assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003481965.1_ASM348196v1	CP019860	Clostridioides difficile strain DSM 29632 chromosome, complete genome	1	131127-131216	1	CRISPRCasFinder	no		cas14k,csa3,WYL,cas14j,cas3,DEDDh,DinG,c2c9_V-U4,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	TGTGCGTTAGCACTTTAAGCAACAGAAT	28	1	3	131155-131188|131155-131188|131155-131188	CP019860.1_17857-17890|CP019860.1_138040-138073|CP019860.1_154103-154136	NA	1	1	Orphan	cas14k,csa3,WYL,cas14j,cas3,DEDDh,DinG,c2c9_V-U4,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|226aa|down_7|CP019860.1_163571_164249_+	NA|208aa|up_9|CP019860.1_121568_122192_+	PRK05327, rpsD, 30S ribosomal protein S4; Validated	NA|316aa|up_8|CP019860.1_122269_123217_+	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional	NA|114aa|up_7|CP019860.1_123237_123579_+	PRK05591, rplQ, 50S ribosomal protein L17; Validated	NA|278aa|up_6|CP019860.1_123698_124532_+	TIGR04520, ECF_ATPase_1, energy-coupling factor transporter ATPase	NA|289aa|up_5|CP019860.1_124519_125386_+	PRK13637, cbiO, energy-coupling factor transporter ATPase	NA|268aa|up_4|CP019860.1_125379_126183_+	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|244aa|up_3|CP019860.1_126214_126946_+	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|144aa|up_2|CP019860.1_127065_127497_+	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|131aa|up_1|CP019860.1_127525_127918_+	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|251aa|up_0|CP019860.1_128376_129129_+	TIGR02883, spore_cwlD, N-acetylmuramoyl-L-alanine amidase CwlD	NA|395aa|down_0|CP019860.1_141661_142846_-	PRK05764, PRK05764, aspartate aminotransferase; Provisional	NA|784aa|down_1|CP019860.1_143218_145570_+	PRK07111, PRK07111, anaerobic ribonucleoside triphosphate reductase; Provisional	NA|180aa|down_2|CP019860.1_145591_146131_+	TIGR02491, Anaerobic_ribonucleoside-triphosphate_reductase, anaerobic ribonucleoside-triphosphate reductase activating protein	NA|280aa|down_3|CP019860.1_159257_160097_+	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|394aa|down_4|CP019860.1_160093_161275_+	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|301aa|down_5|CP019860.1_161578_162481_+	PRK05805, PRK05805, phosphate butyryltransferase; Validated	NA|360aa|down_6|CP019860.1_162502_163582_+	PRK03011, PRK03011, butyrate kinase; Provisional	NA|226aa|down_7|CP019860.1_163571_164249_+	NA	NA|72aa|down_8|CP019860.1_164291_164507_+	COG2221, DsrA, Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]	NA|360aa|down_9|CP019860.1_164535_165615_+	PRK07119, PRK07119, 2-ketoisovalerate ferredoxin reductase; Validated
GCA_003481965.1_ASM348196v1	CP019860	Clostridioides difficile strain DSM 29632 chromosome, complete genome	2	146612-146690	2	CRISPRCasFinder	no		cas14k,csa3,WYL,cas14j,cas3,DEDDh,DinG,c2c9_V-U4,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	TGTTTATAATGTGGATAATATTTAA	25	0	0	NA	NA	NA	1	1	Orphan	cas14k,csa3,WYL,cas14j,cas3,DEDDh,DinG,c2c9_V-U4,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|226aa|down_4|CP019860.1_163571_164249_+	NA|278aa|up_9|CP019860.1_123698_124532_+	TIGR04520, ECF_ATPase_1, energy-coupling factor transporter ATPase	NA|289aa|up_8|CP019860.1_124519_125386_+	PRK13637, cbiO, energy-coupling factor transporter ATPase	NA|268aa|up_7|CP019860.1_125379_126183_+	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|244aa|up_6|CP019860.1_126214_126946_+	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|144aa|up_5|CP019860.1_127065_127497_+	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|131aa|up_4|CP019860.1_127525_127918_+	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|251aa|up_3|CP019860.1_128376_129129_+	TIGR02883, spore_cwlD, N-acetylmuramoyl-L-alanine amidase CwlD	NA|395aa|up_2|CP019860.1_141661_142846_-	PRK05764, PRK05764, aspartate aminotransferase; Provisional	NA|784aa|up_1|CP019860.1_143218_145570_+	PRK07111, PRK07111, anaerobic ribonucleoside triphosphate reductase; Provisional	NA|180aa|up_0|CP019860.1_145591_146131_+	TIGR02491, Anaerobic_ribonucleoside-triphosphate_reductase, anaerobic ribonucleoside-triphosphate reductase activating protein	NA|280aa|down_0|CP019860.1_159257_160097_+	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|394aa|down_1|CP019860.1_160093_161275_+	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|301aa|down_2|CP019860.1_161578_162481_+	PRK05805, PRK05805, phosphate butyryltransferase; Validated	NA|360aa|down_3|CP019860.1_162502_163582_+	PRK03011, PRK03011, butyrate kinase; Provisional	NA|226aa|down_4|CP019860.1_163571_164249_+	NA	NA|72aa|down_5|CP019860.1_164291_164507_+	COG2221, DsrA, Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]	NA|360aa|down_6|CP019860.1_164535_165615_+	PRK07119, PRK07119, 2-ketoisovalerate ferredoxin reductase; Validated	NA|251aa|down_7|CP019860.1_165614_166367_+	cd03375, TPP_OGFOR, Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor	NA|186aa|down_8|CP019860.1_166367_166925_+	pfam01558, POR, Pyruvate ferredoxin/flavodoxin oxidoreductase	NA|449aa|down_9|CP019860.1_167094_168441_+	PRK14316, glmM, phosphoglucosamine mutase; Provisional
