein	NA	X5JAB5	Clostridium_phage	92.4	2.8e-74
AXU64284.1|1706738_1706924_+	hypothetical protein	NA	X5J9Z6	Clostridium_phage	87.9	6.4e-20
AXU64285.1|1706924_1708235_+	phage protein	NA	X5JAJ1	Clostridium_phage	93.6	2.1e-234
AXU64286.1|1708251_1708722_+	phage protein	NA	A0A0A8WJ62	Clostridium_phage	82.1	7.0e-71
AXU64287.1|1708793_1709234_+	phage protein	NA	X5JAB6	Clostridium_phage	63.7	8.6e-47
AXU64288.1|1710076_1710181_+	hypothetical protein	NA	A0A090D809	Clostridium_phage	73.5	1.9e-05
AXU64289.1|1711662_1711752_+	hypothetical protein	NA	NA	NA	NA	NA
AXU64290.1|1711758_1712061_+	hypothetical protein	NA	NA	NA	NA	NA
AXU64291.1|1712217_1712388_+	Ribbon-helix-helix protein, copG family	NA	NA	NA	NA	NA
AXU64292.1|1712515_1713358_+	prophage antirepressor-related protein	NA	X5JAW1	Clostridium_phage	71.4	1.4e-82
AXU64293.1|1713410_1713569_+	hypothetical protein	NA	NA	NA	NA	NA
AXU64294.1|1714126_1714909_+	hypothetical protein	NA	X5JB37	Clostridium_phage	48.5	3.6e-48
AXU64295.1|1714972_1717324_+|tail	phage tail tape measure protein	tail	X5JAB7	Clostridium_phage	58.6	5.2e-231
AXU64296.1|1717339_1718035_+	phage cell wall hydrolase	NA	X5J9Z8	Clostridium_phage	90.5	5.4e-112
AXU64297.1|1718027_1719920_+	phage cell wall hydrolase	NA	A3QSB3	Clostridium_virus	82.1	7.2e-308
AXU64298.1|1719933_1720194_+	phage protein	NA	A0A0A8WJ65	Clostridium_phage	90.7	1.2e-35
AXU64299.1|1720198_1720618_+	phage protein	NA	X5JB38	Clostridium_phage	93.5	6.4e-68
AXU64300.1|1720618_1721668_+	phage protein	NA	A0A0A8WFK0	Clostridium_phage	94.6	1.7e-186
AXU64301.1|1721660_1722278_+	phage protein	NA	A0A0A8WII4	Clostridium_phage	97.6	3.3e-113
AXU64302.1|1722289_1723399_+|tail	phage tail fiber protein	tail	A0A0A8WJ95	Clostridium_phage	99.2	4.8e-179
AXU64303.1|1723415_1724561_+	streptogramin lyase	NA	E2ELJ9	Clostridium_phage	84.5	1.8e-184
AXU64304.1|1724753_1725884_+	Ig domain-containing protein	NA	E2ELJ9	Clostridium_phage	35.0	9.6e-50
AXU64305.1|1725901_1726267_+	hypothetical protein	NA	E2ELK0	Clostridium_phage	96.7	7.1e-55
AXU64306.1|1726268_1726403_+	phage protein, XkdX family	NA	E2ELK1	Clostridium_phage	97.7	1.1e-16
AXU64307.1|1726614_1727226_+|tail	tail fiber protein	tail	E2ELK5	Clostridium_phage	76.8	3.1e-87
AXU64308.1|1727237_1727543_+	hypothetical protein	NA	E2ELK6	Clostridium_phage	96.0	3.2e-48
AXU64309.1|1727542_1727725_+	hypothetical protein	NA	A0A0A8WJT8	Clostridium_phage	94.9	1.9e-24
AXU64310.1|1727758_1728322_+	hypothetical protein	NA	A0A0A8WFF2	Clostridium_phage	59.9	1.5e-35
AXU64311.1|1728373_1728604_+	Hemolysin XhlA	NA	Q24LG5	Clostridium_phage	100.0	9.7e-34
AXU64312.1|1728619_1728880_+	phage membrane protein	NA	A0A0A8WJ67	Clostridium_phage	91.8	3.0e-39
AXU64313.1|1728876_1729683_+	phage-related cell wall hydrolase	NA	A0A0A8WE15	Clostridium_phage	97.0	3.3e-153
AXU64314.1|1729727_1729904_-	putative PemI	NA	A0A0A8WHQ4	Clostridium_phage	96.6	6.9e-24
AXU64315.1|1730148_1730277_-	hypothetical protein	NA	A0A0A8WIC8	Clostridium_phage	76.2	5.0e-08
AXU64316.1|1730600_1730777_-	putative PemI	NA	A0A0A8WHQ4	Clostridium_phage	62.1	4.2e-13
AXU64317.1|1731014_1731143_-	hypothetical protein	NA	A0A0A8WEJ5	Clostridium_phage	92.9	2.9e-11
>prophage 7
CP012323	Clostridioides difficile strain DSM 28669 chromosome, complete genome	4137693	2063178	2070422	4137693	transposase	Clostridium_phage(50.0%)	8	NA	NA
AXU64625.1|2063178_2063967_-	phage-related cell wall hydrolase	NA	A0A0A8WE15	Clostridium_phage	62.3	1.1e-89
AXU64626.1|2064105_2064543_-	phage-related deoxycytidylate deaminase	NA	A7KUY9	Bacillus_phage	54.3	5.9e-32
