assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003457035.1_ASM345703v1	CP020380	Clostridioides difficile strain DSM 102978 chromosome, complete genome	1	31917-32002	1	CRISPRCasFinder	no		cas14j,csa3,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	GTTGGCGCCGTGCTTTAGCACTTT	24	1	1	31941-31978	CP020380.1_4105995-4105958	NA	1	1	Orphan	cas14j,csa3,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|74aa|up_1|CP020380.1_28332_28554_+,NA|138aa|down_0|CP020380.1_39225_39639_+,NA|32aa|down_1|CP020380.1_39648_39744_+	NA|258aa|up_9|CP020380.1_9856_10630_+	TIGR02980, SigBFG, RNA polymerase sigma-70 factor, sigma-B/F/G subfamily	NA|170aa|up_8|CP020380.1_21153_21663_+	COG1827, COG1827, Predicted small molecule binding protein (contains 3H domain) [General function prediction only]	NA|294aa|up_7|CP020380.1_21674_22556_+	PRK10334, PRK10334, small-conductance mechanosensitive channel MscS	NA|424aa|up_6|CP020380.1_23014_24286_+	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|152aa|up_5|CP020380.1_24606_25062_+	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|546aa|up_4|CP020380.1_25532_27170_+	PRK05563, PRK05563, DNA polymerase III subunits gamma and tau; Validated	NA|117aa|up_3|CP020380.1_27228_27579_+	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein	NA|200aa|up_2|CP020380.1_27591_28191_+	PRK00076, recR, recombination protein RecR; Reviewed	NA|74aa|up_1|CP020380.1_28332_28554_+	NA	NA|402aa|up_0|CP020380.1_28624_29830_-	cd17507, GT28_Beta-DGS-like, beta-diglucosyldiacylglycerol synthase and similar proteins	NA|138aa|down_0|CP020380.1_39225_39639_+	NA	NA|32aa|down_1|CP020380.1_39648_39744_+	NA	NA|1144aa|down_2|CP020380.1_39947_43379_+	PRK12999, PRK12999, pyruvate carboxylase; Reviewed	NA|643aa|down_3|CP020380.1_43620_45549_+	PRK12740, PRK12740, elongation factor G-like protein EF-G2	NA|158aa|down_4|CP020380.1_45996_46470_+	COG4463, CtsR, Transcriptional repressor of class III stress genes [Transcription]	NA|165aa|down_5|CP020380.1_46476_46971_+	COG3880, COG3880, Modulator of heat shock repressor CtsR, McsA [Signal transduction    mechanisms]	NA|342aa|down_6|CP020380.1_46986_48012_+	PRK01059, PRK01059, ATP:guanido phosphotransferase; Provisional	NA|816aa|down_7|CP020380.1_47998_50446_+	COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]	NA|458aa|down_8|CP020380.1_50625_51999_+	PRK11823, PRK11823, DNA repair protein RadA; Provisional	NA|357aa|down_9|CP020380.1_52001_53072_+	PRK13482, PRK13482, DNA integrity scanning protein DisA; Provisional
GCA_003457035.1_ASM345703v1	CP020380	Clostridioides difficile strain DSM 102978 chromosome, complete genome	2	128788-128877	2	CRISPRCasFinder	no		cas14j,csa3,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	TGTGCGTTAGCACTTTAAGCAACAGAAT	28	1	4	128816-128849|128816-128849|128816-128849|128816-128849	CP020380.1_146256-146289|CP020380.1_1229318-1229351|CP020380.1_3970034-3970001|CP020380.1_4105983-4105950	NA	1	1	Orphan	cas14j,csa3,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|226aa|down_7|CP020380.1_161106_161784_+	NA|208aa|up_9|CP020380.1_119229_119853_+	PRK05327, rpsD, 30S ribosomal protein S4; Validated	NA|316aa|up_8|CP020380.1_119930_120878_+	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional	NA|114aa|up_7|CP020380.1_120898_121240_+	PRK05591, rplQ, 50S ribosomal protein L17; Validated	NA|278aa|up_6|CP020380.1_121359_122193_+	TIGR04520, ECF_ATPase_1, energy-coupling factor transporter ATPase	NA|289aa|up_5|CP020380.1_122180_123047_+	PRK13637, cbiO, energy-coupling factor transporter ATPase	NA|268aa|up_4|CP020380.1_123040_123844_+	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|244aa|up_3|CP020380.1_123875_124607_+	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|144aa|up_2|CP020380.1_124726_125158_+	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|131aa|up_1|CP020380.1_125186_125579_+	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|235aa|up_0|CP020380.1_126085_126790_+	TIGR02883, spore_cwlD, N-acetylmuramoyl-L-alanine amidase CwlD	NA|395aa|down_0|CP020380.1_139266_140451_-	PRK05764, PRK05764, aspartate aminotransferase; Provisional	NA|784aa|down_1|CP020380.1_140823_143175_+	PRK07111, PRK07111, anaerobic ribonucleoside triphosphate reductase; Provisional	NA|180aa|down_2|CP020380.1_143196_143736_+	TIGR02491, Anaerobic_ribonucleoside-triphosphate_reductase, anaerobic ribonucleoside-triphosphate reductase activating protein	NA|280aa|down_3|CP020380.1_156792_157632_+	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|394aa|down_4|CP020380.1_157628_158810_+	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|301aa|down_5|CP020380.1_159113_160016_+	PRK05805, PRK05805, phosphate butyryltransferase; Validated	NA|360aa|down_6|CP020380.1_160037_161117_+	PRK03011, PRK03011, butyrate kinase; Provisional	NA|226aa|down_7|CP020380.1_161106_161784_+	NA	NA|72aa|down_8|CP020380.1_161826_162042_+	COG2221, DsrA, Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]	NA|360aa|down_9|CP020380.1_162070_163150_+	PRK07119, PRK07119, 2-ketoisovalerate ferredoxin reductase; Validated
