assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003457015.1_ASM345701v1	CP020379	Clostridioides difficile strain DSM 102860 chromosome, complete genome	1	31917-32002	1	CRISPRCasFinder	no		cas14j,csa3,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	GTTGGCGCCGTGCTTTAGCACTTT	24	1	1	31941-31978	CP020379.1_4105997-4105960	NA	1	1	Orphan	cas14j,csa3,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|74aa|up_1|CP020379.1_28332_28554_+,NA|138aa|down_0|CP020379.1_39225_39639_+,NA|32aa|down_1|CP020379.1_39648_39744_+	NA|258aa|up_9|CP020379.1_9856_10630_+	TIGR02980, SigBFG, RNA polymerase sigma-70 factor, sigma-B/F/G subfamily	NA|170aa|up_8|CP020379.1_21153_21663_+	COG1827, COG1827, Predicted small molecule binding protein (contains 3H domain) [General function prediction only]	NA|294aa|up_7|CP020379.1_21674_22556_+	PRK10334, PRK10334, small-conductance mechanosensitive channel MscS	NA|424aa|up_6|CP020379.1_23014_24286_+	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|152aa|up_5|CP020379.1_24606_25062_+	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|546aa|up_4|CP020379.1_25532_27170_+	PRK05563, PRK05563, DNA polymerase III subunits gamma and tau; Validated	NA|117aa|up_3|CP020379.1_27228_27579_+	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein	NA|200aa|up_2|CP020379.1_27591_28191_+	PRK00076, recR, recombination protein RecR; Reviewed	NA|74aa|up_1|CP020379.1_28332_28554_+	NA	NA|402aa|up_0|CP020379.1_28624_29830_-	cd17507, GT28_Beta-DGS-like, beta-diglucosyldiacylglycerol synthase and similar proteins	NA|138aa|down_0|CP020379.1_39225_39639_+	NA	NA|32aa|down_1|CP020379.1_39648_39744_+	NA	NA|1144aa|down_2|CP020379.1_39947_43379_+	PRK12999, PRK12999, pyruvate carboxylase; Reviewed	NA|643aa|down_3|CP020379.1_43620_45549_+	PRK12740, PRK12740, elongation factor G-like protein EF-G2	NA|158aa|down_4|CP020379.1_45996_46470_+	COG4463, CtsR, Transcriptional repressor of class III stress genes [Transcription]	NA|165aa|down_5|CP020379.1_46476_46971_+	COG3880, COG3880, Modulator of heat shock repressor CtsR, McsA [Signal transduction    mechanisms]	NA|342aa|down_6|CP020379.1_46986_48012_+	PRK01059, PRK01059, ATP:guanido phosphotransferase; Provisional	NA|816aa|down_7|CP020379.1_47998_50446_+	COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]	NA|458aa|down_8|CP020379.1_50625_51999_+	PRK11823, PRK11823, DNA repair protein RadA; Provisional	NA|357aa|down_9|CP020379.1_52001_53072_+	PRK13482, PRK13482, DNA integrity scanning protein DisA; Provisional
GCA_003457015.1_ASM345701v1	CP020379	Clostridioides difficile strain DSM 102860 chromosome, complete genome	2	128788-128877	2	CRISPRCasFinder	no		cas14j,csa3,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	TGTGCGTTAGCACTTTAAGCAACAGAAT	28	1	4	128816-128849|128816-128849|128816-128849|128816-128849	CP020379.1_146256-146289|CP020379.1_1229325-1229358|CP020379.1_3970036-3970003|CP020379.1_4105985-4105952	NA	1	1	Orphan	cas14j,csa3,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|226aa|down_7|CP020379.1_161106_161784_+	NA|208aa|up_9|CP020379.1_119229_119853_+	PRK05327, rpsD, 30S ribosomal protein S4; Validated	NA|316aa|up_8|CP020379.1_119930_120878_+	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional	NA|114aa|up_7|CP020379.1_120898_121240_+	PRK05591, rplQ, 50S ribosomal protein L17; Validated	NA|278aa|up_6|CP020379.1_121359_122193_+	TIGR04520, ECF_ATPase_1, energy-coupling factor transporter ATPase	NA|289aa|up_5|CP020379.1_122180_123047_+	PRK13637, cbiO, energy-coupling factor transporter ATPase	NA|268aa|up_4|CP020379.1_123040_123844_+	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|244aa|up_3|CP020379.1_123875_124607_+	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|144aa|up_2|CP020379.1_124726_125158_+	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|131aa|up_1|CP020379.1_125186_125579_+	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|235aa|up_0|CP020379.1_126085_126790_+	TIGR02883, spore_cwlD, N-acetylmuramoyl-L-alanine amidase CwlD	NA|395aa|down_0|CP020379.1_139266_140451_-	PRK05764, PRK05764, aspartate aminotransferase; Provisional	NA|784aa|down_1|CP020379.1_140823_143175_+	PRK07111, PRK07111, anaerobic ribonucleoside triphosphate reductase; Provisional	NA|180aa|down_2|CP020379.1_143196_143736_+	TIGR02491, Anaerobic_ribonucleoside-triphosphate_reductase, anaerobic ribonucleoside-triphosphate reductase activating protein	NA|280aa|down_3|CP020379.1_156792_157632_+	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|394aa|down_4|CP020379.1_157628_158810_+	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|301aa|down_5|CP020379.1_159113_160016_+	PRK05805, PRK05805, phosphate butyryltransferase; Validated	NA|360aa|down_6|CP020379.1_160037_161117_+	PRK03011, PRK03011, butyrate kinase; Provisional	NA|226aa|down_7|CP020379.1_161106_161784_+	NA	NA|72aa|down_8|CP020379.1_161826_162042_+	COG2221, DsrA, Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]	NA|360aa|down_9|CP020379.1_162070_163150_+	PRK07119, PRK07119, 2-ketoisovalerate ferredoxin reductase; Validated