AXU64627.1|2064777_2064912_-	hypothetical protein	NA	B6SBZ7	Clostridium_virus	78.0	6.2e-09
AXU64628.1|2065380_2065680_+|transposase	transposase	transposase	A0A0A8WJI7	Clostridium_phage	94.2	2.7e-20
AXU64629.1|2065956_2066466_+	phage repressor	NA	A0A2H4J6F9	uncultured_Caudovirales_phage	43.8	1.0e-06
AXU64630.1|2066855_2067392_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
AXU64631.1|2067828_2068629_-	ABC transporter permease	NA	NA	NA	NA	NA
AXU64632.1|2068823_2070422_-	site-specific recombinase	NA	A0A1L2BY67	Clostridium_phage	44.2	2.3e-113
>prophage 8
CP012323	Clostridioides difficile strain DSM 28669 chromosome, complete genome	4137693	2435777	2510518	4137693	protease,tail,tRNA,holin	Clostridium_phage(35.29%)	60	NA	NA
AXU64963.1|2435777_2437175_-|tRNA	asparaginyl-tRNA synthetase	tRNA	M1PB22	Moumouvirus	39.8	4.9e-88
AXU64964.1|2437653_2437848_-	hypothetical protein	NA	NA	NA	NA	NA
AXU64965.1|2438121_2439795_-|protease	germination-specific protease	protease	NA	NA	NA	NA
AXU64966.1|2439804_2443155_-|protease	germination-specific protease	protease	A0A127AWU5	Bacillus_phage	32.3	2.5e-05
AXU64967.1|2443369_2444566_-	VWA domain containing CoxE-like protein	NA	NA	NA	NA	NA
AXU64968.1|2444586_2445408_-	ATPase	NA	NA	NA	NA	NA
AXU64969.1|2445871_2446966_+	permease	NA	NA	NA	NA	NA
AXU64970.1|2447116_2447473_+	hypothetical protein	NA	NA	NA	NA	NA
AXU64971.1|2447565_2448834_-	L-lysine 2,3-aminomutase	NA	NA	NA	NA	NA
AXU64972.1|2449235_2450618_-	GntR family transcriptional regulator	NA	A0A1X9I5H2	Streptococcus_phage	24.9	2.7e-14
AXU64973.1|2450742_2451429_+	amino acid recemase	NA	NA	NA	NA	NA
AXU64974.1|2451614_2453150_-	hypothetical protein	NA	NA	NA	NA	NA
AXU64975.1|2453424_2454474_+	PTS system transporter subunit EIIC	NA	NA	NA	NA	NA
AXU64976.1|2454522_2455557_-	hypothetical protein	NA	NA	NA	NA	NA
AXU64977.1|2455574_2455922_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
AXU64978.1|2456179_2457562_+	proton-dependent oligopeptide transporter	NA	NA	NA	NA	NA
AXU64979.1|2457642_2459436_-	peptidase	NA	A0A0P0I8D7	Acinetobacter_phage	39.4	1.1e-127
AXU64980.1|2459688_2461080_-	proton-dependent oligopeptide transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.4	1.7e-56
AXU64981.1|2461535_2462678_-	protein export chaperone	NA	NA	NA	NA	NA
AXU64982.1|2462788_2463832_-	hypothetical protein	NA	NA	NA	NA	NA
AXU64983.1|2464353_2464911_-	membrane-spanning protein	NA	NA	NA	NA	NA
AXU64984.1|2464938_2466465_-	oxidoreductase	NA	NA	NA	NA	NA
AXU64985.1|2466844_2467807_-|protease	membrane-associated caaX amino terminal protease	protease	NA	NA	NA	NA
AXU64986.1|2468347_2470267_-	PTS system transporter subunit IIBC	NA	NA	NA	NA	NA
AXU64987.1|2470303_2471221_-	1-phosphofructokinase	NA	NA	NA	NA	NA
AXU64988.1|2471387_2473166_-	transcription antiterminator	NA	NA	NA	NA	NA
AXU64989.1|2473177_2473918_-	protein tyrosine/serine phosphatase	NA	NA	NA	NA	NA
AXU64990.1|2474191_2475253_+	membrane protein	NA	NA	NA	NA	NA
AXU64991.1|2475406_2476660_-	hypothetical protein	NA	NA	NA	NA	NA
AXU64992.1|2476763_2478884_-	DNA topoisomerase III	NA	A0A1V0SCS0	Indivirus	27.2	2.8e-26
AXU64993.1|2479588_2480956_+	sodium:solute symporter	NA	NA	NA	NA	NA
AXU64994.1|2481128_2481776_-	sugar phosphate aldolase	NA	NA	NA	NA	NA
AXU64995.1|2481793_2482480_-	L-ribulose-5-phosphate 4-epimerase	NA	NA	NA	NA	NA
AXU64996.1|2482581_2483640_-	sugar dehydrogenase	NA	A0A2K9L7I1	Tupanvirus	28.6	2.4e-18
AXU64997.1|2483983_2485390_-	PTS system transporter subunit IIC	NA	NA	NA	NA	NA
AXU64998.1|2485570_2485873_-	PTS system transporter subunit IIB	NA	NA	NA	NA	NA
AXU64999.1|2485995_2486442_-	PTS system transporter subunit IIBC	NA	NA	NA	NA	NA