GCA_003457035.1_ASM345703v1	CP020380	Clostridioides difficile strain DSM 102978 chromosome, complete genome	3	135678-135767	3	CRISPRCasFinder	no		cas14j,csa3,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	TGTGCGTTAGCACTTTAAGCAACAGAAT	28	1	4	135706-135739|135706-135739|135706-135739|135706-135739	CP020380.1_146256-146289|CP020380.1_1229318-1229351|CP020380.1_3970034-3970001|CP020380.1_4105983-4105950	NA	1	1	Orphan	cas14j,csa3,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|226aa|down_7|CP020380.1_161106_161784_+	NA|208aa|up_9|CP020380.1_119229_119853_+	PRK05327, rpsD, 30S ribosomal protein S4; Validated	NA|316aa|up_8|CP020380.1_119930_120878_+	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional	NA|114aa|up_7|CP020380.1_120898_121240_+	PRK05591, rplQ, 50S ribosomal protein L17; Validated	NA|278aa|up_6|CP020380.1_121359_122193_+	TIGR04520, ECF_ATPase_1, energy-coupling factor transporter ATPase	NA|289aa|up_5|CP020380.1_122180_123047_+	PRK13637, cbiO, energy-coupling factor transporter ATPase	NA|268aa|up_4|CP020380.1_123040_123844_+	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|244aa|up_3|CP020380.1_123875_124607_+	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|144aa|up_2|CP020380.1_124726_125158_+	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|131aa|up_1|CP020380.1_125186_125579_+	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|235aa|up_0|CP020380.1_126085_126790_+	TIGR02883, spore_cwlD, N-acetylmuramoyl-L-alanine amidase CwlD	NA|395aa|down_0|CP020380.1_139266_140451_-	PRK05764, PRK05764, aspartate aminotransferase; Provisional	NA|784aa|down_1|CP020380.1_140823_143175_+	PRK07111, PRK07111, anaerobic ribonucleoside triphosphate reductase; Provisional	NA|180aa|down_2|CP020380.1_143196_143736_+	TIGR02491, Anaerobic_ribonucleoside-triphosphate_reductase, anaerobic ribonucleoside-triphosphate reductase activating protein	NA|280aa|down_3|CP020380.1_156792_157632_+	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|394aa|down_4|CP020380.1_157628_158810_+	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|301aa|down_5|CP020380.1_159113_160016_+	PRK05805, PRK05805, phosphate butyryltransferase; Validated	NA|360aa|down_6|CP020380.1_160037_161117_+	PRK03011, PRK03011, butyrate kinase; Provisional	NA|226aa|down_7|CP020380.1_161106_161784_+	NA	NA|72aa|down_8|CP020380.1_161826_162042_+	COG2221, DsrA, Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]	NA|360aa|down_9|CP020380.1_162070_163150_+	PRK07119, PRK07119, 2-ketoisovalerate ferredoxin reductase; Validated
GCA_003457035.1_ASM345703v1	CP020380	Clostridioides difficile strain DSM 102978 chromosome, complete genome	4	144217-144295	4	CRISPRCasFinder	no		cas14j,csa3,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	TGTTTATAATGTGGATAATATTTAA	25	0	0	NA	NA	NA	1	1	Orphan	cas14j,csa3,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|226aa|down_4|CP020380.1_161106_161784_+	NA|278aa|up_9|CP020380.1_121359_122193_+	TIGR04520, ECF_ATPase_1, energy-coupling factor transporter ATPase	NA|289aa|up_8|CP020380.1_122180_123047_+	PRK13637, cbiO, energy-coupling factor transporter ATPase	NA|268aa|up_7|CP020380.1_123040_123844_+	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|244aa|up_6|CP020380.1_123875_124607_+	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|144aa|up_5|CP020380.1_124726_125158_+	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|131aa|up_4|CP020380.1_125186_125579_+	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|235aa|up_3|CP020380.1_126085_126790_+	TIGR02883, spore_cwlD, N-acetylmuramoyl-L-alanine amidase CwlD	NA|395aa|up_2|CP020380.1_139266_140451_-	PRK05764, PRK05764, aspartate aminotransferase; Provisional	NA|784aa|up_1|CP020380.1_140823_143175_+	PRK07111, PRK07111, anaerobic ribonucleoside triphosphate reductase; Provisional	NA|180aa|up_0|CP020380.1_143196_143736_+	TIGR02491, Anaerobic_ribonucleoside-triphosphate_reductase, anaerobic ribonucleoside-triphosphate reductase activating protein	NA|280aa|down_0|CP020380.1_156792_157632_+	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|394aa|down_1|CP020380.1_157628_158810_+	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|301aa|down_2|CP020380.1_159113_160016_+	PRK05805, PRK05805, phosphate butyryltransferase; Validated	NA|360aa|down_3|CP020380.1_160037_161117_+	PRK03011, PRK03011, butyrate kinase; Provisional	NA|226aa|down_4|CP020380.1_161106_161784_+	NA	NA|72aa|down_5|CP020380.1_161826_162042_+	COG2221, DsrA, Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]	NA|360aa|down_6|CP020380.1_162070_163150_+	PRK07119, PRK07119, 2-ketoisovalerate ferredoxin reductase; Validated	NA|251aa|down_7|CP020380.1_163149_163902_+	cd03375, TPP_OGFOR, Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor	NA|186aa|down_8|CP020380.1_163902_164460_+	pfam01558, POR, Pyruvate ferredoxin/flavodoxin oxidoreductase	NA|449aa|down_9|CP020380.1_164629_165976_+	PRK14316, glmM, phosphoglucosamine mutase; Provisional
GCA_003457035.1_ASM345703v1	CP020380	Clostridioides difficile strain DSM 102978 chromosome, complete genome	5	151683-151772	5	CRISPRCasFinder	no		cas14j,csa3,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	TGTGCGTTAGCACTTTAAGCAACAGAAT	28	1	4	151711-151744|151711-151744|151711-151744|151711-151744	CP020380.1_146256-146289|CP020380.1_1229318-1229351|CP020380.1_3970034-3970001|CP020380.1_4105983-4105950	NA	1	1	Orphan	cas14j,csa3,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|226aa|down_4|CP020380.1_161106_161784_+	NA|278aa|up_9|CP020380.1_121359_122193_+	TIGR04520, ECF_ATPase_1, energy-coupling factor transporter ATPase	NA|289aa|up_8|CP020380.1_122180_123047_+	PRK13637, cbiO, energy-coupling factor transporter ATPase	NA|268aa|up_7|CP020380.1_123040_123844_+	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|244aa|up_6|CP020380.1_123875_124607_+	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|144aa|up_5|CP020380.1_124726_125158_+	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|131aa|up_4|CP020380.1_125186_125579_+	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|235aa|up_3|CP020380.1_126085_126790_+	TIGR02883, spore_cwlD, N-acetylmuramoyl-L-alanine amidase CwlD	NA|395aa|up_2|CP020380.1_139266_140451_-	PRK05764, PRK05764, aspartate aminotransferase; Provisional	NA|784aa|up_1|CP020380.1_140823_143175_+	PRK07111, PRK07111, anaerobic ribonucleoside triphosphate reductase; Provisional	NA|180aa|up_0|CP020380.1_143196_143736_+	