GCA_003481965.1_ASM348196v1	CP019860	Clostridioides difficile strain DSM 29632 chromosome, complete genome	3	148624-148713	3	CRISPRCasFinder	no		cas14k,csa3,WYL,cas14j,cas3,DEDDh,DinG,c2c9_V-U4,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	TGTGCGTTAGCACTTTAAGCAACAGAAT	28	1	3	148652-148685|148652-148685|148652-148685	CP019860.1_17857-17890|CP019860.1_138040-138073|CP019860.1_154103-154136	NA	1	1	Orphan	cas14k,csa3,WYL,cas14j,cas3,DEDDh,DinG,c2c9_V-U4,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|226aa|down_4|CP019860.1_163571_164249_+	NA|278aa|up_9|CP019860.1_123698_124532_+	TIGR04520, ECF_ATPase_1, energy-coupling factor transporter ATPase	NA|289aa|up_8|CP019860.1_124519_125386_+	PRK13637, cbiO, energy-coupling factor transporter ATPase	NA|268aa|up_7|CP019860.1_125379_126183_+	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|244aa|up_6|CP019860.1_126214_126946_+	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|144aa|up_5|CP019860.1_127065_127497_+	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|131aa|up_4|CP019860.1_127525_127918_+	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|251aa|up_3|CP019860.1_128376_129129_+	TIGR02883, spore_cwlD, N-acetylmuramoyl-L-alanine amidase CwlD	NA|395aa|up_2|CP019860.1_141661_142846_-	PRK05764, PRK05764, aspartate aminotransferase; Provisional	NA|784aa|up_1|CP019860.1_143218_145570_+	PRK07111, PRK07111, anaerobic ribonucleoside triphosphate reductase; Provisional	NA|180aa|up_0|CP019860.1_145591_146131_+	TIGR02491, Anaerobic_ribonucleoside-triphosphate_reductase, anaerobic ribonucleoside-triphosphate reductase activating protein	NA|280aa|down_0|CP019860.1_159257_160097_+	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|394aa|down_1|CP019860.1_160093_161275_+	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|301aa|down_2|CP019860.1_161578_162481_+	PRK05805, PRK05805, phosphate butyryltransferase; Validated	NA|360aa|down_3|CP019860.1_162502_163582_+	PRK03011, PRK03011, butyrate kinase; Provisional	NA|226aa|down_4|CP019860.1_163571_164249_+	NA	NA|72aa|down_5|CP019860.1_164291_164507_+	COG2221, DsrA, Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]	NA|360aa|down_6|CP019860.1_164535_165615_+	PRK07119, PRK07119, 2-ketoisovalerate ferredoxin reductase; Validated	NA|251aa|down_7|CP019860.1_165614_166367_+	cd03375, TPP_OGFOR, Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor	NA|186aa|down_8|CP019860.1_166367_166925_+	pfam01558, POR, Pyruvate ferredoxin/flavodoxin oxidoreductase	NA|449aa|down_9|CP019860.1_167094_168441_+	PRK14316, glmM, phosphoglucosamine mutase; Provisional
GCA_003481965.1_ASM348196v1	CP019860	Clostridioides difficile strain DSM 29632 chromosome, complete genome	4	1292748-1293762	4,1,1	CRISPRCasFinder,PILER-CR,CRT	no		cas14k,csa3,WYL,cas14j,cas3,DEDDh,DinG,c2c9_V-U4,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	AGTTTTATATTAACTAAGTGGTATGTAAAG,GTTTTATATTAACTAAGTGGTATGTAAAG,GTTTTATATTAACTAAGTGGTATGTAAAG	30,29,29	0	0	NA	NA	I-A:I-A:I-A	15,15,15	15	Orphan	cas14k,csa3,WYL,cas14j,cas3,DEDDh,DinG,c2c9_V-U4,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|52aa|down_0|CP019860.1_1294945_1295101_+,NA|84aa|down_1|CP019860.1_1295346_1295598_+,NA|38aa|down_2|CP019860.1_1295918_1296032_+,NA|128aa|down_3|CP019860.1_1296818_1297202_-,NA|115aa|down_4|CP019860.1_1297328_1297673_+,NA|106aa|down_5|CP019860.1_1299056_1299374_-,NA|65aa|down_8|CP019860.1_1301758_1301953_-	NA|271aa|up_9|CP019860.1_1279858_1280671_+	cd09009, PNP-EcPNPII_like, purine nucleoside phosphorylases similar to human PNP and Escherichia coli PNP-II (XapA)	NA|442aa|up_8|CP019860.1_1280874_1282200_+	TIGR02644, Thymidine_phosphorylase, pyrimidine-nucleoside phosphorylase	NA|360aa|up_7|CP019860.1_1282412_1283492_+	pfam02618, YceG, YceG-like family	NA|225aa|up_6|CP019860.1_1283663_1284338_+	