GCA_003457015.1_ASM345701v1	CP020379	Clostridioides difficile strain DSM 102860 chromosome, complete genome	3	135678-135767	3	CRISPRCasFinder	no		cas14j,csa3,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	TGTGCGTTAGCACTTTAAGCAACAGAAT	28	1	4	135706-135739|135706-135739|135706-135739|135706-135739	CP020379.1_146256-146289|CP020379.1_1229325-1229358|CP020379.1_3970036-3970003|CP020379.1_4105985-4105952	NA	1	1	Orphan	cas14j,csa3,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|226aa|down_7|CP020379.1_161106_161784_+	NA|208aa|up_9|CP020379.1_119229_119853_+	PRK05327, rpsD, 30S ribosomal protein S4; Validated	NA|316aa|up_8|CP020379.1_119930_120878_+	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional	NA|114aa|up_7|CP020379.1_120898_121240_+	PRK05591, rplQ, 50S ribosomal protein L17; Validated	NA|278aa|up_6|CP020379.1_121359_122193_+	TIGR04520, ECF_ATPase_1, energy-coupling factor transporter ATPase	NA|289aa|up_5|CP020379.1_122180_123047_+	PRK13637, cbiO, energy-coupling factor transporter ATPase	NA|268aa|up_4|CP020379.1_123040_123844_+	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|244aa|up_3|CP020379.1_123875_124607_+	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|144aa|up_2|CP020379.1_124726_125158_+	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|131aa|up_1|CP020379.1_125186_125579_+	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|235aa|up_0|CP020379.1_126085_126790_+	TIGR02883, spore_cwlD, N-acetylmuramoyl-L-alanine amidase CwlD	NA|395aa|down_0|CP020379.1_139266_140451_-	PRK05764, PRK05764, aspartate aminotransferase; Provisional	NA|784aa|down_1|CP020379.1_140823_143175_+	PRK07111, PRK07111, anaerobic ribonucleoside triphosphate reductase; Provisional	NA|180aa|down_2|CP020379.1_143196_143736_+	TIGR02491, Anaerobic_ribonucleoside-triphosphate_reductase, anaerobic ribonucleoside-triphosphate reductase activating protein	NA|280aa|down_3|CP020379.1_156792_157632_+	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|394aa|down_4|CP020379.1_157628_158810_+	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|301aa|down_5|CP020379.1_159113_160016_+	PRK05805, PRK05805, phosphate butyryltransferase; Validated	NA|360aa|down_6|CP020379.1_160037_161117_+	PRK03011, PRK03011, butyrate kinase; Provisional	NA|226aa|down_7|CP020379.1_161106_161784_+	NA	NA|72aa|down_8|CP020379.1_161826_162042_+	COG2221, DsrA, Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]	NA|360aa|down_9|CP020379.1_162070_163150_+	PRK07119, PRK07119, 2-ketoisovalerate ferredoxin reductase; Validated
GCA_003457015.1_ASM345701v1	CP020379	Clostridioides difficile strain DSM 102860 chromosome, complete genome	4	144217-144295	4	CRISPRCasFinder	no		cas14j,csa3,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	TGTTTATAATGTGGATAATATTTAA	25	0	0	NA	NA	NA	1	1	Orphan	cas14j,csa3,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|226aa|down_4|CP020379.1_161106_161784_+	NA|278aa|up_9|CP020379.1_121359_122193_+	TIGR04520, ECF_ATPase_1, energy-coupling factor transporter ATPase	NA|289aa|up_8|CP020379.1_122180_123047_+	PRK13637, cbiO, energy-coupling factor transporter ATPase	NA|268aa|up_7|CP020379.1_123040_123844_+	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|244aa|up_6|CP020379.1_123875_124607_+	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|144aa|up_5|CP020379.1_124726_125158_+	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|131aa|up_4|CP020379.1_125186_125579_+	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|235aa|up_3|CP020379.1_126085_126790_+	TIGR02883, spore_cwlD, N-acetylmuramoyl-L-alanine amidase CwlD	NA|395aa|up_2|CP020379.1_139266_140451_-	PRK05764, PRK05764, aspartate aminotransferase; Provisional	NA|784aa|up_1|CP020379.1_140823_143175_+	PRK07111, PRK07111, anaerobic ribonucleoside triphosphate reductase; Provisional	NA|180aa|up_0|CP020379.1_143196_143736_+	TIGR02491, Anaerobic_ribonucleoside-triphosphate_reductase, anaerobic ribonucleoside-triphosphate reductase activating protein	NA|280aa|down_0|CP020379.1_156792_157632_+	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|394aa|down_1|CP020379.1_157628_158810_+	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|301aa|down_2|CP020379.1_159113_160016_+	PRK05805, PRK05805, phosphate butyryltransferase; Validated	NA|360aa|down_3|CP020379.1_160037_161117_+	PRK03011, PRK03011, butyrate kinase; Provisional	NA|226aa|down_4|CP020379.1_161106_161784_+	NA	NA|72aa|down_5|CP020379.1_161826_162042_+	COG2221, DsrA, Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]	NA|360aa|down_6|CP020379.1_162070_163150_+	PRK07119, PRK07119, 2-ketoisovalerate ferredoxin reductase; Validated	NA|251aa|down_7|CP020379.1_163149_163902_+	cd03375, TPP_OGFOR, Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor	NA|186aa|down_8|CP020379.1_163902_164460_+	pfam01558, POR, Pyruvate ferredoxin/flavodoxin oxidoreductase	NA|449aa|down_9|CP020379.1_164629_165976_+	PRK14316, glmM, phosphoglucosamine mutase; Provisional
GCA_003457015.1_ASM345701v1	CP020379	Clostridioides difficile strain DSM 102860 chromosome, complete genome	5	151683-151772	5	CRISPRCasFinder	no		cas14j,csa3,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	TGTGCGTTAGCACTTTAAGCAACAGAAT	28	1	4	151711-151744|151711-151744|151711-151744|151711-151744	CP020379.1_146256-146289|CP020379.1_1229325-1229358|CP020379.1_3970036-3970003|CP020379.1_4105985-4105952	NA	1	1	Orphan	cas14j,csa3,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|226aa|down_4|CP020379.1_161106_161784_+	NA|278aa|up_9|CP020379.1_121359_122193_+	TIGR04520, ECF_ATPase_1, energy-coupling factor transporter ATPase	NA|289aa|up_8|CP020379.1_122180_123047_+	PRK13637, cbiO, energy-coupling factor transporter ATPase	NA|268aa|up_7|CP020379.1_123040_123844_+	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|244aa|up_6|CP020379.1_123875_124607_+	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|144aa|up_5|CP020379.1_124726_125158_+	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|131aa|up_4|CP020379.1_125186_125579_+	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|235aa|up_3|CP020379.1_126085_126790_+	TIGR02883, spore_cwlD, N-acetylmuramoyl-L-alanine amidase CwlD	NA|395aa|up_2|CP020379.1_139266_140451_-	PRK05764, PRK05764, aspartate aminotransferase; Provisional	NA|784aa|up_1|CP020379.1_140823_143175_+	PRK07111, PRK07111, anaerobic ribonucleoside triphosphate reductase; Provisional	NA|180aa|up_0|CP020379.1_143196_143736_+	