AXU65000.1|2486474_2489378_-	sigma-54 interacting transcription antiterminator	NA	NA	NA	NA	NA
AXU65001.1|2489855_2490278_+	hypothetical protein	NA	NA	NA	NA	NA
AXU65002.1|2490724_2492110_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AXU65003.1|2492387_2493089_+	branched amino acid transport protein	NA	NA	NA	NA	NA
AXU65004.1|2493081_2493405_+	branched-chain amino acid transport	NA	NA	NA	NA	NA
AXU65005.1|2493610_2495680_-	two-component sensor histidine kinase	NA	W8CYF6	Bacillus_phage	25.5	4.4e-16
AXU65006.1|2495875_2496568_-	two-component system response regulator	NA	W8CYM9	Bacillus_phage	33.6	2.4e-35
AXU65007.1|2497057_2497432_-	regulatory protein	NA	A0A0A8WFF9	Clostridium_phage	93.5	2.0e-57
AXU65008.1|2497650_2497884_+	transcriptional regulator	NA	NA	NA	NA	NA
AXU65009.1|2497867_2498281_+	hypothetical protein	NA	NA	NA	NA	NA
AXU65010.1|2498299_2498500_+	hypothetical protein	NA	NA	NA	NA	NA
AXU65011.1|2498914_2499901_+|protease	membrane-associated caaX amino terminal protease	protease	NA	NA	NA	NA
AXU65012.1|2499929_2500247_+	hypothetical protein	NA	NA	NA	NA	NA
AXU65013.1|2500454_2501270_-	arylesterase, non-heme chloride peroxidase	NA	NA	NA	NA	NA
AXU65014.1|2501489_2502236_-	phage-related cell wall hydrolase	NA	A0A0A8WHU0	Clostridium_phage	67.5	3.9e-84
AXU65015.1|2502400_2502493_-|holin	holin	holin	A0A0A8WF70	Clostridium_phage	83.3	9.8e-06
AXU65016.1|2502800_2504348_-	Glycine rich protein	NA	B6SBV0	Clostridium_virus	75.5	1.0e-179
AXU65017.1|2504744_2504957_-	hypothetical protein	NA	J9QEB9	Clostridium_phage	80.0	7.6e-25
AXU65018.1|2504970_2506464_-	hypothetical protein	NA	J9QE87	Clostridium_phage	55.7	5.4e-109
AXU65019.1|2506479_2506764_-|tail	phage tail fiber protein	tail	NA	NA	NA	NA
AXU65020.1|2506751_2508176_-	phage protein	NA	A0A0A8WFK0	Clostridium_phage	83.9	1.0e-157
AXU65021.1|2508436_2508871_+	hypothetical protein	NA	NA	NA	NA	NA
AXU65022.1|2508958_2510518_-	cell surface protein	NA	A0A2R2ZGK6	Clostridioides_phage	52.0	1.9e-72
>prophage 9
CP012323	Clostridioides difficile strain DSM 28669 chromosome, complete genome	4137693	2758927	2767720	4137693	holin,integrase	Clostridium_phage(66.67%)	11	2766205:2766220	2768338:2768353
AXU65247.1|2758927_2759311_-	regulatory protein	NA	A0A090DCS9	Clostridium_phage	89.0	2.6e-60
AXU65248.1|2759694_2759871_+	hypothetical protein	NA	NA	NA	NA	NA
AXU65249.1|2760096_2760297_+	cold shock protein	NA	A0A1X9IGI9	Lactococcus_phage	68.3	5.0e-18
AXU65250.1|2760742_2762065_+	two-component sensor histidine kinase	NA	X5JAC0	Clostridium_phage	59.4	4.6e-136
AXU65251.1|2762107_2762689_+	accessory gene regulator protein	NA	X5JB40	Clostridium_phage	49.2	1.0e-42
AXU65252.1|2762706_2762868_+	autoinducer prepeptide	NA	NA	NA	NA	NA
AXU65253.1|2762889_2763687_-	phage-related cell wall hydrolase	NA	A0A0A8WE15	Clostridium_phage	90.7	1.1e-140
AXU65254.1|2763683_2763944_-|holin	holin	holin	A3QSC5	Clostridium_virus	77.6	7.9e-32
AXU65255.1|2765012_2765171_-	hypothetical protein	NA	J9QED5	Clostridium_phage	63.5	1.6e-08
AXU65256.1|2765528_2766899_-	cell surface protein	NA	A0A2R2ZGK6	Clostridioides_phage	43.7	7.8e-70
2766205:2766220	attL	TTTACTATTTTTTTAT	NA	NA	NA	NA
AXU65257.1|2767297_2767720_+|integrase	integrase	integrase	X5JB41	Clostridium_phage	69.1	1.4e-46
AXU65257.1|2767297_2767720_+|integrase	integrase	integrase	X5JB41	Clostridium_phage	69.1	1.4e-46
2768338:2768353	attR	TTTACTATTTTTTTAT	NA	NA	NA	NA
>prophage 10
CP012323	Clostridioides difficile strain DSM 28669 chromosome, complete genome	4137693	3075971	3084924	4137693		Catovirus(50.0%)	8	NA	NA