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]	NA|416aa|up_5|CP019860.1_1284324_1285572_+	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|555aa|up_4|CP019860.1_1285643_1287308_+	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane]	NA|95aa|up_3|CP019860.1_1287404_1287689_-	PRK05803, PRK05803, RNA polymerase sporulation sigma factor SigK	NA|506aa|up_2|CP019860.1_1287711_1289229_-	cd00338, Ser_Recombinase, Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain	NA|274aa|up_1|CP019860.1_1289353_1290175_-	sd00006, TPR, Tetratricopeptide repeat	NA|476aa|up_0|CP019860.1_1290365_1291793_+	NF033435, S-layer_Clost, S-layer protein SlpA	NA|52aa|down_0|CP019860.1_1294945_1295101_+	NA	NA|84aa|down_1|CP019860.1_1295346_1295598_+	NA	NA|38aa|down_2|CP019860.1_1295918_1296032_+	NA	NA|128aa|down_3|CP019860.1_1296818_1297202_-	NA	NA|115aa|down_4|CP019860.1_1297328_1297673_+	NA	NA|106aa|down_5|CP019860.1_1299056_1299374_-	NA	NA|130aa|down_6|CP019860.1_1300434_1300824_+	pfam03965, Penicillinase_R, Penicillinase repressor	NA|170aa|down_7|CP019860.1_1301147_1301657_+	pfam04892, VanZ, VanZ like family	NA|65aa|down_8|CP019860.1_1301758_1301953_-	NA	NA|131aa|down_9|CP019860.1_1302468_1302861_-	PRK05803, PRK05803, RNA polymerase sporulation sigma factor SigK
GCA_003481965.1_ASM348196v1	CP019860	Clostridioides difficile strain DSM 29632 chromosome, complete genome	5	1503410-1504364	2,5,2	PILER-CR,CRISPRCasFinder,CRT	no	DinG	cas14k,csa3,WYL,cas14j,cas3,DEDDh,DinG,c2c9_V-U4,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Type IV-A	GTTTTATATTAACTAAGTGGTATGTAAAT,GTTTTATATTAACTAAGTGGTATGTAAAT,GTTTTATATTAACTAAGTGGTATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	12,14,13	14	Orphan	cas14k,csa3,WYL,cas14j,cas3,DEDDh,DinG,c2c9_V-U4,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|183aa|up_4|CP019860.1_1498517_1499066_-,NA|51aa|up_0|CP019860.1_1502977_1503130_+,NA|80aa|down_4|CP019860.1_1511510_1511750_+,NA|59aa|down_5|CP019860.1_1511919_1512096_-,NA|45aa|down_9|CP019860.1_1514722_1514857_+	NA|260aa|up_9|CP019860.1_1492833_1493613_+	pfam08282, Hydrolase_3, haloacid dehalogenase-like hydrolase	NA|195aa|up_8|CP019860.1_1493716_1494301_-	pfam00882, Zn_dep_PLPC, Zinc dependent phospholipase C	NA|477aa|up_7|CP019860.1_1494500_1495931_-	COG3829, RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]	NA|315aa|up_6|CP019860.1_1496248_1497193_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|329aa|up_5|CP019860.1_1497463_1498450_-	COG1242, COG1242, Predicted Fe-S oxidoreductase [General function prediction only]	NA|183aa|up_4|CP019860.1_1498517_1499066_-	NA	NA|143aa|up_3|CP019860.1_1499217_1499646_+	pfam04657, DMT_YdcZ, Putative inner membrane exporter, YdcZ	NA|217aa|up_2|CP019860.1_1499730_1500381_+	cd01994, Alpha_ANH_like_IV, This is a subfamily of Adenine nucleotide alpha hydrolases superfamily	NA|452aa|up_1|CP019860.1_1500498_1501854_-	cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA	NA|51aa|up_0|CP019860.1_1502977_1503130_+	NA	NA|578aa|down_0|CP019860.1_1504689_1506423_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|282aa|down_1|CP019860.1_1506662_1507508_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|745aa|down_2|CP019860.1_1507538_1509773_-	cd01948, EAL, EAL domain	NA|270aa|down_3|CP019860.1_1510556_1511366_+	cd00592, HTH_MerR-like, Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators	NA|80aa|down_4|CP019860.1_1511510_1511750_+	NA	NA|59aa|down_5|CP019860.1_1511919_1512096_-	NA	NA|225aa|down_6|CP019860.1_1512600_1513275_-	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|185aa|down_7|CP019860.1_1513494_1514049_-	cd01014, nicotinamidase_related, Nicotinamidase_ related amidohydrolases	NA|122aa|down_8|CP019860.1_1514126_1514492_-	COG1733, COG1733, Predicted transcriptional regulators [Transcription]	NA|45aa|down_9|CP019860.1_1514722_1514857_+	NA