TIGR02491, Anaerobic_ribonucleoside-triphosphate_reductase, anaerobic ribonucleoside-triphosphate reductase activating protein	NA|280aa|down_0|CP020379.1_156792_157632_+	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|394aa|down_1|CP020379.1_157628_158810_+	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|301aa|down_2|CP020379.1_159113_160016_+	PRK05805, PRK05805, phosphate butyryltransferase; Validated	NA|360aa|down_3|CP020379.1_160037_161117_+	PRK03011, PRK03011, butyrate kinase; Provisional	NA|226aa|down_4|CP020379.1_161106_161784_+	NA	NA|72aa|down_5|CP020379.1_161826_162042_+	COG2221, DsrA, Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]	NA|360aa|down_6|CP020379.1_162070_163150_+	PRK07119, PRK07119, 2-ketoisovalerate ferredoxin reductase; Validated	NA|251aa|down_7|CP020379.1_163149_163902_+	cd03375, TPP_OGFOR, Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor	NA|186aa|down_8|CP020379.1_163902_164460_+	pfam01558, POR, Pyruvate ferredoxin/flavodoxin oxidoreductase	NA|449aa|down_9|CP020379.1_164629_165976_+	PRK14316, glmM, phosphoglucosamine mutase; Provisional
GCA_003457015.1_ASM345701v1	CP020379	Clostridioides difficile strain DSM 102860 chromosome, complete genome	6	300411-300638	6,1	CRISPRCasFinder,CRT	no		cas14j,csa3,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	GTTTTAGATTAACTATATGGAATGTAAAT,GTTTTAGATTAACTATATGGAATGTAAATT	29,30	0	0	NA	NA	I-A:NA	3,3	3	Orphan	cas14j,csa3,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|116aa|up_9|CP020379.1_295018_295366_+,NA|146aa|up_7|CP020379.1_295783_296221_+,NA|62aa|up_6|CP020379.1_296204_296390_+,NA|53aa|up_2|CP020379.1_299042_299201_+,NA|36aa|up_1|CP020379.1_299577_299685_+,NA|70aa|up_0|CP020379.1_299909_300119_-,NA	NA|116aa|up_9|CP020379.1_295018_295366_+	NA	NA|142aa|up_8|CP020379.1_295365_295791_+	pfam04883, HK97-gp10_like, Bacteriophage HK97-gp10, putative tail-component	NA|146aa|up_7|CP020379.1_295783_296221_+	NA	NA|62aa|up_6|CP020379.1_296204_296390_+	NA	NA|437aa|up_5|CP020379.1_296390_297701_+	pfam04984, Phage_sheath_1, Phage tail sheath protein subtilisin-like domain	NA|157aa|up_4|CP020379.1_297717_298188_+	pfam09393, DUF2001, Phage tail tube protein	NA|147aa|up_3|CP020379.1_298259_298700_+	pfam08890, Phage_TAC_5, Phage XkdN-like tail assembly chaperone protein, TAC	NA|53aa|up_2|CP020379.1_299042_299201_+	NA	NA|36aa|up_1|CP020379.1_299577_299685_+	NA	NA|70aa|up_0|CP020379.1_299909_300119_-	NA	NA|187aa|down_0|CP020379.1_300765_301326_+	pfam00542, Ribosomal_L12, Ribosomal protein L7/L12 C-terminal domain	NA|789aa|down_1|CP020379.1_301401_303768_+	TIGR02675, Mu-like_prophage_FluMu_protein_gp42, tape measure domain	NA|232aa|down_2|CP020379.1_303783_304479_+	PRK11198, PRK11198, LysM domain/BON superfamily protein; Provisional	NA|653aa|down_3|CP020379.1_304471_306430_+	pfam00877, NLPC_P60, NlpC/P60 family	NA|88aa|down_4|CP020379.1_306443_306707_+	pfam10844, DUF2577, Protein of unknown function (DUF2577)	NA|140aa|down_5|CP020379.1_306708_307128_+	pfam10934, DUF2634, Protein of unknown function (DUF2634)	NA|350aa|down_6|CP020379.1_307127_308177_+	pfam04865, Baseplate_J, Baseplate J-like protein	NA|206aa|down_7|CP020379.1_308169_308787_+	pfam10076, DUF2313, Uncharacterized protein conserved in bacteria (DUF2313)	NA|268aa|down_8|CP020379.1_308802_309606_+	pfam12571, DUF3751, Phage tail-collar fibre protein	NA|576aa|down_9|CP020379.1_309622_311350_+	pfam12810, Gly_rich, Glycine rich protein
GCA_003457015.1_ASM345701v1	CP020379	Clostridioides difficile strain DSM 102860 chromosome, complete genome	7	922853-923031	7	CRISPRCasFinder	no	cas14j	cas14j,csa3,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Unclear	AAAAAATAATTAAATTAATTATATATT	27	0	0	NA	NA	NA	2	2	TypeV	cas14j,csa3,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|65aa|up_4|CP020379.1_916361_916556_+,NA	NA|649aa|up_9|CP020379.1_907529_909476_+	cd07410, MPP_CpdB_N, Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain	NA|635aa|up_8|CP020379.1_909878_911783_+	cd07410, MPP_CpdB_N, Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain	NA|274aa|up_7|CP020379.1_913110_913932_-	cd07736, PhnP-like_MBL-fold, phosphodiesterase Escherichia coli PhnP and related proteins; MBL-fold metallo hydrolase domain	NA|273aa|up_6|CP020379.1_914797_915616_-	cd01107, HTH_BmrR, Helix-Turn-Helix DNA binding domain of the BmrR transcription regulator	NA|194aa|up_5|CP020379.1_915783_916365_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|65aa|up_4|CP020379.1_916361_916556_+	NA	NA|581aa|up_3|CP020379.1_917282_919025_-	cd09606, M3B_PepF, Peptidase family M3B, oligopeptidase F (PepF)	NA|459aa|up_2|CP020379.1_919453_920830_+	TIGR00933, Trk_system_potassium_uptake_protein_trkH	NA|224aa|up_1|CP020379.1_921117_921789_+	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]	NA|266aa|up_0|CP020379.1_921977_922775_+	COG0566, SpoU, rRNA methylases [Translation, ribosomal structure and biogenesis]	NA|340aa|down_0|CP020379.1_923318_924338_+	PRK00488, pheS, phenylalanyl-tRNA synthetase subunit alpha; Validated	NA|798aa|down_1|CP020379.1_924354_926748_+	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed	NA|197aa|down_2|CP020379.1_926772_927363_+	pfam05164, ZapA, Cell division protein ZapA	cas14j|370aa|down_3|CP020379.1_928282_929392_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|228aa|down_4|CP020379.1_929544_930228_+	pfam06912, DUF1275, Protein of unknown function (DUF1275)	NA|861aa|down_5|CP020379.1_930523_933106_+	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|193aa|down_6|CP020379.1_933209_933788_+	COG2316, COG2316, Predicted hydrolase (HD superfamily) [General function prediction only]	NA|159aa|down_7|CP020379.1_933821_934298_+	cd03427, MTH1, MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily	NA|274aa|down_8|CP020379.1_934751_935573_+	cd02143, nitroreductase_FeS-like, nitroreductases with an N-terminal iron-sulfur cluster-binding domain	NA|645aa|down_9|CP020379.1_935810_937745_+	cd01007, PBP2_BvgS_HisK_like, The type 2 periplasmic ligand-binding protein domain of the sensor-kinase BvgS and histidine kinase receptors, and related proteins