AXU65511.1|3075971_3077885_-	capsular polysaccharide biosynthesis protein	NA	A0A1V0SAI8	Catovirus	29.8	1.1e-26
AXU65512.1|3077968_3079060_-	capsular polysaccharide biosynthesis glycosyl transferase	NA	A0A1V0SL50	Klosneuvirus	26.2	2.3e-16
AXU65513.1|3079065_3080361_-	UDP-glucose 6-dehydrogenase	NA	A0A127AXI2	Bacillus_phage	43.6	2.2e-90
AXU65514.1|3080386_3081139_-	teichuronic acid biosynthesis glycosyl transferase	NA	A0A1V0SAH6	Catovirus	40.5	4.6e-16
AXU65515.1|3081186_3082095_-	beta-glycosyltransferase	NA	NA	NA	NA	NA
AXU65516.1|3082116_3082866_-	teichuronic acid biosynthesis glycosyl transferase	NA	A0A1V0SAH6	Catovirus	38.8	1.2e-16
AXU65517.1|3082894_3084070_-	minor teichoic acid biosynthesis protein	NA	NA	NA	NA	NA
AXU65518.1|3084084_3084924_-	glycosyl transferase	NA	A0A2P1ELT8	Moumouvirus	26.3	7.0e-05
>prophage 11
CP012323	Clostridioides difficile strain DSM 28669 chromosome, complete genome	4137693	3574729	3596018	4137693	integrase	Streptococcus_phage(88.89%)	27	3569075:3569090	3595679:3595694
3569075:3569090	attL	CATCTAAAAATATACT	NA	NA	NA	NA
AXU65906.1|3574729_3575056_+	conjugative transposon protein	NA	A0A1S5SF38	Streptococcus_phage	52.4	1.5e-24
AXU65907.1|3575071_3575455_+	conjugative transposon protein	NA	A0A1S5SF96	Streptococcus_phage	55.9	2.3e-32
AXU65908.1|3575571_3576213_+	hypothetical protein	NA	NA	NA	NA	NA
AXU65909.1|3576216_3576420_+	transcriptional regulator	NA	A0A1V0E021	Clostridioides_phage	45.8	7.5e-06
AXU65910.1|3576488_3577883_+	conjugative transposon FtsK/SpoIIIE-like protein	NA	A0A1S5SFB5	Streptococcus_phage	65.7	3.3e-177
AXU65911.1|3578066_3579263_+	conjugative transposon replication initiation factor	NA	A0A1S5SEX3	Streptococcus_phage	62.3	4.7e-148
AXU65912.1|3579275_3579410_+	conjugative transposon protein	NA	NA	NA	NA	NA
AXU65913.1|3579410_3579632_+	conjugative transposon protein	NA	A0A1S5SEY0	Streptococcus_phage	87.7	9.0e-29
AXU65914.1|3579721_3580342_+	hypothetical protein	NA	NA	NA	NA	NA
AXU65915.1|3580666_3581170_+	conjugative tansposon protein	NA	NA	NA	NA	NA
AXU65916.1|3581187_3581691_+	conjugative transposon protein	NA	A0A1S5SF25	Streptococcus_phage	60.8	7.5e-55
AXU65917.1|3581807_3582206_+	conjugative transposon protein	NA	A0A1S5SEX7	Streptococcus_phage	73.0	4.1e-48
AXU65918.1|3582183_3584634_+	conjugative transposon protein	NA	A0A1S5SF64	Streptococcus_phage	76.4	0.0e+00
AXU65919.1|3584633_3586838_+	conjugative transposon protein	NA	A0A1S5SF30	Streptococcus_phage	51.1	1.6e-181
AXU65920.1|3586834_3587842_+	cell wall hydrolase	NA	A0A1S5SEZ8	Streptococcus_phage	67.6	6.4e-130
AXU65921.1|3587859_3588771_+	conjugative transposon protein	NA	A0A1S5SF22	Streptococcus_phage	53.6	2.2e-84
AXU65922.1|3588871_3589075_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AXU65923.1|3589071_3589488_+	hypothetical protein	NA	NA	NA	NA	NA
AXU65924.1|3590095_3590833_-	rRNA adenine N-6-methyltransferase	NA	E4ZFQ0	Streptococcus_phage	99.2	7.0e-134
AXU65925.1|3591061_3591325_-	plasmid protein	NA	A0A1X9I6D5	Streptococcus_phage	83.1	4.4e-22
AXU65926.1|3591709_3592135_+	hypothetical protein	NA	NA	NA	NA	NA
AXU65927.1|3592166_3592391_+	hypothetical protein	NA	NA	NA	NA	NA
AXU65928.1|3592418_3593099_+	conjugative transposon protein	NA	A0A1S5SEW0	Streptococcus_phage	43.1	3.9e-22
AXU65929.1|3593091_3593331_+	conjugative transposon excisionase	NA	NA	NA	NA	NA
AXU65930.1|3593705_3593909_+	excisionase	NA	A0A1S5SF07	Streptococcus_phage	82.1	2.5e-25
AXU65931.1|3593908_3595177_+|integrase	integrase	integrase	A0A1S5SEW7	Streptococcus_phage	67.3	1.5e-155