GCA_003481965.1_ASM348196v1	CP019860	Clostridioides difficile strain DSM 29632 chromosome, complete genome	6	1614598-1615068	3,6,3	PILER-CR,CRISPRCasFinder,CRT	no	cas14j	cas14k,csa3,WYL,cas14j,cas3,DEDDh,DinG,c2c9_V-U4,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Unclear	GTTTTATATTAACTATATGGAATGTAAAT,GTTTTATATTAACTATATGGAATGTAAAT,GTTTTATATTAACTATATGGAATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	6,7,7	7	TypeV	cas14k,csa3,WYL,cas14j,cas3,DEDDh,DinG,c2c9_V-U4,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|190aa|up_7|CP019860.1_1604488_1605058_+,NA|61aa|up_4|CP019860.1_1608007_1608190_-,NA|323aa|down_4|CP019860.1_1619990_1620959_+	NA|195aa|up_9|CP019860.1_1602847_1603432_+	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|300aa|up_8|CP019860.1_1603584_1604484_+	TIGR02163, Ferredoxin-type_protein_NapH_homolog, ferredoxin-type protein, NapH/MauN family	NA|190aa|up_7|CP019860.1_1604488_1605058_+	NA	NA|216aa|up_6|CP019860.1_1605224_1605872_-	pfam02589, LUD_dom, LUD domain	NA|305aa|up_5|CP019860.1_1606261_1607176_-	pfam11155, DUF2935, Domain of unknown function (DUF2935)	NA|61aa|up_4|CP019860.1_1608007_1608190_-	NA	NA|283aa|up_3|CP019860.1_1608600_1609449_-	PRK00380, panC, pantoate--beta-alanine ligase; Reviewed	NA|276aa|up_2|CP019860.1_1609467_1610295_-	PRK00311, panB, 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed	NA|299aa|up_1|CP019860.1_1610269_1611166_-	pfam10728, DUF2520, Domain of unknown function (DUF2520)	NA|698aa|up_0|CP019860.1_1611845_1613939_+	cd01948, EAL, EAL domain	NA|273aa|down_0|CP019860.1_1615726_1616545_+	cd04782, HTH_BltR, Helix-Turn-Helix DNA binding domain of the BltR transcription regulator	NA|707aa|down_1|CP019860.1_1616677_1618798_-	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]	NA|76aa|down_2|CP019860.1_1618823_1619051_-	pfam04023, FeoA, FeoA domain	NA|147aa|down_3|CP019860.1_1619377_1619818_-	COG2153, ElaA, Predicted acyltransferase [General function prediction only]	NA|323aa|down_4|CP019860.1_1619990_1620959_+	NA	NA|403aa|down_5|CP019860.1_1621435_1622644_+	PRK13354, PRK13354, tyrosyl-tRNA synthetase; Provisional	NA|294aa|down_6|CP019860.1_1622704_1623586_-	cd10944, CE4_SmPgdA_like, Catalytic NodB homology domain of Streptococcus mutans polysaccharide deacetylase PgdA, Bacillus subtilis YheN, and similar proteins	NA|305aa|down_7|CP019860.1_1624001_1624916_+	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|182aa|down_8|CP019860.1_1625138_1625684_+	cd01046, Rubrerythrin_like, rubrerythrin-like, diiron-binding domain	NA|383aa|down_9|CP019860.1_1625783_1626932_+	COG2006, COG2006, Uncharacterized conserved protein [Function unknown]
GCA_003481965.1_ASM348196v1	CP019860	Clostridioides difficile strain DSM 29632 chromosome, complete genome	7	1707381-1707675	4,7,4	PILER-CR,CRISPRCasFinder,CRT	no		cas14k,csa3,WYL,cas14j,cas3,DEDDh,DinG,c2c9_V-U4,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	GTTTTAGATTAACTATATGGAATGTAAAT,GTTTTAGATTAACTATATGGAATGTAAAT,GTTTTAGATTAACTATATGGAATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	3,4,4	4	Orphan	cas14k,csa3,WYL,cas14j,cas3,DEDDh,DinG,c2c9_V-U4,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|134aa|up_8|CP019860.1_1702066_1702468_+,NA|116aa|up_7|CP019860.1_1702461_1702809_+,NA|146aa|up_5|CP019860.1_1703226_1703664_+,NA|62aa|up_4|CP019860.1_1703647_1703833_+,NA|35aa|up_0|CP019860.1_1706985_1707090_+,NA|58aa|down_1|CP019860.1_1708848_1709022_+,NA|59aa|down_3|CP019860.1_1710021_1710198_+	NA|78aa|up_9|CP019860.1_1701823_1702057_+	TIGR03752, conj_TIGR03752, integrating conjugative element protein, PFL_4705 family	NA|134aa|up_8|CP019860.1_1702066_1702468_+	NA	NA|116aa|up_7|CP019860.1_1702461_1702809_+	NA	NA|142aa|up_6|CP019860.1_1702808_1703234_+	pfam04883, HK97-gp10_like, Bacteriophage HK97-gp10, putative tail-component	NA|146aa|up_5|CP019860.1_1703226_1703664_+	NA	NA|62aa|up_4|CP019860.1_1703647_1703833_+	NA	NA|437aa|up_3|CP019860.1_1703833_1705144_+	pfam04984, Phage_sheath_1, Phage tail sheath protein subtilisin-like domain	NA|157aa|up_2|CP019860.1_1705160_1705631_+	pfam09393, DUF2001, Phage tail tube protein	NA|147aa|up_1|CP019860.1_1705702_1706143_+	pfam08890, Phage_TAC_5, Phage XkdN-like tail assembly chaperone protein, TAC	NA|35aa|up_0|CP019860.1_1706985_1707090_+	NA	NA|251aa|down_0|CP019860.1_1707792_1708545_+	pfam09851, SHOCT, Short C-terminal domain	NA|58aa|down_1|CP019860.1_1708848_1709022_+	NA	NA|276aa|down_2|CP019860.1_1709145_1709973_+	smart01040, Bro-N, BRO family, N-terminal domain	NA|59aa|down_3|CP019860.1_1710021_1710198_+	NA	NA|187aa|down_4|CP019860.1_1710628_1711189_+	pfam00542, Ribosomal_L12, Ribosomal protein L7/L12 C-terminal domain	NA|789aa|down_5|CP019860.1_1711264_1713631_+	TIGR02675, Mu-like_prophage_FluMu_protein_gp42, tape measure domain	NA|234aa|down_6|CP019860.1_1713646_1714348_+	PRK11198, PRK11198, LysM domain/BON superfamily protein; Provisional	NA|655aa|down_7|CP019860.1_1714340_1716305_+	pfam00877, NLPC_P60, NlpC/P60 family	NA|87aa|down_8|CP019860.1_1716318_1716579_+	pfam10844, DUF2577, Protein of unknown function (DUF2577)	NA|140aa|down_9|CP019860.1_1716583_1717003_+	pfam10934, DUF2634, Protein of unknown function (DUF2634)