GCA_003457015.1_ASM345701v1	CP020379	Clostridioides difficile strain DSM 102860 chromosome, complete genome	9	1661706-1661865	9	CRISPRCasFinder	no	DinG	cas14j,csa3,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Type IV-A	GTTTTATATTAACTATGTGGTATGTAAA	28	0	0	NA	NA	I-A	2	2	Orphan	cas14j,csa3,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|183aa|up_5|CP020379.1_1656368_1656917_-,NA|80aa|down_3|CP020379.1_1669000_1669240_+,NA|59aa|down_4|CP020379.1_1669426_1669603_-,NA|32aa|down_6|CP020379.1_1671284_1671380_-	NA|195aa|up_9|CP020379.1_1651555_1652140_-	pfam00882, Zn_dep_PLPC, Zinc dependent phospholipase C	NA|481aa|up_8|CP020379.1_1652339_1653782_-	COG3829, RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]	NA|315aa|up_7|CP020379.1_1654098_1655043_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|312aa|up_6|CP020379.1_1655313_1656249_-	COG1242, COG1242, Predicted Fe-S oxidoreductase [General function prediction only]	NA|183aa|up_5|CP020379.1_1656368_1656917_-	NA	NA|143aa|up_4|CP020379.1_1657068_1657497_+	pfam04657, DMT_YdcZ, Putative inner membrane exporter, YdcZ	NA|217aa|up_3|CP020379.1_1657581_1658232_+	cd01994, Alpha_ANH_like_IV, This is a subfamily of Adenine nucleotide alpha hydrolases superfamily	NA|452aa|up_2|CP020379.1_1658349_1659705_-	cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA	NA|182aa|up_1|CP020379.1_1660247_1660793_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|119aa|up_0|CP020379.1_1660822_1661179_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|578aa|down_0|CP020379.1_1662191_1663925_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|282aa|down_1|CP020379.1_1664164_1665010_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|270aa|down_2|CP020379.1_1668049_1668859_+	cd00592, HTH_MerR-like, Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators	NA|80aa|down_3|CP020379.1_1669000_1669240_+	NA	NA|59aa|down_4|CP020379.1_1669426_1669603_-	NA	NA|136aa|down_5|CP020379.1_1670822_1671230_-	cd01014, nicotinamidase_related, Nicotinamidase_ related amidohydrolases	NA|32aa|down_6|CP020379.1_1671284_1671380_-	NA	NA|45aa|down_7|CP020379.1_1671610_1671745_+	TIGR00232, Transketolase_2, transketolase, bacterial and yeast	NA|262aa|down_8|CP020379.1_1671844_1672630_+	COG3393, COG3393, Predicted acetyltransferase [General function prediction only]	NA|275aa|down_9|CP020379.1_1672726_1673551_-	cd10948, CE4_BsPdaA_like, Catalytic NodB homology domain of Bacillus subtilis polysaccharide deacetylase PdaA, and its bacterial homologs
GCA_003457015.1_ASM345701v1	CP020379	Clostridioides difficile strain DSM 102860 chromosome, complete genome	10	1769644-1770001	1,10,2	PILER-CR,CRISPRCasFinder,CRT	no		cas14j,csa3,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	GTTTTATATTAACTATATGGAATGTAAA,GTTTTATATTAACTATATGGAATGTAAAT,GTTTTATATTAACTATATGGAATGTAAA	28,29,28	0	0	NA	NA	I-A:I-A:I-A	4,5,5	5	Orphan	cas14j,csa3,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|184aa|up_7|CP020379.1_1759550_1760102_+,NA|61aa|up_4|CP020379.1_1763053_1763236_-,NA|54aa|down_0|CP020379.1_1770291_1770453_-,NA|323aa|down_5|CP020379.1_1774922_1775891_+	NA|195aa|up_9|CP020379.1_1757892_1758477_+	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|300aa|up_8|CP020379.1_1758629_1759529_+	TIGR02163, Ferredoxin-type_protein_NapH_homolog, ferredoxin-type protein, NapH/MauN family	NA|184aa|up_7|CP020379.1_1759550_1760102_+	NA	NA|216aa|up_6|CP020379.1_1760268_1760916_-	pfam02589, LUD_dom, LUD domain	NA|305aa|up_5|CP020379.1_1761306_1762221_-	pfam11155, DUF2935, Domain of unknown function (DUF2935)	NA|61aa|up_4|CP020379.1_1763053_1763236_-	NA	NA|283aa|up_3|CP020379.1_1763646_1764495_-	PRK00380, panC, pantoate--beta-alanine ligase; Reviewed	NA|276aa|up_2|CP020379.1_1764513_1765341_-	PRK00311, panB, 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed	NA|299aa|up_1|CP020379.1_1765315_1766212_-	pfam10728, DUF2520, Domain of unknown function (DUF2520)	NA|698aa|up_0|CP020379.1_1766889_1768983_+	cd01948, EAL, EAL domain	NA|54aa|down_0|CP020379.1_1770291_1770453_-	NA	NA|273aa|down_1|CP020379.1_1770659_1771478_+	cd04782, HTH_BltR, Helix-Turn-Helix DNA binding domain of the BltR transcription regulator	NA|707aa|down_2|CP020379.1_1771610_1773731_-	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]	NA|76aa|down_3|CP020379.1_1773756_1773984_-	pfam04023, FeoA, FeoA domain	NA|147aa|down_4|CP020379.1_1774309_1774750_-	COG2153, ElaA, Predicted acyltransferase [General function prediction only]	NA|323aa|down_5|CP020379.1_1774922_1775891_+	NA	NA|403aa|down_6|CP020379.1_1776376_1777585_+	PRK13354, PRK13354, tyrosyl-tRNA synthetase; Provisional	NA|294aa|down_7|CP020379.1_1777645_1778527_-	cd10944, CE4_SmPgdA_like, Catalytic NodB homology domain of Streptococcus mutans polysaccharide deacetylase PgdA, Bacillus subtilis YheN, and similar proteins	NA|305aa|down_8|CP020379.1_1778942_1779857_+	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|182aa|down_9|CP020379.1_1780079_1780625_+	cd01046, Rubrerythrin_like, rubrerythrin-like, diiron-binding domain