AXU65932.1|3595382_3596018_-	single-stranded DNA-binding protein	NA	A0A2H4J8K3	uncultured_Caudovirales_phage	52.9	1.6e-54
3595679:3595694	attR	CATCTAAAAATATACT	NA	NA	NA	NA
>prophage 12
CP012323	Clostridioides difficile strain DSM 28669 chromosome, complete genome	4137693	3615745	3727773	4137693	protease,portal,integrase,tail,terminase,tRNA,capsid,head	Clostridium_phage(78.05%)	132	3612458:3612479	3727270:3727291
3612458:3612479	attL	ATTAGAAAAAATTAAAATGGAT	NA	NA	NA	NA
AXU65951.1|3615745_3616759_-|protease	serine protease	protease	NA	NA	NA	NA
AXU65952.1|3617823_3618534_-	two-component response regulator	NA	A0A2R2ZGH8	Clostridioides_phage	36.9	1.5e-37
AXU65953.1|3618958_3621625_-|tRNA	valyl-tRNA synthetase	tRNA	A0A1V0SK04	Klosneuvirus	43.0	1.0e-174
AXU65954.1|3622264_3623092_-	polysaccharide deacetylase	NA	NA	NA	NA	NA
AXU65955.1|3623139_3624576_-	iron-only hydrogenase	NA	NA	NA	NA	NA
AXU65956.1|3624662_3625532_-	putative membrane protein	NA	NA	NA	NA	NA
AXU65957.1|3625690_3626344_-	phosphate transport system protein	NA	NA	NA	NA	NA
AXU65958.1|3626371_3627136_-	phosphate transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	33.5	1.5e-14
AXU65959.1|3627154_3627979_-	phosphate ABC transporter permease	NA	NA	NA	NA	NA
AXU65960.1|3627980_3628898_-	phosphate ABC transporter permease	NA	NA	NA	NA	NA
AXU65961.1|3628881_3628974_-	hypothetical protein	NA	NA	NA	NA	NA
AXU65962.1|3629279_3630515_-	membrane protein	NA	NA	NA	NA	NA
AXU65963.1|3630515_3631478_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	32.4	5.5e-22
AXU65964.1|3631547_3632663_-	sensor protein	NA	W8CYF6	Bacillus_phage	29.0	6.6e-19
AXU65965.1|3632698_3633397_-	two component transcriptional regulator, winged helix family	NA	W8CYM9	Bacillus_phage	39.0	1.5e-37
AXU65966.1|3633984_3634371_-	phage regulatory protein	NA	X5JAW5	Clostridium_phage	100.0	1.5e-66
AXU65967.1|3634410_3634692_-	phage regulatory protein	NA	Q24LF7	Clostridium_phage	97.8	1.8e-42
AXU65968.1|3635554_3635731_-	hypothetical protein	NA	NA	NA	NA	NA
AXU65969.1|3635986_3636175_+	phage-related DNA-directed RNA polymerase 7 kDa polypeptide	NA	X5JA01	Clostridium_phage	100.0	1.8e-30
AXU65970.1|3636547_3636676_-	hypothetical protein	NA	NA	NA	NA	NA
AXU65971.1|3636769_3637798_-	hypothetical protein	NA	NA	NA	NA	NA
AXU65972.1|3638210_3639017_-	phage-related cell wall hydrolase	NA	A0A0A8WIC2	Clostridium_phage	92.2	8.1e-144
AXU65973.1|3639016_3639274_-	phage membrane protein	NA	A0A0K2SUI8	Clostridium_phage	98.8	7.0e-41
AXU65974.1|3639293_3639524_-	Hemolysin XhlA	NA	A0A0A8WJM3	Clostridium_phage	51.3	5.9e-15
AXU65975.1|3639564_3639744_-	hypothetical protein	NA	J9QDY8	Clostridium_phage	84.5	2.6e-18
AXU65976.1|3639743_3641093_-	hypothetical protein	NA	NA	NA	NA	NA
AXU65977.1|3641309_3641474_-	hypothetical protein	NA	E2ELK4	Clostridium_phage	96.3	6.0e-22
AXU65978.1|3641473_3641767_-	hypothetical protein	NA	A0A090DBT2	Clostridium_phage	91.8	7.7e-44
AXU65979.1|3641780_3643442_-	Glycine rich protein	NA	A0A090EUF1	Clostridium_phage	63.2	9.5e-147
AXU65980.1|3643458_3644484_-|tail	phage tail fiber protein	tail	A3QSB7	Clostridium_virus	96.8	2.1e-160
AXU65981.1|3644495_3645113_-	phage protein	NA	A0A0A8WII4	Clostridium_phage	97.6	2.0e-113
AXU65982.1|3645105_3646155_-	phage protein	NA	A0A0A8WFK0	Clostridium_phage	94.0	3.3e-185
AXU65983.1|3646155_3646575_-	phage protein	NA	X5JB38	Clostridium_phage	93.5	6.4e-68
AXU65984.1|3646579_3646840_-	phage protein	NA	A0A0A8WJ65	Clostridium_phage	90.7	1.2e-35
AXU65985.1|3646853_3648746_-	phage cell wall hydrolase	NA	A3QSB3	Clostridium_virus	82.1	7.2e-308
AXU65986.1|3648738_3649434_-	phage cell wall hydrolase	NA	X5J9Z8	Clostridium_phage	89.6	1.6e-111