GCA_003481965.1_ASM348196v1	CP019860	Clostridioides difficile strain DSM 29632 chromosome, complete genome	8	1710275-1710500	5,8,5	CRT,CRISPRCasFinder,PILER-CR	no		cas14k,csa3,WYL,cas14j,cas3,DEDDh,DinG,c2c9_V-U4,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	GTTTTATATTAACTATGTGGTATGTAAAT,TTTTATATTAACTATGTGGTATGTAAAT,TTTTATATTAACTATGTGGTATGTAAATA	29,28,29	0	0	NA	NA	I-A:I-A:I-A	3,3,2	3	Orphan	cas14k,csa3,WYL,cas14j,cas3,DEDDh,DinG,c2c9_V-U4,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|146aa|up_9|CP019860.1_1703226_1703664_+,NA|62aa|up_8|CP019860.1_1703647_1703833_+,NA|35aa|up_4|CP019860.1_1706985_1707090_+,NA|58aa|up_2|CP019860.1_1708848_1709022_+,NA|59aa|up_0|CP019860.1_1710021_1710198_+,NA	NA|146aa|up_9|CP019860.1_1703226_1703664_+	NA	NA|62aa|up_8|CP019860.1_1703647_1703833_+	NA	NA|437aa|up_7|CP019860.1_1703833_1705144_+	pfam04984, Phage_sheath_1, Phage tail sheath protein subtilisin-like domain	NA|157aa|up_6|CP019860.1_1705160_1705631_+	pfam09393, DUF2001, Phage tail tube protein	NA|147aa|up_5|CP019860.1_1705702_1706143_+	pfam08890, Phage_TAC_5, Phage XkdN-like tail assembly chaperone protein, TAC	NA|35aa|up_4|CP019860.1_1706985_1707090_+	NA	NA|251aa|up_3|CP019860.1_1707792_1708545_+	pfam09851, SHOCT, Short C-terminal domain	NA|58aa|up_2|CP019860.1_1708848_1709022_+	NA	NA|276aa|up_1|CP019860.1_1709145_1709973_+	smart01040, Bro-N, BRO family, N-terminal domain	NA|59aa|up_0|CP019860.1_1710021_1710198_+	NA	NA|187aa|down_0|CP019860.1_1710628_1711189_+	pfam00542, Ribosomal_L12, Ribosomal protein L7/L12 C-terminal domain	NA|789aa|down_1|CP019860.1_1711264_1713631_+	TIGR02675, Mu-like_prophage_FluMu_protein_gp42, tape measure domain	NA|234aa|down_2|CP019860.1_1713646_1714348_+	PRK11198, PRK11198, LysM domain/BON superfamily protein; Provisional	NA|655aa|down_3|CP019860.1_1714340_1716305_+	pfam00877, NLPC_P60, NlpC/P60 family	NA|87aa|down_4|CP019860.1_1716318_1716579_+	pfam10844, DUF2577, Protein of unknown function (DUF2577)	NA|140aa|down_5|CP019860.1_1716583_1717003_+	pfam10934, DUF2634, Protein of unknown function (DUF2634)	NA|349aa|down_6|CP019860.1_1717003_1718050_+	pfam04865, Baseplate_J, Baseplate J-like protein	NA|206aa|down_7|CP019860.1_1718042_1718660_+	pfam10076, DUF2313, Uncharacterized protein conserved in bacteria (DUF2313)	NA|331aa|down_8|CP019860.1_1718671_1719664_+	pfam12571, DUF3751, Phage tail-collar fibre protein	NA|571aa|down_9|CP019860.1_1719680_1721393_+	pfam12810, Gly_rich, Glycine rich protein
GCA_003481965.1_ASM348196v1	CP019860	Clostridioides difficile strain DSM 29632 chromosome, complete genome	9	1848298-1849904	6,9,6	PILER-CR,CRISPRCasFinder,CRT	no	cas14j	cas14k,csa3,WYL,cas14j,cas3,DEDDh,DinG,c2c9_V-U4,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Unclear	GTTTTATATTAACTATGTGGTATGTAAAT,GTTTTATATTAACTATGTGGTATGTAAAT,GTTTTATATTAACTATGTGGTATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	24,24,24	24	TypeV	cas14k,csa3,WYL,cas14j,cas3,DEDDh,DinG,c2c9_V-U4,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|96aa|down_0|CP019860.1_1850312_1850600_+,NA|33aa|down_1|CP019860.1_1850624_1850723_+,NA|59aa|down_6|CP019860.1_1856989_1857166_-,NA|341aa|down_7|CP019860.1_1857740_1858763_+,NA|258aa|down_9|CP019860.1_1859669_1860443_+	NA|329aa|up_9|CP019860.1_1830512_1831499_-	TIGR00545, Probable_lipoate-protein_ligase_A, lipoyltransferase and lipoate-protein ligase	NA|577aa|up_8|CP019860.1_1831982_1833713_+	COG1757, NhaC, Na+/H+ antiporter [Energy production and conversion]	NA|172aa|up_7|CP019860.1_1834237_1834753_+	pfam13787, HXXEE, Protein of unknown function with HXXEE motif	NA|825aa|up_6|CP019860.1_1835558_1838033_+	PRK00451, PRK00451, aminomethyl-transferring glycine dehydrogenase subunit GcvPA	NA|486aa|up_5|CP019860.1_1838032_1839490_+	PRK04366, PRK04366, aminomethyl-transferring glycine dehydrogenase subunit GcvPB	NA|786aa|up_4|CP019860.1_1839912_1842270_+	cd02609, P-type_ATPase, uncharacterized subfamily of P-type ATPase transporter, similar to uncharacterized Streptococcus pneumoniae exported protein 7, Exp7	NA|106aa|up_3|CP019860.1_1842355_1842673_-	pfam06865, DUF1255, Protein of unknown function (DUF1255)	cas14j|370aa|up_2|CP019860.1_1843700_1844810_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|252aa|up_1|CP019860.1_1844985_1845741_+	pfam12395, DUF3658, Protein of unknown function	NA|424aa|up_0|CP019860.1_1846379_1847651_-	cd01303, GDEase, Guanine deaminase (GDEase)	NA|96aa|down_0|CP019860.1_1850312_1850600_+	