TIGR02491, Anaerobic_ribonucleoside-triphosphate_reductase, anaerobic ribonucleoside-triphosphate reductase activating protein	NA|280aa|down_0|CP020380.1_156792_157632_+	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|394aa|down_1|CP020380.1_157628_158810_+	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|301aa|down_2|CP020380.1_159113_160016_+	PRK05805, PRK05805, phosphate butyryltransferase; Validated	NA|360aa|down_3|CP020380.1_160037_161117_+	PRK03011, PRK03011, butyrate kinase; Provisional	NA|226aa|down_4|CP020380.1_161106_161784_+	NA	NA|72aa|down_5|CP020380.1_161826_162042_+	COG2221, DsrA, Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]	NA|360aa|down_6|CP020380.1_162070_163150_+	PRK07119, PRK07119, 2-ketoisovalerate ferredoxin reductase; Validated	NA|251aa|down_7|CP020380.1_163149_163902_+	cd03375, TPP_OGFOR, Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor	NA|186aa|down_8|CP020380.1_163902_164460_+	pfam01558, POR, Pyruvate ferredoxin/flavodoxin oxidoreductase	NA|449aa|down_9|CP020380.1_164629_165976_+	PRK14316, glmM, phosphoglucosamine mutase; Provisional
GCA_003457035.1_ASM345703v1	CP020380	Clostridioides difficile strain DSM 102978 chromosome, complete genome	6	300411-300638	6,1	CRISPRCasFinder,CRT	no		cas14j,csa3,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	GTTTTAGATTAACTATATGGAATGTAAAT,GTTTTAGATTAACTATATGGAATGTAAATT	29,30	0	0	NA	NA	I-A:NA	3,3	3	Orphan	cas14j,csa3,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|116aa|up_9|CP020380.1_295018_295366_+,NA|146aa|up_7|CP020380.1_295783_296221_+,NA|62aa|up_6|CP020380.1_296204_296390_+,NA|53aa|up_2|CP020380.1_299042_299201_+,NA|36aa|up_1|CP020380.1_299577_299685_+,NA|70aa|up_0|CP020380.1_299909_300119_-,NA	NA|116aa|up_9|CP020380.1_295018_295366_+	NA	NA|142aa|up_8|CP020380.1_295365_295791_+	pfam04883, HK97-gp10_like, Bacteriophage HK97-gp10, putative tail-component	NA|146aa|up_7|CP020380.1_295783_296221_+	NA	NA|62aa|up_6|CP020380.1_296204_296390_+	NA	NA|437aa|up_5|CP020380.1_296390_297701_+	pfam04984, Phage_sheath_1, Phage tail sheath protein subtilisin-like domain	NA|157aa|up_4|CP020380.1_297717_298188_+	pfam09393, DUF2001, Phage tail tube protein	NA|147aa|up_3|CP020380.1_298259_298700_+	pfam08890, Phage_TAC_5, Phage XkdN-like tail assembly chaperone protein, TAC	NA|53aa|up_2|CP020380.1_299042_299201_+	NA	NA|36aa|up_1|CP020380.1_299577_299685_+	NA	NA|70aa|up_0|CP020380.1_299909_300119_-	NA	NA|187aa|down_0|CP020380.1_300765_301326_+	pfam00542, Ribosomal_L12, Ribosomal protein L7/L12 C-terminal domain	NA|789aa|down_1|CP020380.1_301401_303768_+	TIGR02675, Mu-like_prophage_FluMu_protein_gp42, tape measure domain	NA|232aa|down_2|CP020380.1_303783_304479_+	PRK11198, PRK11198, LysM domain/BON superfamily protein; Provisional	NA|653aa|down_3|CP020380.1_304471_306430_+	pfam00877, NLPC_P60, NlpC/P60 family	NA|88aa|down_4|CP020380.1_306443_306707_+	pfam10844, DUF2577, Protein of unknown function (DUF2577)	NA|140aa|down_5|CP020380.1_306708_307128_+	pfam10934, DUF2634, Protein of unknown function (DUF2634)	NA|350aa|down_6|CP020380.1_307127_308177_+	pfam04865, Baseplate_J, Baseplate J-like protein	NA|206aa|down_7|CP020380.1_308169_308787_+	pfam10076, DUF2313, Uncharacterized protein conserved in bacteria (DUF2313)	NA|268aa|down_8|CP020380.1_308802_309606_+	pfam12571, DUF3751, Phage tail-collar fibre protein	NA|576aa|down_9|CP020380.1_309622_311350_+	pfam12810, Gly_rich, Glycine rich protein
GCA_003457035.1_ASM345703v1	CP020380	Clostridioides difficile strain DSM 102978 chromosome, complete genome	7	922846-923024	7	CRISPRCasFinder	no	cas14j	cas14j,csa3,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Unclear	AAAAAATAATTAAATTAATTATATATT	27	0	0	NA	NA	NA	2	2	TypeV	cas14j,csa3,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|65aa|up_4|CP020380.1_916354_916549_+,NA	NA|649aa|up_9|CP020380.1_907522_909469_+	cd07410, MPP_CpdB_N, Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain	NA|635aa|up_8|CP020380.1_909871_911776_+	cd07410, MPP_CpdB_N, Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain	NA|274aa|up_7|CP020380.1_913103_913925_-	cd07736, PhnP-like_MBL-fold, phosphodiesterase Escherichia coli PhnP and related proteins; MBL-fold metallo hydrolase domain	NA|273aa|up_6|CP020380.1_914790_915609_-	cd01107, HTH_BmrR, Helix-Turn-Helix DNA binding domain of the BmrR transcription regulator	NA|194aa|up_5|CP020380.1_915776_916358_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|65aa|up_4|CP020380.1_916354_916549_+	NA	NA|581aa|up_3|CP020380.1_917275_919018_-	cd09606, M3B_PepF, Peptidase family M3B, oligopeptidase F (PepF)	NA|459aa|up_2|CP020380.1_919446_920823_+	TIGR00933, Trk_system_potassium_uptake_protein_trkH	NA|224aa|up_1|CP020380.1_921110_921782_+	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]	NA|266aa|up_0|CP020380.1_921970_922768_+	COG0566, SpoU, rRNA methylases [Translation, ribosomal structure and biogenesis]	NA|340aa|down_0|CP020380.1_923311_924331_+	PRK00488, pheS, phenylalanyl-tRNA synthetase subunit alpha; Validated	NA|798aa|down_1|CP020380.1_924347_926741_+	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed	NA|197aa|down_2|CP020380.1_926765_927356_+	pfam05164, ZapA, Cell division protein ZapA	cas14j|370aa|down_3|CP020380.1_928275_929385_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|228aa|down_4|CP020380.1_929537_930221_+	pfam06912, DUF1275, Protein of unknown function (DUF1275)	NA|861aa|down_5|CP020380.1_930516_933099_+	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|193aa|down_6|CP020380.1_933202_933781_+	COG2316, COG2316, Predicted hydrolase (HD superfamily) [General function prediction only]	NA|159aa|down_7|CP020380.1_933814_934291_+	cd03427, MTH1, MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily	NA|274aa|down_8|CP020380.1_934744_935566_+	cd02143, nitroreductase_FeS-like, nitroreductases with an N-terminal iron-sulfur cluster-binding domain	NA|645aa|down_9|CP020380.1_935803_937738_+	cd01007, PBP2_BvgS_HisK_like, The type 2 periplasmic ligand-binding protein domain of the sensor-kinase BvgS and histidine kinase receptors, and related proteins