GCA_003457015.1_ASM345701v1	CP020379	Clostridioides difficile strain DSM 102860 chromosome, complete genome	11	1945618-1946829	2,11,3	PILER-CR,CRISPRCasFinder,CRT	no		cas14j,csa3,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	GTTTTATATTAACTATGTGGTATGTAAAT,GTTTTATATTAACTATGTGGTATGTAAAT,GTTTTATATTAACTATGTGGTATGTAAAT	29,29,29	2	3	1945978-1946014|1946633-1946669|1946633-1946669	CP020379.1_1312997-1313033|CP020379.1_277982-277946|CP020379.1_1294735-1294699	I-A:I-A:I-A	18,18,18	18	Orphan	cas14j,csa3,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|63aa|down_0|CP020379.1_1947400_1947589_+,NA|59aa|down_4|CP020379.1_1954088_1954265_-,NA|338aa|down_5|CP020379.1_1954839_1955853_+,NA|258aa|down_7|CP020379.1_1956759_1957533_+	NA|266aa|up_9|CP020379.1_1928752_1929550_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|329aa|up_8|CP020379.1_1929859_1930846_-	TIGR00545, Probable_lipoate-protein_ligase_A, lipoyltransferase and lipoate-protein ligase	NA|577aa|up_7|CP020379.1_1931329_1933060_+	COG1757, NhaC, Na+/H+ antiporter [Energy production and conversion]	NA|172aa|up_6|CP020379.1_1933596_1934112_+	pfam13787, HXXEE, Protein of unknown function with HXXEE motif	NA|825aa|up_5|CP020379.1_1934900_1937375_+	PRK00451, PRK00451, aminomethyl-transferring glycine dehydrogenase subunit GcvPA	NA|486aa|up_4|CP020379.1_1937374_1938832_+	PRK04366, PRK04366, aminomethyl-transferring glycine dehydrogenase subunit GcvPB	NA|786aa|up_3|CP020379.1_1939254_1941612_+	cd02609, P-type_ATPase, uncharacterized subfamily of P-type ATPase transporter, similar to uncharacterized Streptococcus pneumoniae exported protein 7, Exp7	NA|106aa|up_2|CP020379.1_1941697_1942015_-	pfam06865, DUF1255, Protein of unknown function (DUF1255)	NA|239aa|up_1|CP020379.1_1942344_1943061_+	pfam08874, DUF1835, Domain of unknown function (DUF1835)	NA|424aa|up_0|CP020379.1_1943742_1945014_-	cd01303, GDEase, Guanine deaminase (GDEase)	NA|63aa|down_0|CP020379.1_1947400_1947589_+	NA	NA|184aa|down_1|CP020379.1_1948225_1948777_-	cd02209, cupin_XRE_C, XRE (Xenobiotic Response Element) family transcriptional regulators, C-terminal cupin domain	NA|615aa|down_2|CP020379.1_1950226_1952071_+	cd08579, GDPD_memb_like, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases	NA|198aa|down_3|CP020379.1_1952391_1952985_+	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates	NA|59aa|down_4|CP020379.1_1954088_1954265_-	NA	NA|338aa|down_5|CP020379.1_1954839_1955853_+	NA	NA|296aa|down_6|CP020379.1_1955866_1956754_+	cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component	NA|258aa|down_7|CP020379.1_1956759_1957533_+	NA	NA|242aa|down_8|CP020379.1_1957644_1958370_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|207aa|down_9|CP020379.1_1959226_1959847_-	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]
GCA_003457015.1_ASM345701v1	CP020379	Clostridioides difficile strain DSM 102860 chromosome, complete genome	12	2814279-2814436	12	CRISPRCasFinder	no	cas14j,cas3,cas5,cas7,cas6	cas14j,csa3,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Unclear	TGAAATCCACTTAGTTAATCTTAAAC	26	0	0	NA	NA	NA	2	2	TypeV	cas14j,csa3,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|492aa|down_3|CP020379.1_2818862_2820338_-	NA|188aa|up_9|CP020379.1_2806664_2807228_-	cd00552, RaiA, RaiA ("ribosome-associated inhibitor A", also known as Protein Y (PY), YfiA, and SpotY,  is a stress-response protein that binds the ribosomal subunit interface and arrests translation by interfering with aminoacyl-tRNA binding to the ribosomal A site	NA|166aa|up_8|CP020379.1_2807420_2807918_-	cd15904, TSPO_MBR, Translocator protein (TSPO)/peripheral-type benzodiazepine receptor (MBR) family	NA|148aa|up_7|CP020379.1_2808028_2808472_-	pfam09424, YqeY, Yqey-like protein	NA|60aa|up_6|CP020379.1_2808501_2808681_-	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|117aa|up_5|CP020379.1_2808843_2809194_-	cd01276, PKCI_related, Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides	NA|433aa|up_4|CP020379.1_2809236_2810535_-	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|91aa|up_3|CP020379.1_2810536_2810809_-	PRK11713, PRK11713, 16S ribosomal RNA methyltransferase RsmE; Provisional	cas14j|370aa|up_2|CP020379.1_2811051_2812161_-	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|121aa|up_1|CP020379.1_2812810_2813173_-	PRK11713, PRK11713, 16S ribosomal RNA methyltransferase RsmE; Provisional	NA|316aa|up_0|CP020379.1_2813191_2814139_-	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	cas3|803aa|down_0|CP020379.1_2814579_2816988_-	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	cas5|266aa|down_1|CP020379.1_2817014_2817812_-	cd09658, Cas5_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|339aa|down_2|CP020379.1_2817827_2818844_-	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	NA|492aa|down_3|CP020379.1_2818862_2820338_-	NA	cas6|246aa|down_4|CP020379.1_2820342_2821080_-	cd09652, Cas6-I-III, CRISPR/Cas system-associated RAMP superfamily protein Cas6	NA|370aa|down_5|CP020379.1_2821337_2822447_+	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA|256aa|down_6|CP020379.1_2822476_2823244_+	pfam13556, HTH_30, PucR C-terminal helix-turn-helix domain	NA|458aa|down_7|CP020379.1_2823431_2824805_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|312aa|down_8|CP020379.1_2824840_2825776_-	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|385aa|down_9|CP020379.1_2826738_2827893_-	PRK10767, PRK10767, chaperone protein DnaJ; Provisional