NA	NA|33aa|down_1|CP019860.1_1850624_1850723_+	NA	NA|184aa|down_2|CP019860.1_1851138_1851690_-	cd02209, cupin_XRE_C, XRE (Xenobiotic Response Element) family transcriptional regulators, C-terminal cupin domain	NA|321aa|down_3|CP019860.1_1851880_1852843_+	cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase	NA|615aa|down_4|CP019860.1_1853136_1854981_+	cd08579, GDPD_memb_like, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases	NA|195aa|down_5|CP019860.1_1855302_1855887_+	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates	NA|59aa|down_6|CP019860.1_1856989_1857166_-	NA	NA|341aa|down_7|CP019860.1_1857740_1858763_+	NA	NA|296aa|down_8|CP019860.1_1858776_1859664_+	cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component	NA|258aa|down_9|CP019860.1_1859669_1860443_+	NA
GCA_003481965.1_ASM348196v1	CP019860	Clostridioides difficile strain DSM 29632 chromosome, complete genome	10	2513371-2513990	10,7,7	CRISPRCasFinder,CRT,PILER-CR	no	c2c9_V-U4	cas14k,csa3,WYL,cas14j,cas3,DEDDh,DinG,c2c9_V-U4,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Type V-U4	ATTTACATTCCATATAGTTAATCTAAAAC,ATTTACATTCCATATAGTTAATCTAAAAC,GTTTTAGATTAACTATATGGAATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	9,9,8	9	TypeV-U4	cas14k,csa3,WYL,cas14j,cas3,DEDDh,DinG,c2c9_V-U4,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|138aa|up_7|CP019860.1_2509628_2510042_+,NA|67aa|up_6|CP019860.1_2510060_2510261_+,NA|106aa|up_5|CP019860.1_2510638_2510956_+,NA|155aa|up_4|CP019860.1_2511091_2511556_+,NA|54aa|up_3|CP019860.1_2511879_2512041_-,NA|151aa|up_2|CP019860.1_2512092_2512545_-,NA|51aa|up_0|CP019860.1_2513027_2513180_-,NA|51aa|down_1|CP019860.1_2515373_2515526_-,NA|111aa|down_2|CP019860.1_2515799_2516132_-,NA|85aa|down_3|CP019860.1_2516158_2516413_-	NA|125aa|up_9|CP019860.1_2508818_2509193_-	pfam03965, Penicillinase_R, Penicillinase repressor	NA|78aa|up_8|CP019860.1_2509411_2509645_+	COG1476, COG1476, Predicted transcriptional regulators [Transcription]	NA|138aa|up_7|CP019860.1_2509628_2510042_+	NA	NA|67aa|up_6|CP019860.1_2510060_2510261_+	NA	NA|106aa|up_5|CP019860.1_2510638_2510956_+	NA	NA|155aa|up_4|CP019860.1_2511091_2511556_+	NA	NA|54aa|up_3|CP019860.1_2511879_2512041_-	NA	NA|151aa|up_2|CP019860.1_2512092_2512545_-	NA	NA|122aa|up_1|CP019860.1_2512541_2512907_-	smart01040, Bro-N, BRO family, N-terminal domain	NA|51aa|up_0|CP019860.1_2513027_2513180_-	NA	NA|295aa|down_0|CP019860.1_2514295_2515180_-	COG3247, HdeD, Uncharacterized conserved protein [Function unknown]	NA|51aa|down_1|CP019860.1_2515373_2515526_-	NA	NA|111aa|down_2|CP019860.1_2515799_2516132_-	NA	NA|85aa|down_3|CP019860.1_2516158_2516413_-	NA	c2c9_V-U4|98aa|down_4|CP019860.1_2516844_2517138_-	pfam07282, OrfB_Zn_ribbon, Putative transposase DNA-binding domain	NA|64aa|down_5|CP019860.1_2517835_2518027_-	pfam03965, Penicillinase_R, Penicillinase repressor	NA|125aa|down_6|CP019860.1_2518131_2518506_-	pfam03965, Penicillinase_R, Penicillinase repressor	NA|163aa|down_7|CP019860.1_2519309_2519798_+	COG2165, PulG, Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion]	NA|78aa|down_8|CP019860.1_2520789_2521023_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|117aa|down_9|CP019860.1_2521184_2521535_+	pfam12676, DUF3796, Protein of unknown function (DUF3796)
GCA_003481965.1_ASM348196v1	CP019860	Clostridioides difficile strain DSM 29632 chromosome, complete genome	11	2676231-2676388	8	PILER-CR	no	cas3,cas5,cas7,cas6	cas14k,csa3,WYL,cas14j,cas3,DEDDh,DinG,c2c9_V-U4,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Unclear	AGGTTTAAGATTAACTAAGTGGATTTCA	28	0	0	NA	NA	NA	2	2	Unclear	cas14k,csa3,WYL,cas14j,cas3,DEDDh,DinG,c2c9_V-U4,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|492aa|down_3|CP019860.1_2680810_2682286_-	NA|448aa|up_9|CP019860.1_2668687_2670031_-	pfam06898, YqfD, Putative stage IV sporulation protein YqfD	NA|79aa|up_8|CP019860.1_2670043_2670280_-	pfam07873, YabP, YabP family	NA|188aa|up_7|CP019860.1_2670492_2671056_-	cd00552, RaiA, RaiA ("ribosome-associated inhibitor A", also known as Protein Y (PY), YfiA, and SpotY,  is a stress-response protein that binds the ribosomal subunit interface and arrests translation by interfering with aminoacyl-tRNA binding to the ribosomal A site	NA|166aa|up_6|CP019860.1_2671248_2671746_-	cd15904, TSPO_MBR, Translocator protein (TSPO)/peripheral-type benzodiazepine receptor (MBR) family	NA|148aa|up_5|CP019860.1_2671856_2672300_-	pfam09424, YqeY, Yqey-like protein	NA|60aa|up_4|CP019860.1_2672329_2672509_-	