AXU65987.1|3649449_3651738_-|tail	phage tail tape measure protein	tail	A0A0A8WJT6	Clostridium_phage	90.2	0.0e+00
AXU65988.1|3651815_3652376_-	phage protein	NA	A0A0A8WFW4	Clostridium_phage	93.0	1.3e-92
AXU65989.1|3652640_3653081_-	phage protein	NA	A0A0A8WJT4	Clostridium_phage	65.8	2.0e-48
AXU65990.1|3653082_3653340_-	hypothetical protein	NA	A0A0A8WFW0	Clostridium_phage	97.6	3.8e-39
AXU65991.1|3653392_3653863_-	phage protein	NA	A0A0A8WJ62	Clostridium_phage	100.0	2.1e-83
AXU65992.1|3653887_3655198_-	phage protein	NA	X5JAJ1	Clostridium_phage	95.4	2.7e-237
AXU65993.1|3655198_3655384_-	hypothetical protein	NA	X5J9Z6	Clostridium_phage	91.4	1.5e-21
AXU65994.1|3655367_3655805_-	phage protein	NA	A0A0A8WJT3	Clostridium_phage	95.2	3.3e-75
AXU65995.1|3655797_3656223_-	phage protein	NA	A0A0A8WFV8	Clostridium_phage	95.0	1.4e-73
AXU65996.1|3656222_3656570_-	phage protein	NA	X5JAV9	Clostridium_phage	97.4	2.1e-56
AXU65997.1|3656563_3656965_-	hypothetical protein	NA	A0A0A8WIE8	Clostridium_phage	98.5	2.5e-69
AXU65998.1|3656974_3657208_-	hypothetical protein	NA	A0A0A8WFD0	Clostridium_phage	100.0	2.2e-33
AXU65999.1|3657207_3658107_-|capsid	phage major capsid protein	capsid	X5J9Z5	Clostridium_phage	99.7	6.2e-169
AXU66000.1|3658118_3658682_-	phage scaffold protein	NA	X5JAB4	Clostridium_phage	98.9	2.4e-86
AXU66001.1|3658747_3658948_-	hypothetical protein	NA	A0A0A8WJ56	Clostridium_phage	100.0	2.3e-31
AXU66002.1|3658962_3660360_-|head	phage minor head protein	head	A0A0A8WJ84	Clostridium_phage	95.9	4.9e-261
AXU66003.1|3660349_3661789_-|portal	phage portal protein	portal	A0A0A8WIH2	Clostridium_phage	96.9	9.7e-273
AXU66004.1|3661794_3663048_-|terminase	phage terminase large subunit	terminase	X5JAB3	Clostridium_phage	99.3	6.1e-247
AXU66005.1|3663025_3663709_-	phage DNA-binding protein	NA	A0A0A8WFS6	Clostridium_phage	87.8	5.3e-104
AXU66006.1|3663838_3664036_-	hypothetical protein	NA	NA	NA	NA	NA
AXU66007.1|3664453_3664954_-	sigma factor	NA	A0A0A8WIG7	Clostridium_phage	53.0	5.6e-42
AXU66008.1|3665053_3665902_-	phage protein	NA	A0A0A8WJ22	Clostridium_phage	96.1	8.8e-149
AXU66009.1|3666002_3666410_-	phage protein	NA	A0A090D860	Clostridium_phage	94.8	1.9e-64
AXU66010.1|3666546_3666777_-	gp91	NA	J9QD24	Clostridium_phage	97.4	1.0e-35
AXU66011.1|3666799_3667072_-	hypothetical protein	NA	J9QDY2	Clostridium_phage	91.1	2.5e-41
AXU66012.1|3667170_3667344_-	hypothetical protein	NA	NA	NA	NA	NA
AXU66013.1|3667441_3667624_-	hypothetical protein	NA	A0A0A8WIL2	Clostridium_phage	98.3	4.8e-28
AXU66014.1|3667626_3667998_-	hypothetical protein	NA	A0A0A8WJ20	Clostridium_phage	87.0	9.1e-58
AXU66015.1|3667990_3668164_-	hypothetical protein	NA	Q24LD3	Clostridium_phage	98.2	8.6e-27
AXU66016.1|3668485_3669481_-	phage protein	NA	J9QE81	Clostridium_phage	82.9	3.4e-152
AXU66017.1|3669492_3669702_-	hypothetical protein	NA	A0A0A8WJB6	Clostridium_phage	94.2	1.5e-28
AXU66018.1|3669812_3669989_-	hypothetical protein	NA	A0A0A8WJ18	Clostridium_phage	100.0	5.9e-23
AXU66019.1|3669991_3670108_-	hypothetical protein	NA	A0A0A8WI97	Clostridium_phage	89.5	3.6e-13
AXU66020.1|3670091_3670541_-	YopX protein	NA	A0A0A8WF29	Clostridium_phage	83.9	1.8e-71
AXU66021.1|3670527_3670677_-	hypothetical protein	NA	A0A0A8WJQ3	Clostridium_phage	81.6	7.2e-14
AXU66022.1|3670645_3671224_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
AXU66023.1|3671225_3671525_-	hypothetical protein	NA	X5JAK1	Clostridium_phage	39.7	3.6e-12
AXU66024.1|3671538_3671796_-	hypothetical protein	NA	A0A0A8WJB4	Clostridium_phage	91.8	1.5e-38