GCA_003457035.1_ASM345703v1	CP020380	Clostridioides difficile strain DSM 102978 chromosome, complete genome	9	1661699-1661858	9	CRISPRCasFinder	no	DinG	cas14j,csa3,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Type IV-A	GTTTTATATTAACTATGTGGTATGTAAA	28	0	0	NA	NA	I-A	2	2	Orphan	cas14j,csa3,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|183aa|up_5|CP020380.1_1656361_1656910_-,NA|80aa|down_3|CP020380.1_1668993_1669233_+,NA|59aa|down_4|CP020380.1_1669419_1669596_-,NA|32aa|down_6|CP020380.1_1671277_1671373_-	NA|195aa|up_9|CP020380.1_1651548_1652133_-	pfam00882, Zn_dep_PLPC, Zinc dependent phospholipase C	NA|481aa|up_8|CP020380.1_1652332_1653775_-	COG3829, RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]	NA|315aa|up_7|CP020380.1_1654091_1655036_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|312aa|up_6|CP020380.1_1655306_1656242_-	COG1242, COG1242, Predicted Fe-S oxidoreductase [General function prediction only]	NA|183aa|up_5|CP020380.1_1656361_1656910_-	NA	NA|143aa|up_4|CP020380.1_1657061_1657490_+	pfam04657, DMT_YdcZ, Putative inner membrane exporter, YdcZ	NA|217aa|up_3|CP020380.1_1657574_1658225_+	cd01994, Alpha_ANH_like_IV, This is a subfamily of Adenine nucleotide alpha hydrolases superfamily	NA|452aa|up_2|CP020380.1_1658342_1659698_-	cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA	NA|182aa|up_1|CP020380.1_1660240_1660786_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|119aa|up_0|CP020380.1_1660815_1661172_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|578aa|down_0|CP020380.1_1662184_1663918_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|282aa|down_1|CP020380.1_1664157_1665003_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|270aa|down_2|CP020380.1_1668042_1668852_+	cd00592, HTH_MerR-like, Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators	NA|80aa|down_3|CP020380.1_1668993_1669233_+	NA	NA|59aa|down_4|CP020380.1_1669419_1669596_-	NA	NA|136aa|down_5|CP020380.1_1670815_1671223_-	cd01014, nicotinamidase_related, Nicotinamidase_ related amidohydrolases	NA|32aa|down_6|CP020380.1_1671277_1671373_-	NA	NA|45aa|down_7|CP020380.1_1671603_1671738_+	TIGR00232, Transketolase_2, transketolase, bacterial and yeast	NA|262aa|down_8|CP020380.1_1671837_1672623_+	COG3393, COG3393, Predicted acetyltransferase [General function prediction only]	NA|275aa|down_9|CP020380.1_1672719_1673544_-	cd10948, CE4_BsPdaA_like, Catalytic NodB homology domain of Bacillus subtilis polysaccharide deacetylase PdaA, and its bacterial homologs
GCA_003457035.1_ASM345703v1	CP020380	Clostridioides difficile strain DSM 102978 chromosome, complete genome	10	1769637-1769994	1,10,2	PILER-CR,CRISPRCasFinder,CRT	no		cas14j,csa3,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	GTTTTATATTAACTATATGGAATGTAAA,GTTTTATATTAACTATATGGAATGTAAAT,GTTTTATATTAACTATATGGAATGTAAA	28,29,28	0	0	NA	NA	I-A:I-A:I-A	4,5,5	5	Orphan	cas14j,csa3,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|184aa|up_7|CP020380.1_1759543_1760095_+,NA|61aa|up_4|CP020380.1_1763046_1763229_-,NA|54aa|down_0|CP020380.1_1770284_1770446_-,NA|323aa|down_5|CP020380.1_1774915_1775884_+	NA|195aa|up_9|CP020380.1_1757885_1758470_+	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|300aa|up_8|CP020380.1_1758622_1759522_+	TIGR02163, Ferredoxin-type_protein_NapH_homolog, ferredoxin-type protein, NapH/MauN family	NA|184aa|up_7|CP020380.1_1759543_1760095_+	NA	NA|216aa|up_6|CP020380.1_1760261_1760909_-	pfam02589, LUD_dom, LUD domain	NA|305aa|up_5|CP020380.1_1761299_1762214_-	pfam11155, DUF2935, Domain of unknown function (DUF2935)	NA|61aa|up_4|CP020380.1_1763046_1763229_-	NA	NA|283aa|up_3|CP020380.1_1763639_1764488_-	PRK00380, panC, pantoate--beta-alanine ligase; Reviewed	NA|276aa|up_2|CP020380.1_1764506_1765334_-	PRK00311, panB, 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed	NA|299aa|up_1|CP020380.1_1765308_1766205_-	pfam10728, DUF2520, Domain of unknown function (DUF2520)	NA|698aa|up_0|CP020380.1_1766882_1768976_+	cd01948, EAL, EAL domain	NA|54aa|down_0|CP020380.1_1770284_1770446_-	NA	NA|273aa|down_1|CP020380.1_1770652_1771471_+	cd04782, HTH_BltR, Helix-Turn-Helix DNA binding domain of the BltR transcription regulator	NA|707aa|down_2|CP020380.1_1771603_1773724_-	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]	NA|76aa|down_3|CP020380.1_1773749_1773977_-	pfam04023, FeoA, FeoA domain	NA|147aa|down_4|CP020380.1_1774302_1774743_-	COG2153, ElaA, Predicted acyltransferase [General function prediction only]	NA|323aa|down_5|CP020380.1_1774915_1775884_+	NA	NA|403aa|down_6|CP020380.1_1776369_1777578_+	PRK13354, PRK13354, tyrosyl-tRNA synthetase; Provisional	NA|294aa|down_7|CP020380.1_1777638_1778520_-	cd10944, CE4_SmPgdA_like, Catalytic NodB homology domain of Streptococcus mutans polysaccharide deacetylase PgdA, Bacillus subtilis YheN, and similar proteins	NA|305aa|down_8|CP020380.1_1778935_1779850_+	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|182aa|down_9|CP020380.1_1780072_1780618_+	cd01046, Rubrerythrin_like, rubrerythrin-like, diiron-binding domain