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|117aa|up_3|CP019860.1_2672671_2673022_-	cd01276, PKCI_related, Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides	NA|433aa|up_2|CP019860.1_2673064_2674363_-	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|253aa|up_1|CP019860.1_2674364_2675123_-	PRK11713, PRK11713, 16S ribosomal RNA methyltransferase RsmE; Provisional	NA|316aa|up_0|CP019860.1_2675141_2676089_-	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	cas3|803aa|down_0|CP019860.1_2676529_2678938_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas5|266aa|down_1|CP019860.1_2678964_2679762_-	cd09658, Cas5_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|338aa|down_2|CP019860.1_2679777_2680791_-	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	NA|492aa|down_3|CP019860.1_2680810_2682286_-	NA	cas6|246aa|down_4|CP019860.1_2682290_2683028_-	cd09652, Cas6-I-III, CRISPR/Cas system-associated RAMP superfamily protein Cas6	NA|370aa|down_5|CP019860.1_2683285_2684395_+	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA|256aa|down_6|CP019860.1_2684424_2685192_+	pfam13556, HTH_30, PucR C-terminal helix-turn-helix domain	NA|458aa|down_7|CP019860.1_2685379_2686753_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|312aa|down_8|CP019860.1_2686788_2687724_-	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|385aa|down_9|CP019860.1_2688689_2689844_-	PRK10767, PRK10767, chaperone protein DnaJ; Provisional
GCA_003481965.1_ASM348196v1	CP019860	Clostridioides difficile strain DSM 29632 chromosome, complete genome	12	2757674-2757836	9,11	PILER-CR,CRISPRCasFinder	no		cas14k,csa3,WYL,cas14j,cas3,DEDDh,DinG,c2c9_V-U4,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	GAGTTTTATATTAACTATATGGAATGTAAATT,ATTTACATTCCATATAGTTAATATAAAAC	32,29	0	0	NA	NA	I-A:I-A	2,2	2	Orphan	cas14k,csa3,WYL,cas14j,cas3,DEDDh,DinG,c2c9_V-U4,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|33aa|up_0|CP019860.1_2757111_2757210_-,NA|53aa|down_0|CP019860.1_2758119_2758278_-	NA|238aa|up_9|CP019860.1_2746002_2746716_-	COG2169, Ada, Adenosine deaminase [Nucleotide transport and metabolism]	NA|451aa|up_8|CP019860.1_2746891_2748244_-	cd05298, GH4_GlvA_pagL_like, Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases	NA|517aa|up_7|CP019860.1_2748340_2749891_-	TIGR02005, PTS-IIBC-alpha, PTS system, alpha-glucoside-specific IIBC component	NA|272aa|up_6|CP019860.1_2749940_2750756_-	PRK09772, PRK09772, transcriptional antiterminator BglG; Provisional	NA|161aa|up_5|CP019860.1_2750776_2751259_-	pfam00358, PTS_EIIA_1, phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1	NA|127aa|up_4|CP019860.1_2751542_2751923_-	TIGR00004, RutC_family_protein, reactive intermediate/imine deaminase	NA|406aa|up_3|CP019860.1_2752017_2753235_-	PRK08198, PRK08198, threonine dehydratase; Provisional	NA|543aa|up_2|CP019860.1_2753893_2755522_+	TIGR03801, For_A_Pyridoxal-5-_Phosphate, aspartate 4-decarboxylase	NA|332aa|up_1|CP019860.1_2755642_2756638_+	cd08964, L-asparaginase_II, Type II (periplasmic) bacterial L-asparaginase	NA|33aa|up_0|CP019860.1_2757111_2757210_-	NA	NA|53aa|down_0|CP019860.1_2758119_2758278_-	NA	NA|457aa|down_1|CP019860.1_2758636_2760007_-	NF033435, S-layer_Clost, S-layer protein SlpA	NA|42aa|down_2|CP019860.1_2761205_2761331_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|223aa|down_3|CP019860.1_2761648_2762317_-	pfam04892, VanZ, VanZ like family	NA|807aa|down_4|CP019860.1_2763170_2765591_-	PRK00390, leuS, leucyl-tRNA synthetase; Validated	NA|117aa|down_5|CP019860.1_2765944_2766295_-	pfam02410, RsfS, Ribosomal silencing factor during starvation	NA|191aa|down_6|CP019860.1_2766411_2766984_-	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]	NA|230aa|down_7|CP019860.1_2766984_2767674_-	PRK00071, nadD, nicotinate-nucleotide adenylyltransferase	NA|213aa|down_8|CP019860.1_2767949_2768588_+	PRK00117, recX, recombination regulator RecX; Reviewed	NA|668aa|down_9|CP019860.1_2768740_2770744_+	PLN02447, PLN02447, 1,4-alpha-glucan-branching enzyme