GCA_003457015.1_ASM345701v1	CP020379	Clostridioides difficile strain DSM 102860 chromosome, complete genome	13	2895010-2895237	3,13,4	PILER-CR,CRISPRCasFinder,CRT	no		cas14j,csa3,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	GTTTTATATTAACTAAGTGGTATGTAAAT,ATTTACATACCACTTAGTTAATATAAAACA,ATTTACATACCACTTAGTTAATATAAAAC	29,30,29	0	0	NA	NA	I-A:I-A:I-A	3,3,3	3	Orphan	cas14j,csa3,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|53aa|down_0|CP020379.1_2895529_2895688_-	NA|240aa|up_9|CP020379.1_2883297_2884017_-	pfam01841, Transglut_core, Transglutaminase-like superfamily	NA|238aa|up_8|CP020379.1_2884063_2884777_-	COG2169, Ada, Adenosine deaminase [Nucleotide transport and metabolism]	NA|451aa|up_7|CP020379.1_2884952_2886305_-	cd05298, GH4_GlvA_pagL_like, Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases	NA|517aa|up_6|CP020379.1_2886351_2887902_-	TIGR02005, PTS-IIBC-alpha, PTS system, alpha-glucoside-specific IIBC component	NA|272aa|up_5|CP020379.1_2887954_2888770_-	PRK09772, PRK09772, transcriptional antiterminator BglG; Provisional	NA|161aa|up_4|CP020379.1_2888790_2889273_-	pfam00358, PTS_EIIA_1, phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1	NA|127aa|up_3|CP020379.1_2889556_2889937_-	TIGR00004, RutC_family_protein, reactive intermediate/imine deaminase	NA|406aa|up_2|CP020379.1_2890031_2891249_-	PRK08198, PRK08198, threonine dehydratase; Provisional	NA|543aa|up_1|CP020379.1_2891907_2893536_+	TIGR03801, For_A_Pyridoxal-5-_Phosphate, aspartate 4-decarboxylase	NA|332aa|up_0|CP020379.1_2893656_2894652_+	cd08964, L-asparaginase_II, Type II (periplasmic) bacterial L-asparaginase	NA|53aa|down_0|CP020379.1_2895529_2895688_-	NA	NA|807aa|down_1|CP020379.1_2896109_2898530_-	PRK00390, leuS, leucyl-tRNA synthetase; Validated	NA|117aa|down_2|CP020379.1_2898883_2899234_-	pfam02410, RsfS, Ribosomal silencing factor during starvation	NA|191aa|down_3|CP020379.1_2899350_2899923_-	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]	NA|230aa|down_4|CP020379.1_2899923_2900613_-	PRK00071, nadD, nicotinate-nucleotide adenylyltransferase	NA|213aa|down_5|CP020379.1_2900888_2901527_+	PRK00117, recX, recombination regulator RecX; Reviewed	NA|668aa|down_6|CP020379.1_2901679_2903683_+	PLN02447, PLN02447, 1,4-alpha-glucan-branching enzyme	NA|104aa|down_7|CP020379.1_2903809_2904121_-	pfam03992, ABM, Antibiotic biosynthesis monooxygenase	NA|273aa|down_8|CP020379.1_2904198_2905017_-	pfam12833, HTH_18, Helix-turn-helix domain	NA|175aa|down_9|CP020379.1_2905116_2905641_-	pfam07155, ECF-ribofla_trS, ECF-type riboflavin transporter, S component
GCA_003457015.1_ASM345701v1	CP020379	Clostridioides difficile strain DSM 102860 chromosome, complete genome	14	3108074-3108564	14,5,4	CRISPRCasFinder,CRT,PILER-CR	no		cas14j,csa3,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	ATTTACATTCCATATAGTTAATCTAAAAC,ATTTACATTCCATATAGTTAATCTAAAAC,GTTTTAGATTAACTATATGGAATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	7,7,5	7	Orphan	cas14j,csa3,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|98aa|up_9|CP020379.1_3100074_3100368_-,NA|206aa|up_7|CP020379.1_3102081_3102699_-,NA|122aa|up_2|CP020379.1_3105435_3105801_-,NA|321aa|up_1|CP020379.1_3105793_3106756_-,NA|59aa|down_0|CP020379.1_3108805_3108982_-,NA|68aa|down_8|CP020379.1_3118799_3119003_-,NA|275aa|down_9|CP020379.1_3119015_3119840_-	NA|98aa|up_9|CP020379.1_3100074_3100368_-	NA	NA|561aa|up_8|CP020379.1_3100384_3102067_-	pfam12810, Gly_rich, Glycine rich protein	NA|206aa|up_7|CP020379.1_3102081_3102699_-	NA	NA|127aa|up_6|CP020379.1_3102710_3103091_-	pfam12571, DUF3751, Phage tail-collar fibre protein	NA|257aa|up_5|CP020379.1_3103091_3103862_-	pfam10076, DUF2313, Uncharacterized protein conserved in bacteria (DUF2313)	NA|379aa|up_4|CP020379.1_3103858_3104995_-	pfam04865, Baseplate_J, Baseplate J-like protein	NA|154aa|up_3|CP020379.1_3104999_3105461_-	pfam10934, DUF2634, Protein of unknown function (DUF2634)	NA|122aa|up_2|CP020379.1_3105435_3105801_-	NA	NA|321aa|up_1|CP020379.1_3105793_3106756_-	NA	NA|224aa|up_0|CP020379.1_3106752_3107424_-	PRK11198, PRK11198, LysM domain/BON superfamily protein; Provisional	NA|59aa|down_0|CP020379.1_3108805_3108982_-	NA	NA|289aa|down_1|CP020379.1_3109041_3109908_-	smart01040, Bro-N, BRO family, N-terminal domain	NA|265aa|down_2|CP020379.1_3110684_3111479_-	PRK12704, PRK12704, phosphodiesterase; Provisional	NA|1087aa|down_3|CP020379.1_3111558_3114819_-	TIGR01760, COG5283:_Phage-related_tail_protein, phage tail tape measure protein, TP901 family, core region	NA|366aa|down_4|CP020379.1_3115111_3116209_-	TIGR01760, COG5283:_Phage-related_tail_protein, phage tail tape measure protein, TP901 family, core region	NA|158aa|down_5|CP020379.1_3116389_3116863_-	pfam08890, Phage_TAC_5, Phage XkdN-like tail assembly chaperone protein, TAC	NA|141aa|down_6|CP020379.1_3116939_3117362_-	pfam09393, DUF2001, Phage tail tube protein	NA|474aa|down_7|CP020379.1_3117376_3118798_-	pfam04984, Phage_sheath_1, Phage tail sheath protein subtilisin-like domain	NA|68aa|down_8|CP020379.1_3118799_3119003_-	NA	NA|275aa|down_9|CP020379.1_3119015_3119840_-	NA
GCA_003457015.1_ASM345701v1	CP020379	Clostridioides difficile strain DSM 102860 chromosome, complete genome	15	3110367-3110590	15,6	CRISPRCasFinder,CRT	no		cas14j,csa3,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	TTTTAAATACCACTTAGTTAATATAAA,ATACCACTTAGTTAATATAAAA	27,22	0	0	NA	NA	NA:NA	3,3	3	Orphan	cas14j,csa3,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|206aa|up_9|CP020379.1_3102081_3102699_-,NA|122aa|up_4|CP020379.1_3105435_3105801_-,NA|321aa|up_3|CP020379.1_3105793_3106756_-,NA|59aa|up_1|CP020379.1_3108805_3108982_-,NA|68aa|down_6|CP020379.1_3118799_3119003_-,NA|275aa|down_7|CP020379.1_3119015_3119840_-,NA|137aa|down_8|CP020379.1_3119841_3120252_-,NA|128aa|down_9|CP020379.1_3120262_3120646_-	NA|206aa|up_9|CP020379.1_3102081_3102699_-	NA	NA|127aa|up_8|CP020379.1_3102710_3103091_-	pfam12571, DUF3751, Phage tail-collar fibre protein	NA|257aa|up_7|CP020379.1_3103091_3103862_-	pfam10076, DUF2313, Uncharacterized protein conserved in bacteria (DUF2313)	NA|379aa|up_6|CP020379.1_3103858_3104995_-	pfam04865, Baseplate_J, Baseplate J-like protein	NA|154aa|up_5|CP020379.1_3104999_3105461_-	pfam10934, DUF2634, Protein of unknown function (DUF2634)	NA|122aa|up_4|CP020379.1_3105435_3105801_-	NA	NA|321aa|up_3|CP020379.1_3105793_3106756_-	NA	NA|224aa|up_2|CP020379.1_3106752_3107424_-	PRK11198, PRK11198, LysM domain/BON superfamily protein; Provisional	