GCA_003457035.1_ASM345703v1	CP020380	Clostridioides difficile strain DSM 102978 chromosome, complete genome	11	1945616-1946827	2,11,3	PILER-CR,CRISPRCasFinder,CRT	no		cas14j,csa3,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	GTTTTATATTAACTATGTGGTATGTAAAT,GTTTTATATTAACTATGTGGTATGTAAAT,GTTTTATATTAACTATGTGGTATGTAAAT	29,29,29	2	3	1945976-1946012|1946631-1946667|1946631-1946667	CP020380.1_1312990-1313026|CP020380.1_277982-277946|CP020380.1_1294728-1294692	I-A:I-A:I-A	18,18,18	18	Orphan	cas14j,csa3,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|63aa|down_0|CP020380.1_1947398_1947587_+,NA|59aa|down_4|CP020380.1_1954086_1954263_-,NA|338aa|down_5|CP020380.1_1954837_1955851_+,NA|258aa|down_7|CP020380.1_1956757_1957531_+	NA|266aa|up_9|CP020380.1_1928750_1929548_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|329aa|up_8|CP020380.1_1929857_1930844_-	TIGR00545, Probable_lipoate-protein_ligase_A, lipoyltransferase and lipoate-protein ligase	NA|577aa|up_7|CP020380.1_1931327_1933058_+	COG1757, NhaC, Na+/H+ antiporter [Energy production and conversion]	NA|172aa|up_6|CP020380.1_1933594_1934110_+	pfam13787, HXXEE, Protein of unknown function with HXXEE motif	NA|825aa|up_5|CP020380.1_1934898_1937373_+	PRK00451, PRK00451, aminomethyl-transferring glycine dehydrogenase subunit GcvPA	NA|486aa|up_4|CP020380.1_1937372_1938830_+	PRK04366, PRK04366, aminomethyl-transferring glycine dehydrogenase subunit GcvPB	NA|786aa|up_3|CP020380.1_1939252_1941610_+	cd02609, P-type_ATPase, uncharacterized subfamily of P-type ATPase transporter, similar to uncharacterized Streptococcus pneumoniae exported protein 7, Exp7	NA|106aa|up_2|CP020380.1_1941695_1942013_-	pfam06865, DUF1255, Protein of unknown function (DUF1255)	NA|239aa|up_1|CP020380.1_1942342_1943059_+	pfam08874, DUF1835, Domain of unknown function (DUF1835)	NA|424aa|up_0|CP020380.1_1943740_1945012_-	cd01303, GDEase, Guanine deaminase (GDEase)	NA|63aa|down_0|CP020380.1_1947398_1947587_+	NA	NA|184aa|down_1|CP020380.1_1948223_1948775_-	cd02209, cupin_XRE_C, XRE (Xenobiotic Response Element) family transcriptional regulators, C-terminal cupin domain	NA|615aa|down_2|CP020380.1_1950224_1952069_+	cd08579, GDPD_memb_like, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases	NA|198aa|down_3|CP020380.1_1952389_1952983_+	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates	NA|59aa|down_4|CP020380.1_1954086_1954263_-	NA	NA|338aa|down_5|CP020380.1_1954837_1955851_+	NA	NA|296aa|down_6|CP020380.1_1955864_1956752_+	cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component	NA|258aa|down_7|CP020380.1_1956757_1957531_+	NA	NA|242aa|down_8|CP020380.1_1957642_1958368_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|207aa|down_9|CP020380.1_1959224_1959845_-	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]
GCA_003457035.1_ASM345703v1	CP020380	Clostridioides difficile strain DSM 102978 chromosome, complete genome	12	2814277-2814434	12	CRISPRCasFinder	no	cas14j,cas3,cas5,cas7,cas6	cas14j,csa3,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Unclear	TGAAATCCACTTAGTTAATCTTAAAC	26	0	0	NA	NA	NA	2	2	TypeV	cas14j,csa3,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|492aa|down_3|CP020380.1_2818860_2820336_-	NA|188aa|up_9|CP020380.1_2806662_2807226_-	cd00552, RaiA, RaiA ("ribosome-associated inhibitor A", also known as Protein Y (PY), YfiA, and SpotY,  is a stress-response protein that binds the ribosomal subunit interface and arrests translation by interfering with aminoacyl-tRNA binding to the ribosomal A site	NA|166aa|up_8|CP020380.1_2807418_2807916_-	cd15904, TSPO_MBR, Translocator protein (TSPO)/peripheral-type benzodiazepine receptor (MBR) family	NA|148aa|up_7|CP020380.1_2808026_2808470_-	pfam09424, YqeY, Yqey-like protein	NA|60aa|up_6|CP020380.1_2808499_2808679_-	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|117aa|up_5|CP020380.1_2808841_2809192_-	cd01276, PKCI_related, Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides	NA|433aa|up_4|CP020380.1_2809234_2810533_-	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|91aa|up_3|CP020380.1_2810534_2810807_-	PRK11713, PRK11713, 16S ribosomal RNA methyltransferase RsmE; Provisional	cas14j|370aa|up_2|CP020380.1_2811049_2812159_-	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|121aa|up_1|CP020380.1_2812808_2813171_-	PRK11713, PRK11713, 16S ribosomal RNA methyltransferase RsmE; Provisional	NA|316aa|up_0|CP020380.1_2813189_2814137_-	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	cas3|803aa|down_0|CP020380.1_2814577_2816986_-	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	cas5|266aa|down_1|CP020380.1_2817012_2817810_-	cd09658, Cas5_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|339aa|down_2|CP020380.1_2817825_2818842_-	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	NA|492aa|down_3|CP020380.1_2818860_2820336_-	NA	cas6|246aa|down_4|CP020380.1_2820340_2821078_-	cd09652, Cas6-I-III, CRISPR/Cas system-associated RAMP superfamily protein Cas6	NA|370aa|down_5|CP020380.1_2821335_2822445_+	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA|256aa|down_6|CP020380.1_2822474_2823242_+	pfam13556, HTH_30, PucR C-terminal helix-turn-helix domain	NA|458aa|down_7|CP020380.1_2823429_2824803_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|312aa|down_8|CP020380.1_2824838_2825774_-	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|385aa|down_9|CP020380.1_2826736_2827891_-	PRK10767, PRK10767, chaperone protein DnaJ; Provisional