GCA_003481965.1_ASM348196v1	CP019860	Clostridioides difficile strain DSM 29632 chromosome, complete genome	17	3257956-3259678	16,8,10	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6,WYL	cas14k,csa3,WYL,cas14j,cas3,DEDDh,DinG,c2c9_V-U4,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Unclear	ATTTACATACCACTTAGTTAATATAAAAC,ATTTACATACCACTTAGTTAATATAAAAC,GTTTTATATTAACTAAGTGGTATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	26,26,19	26	Unclear	cas14k,csa3,WYL,cas14j,cas3,DEDDh,DinG,c2c9_V-U4,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|67aa|up_7|CP019860.1_3250849_3251050_+,NA|260aa|up_1|CP019860.1_3256232_3257012_+,NA	NA|740aa|up_9|CP019860.1_3245196_3247416_-	cd01948, EAL, EAL domain	NA|885aa|up_8|CP019860.1_3247691_3250346_-	PRK13805, PRK13805, bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional	NA|67aa|up_7|CP019860.1_3250849_3251050_+	NA	NA|197aa|up_6|CP019860.1_3251256_3251847_-	PRK08305, spoVFB, dipicolinate synthase subunit B; Reviewed	NA|292aa|up_5|CP019860.1_3251849_3252725_-	PRK08306, PRK08306, dipicolinate synthase subunit DpsA	NA|464aa|up_4|CP019860.1_3252800_3254192_-	cd17633, AFD_YhfT-like, fatty acid-CoA ligase VraA	NA|379aa|up_3|CP019860.1_3254195_3255332_-	cd00751, thiolase, Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine	NA|182aa|up_2|CP019860.1_3255363_3255909_-	pfam02632, BioY, BioY family	NA|260aa|up_1|CP019860.1_3256232_3257012_+	NA	NA|143aa|up_0|CP019860.1_3257466_3257895_-	PRK10562, PRK10562, putative acetyltransferase; Provisional	cas2|89aa|down_0|CP019860.1_3259861_3260128_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|327aa|down_1|CP019860.1_3260130_3261111_-	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP	cas4|190aa|down_2|CP019860.1_3261113_3261683_-	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas3|774aa|down_3|CP019860.1_3261679_3264001_-	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	cas5|234aa|down_4|CP019860.1_3264011_3264713_-	cd09658, Cas5_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|305aa|down_5|CP019860.1_3264714_3265629_-	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas8b2|617aa|down_6|CP019860.1_3265630_3267481_-	pfam09706, Cas_CXXC_CXXC, CRISPR-associated protein (Cas_CXXC_CXXC)	cas6|246aa|down_7|CP019860.1_3267486_3268224_-	cd09652, Cas6-I-III, CRISPR/Cas system-associated RAMP superfamily protein Cas6	WYL|296aa|down_8|CP019860.1_3268301_3269189_-	pfam13280, WYL, WYL domain	NA|639aa|down_9|CP019860.1_3269497_3271414_-	pfam02687, FtsX, FtsX-like permease family
GCA_003481965.1_ASM348196v1	CP019860	Clostridioides difficile strain DSM 29632 chromosome, complete genome	18	3683661-3683769	17	CRISPRCasFinder	no		cas14k,csa3,WYL,cas14j,cas3,DEDDh,DinG,c2c9_V-U4,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	AAAAAAGACCTAGAAATTAATCTGAGTCTT	30	0	0	NA	NA	NA	1	1	Orphan	cas14k,csa3,WYL,cas14j,cas3,DEDDh,DinG,c2c9_V-U4,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|116aa|up_9|CP019860.1_3676139_3676487_-,NA|134aa|up_8|CP019860.1_3676480_3676882_-,NA|300aa|up_6|CP019860.1_3677124_3678024_-,NA|67aa|up_4|CP019860.1_3678664_3678865_-,NA|133aa|down_3|CP019860.1_3686221_3686620_-,NA|103aa|down_5|CP019860.1_3687084_3687393_-,NA|63aa|down_6|CP019860.1_3687404_3687593_-,NA|124aa|down_7|CP019860.1_3687595_3687967_-,NA|59aa|down_8|CP019860.1_3687950_3688127_-,NA|97aa|down_9|CP019860.1_3688146_3688437_-	NA|116aa|up_9|CP019860.1_3676139_3676487_-	NA	NA|134aa|up_8|CP019860.1_3676480_3676882_-	NA	NA|78aa|up_7|CP019860.1_3676891_3677125_-	TIGR03752, conj_TIGR03752, integrating conjugative element protein, PFL_4705 family	NA|300aa|up_6|CP019860.1_3677124_3678024_-	NA	NA|188aa|up_5|CP019860.1_3678035_3678599_-	pfam06810, Phage_GP20, Phage minor structural protein GP20	NA|67aa|up_4|CP019860.1_3678664_3678865_-	NA	NA|466aa|up_3|CP019860.1_3678879_3680277_-	pfam15542, Ntox50, Bacterial toxin 50	NA|261aa|up_2|CP019860.1_3680266_3681049_-	pfam05133, Phage_prot_Gp6, Phage portal protein, SPP1 Gp6-like	NA|418aa|up_1|CP019860.1_3681711_3682965_-	COG1783, XtmB, Phage terminase large subunit [General function prediction only]	NA|228aa|up_0|CP019860.1_3682942_3683626_-	COG5484, COG5484, Uncharacterized conserved protein [Function unknown]	NA|161aa|down_0|CP019860.1_3684430_3684913_-	TIGR01636, Transcriptional_activator_rinA, phage transcriptional activator, RinA family	NA|246aa|down_1|CP019860.1_3685024_3685762_-	pfam08346, AntA, AntA/AntB antirepressor	NA|136aa|down_2|CP019860.1_3685824_3686232_-	pfam05866, RusA, Endodeoxyribonuclease RusA	NA|133aa|down_3|CP019860.1_3686221_3686620_-	NA	NA|94aa|down_4|CP019860.1_3686773_3687055_-	pfam12961, DUF3850, Domain of Unknown Function with PDB structure (DUF3850)	NA|103aa|down_5|CP019860.1_3687084_3687393_-	NA	NA|63aa|down_6|CP019860.1_3687404_3687593_-	NA	NA|124aa|down_7|CP019860.1_3687595_3687967_-	NA	NA|59aa|down_8|CP019860.1_3687950_3688127_-	NA	NA|97aa|down_9|CP019860.1_3688146_3688437_-	NA