NA|59aa|up_1|CP020379.1_3108805_3108982_-	NA	NA|289aa|up_0|CP020379.1_3109041_3109908_-	smart01040, Bro-N, BRO family, N-terminal domain	NA|265aa|down_0|CP020379.1_3110684_3111479_-	PRK12704, PRK12704, phosphodiesterase; Provisional	NA|1087aa|down_1|CP020379.1_3111558_3114819_-	TIGR01760, COG5283:_Phage-related_tail_protein, phage tail tape measure protein, TP901 family, core region	NA|366aa|down_2|CP020379.1_3115111_3116209_-	TIGR01760, COG5283:_Phage-related_tail_protein, phage tail tape measure protein, TP901 family, core region	NA|158aa|down_3|CP020379.1_3116389_3116863_-	pfam08890, Phage_TAC_5, Phage XkdN-like tail assembly chaperone protein, TAC	NA|141aa|down_4|CP020379.1_3116939_3117362_-	pfam09393, DUF2001, Phage tail tube protein	NA|474aa|down_5|CP020379.1_3117376_3118798_-	pfam04984, Phage_sheath_1, Phage tail sheath protein subtilisin-like domain	NA|68aa|down_6|CP020379.1_3118799_3119003_-	NA	NA|275aa|down_7|CP020379.1_3119015_3119840_-	NA	NA|137aa|down_8|CP020379.1_3119841_3120252_-	NA	NA|128aa|down_9|CP020379.1_3120262_3120646_-	NA
GCA_003457015.1_ASM345701v1	CP020379	Clostridioides difficile strain DSM 102860 chromosome, complete genome	20	3460711-3463698	20,7,5,6	CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no	cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6,WYL	cas14j,csa3,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Unclear	ATTTACATACCACTTAGTTAATATAAAAC,ATTTACATACCACTTAGTTAATATAAAAC,GTTTTATATTAACTAAGTGGTATGTAAA,GTTTTATATTAACTAAGTGGTATGTAAAT	29,29,28,29	3	4	3462977-3463013|3462977-3463013|3463043-3463079|3463241-3463276	CP020379.1_315963-315999|CP020379.1_1332251-1332287|CP020379.1_272933-272969|CP020379.1_287197-287162	I-A:I-A:I-A:I-A	45,45,40,40	45	Unclear	cas14j,csa3,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|67aa|up_7|CP020379.1_3453591_3453792_+,NA|260aa|up_1|CP020379.1_3458977_3459757_+,NA	NA|221aa|up_9|CP020379.1_3447026_3447689_-	COG3382, COG3382, Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta [General function prediction only]	NA|885aa|up_8|CP020379.1_3450434_3453089_-	PRK13805, PRK13805, bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional	NA|67aa|up_7|CP020379.1_3453591_3453792_+	NA	NA|197aa|up_6|CP020379.1_3453998_3454589_-	PRK08305, spoVFB, dipicolinate synthase subunit B; Reviewed	NA|293aa|up_5|CP020379.1_3454591_3455470_-	PRK08306, PRK08306, dipicolinate synthase subunit DpsA	NA|464aa|up_4|CP020379.1_3455545_3456937_-	cd17633, AFD_YhfT-like, fatty acid-CoA ligase VraA	NA|379aa|up_3|CP020379.1_3456940_3458077_-	cd00751, thiolase, Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine	NA|182aa|up_2|CP020379.1_3458108_3458654_-	pfam02632, BioY, BioY family	NA|260aa|up_1|CP020379.1_3458977_3459757_+	NA	NA|143aa|up_0|CP020379.1_3460221_3460650_-	PRK10562, PRK10562, putative acetyltransferase; Provisional	cas2|89aa|down_0|CP020379.1_3463881_3464148_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|327aa|down_1|CP020379.1_3464150_3465131_-	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP	cas4|190aa|down_2|CP020379.1_3465133_3465703_-	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas3|774aa|down_3|CP020379.1_3465699_3468021_-	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	cas5|234aa|down_4|CP020379.1_3468031_3468733_-	cd09658, Cas5_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|305aa|down_5|CP020379.1_3468734_3469649_-	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas8b2|617aa|down_6|CP020379.1_3469650_3471501_-	pfam09706, Cas_CXXC_CXXC, CRISPR-associated protein (Cas_CXXC_CXXC)	cas6|246aa|down_7|CP020379.1_3471506_3472244_-	cd09652, Cas6-I-III, CRISPR/Cas system-associated RAMP superfamily protein Cas6	WYL|318aa|down_8|CP020379.1_3472321_3473275_-	pfam13280, WYL, WYL domain	NA|639aa|down_9|CP020379.1_3473517_3475434_-	pfam02687, FtsX, FtsX-like permease family
GCA_003457015.1_ASM345701v1	CP020379	Clostridioides difficile strain DSM 102860 chromosome, complete genome	21	3744202-3744297	21	CRISPRCasFinder	no		cas14j,csa3,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	TAAATTAATTTTCTATACTTCCTAAATTA	29	0	0	NA	NA	NA	1	1	Orphan	cas14j,csa3,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|41aa|up_6|CP020379.1_3739153_3739276_-,NA|77aa|up_2|CP020379.1_3742284_3742515_-,NA|83aa|up_0|CP020379.1_3743782_3744031_+,NA	NA|338aa|up_9|CP020379.1_3736267_3737281_-	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein	NA|343aa|up_8|CP020379.1_3737283_3738312_-	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein	NA|282aa|up_7|CP020379.1_3738311_3739157_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|41aa|up_6|CP020379.1_3739153_3739276_-	NA	NA|377aa|up_5|CP020379.1_3739588_3740719_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|224aa|up_4|CP020379.1_3740715_3741387_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|217aa|up_3|CP020379.1_3741577_3742228_-	TIGR03592, yidC_oxa1_cterm, membrane protein insertase, YidC/Oxa1 family, C-terminal domain	NA|77aa|up_2|CP020379.1_3742284_3742515_-	NA	NA|198aa|up_1|CP020379.1_3743071_3743665_+	cd02136, PnbA_NfnB-like, nitroreductase similar to Mycobacterium smegmatis NfnB	NA|83aa|up_0|CP020379.1_3743782_3744031_+	NA	NA|468aa|down_0|CP020379.1_3744345_3745749_-	cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA	NA|154aa|down_1|CP020379.1_3745732_3746194_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|172aa|down_2|CP020379.1_3746540_3747056_+	COG1695, COG1695, Predicted transcriptional regulators [Transcription]	NA|168aa|down_3|CP020379.1_3747104_3747608_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|217aa|down_4|CP020379.1_3747604_3748255_+	pfam02525, Flavodoxin_2, Flavodoxin-like fold	NA|260aa|down_5|CP020379.1_3748389_3749169_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|84aa|down_6|CP020379.1_3749285_3749537_-	pfam12636, DUF3781, Protein of unknown function (DUF3781)	NA|290aa|down_7|CP020379.1_3749730_3750600_-	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|254aa|down_8|CP020379.1_3750937_3751699_-	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|512aa|down_9|CP020379.1_3751714_3753250_-	cd13612, PBP2_ProWX, Substrate-binding protein ProWX of ABC-type osmoregulated transporter and its related proteins; the type 2 periplasmic-binding protein fold