GCA_003457035.1_ASM345703v1	CP020380	Clostridioides difficile strain DSM 102978 chromosome, complete genome	13	2895008-2895235	3,13,4	PILER-CR,CRISPRCasFinder,CRT	no		cas14j,csa3,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	GTTTTATATTAACTAAGTGGTATGTAAAT,ATTTACATACCACTTAGTTAATATAAAACA,ATTTACATACCACTTAGTTAATATAAAAC	29,30,29	0	0	NA	NA	I-A:I-A:I-A	3,3,3	3	Orphan	cas14j,csa3,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|53aa|down_0|CP020380.1_2895527_2895686_-	NA|240aa|up_9|CP020380.1_2883295_2884015_-	pfam01841, Transglut_core, Transglutaminase-like superfamily	NA|238aa|up_8|CP020380.1_2884061_2884775_-	COG2169, Ada, Adenosine deaminase [Nucleotide transport and metabolism]	NA|451aa|up_7|CP020380.1_2884950_2886303_-	cd05298, GH4_GlvA_pagL_like, Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases	NA|517aa|up_6|CP020380.1_2886349_2887900_-	TIGR02005, PTS-IIBC-alpha, PTS system, alpha-glucoside-specific IIBC component	NA|272aa|up_5|CP020380.1_2887952_2888768_-	PRK09772, PRK09772, transcriptional antiterminator BglG; Provisional	NA|161aa|up_4|CP020380.1_2888788_2889271_-	pfam00358, PTS_EIIA_1, phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1	NA|127aa|up_3|CP020380.1_2889554_2889935_-	TIGR00004, RutC_family_protein, reactive intermediate/imine deaminase	NA|406aa|up_2|CP020380.1_2890029_2891247_-	PRK08198, PRK08198, threonine dehydratase; Provisional	NA|543aa|up_1|CP020380.1_2891905_2893534_+	TIGR03801, For_A_Pyridoxal-5-_Phosphate, aspartate 4-decarboxylase	NA|332aa|up_0|CP020380.1_2893654_2894650_+	cd08964, L-asparaginase_II, Type II (periplasmic) bacterial L-asparaginase	NA|53aa|down_0|CP020380.1_2895527_2895686_-	NA	NA|807aa|down_1|CP020380.1_2896107_2898528_-	PRK00390, leuS, leucyl-tRNA synthetase; Validated	NA|117aa|down_2|CP020380.1_2898881_2899232_-	pfam02410, RsfS, Ribosomal silencing factor during starvation	NA|191aa|down_3|CP020380.1_2899348_2899921_-	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]	NA|230aa|down_4|CP020380.1_2899921_2900611_-	PRK00071, nadD, nicotinate-nucleotide adenylyltransferase	NA|213aa|down_5|CP020380.1_2900886_2901525_+	PRK00117, recX, recombination regulator RecX; Reviewed	NA|668aa|down_6|CP020380.1_2901677_2903681_+	PLN02447, PLN02447, 1,4-alpha-glucan-branching enzyme	NA|104aa|down_7|CP020380.1_2903807_2904119_-	pfam03992, ABM, Antibiotic biosynthesis monooxygenase	NA|273aa|down_8|CP020380.1_2904196_2905015_-	pfam12833, HTH_18, Helix-turn-helix domain	NA|175aa|down_9|CP020380.1_2905114_2905639_-	pfam07155, ECF-ribofla_trS, ECF-type riboflavin transporter, S component
GCA_003457035.1_ASM345703v1	CP020380	Clostridioides difficile strain DSM 102978 chromosome, complete genome	14	3108072-3108562	14,5,4	CRISPRCasFinder,CRT,PILER-CR	no		cas14j,csa3,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	ATTTACATTCCATATAGTTAATCTAAAAC,ATTTACATTCCATATAGTTAATCTAAAAC,GTTTTAGATTAACTATATGGAATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	7,7,5	7	Orphan	cas14j,csa3,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|98aa|up_9|CP020380.1_3100072_3100366_-,NA|206aa|up_7|CP020380.1_3102079_3102697_-,NA|122aa|up_2|CP020380.1_3105433_3105799_-,NA|321aa|up_1|CP020380.1_3105791_3106754_-,NA|59aa|down_0|CP020380.1_3108803_3108980_-,NA|68aa|down_8|CP020380.1_3118797_3119001_-,NA|275aa|down_9|CP020380.1_3119013_3119838_-	NA|98aa|up_9|CP020380.1_3100072_3100366_-	NA	NA|561aa|up_8|CP020380.1_3100382_3102065_-	pfam12810, Gly_rich, Glycine rich protein	NA|206aa|up_7|CP020380.1_3102079_3102697_-	NA	NA|127aa|up_6|CP020380.1_3102708_3103089_-	pfam12571, DUF3751, Phage tail-collar fibre protein	NA|257aa|up_5|CP020380.1_3103089_3103860_-	pfam10076, DUF2313, Uncharacterized protein conserved in bacteria (DUF2313)	NA|379aa|up_4|CP020380.1_3103856_3104993_-	pfam04865, Baseplate_J, Baseplate J-like protein	NA|154aa|up_3|CP020380.1_3104997_3105459_-	pfam10934, DUF2634, Protein of unknown function (DUF2634)	NA|122aa|up_2|CP020380.1_3105433_3105799_-	NA	NA|321aa|up_1|CP020380.1_3105791_3106754_-	NA	NA|224aa|up_0|CP020380.1_3106750_3107422_-	PRK11198, PRK11198, LysM domain/BON superfamily protein; Provisional	NA|59aa|down_0|CP020380.1_3108803_3108980_-	NA	NA|289aa|down_1|CP020380.1_3109039_3109906_-	smart01040, Bro-N, BRO family, N-terminal domain	NA|265aa|down_2|CP020380.1_3110682_3111477_-	PRK12704, PRK12704, phosphodiesterase; Provisional	NA|1087aa|down_3|CP020380.1_3111556_3114817_-	TIGR01760, COG5283:_Phage-related_tail_protein, phage tail tape measure protein, TP901 family, core region	NA|366aa|down_4|CP020380.1_3115109_3116207_-	TIGR01760, COG5283:_Phage-related_tail_protein, phage tail tape measure protein, TP901 family, core region	NA|158aa|down_5|CP020380.1_3116387_3116861_-	pfam08890, Phage_TAC_5, Phage XkdN-like tail assembly chaperone protein, TAC	NA|141aa|down_6|CP020380.1_3116937_3117360_-	pfam09393, DUF2001, Phage tail tube protein	NA|474aa|down_7|CP020380.1_3117374_3118796_-	pfam04984, Phage_sheath_1, Phage tail sheath protein subtilisin-like domain	NA|68aa|down_8|CP020380.1_3118797_3119001_-	NA	NA|275aa|down_9|CP020380.1_3119013_3119838_-	NA
GCA_003457035.1_ASM345703v1	CP020380	Clostridioides difficile strain DSM 102978 chromosome, complete genome	15	3110365-3110588	15,6	CRISPRCasFinder,CRT	no		cas14j,csa3,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	TTTTAAATACCACTTAGTTAATATAAA,ATACCACTTAGTTAATATAAAA	27,22	0	0	NA	NA	NA:NA	3,3	3	Orphan	cas14j,csa3,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|206aa|up_9|CP020380.1_3102079_3102697_-,NA|122aa|up_4|CP020380.1_3105433_3105799_-,NA|321aa|up_3|CP020380.1_3105791_3106754_-,NA|59aa|up_1|CP020380.1_3108803_3108980_-,NA|68aa|down_6|CP020380.1_3118797_3119001_-,NA|275aa|down_7|CP020380.1_3119013_3119838_-,NA|137aa|down_8|CP020380.1_3119839_3120250_-,NA|128aa|down_9|CP020380.1_3120260_3120644_-	NA|206aa|up_9|CP020380.1_3102079_3102697_-	NA	NA|127aa|up_8|CP020380.1_3102708_3103089_-	pfam12571, DUF3751, Phage tail-collar fibre protein	NA|257aa|up_7|CP020380.1_3103089_3103860_-	pfam10076, DUF2313, Uncharacterized protein conserved in bacteria (DUF2313)	NA|379aa|up_6|CP020380.1_3103856_3104993_-	pfam04865, Baseplate_J, Baseplate J-like protein	NA|154aa|up_5|CP020380.1_3104997_3105459_-	pfam10934, DUF2634, Protein of unknown function (DUF2634)	NA|122aa|up_4|CP020380.1_3105433_3105799_-	NA	NA|321aa|up_3|CP020380.1_3105791_3106754_-	NA	NA|224aa|up_2|CP020380.1_3106750_3107422_-	PRK11198, PRK11198, LysM domain/BON superfamily