AXU66025.1|3671782_3671953_-|integrase	phage resolvase/integrase	integrase	A0A0A8WIG5	Clostridium_phage	61.9	8.8e-08
AXU66026.1|3672010_3672892_-	phage replication protein	NA	A0A0A8WFH2	Clostridium_phage	95.2	6.8e-152
AXU66027.1|3672906_3673491_-	phage essential recombination function protein	NA	A0A0A8WJU6	Clostridium_phage	99.5	1.5e-102
AXU66028.1|3673500_3674010_-	phage protein	NA	X5JB44	Clostridium_phage	98.2	1.3e-83
AXU66029.1|3674092_3674338_-	hypothetical protein	NA	X5JAW8	Clostridium_phage	86.4	3.1e-30
AXU66030.1|3674642_3674972_-	phage DNA-binding protein	NA	X5JA04	Clostridium_phage	98.2	1.1e-51
AXU66031.1|3674988_3675186_-	phage regulatory protein	NA	A0A0A8WJU5	Clostridium_phage	98.5	9.5e-30
AXU66032.1|3675254_3675488_+	hypothetical protein	NA	A0A0A8WJQ0	Clostridium_phage	98.7	4.5e-39
AXU66033.1|3675490_3675661_-	hypothetical protein	NA	A0A0A8WFJ6	Clostridium_phage	96.4	2.5e-26
AXU66034.1|3675744_3676539_-	phage anti-repressor	NA	Q24LF1	Clostridium_phage	84.0	2.6e-118
AXU66035.1|3676887_3677106_+	helix-turn-helix domain-containing protein	NA	J9QD19	Clostridium_phage	100.0	1.7e-32
AXU66036.1|3677275_3677470_-	DNA-binding protein	NA	NA	NA	NA	NA
AXU66037.1|3677646_3678030_+	phage repressor	NA	X5JA02	Clostridium_phage	40.2	2.2e-14
AXU66038.1|3678041_3678176_-	hypothetical protein	NA	NA	NA	NA	NA
AXU66039.1|3678657_3678855_+	YcfA-like protein	NA	A0A1L2JY37	Aeribacillus_phage	65.1	4.4e-19
AXU66040.1|3678893_3679295_+	phage-like protein	NA	A0A090DBV2	Clostridium_phage	93.2	4.0e-67
AXU66041.1|3679372_3680491_+|integrase	phage integrase	integrase	X5JB41	Clostridium_phage	74.2	3.2e-154
AXU66042.1|3680641_3681322_-	two-component response regulator	NA	W8CYM9	Bacillus_phage	27.7	1.9e-16
AXU66043.1|3681371_3683348_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
AXU66044.1|3683458_3684136_-	two-component response regulator	NA	W8CYM9	Bacillus_phage	28.3	1.3e-25
AXU66045.1|3685031_3685874_-	phosphate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXU66046.1|3686125_3687910_-	endopeptidase	NA	NA	NA	NA	NA
AXU66047.1|3687975_3688641_-	cation transporter	NA	G3MA03	Bacillus_virus	43.2	8.5e-22
AXU66048.1|3688791_3688995_-	Spo0E like sporulation regulatory protein	NA	NA	NA	NA	NA
AXU66049.1|3689030_3689540_-	heptaprenyl diphosphate synthase component I	NA	NA	NA	NA	NA
AXU66050.1|3689746_3689965_+	ferrous iron transport protein A	NA	NA	NA	NA	NA
AXU66051.1|3689982_3691929_+	ferrous iron transport protein B	NA	NA	NA	NA	NA
AXU66052.1|3692108_3693164_-	phosphosugar isomerase	NA	NA	NA	NA	NA
AXU66053.1|3693211_3694012_-	PTS system transporter subunit IID	NA	NA	NA	NA	NA
AXU66054.1|3694004_3694796_-	PTS system transporter subunit IIC	NA	NA	NA	NA	NA
AXU66055.1|3694835_3695258_-	PTS system transporter subunit IIA	NA	NA	NA	NA	NA
AXU66056.1|3695273_3695753_-	PTS system transporter subunit IIB	NA	NA	NA	NA	NA
AXU66057.1|3695884_3698641_-	transcription antiterminator	NA	NA	NA	NA	NA
AXU66058.1|3699238_3700042_-	pyrroline-5-carboxylate reductase	NA	A0A1X9I6T5	Streptococcus_phage	36.3	9.0e-34
AXU66059.1|3700366_3702736_-	formate acetyltransferase	NA	A0A2K8HKE5	Bacteriophage	45.3	2.8e-06
AXU66060.1|3702740_3703649_-	pyruvate formate-lyase 3 activating enzyme	NA	NA	NA	NA	NA
AXU66061.1|3703993_3705073_-|protease	protease	protease	A0A1B1IT49	uncultured_Mediterranean_phage	26.0	1.1e-15
AXU66062.1|3705228_3706578_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
AXU66063.1|3706842_3708471_-	sodium-dependent phosphate transporter	NA	NA	NA	NA	NA
AXU66064.1|3708594_3710199_-	FAD-dependent dehydrogenase	NA	NA	NA	NA	NA