GCA_003457015.1_ASM345701v1	CP020379	Clostridioides difficile strain DSM 102860 chromosome, complete genome	22	3771112-3771345	8	CRT	no		cas14j,csa3,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	CCTGTTGGNCCTGTTANTCCATTTGCT	27	2	2	3771139-3771156|3771184-3771210	CP020379.1_3771085-3771102|CP020379.1_3909105-3909131	NA	4	4	Orphan	cas14j,csa3,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|46aa|down_2|CP020379.1_3774130_3774268_+	NA|82aa|up_9|CP020379.1_3759513_3759759_-	pfam00269, SASP, Small, acid-soluble spore proteins, alpha/beta type	NA|373aa|up_8|CP020379.1_3759889_3761008_-	cd05670, M20_Acy1_YkuR-like, M20 Peptidase aminoacyclase-1 YkuR-like proteins, including YkuR and Ama/HipO/HyuC proteins	NA|398aa|up_7|CP020379.1_3761213_3762407_-	TIGR00720, hypothetical_protein_NEICINOT_00681, L-serine dehydratase, iron-sulfur-dependent, single chain form	NA|294aa|up_6|CP020379.1_3762729_3763611_+	PRK03170, PRK03170, dihydrodipicolinate synthase; Provisional	NA|334aa|up_5|CP020379.1_3764040_3765042_+	PRK14874, PRK14874, aspartate-semialdehyde dehydrogenase; Provisional	NA|296aa|up_4|CP020379.1_3765158_3766046_+	PRK03170, PRK03170, dihydrodipicolinate synthase; Provisional	NA|250aa|up_3|CP020379.1_3766112_3766862_+	PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional	NA|239aa|up_2|CP020379.1_3767085_3767802_+	TIGR03532, DapD_Ac, 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase	NA|330aa|up_1|CP020379.1_3768219_3769209_-	cd03402, SPFH_like_u2, Uncharacterized family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily	NA|252aa|up_0|CP020379.1_3769648_3770404_+	PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional	NA|180aa|down_0|CP020379.1_3771743_3772283_-	COG0634, Hpt, Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]	NA|436aa|down_1|CP020379.1_3772610_3773918_-	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism]	NA|46aa|down_2|CP020379.1_3774130_3774268_+	NA	NA|589aa|down_3|CP020379.1_3774341_3776108_-	COG3829, RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]	NA|190aa|down_4|CP020379.1_3776328_3776898_-	COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]	NA|212aa|down_5|CP020379.1_3777081_3777717_-	PRK05813, PRK05813, single-stranded DNA-binding protein; Provisional	NA|294aa|down_6|CP020379.1_3778383_3779265_-	pfam01925, TauE, Sulfite exporter TauE/SafE	NA|336aa|down_7|CP020379.1_3779384_3780392_-	PRK13969, PRK13969, proline racemase; Provisional	NA|156aa|down_8|CP020379.1_3780911_3781379_-	TIGR04480, D-proline_reductase_PrdA_proprotein, D-proline reductase (dithiol), PrdA proprotein	NA|253aa|down_9|CP020379.1_3781393_3782152_-	TIGR04482, D_pro_red_PrdD, proline reductase cluster protein PrdD
GCA_003457015.1_ASM345701v1	CP020379	Clostridioides difficile strain DSM 102860 chromosome, complete genome	23	3830956-3831601	22,9,7	CRISPRCasFinder,CRT,PILER-CR	no		cas14j,csa3,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	AATTTACATTCCATATAGTTAATATAAAAC,TTTACATTCCANATAGTTAATATAAAA,ATTTTATATTAACTAAGTGGTATGTAAA	30,27,28	1	1	3831051-3831085	CP020379.1_3112906-3112872	I-A:I-A:I-A	9,9,2	9	Orphan	cas14j,csa3,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|122aa|up_6|CP020379.1_3826752_3827118_-,NA|321aa|up_5|CP020379.1_3827110_3828073_-,NA|53aa|up_3|CP020379.1_3829080_3829239_-,NA|68aa|up_2|CP020379.1_3829413_3829617_-,NA|59aa|up_0|CP020379.1_3830620_3830797_-,NA|53aa|down_0|CP020379.1_3831886_3832045_-	NA|257aa|up_9|CP020379.1_3824411_3825182_-	pfam10076, DUF2313, Uncharacterized protein conserved in bacteria (DUF2313)	NA|378aa|up_8|CP020379.1_3825178_3826312_-	pfam04865, Baseplate_J, Baseplate J-like protein	NA|154aa|up_7|CP020379.1_3826316_3826778_-	pfam10934, DUF2634, Protein of unknown function (DUF2634)	NA|122aa|up_6|CP020379.1_3826752_3827118_-	NA	NA|321aa|up_5|CP020379.1_3827110_3828073_-	NA	NA|224aa|up_4|CP020379.1_3828069_3828741_-	PRK11198, PRK11198, LysM domain/BON superfamily protein; Provisional	NA|53aa|up_3|CP020379.1_3829080_3829239_-	NA	NA|68aa|up_2|CP020379.1_3829413_3829617_-	NA	NA|273aa|up_1|CP020379.1_3829676_3830495_-	COG3617, COG3617, Prophage antirepressor [Transcription]	NA|59aa|up_0|CP020379.1_3830620_3830797_-	NA	NA|53aa|down_0|CP020379.1_3831886_3832045_-	NA	NA|134aa|down_1|CP020379.1_3832263_3832665_+	pfam15919, HicB_lk_antitox, HicB_like antitoxin of bacterial toxin-antitoxin system	NA|364aa|down_2|CP020379.1_3832733_3833825_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|227aa|down_3|CP020379.1_3834003_3834684_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|659aa|down_4|CP020379.1_3834733_3836710_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|226aa|down_5|CP020379.1_3836820_3837498_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|281aa|down_6|CP020379.1_3838392_3839235_-	cd13653, PBP2_phosphate_like_1, Substrate binding domain of putative ABC-type phosphate transporter, a member of the type 2 periplasmic binding fold superfamily	NA|595aa|down_7|CP020379.1_3839486_3841271_-	cd09608, M3B_PepF, Peptidase family M3B, oligopeptidase F (PepF)	NA|222aa|down_8|CP020379.1_3841336_3842002_-	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|68aa|down_9|CP020379.1_3842152_3842356_-	pfam09388, SpoOE-like, Spo0E like sporulation regulatory protein