protein; Provisional	NA|59aa|up_1|CP020380.1_3108803_3108980_-	NA	NA|289aa|up_0|CP020380.1_3109039_3109906_-	smart01040, Bro-N, BRO family, N-terminal domain	NA|265aa|down_0|CP020380.1_3110682_3111477_-	PRK12704, PRK12704, phosphodiesterase; Provisional	NA|1087aa|down_1|CP020380.1_3111556_3114817_-	TIGR01760, COG5283:_Phage-related_tail_protein, phage tail tape measure protein, TP901 family, core region	NA|366aa|down_2|CP020380.1_3115109_3116207_-	TIGR01760, COG5283:_Phage-related_tail_protein, phage tail tape measure protein, TP901 family, core region	NA|158aa|down_3|CP020380.1_3116387_3116861_-	pfam08890, Phage_TAC_5, Phage XkdN-like tail assembly chaperone protein, TAC	NA|141aa|down_4|CP020380.1_3116937_3117360_-	pfam09393, DUF2001, Phage tail tube protein	NA|474aa|down_5|CP020380.1_3117374_3118796_-	pfam04984, Phage_sheath_1, Phage tail sheath protein subtilisin-like domain	NA|68aa|down_6|CP020380.1_3118797_3119001_-	NA	NA|275aa|down_7|CP020380.1_3119013_3119838_-	NA	NA|137aa|down_8|CP020380.1_3119839_3120250_-	NA	NA|128aa|down_9|CP020380.1_3120260_3120644_-	NA
GCA_003457035.1_ASM345703v1	CP020380	Clostridioides difficile strain DSM 102978 chromosome, complete genome	20	3460709-3463696	20,7,5	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6,WYL	cas14j,csa3,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Unclear	ATTTACATACCACTTAGTTAATATAAAAC,ATTTACATACCACTTAGTTAATATAAAAC,GTTTTATATTAACTAAGTGGTATGTAAA	29,29,28	5	6	3462975-3463011|3462975-3463011|3463041-3463077|3463239-3463274|3463041-3463078|3463239-3463275	CP020380.1_315963-315999|CP020380.1_1332244-1332280|CP020380.1_272933-272969|CP020380.1_287197-287162|CP020380.1_272933-272970|CP020380.1_287197-287161	I-A:I-A:I-A	45,45,42	45	Unclear	cas14j,csa3,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|67aa|up_7|CP020380.1_3453589_3453790_+,NA|260aa|up_1|CP020380.1_3458975_3459755_+,NA	NA|221aa|up_9|CP020380.1_3447024_3447687_-	COG3382, COG3382, Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta [General function prediction only]	NA|885aa|up_8|CP020380.1_3450432_3453087_-	PRK13805, PRK13805, bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional	NA|67aa|up_7|CP020380.1_3453589_3453790_+	NA	NA|197aa|up_6|CP020380.1_3453996_3454587_-	PRK08305, spoVFB, dipicolinate synthase subunit B; Reviewed	NA|293aa|up_5|CP020380.1_3454589_3455468_-	PRK08306, PRK08306, dipicolinate synthase subunit DpsA	NA|464aa|up_4|CP020380.1_3455543_3456935_-	cd17633, AFD_YhfT-like, fatty acid-CoA ligase VraA	NA|379aa|up_3|CP020380.1_3456938_3458075_-	cd00751, thiolase, Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine	NA|182aa|up_2|CP020380.1_3458106_3458652_-	pfam02632, BioY, BioY family	NA|260aa|up_1|CP020380.1_3458975_3459755_+	NA	NA|143aa|up_0|CP020380.1_3460219_3460648_-	PRK10562, PRK10562, putative acetyltransferase; Provisional	cas2|89aa|down_0|CP020380.1_3463879_3464146_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|327aa|down_1|CP020380.1_3464148_3465129_-	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP	cas4|190aa|down_2|CP020380.1_3465131_3465701_-	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas3|774aa|down_3|CP020380.1_3465697_3468019_-	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	cas5|234aa|down_4|CP020380.1_3468029_3468731_-	cd09658, Cas5_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|305aa|down_5|CP020380.1_3468732_3469647_-	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas8b2|617aa|down_6|CP020380.1_3469648_3471499_-	pfam09706, Cas_CXXC_CXXC, CRISPR-associated protein (Cas_CXXC_CXXC)	cas6|246aa|down_7|CP020380.1_3471504_3472242_-	cd09652, Cas6-I-III, CRISPR/Cas system-associated RAMP superfamily protein Cas6	WYL|318aa|down_8|CP020380.1_3472319_3473273_-	pfam13280, WYL, WYL domain	NA|639aa|down_9|CP020380.1_3473515_3475432_-	pfam02687, FtsX, FtsX-like permease family
GCA_003457035.1_ASM345703v1	CP020380	Clostridioides difficile strain DSM 102978 chromosome, complete genome	21	3744200-3744295	21	CRISPRCasFinder	no		cas14j,csa3,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	TAAATTAATTTTCTATACTTCCTAAATTA	29	0	0	NA	NA	NA	1	1	Orphan	cas14j,csa3,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|41aa|up_6|CP020380.1_3739151_3739274_-,NA|77aa|up_2|CP020380.1_3742282_3742513_-,NA|83aa|up_0|CP020380.1_3743780_3744029_+,NA	NA|338aa|up_9|CP020380.1_3736265_3737279_-	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein	NA|343aa|up_8|CP020380.1_3737281_3738310_-	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein	NA|282aa|up_7|CP020380.1_3738309_3739155_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|41aa|up_6|CP020380.1_3739151_3739274_-	NA	NA|377aa|up_5|CP020380.1_3739586_3740717_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|224aa|up_4|CP020380.1_3740713_3741385_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|217aa|up_3|CP020380.1_3741575_3742226_-	TIGR03592, yidC_oxa1_cterm, membrane protein insertase, YidC/Oxa1 family, C-terminal domain	NA|77aa|up_2|CP020380.1_3742282_3742513_-	NA	NA|198aa|up_1|CP020380.1_3743069_3743663_+	cd02136, PnbA_NfnB-like, nitroreductase similar to Mycobacterium smegmatis NfnB	NA|83aa|up_0|CP020380.1_3743780_3744029_+	NA	NA|468aa|down_0|CP020380.1_3744343_3745747_-	cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA	NA|154aa|down_1|CP020380.1_3745730_3746192_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|172aa|down_2|CP020380.1_3746538_3747054_+	COG1695, COG1695, Predicted transcriptional regulators [Transcription]	NA|168aa|down_3|CP020380.1_3747102_3747606_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|217aa|down_4|CP020380.1_3747602_3748253_+	pfam02525, Flavodoxin_2, Flavodoxin-like fold	NA|260aa|down_5|CP020380.1_3748387_3749167_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|84aa|down_6|CP020380.1_3749283_3749535_-	pfam12636, DUF3781, Protein of unknown function (DUF3781)	NA|290aa|down_7|CP020380.1_3749728_3750598_-	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|254aa|down_8|CP020380.1_3750935_3751697_-	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|512aa|down_9|CP020380.1_3751712_3753248_-	cd13612, PBP2_ProWX, Substrate-binding protein ProWX of ABC-type osmoregulated transporter and its related proteins; the type 2 periplasmic-binding protein fold