AXU66065.1|3710246_3710564_-	hypothetical protein	NA	NA	NA	NA	NA
AXU66066.1|3710568_3710934_-	hypothetical protein	NA	NA	NA	NA	NA
AXU66067.1|3711014_3712052_-	protein translocase	NA	NA	NA	NA	NA
AXU66068.1|3712304_3712889_-	hypothetical protein	NA	NA	NA	NA	NA
AXU66069.1|3712903_3713347_-	hypothetical protein	NA	NA	NA	NA	NA
AXU66070.1|3713347_3714220_-	fimbrial assembly protein	NA	NA	NA	NA	NA
AXU66071.1|3714273_3714624_-	type IV pilin	NA	NA	NA	NA	NA
AXU66072.1|3714677_3715763_-	type IV pilus-assembly protein	NA	NA	NA	NA	NA
AXU66073.1|3715933_3717277_-	type IV pilus-assembly protein	NA	NA	NA	NA	NA
AXU66074.1|3717305_3717986_-	membrane protein	NA	NA	NA	NA	NA
AXU66075.1|3718377_3719457_-	ATP/GTP-binding protein	NA	NA	NA	NA	NA
AXU66076.1|3720042_3721413_+	transporter	NA	NA	NA	NA	NA
AXU66077.1|3721677_3722289_-	ribosome biogenesis GTP-binding protein YsxC	NA	NA	NA	NA	NA
AXU66078.1|3722278_3724642_-|protease	ATP-dependent protease La	protease	A0A0R6PGP8	Moraxella_phage	44.4	3.1e-175
AXU66079.1|3724821_3725334_+	chromate transport protein	NA	NA	NA	NA	NA
AXU66080.1|3725321_3725849_+	chromate transport protein	NA	NA	NA	NA	NA
AXU66081.1|3725919_3727170_-|protease	ATP-dependent protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	63.1	6.1e-146
AXU66082.1|3727188_3727773_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	58.8	9.3e-57
3727270:3727291	attR	ATCCATTTTAATTTTTTCTAAT	NA	NA	NA	NA
>prophage 13
CP012323	Clostridioides difficile strain DSM 28669 chromosome, complete genome	4137693	3778527	3790927	4137693		Streptococcus_phage(50.0%)	8	NA	NA
AXU66131.1|3778527_3781293_-	magnesium transporting ATPase, P-type	NA	M1HJQ2	Paramecium_bursaria_Chlorella_virus	25.6	5.8e-48
AXU66132.1|3781458_3781770_-	hypothetical protein	NA	NA	NA	NA	NA
AXU66133.1|3782016_3782694_-	magnesium transporting ATPase protein C	NA	G3MA03	Bacillus_virus	36.0	3.3e-13
AXU66134.1|3782831_3783335_-	transcriptional regulator	NA	NA	NA	NA	NA
AXU66135.1|3783350_3786014_-	magnesium transporting ATPase, P-type 1	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	24.8	1.8e-38
AXU66136.1|3786799_3787702_-	conjugative transposon protein	NA	A0A1S5SF22	Streptococcus_phage	52.3	5.8e-82
AXU66137.1|3787718_3788726_-	cell wall hydrolase	NA	A0A1S5SEZ8	Streptococcus_phage	69.3	3.6e-133
AXU66138.1|3788722_3790927_-	conjugative transposon protein	NA	A0A1S5SF30	Streptococcus_phage	51.4	1.1e-182
>prophage 14
CP012323	Clostridioides difficile strain DSM 28669 chromosome, complete genome	4137693	3793970	3800545	4137693		Streptococcus_phage(100.0%)	11	NA	NA
AXU66140.1|3793970_3794375_-	conjugative transposon protein	NA	A0A1S5SF25	Streptococcus_phage	57.6	2.0e-34
AXU66141.1|3794392_3794875_-	conjugative tansposon protein	NA	NA	NA	NA	NA
AXU66142.1|3794814_3795111_-	hypothetical protein	NA	NA	NA	NA	NA
AXU66143.1|3795209_3795962_-	hypothetical protein	NA	NA	NA	NA	NA
AXU66144.1|3796042_3796264_-	conjugative transposon protein	NA	A0A1S5SEY0	Streptococcus_phage	87.7	9.0e-29
AXU66145.1|3796264_3796399_-	conjugative transposon protein	NA	NA	NA	NA	NA
AXU66146.1|3796411_3797608_-	conjugative transposon replication initiation factor	NA	A0A1S5SEX3	Streptococcus_phage	61.8	1.4e-147
AXU66147.1|3797792_3799187_-	conjugative transposon FtsK/SpoIIIE-like protein	NA	A0A1S5SFB5	Streptococcus_phage	65.3	1.0e-173
AXU66148.1|3799280_3799718_-	hypothetical protein	NA	NA	NA	NA	NA
AXU66149.1|3799819_3800203_-	conjugative transposon protein	NA	A0A1S5SF96	Streptococcus_phage	57.0	6.8e-32
AXU66150.1|3800218_3800545_-	conjugative transposon protein	NA	A0A1S5SF38	Streptococcus_phage	52.4	1.8e-25