GCA_003457035.1_ASM345703v1	CP020380	Clostridioides difficile strain DSM 102978 chromosome, complete genome	22	3771110-3771343	8	CRT	no		cas14j,csa3,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	CCTGTTGGNCCTGTTANTCCATTTGCT	27	2	2	3771137-3771154|3771182-3771208	CP020380.1_3771083-3771100|CP020380.1_3909103-3909129	NA	4	4	Orphan	cas14j,csa3,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|46aa|down_2|CP020380.1_3774128_3774266_+	NA|82aa|up_9|CP020380.1_3759511_3759757_-	pfam00269, SASP, Small, acid-soluble spore proteins, alpha/beta type	NA|373aa|up_8|CP020380.1_3759887_3761006_-	cd05670, M20_Acy1_YkuR-like, M20 Peptidase aminoacyclase-1 YkuR-like proteins, including YkuR and Ama/HipO/HyuC proteins	NA|398aa|up_7|CP020380.1_3761211_3762405_-	TIGR00720, hypothetical_protein_NEICINOT_00681, L-serine dehydratase, iron-sulfur-dependent, single chain form	NA|294aa|up_6|CP020380.1_3762727_3763609_+	PRK03170, PRK03170, dihydrodipicolinate synthase; Provisional	NA|334aa|up_5|CP020380.1_3764038_3765040_+	PRK14874, PRK14874, aspartate-semialdehyde dehydrogenase; Provisional	NA|296aa|up_4|CP020380.1_3765156_3766044_+	PRK03170, PRK03170, dihydrodipicolinate synthase; Provisional	NA|250aa|up_3|CP020380.1_3766110_3766860_+	PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional	NA|239aa|up_2|CP020380.1_3767083_3767800_+	TIGR03532, DapD_Ac, 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase	NA|330aa|up_1|CP020380.1_3768217_3769207_-	cd03402, SPFH_like_u2, Uncharacterized family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily	NA|252aa|up_0|CP020380.1_3769646_3770402_+	PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional	NA|180aa|down_0|CP020380.1_3771741_3772281_-	COG0634, Hpt, Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]	NA|436aa|down_1|CP020380.1_3772608_3773916_-	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism]	NA|46aa|down_2|CP020380.1_3774128_3774266_+	NA	NA|589aa|down_3|CP020380.1_3774339_3776106_-	COG3829, RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]	NA|190aa|down_4|CP020380.1_3776326_3776896_-	COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]	NA|212aa|down_5|CP020380.1_3777079_3777715_-	PRK05813, PRK05813, single-stranded DNA-binding protein; Provisional	NA|294aa|down_6|CP020380.1_3778381_3779263_-	pfam01925, TauE, Sulfite exporter TauE/SafE	NA|336aa|down_7|CP020380.1_3779382_3780390_-	PRK13969, PRK13969, proline racemase; Provisional	NA|156aa|down_8|CP020380.1_3780909_3781377_-	TIGR04480, D-proline_reductase_PrdA_proprotein, D-proline reductase (dithiol), PrdA proprotein	NA|253aa|down_9|CP020380.1_3781391_3782150_-	TIGR04482, D_pro_red_PrdD, proline reductase cluster protein PrdD
GCA_003457035.1_ASM345703v1	CP020380	Clostridioides difficile strain DSM 102978 chromosome, complete genome	23	3830954-3831599	22,9,6	CRISPRCasFinder,CRT,PILER-CR	no		cas14j,csa3,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	AATTTACATTCCATATAGTTAATATAAAAC,TTTACATTCCANATAGTTAATATAAAA,ATTTTATATTAACTAAGTGGTATGTAAA	30,27,28	1	1	3831049-3831083	CP020380.1_3112904-3112870	I-A:I-A:I-A	9,9,2	9	Orphan	cas14j,csa3,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|122aa|up_6|CP020380.1_3826750_3827116_-,NA|321aa|up_5|CP020380.1_3827108_3828071_-,NA|53aa|up_3|CP020380.1_3829078_3829237_-,NA|68aa|up_2|CP020380.1_3829411_3829615_-,NA|59aa|up_0|CP020380.1_3830618_3830795_-,NA|53aa|down_0|CP020380.1_3831884_3832043_-	NA|257aa|up_9|CP020380.1_3824409_3825180_-	pfam10076, DUF2313, Uncharacterized protein conserved in bacteria (DUF2313)	NA|378aa|up_8|CP020380.1_3825176_3826310_-	pfam04865, Baseplate_J, Baseplate J-like protein	NA|154aa|up_7|CP020380.1_3826314_3826776_-	pfam10934, DUF2634, Protein of unknown function (DUF2634)	NA|122aa|up_6|CP020380.1_3826750_3827116_-	NA	NA|321aa|up_5|CP020380.1_3827108_3828071_-	NA	NA|224aa|up_4|CP020380.1_3828067_3828739_-	PRK11198, PRK11198, LysM domain/BON superfamily protein; Provisional	NA|53aa|up_3|CP020380.1_3829078_3829237_-	NA	NA|68aa|up_2|CP020380.1_3829411_3829615_-	NA	NA|273aa|up_1|CP020380.1_3829674_3830493_-	COG3617, COG3617, Prophage antirepressor [Transcription]	NA|59aa|up_0|CP020380.1_3830618_3830795_-	NA	NA|53aa|down_0|CP020380.1_3831884_3832043_-	NA	NA|134aa|down_1|CP020380.1_3832261_3832663_+	pfam15919, HicB_lk_antitox, HicB_like antitoxin of bacterial toxin-antitoxin system	NA|364aa|down_2|CP020380.1_3832731_3833823_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|227aa|down_3|CP020380.1_3834001_3834682_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|659aa|down_4|CP020380.1_3834731_3836708_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|226aa|down_5|CP020380.1_3836818_3837496_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|281aa|down_6|CP020380.1_3838390_3839233_-	cd13653, PBP2_phosphate_like_1, Substrate binding domain of putative ABC-type phosphate transporter, a member of the type 2 periplasmic binding fold superfamily	NA|595aa|down_7|CP020380.1_3839484_3841269_-	cd09608, M3B_PepF, Peptidase family M3B, oligopeptidase F (PepF)	NA|222aa|down_8|CP020380.1_3841334_3842000_-	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|68aa|down_9|CP020380.1_3842150_3842354_-	pfam09388, SpoOE-like, Spo0E like sporulation regulatory protein
