assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003454775.1_ASM345477v1	CP031971	Parvimonas micra strain KCOM 1037 chromosome, complete genome	1	47696-47797	1	CRISPRCasFinder	no	WYL	WYL,RT,PD-DExK,DEDDh,cas3,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas6	Unclear	ACAATGACTCTGGAAATCTCCTAA	24	0	0	NA	NA	NA	1	1	Orphan	WYL,RT,PD-DExK,DEDDh,cas3,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas6	NA|195aa|up_6|CP031971.1_42109_42694_+,NA|155aa|up_5|CP031971.1_42723_43188_+,NA|262aa|down_1|CP031971.1_48740_49526_+,NA|74aa|down_4|CP031971.1_52966_53188_-,NA|237aa|down_5|CP031971.1_53188_53899_-	NA|231aa|up_9|CP031971.1_36960_37653_+	pfam02683, DsbD, Cytochrome C biogenesis protein transmembrane region	NA|1030aa|up_8|CP031971.1_37907_40997_+	pfam05738, Cna_B, Cna protein B-type domain	NA|269aa|up_7|CP031971.1_41253_42060_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|195aa|up_6|CP031971.1_42109_42694_+	NA	NA|155aa|up_5|CP031971.1_42723_43188_+	NA	NA|233aa|up_4|CP031971.1_43323_44022_+	pfam01841, Transglut_core, Transglutaminase-like superfamily	WYL|304aa|up_3|CP031971.1_44166_45078_+	COG2378, COG2378, Predicted transcriptional regulator [Transcription]	NA|203aa|up_2|CP031971.1_45120_45729_+	COG4832, COG4832, Uncharacterized conserved protein [Function unknown]	NA|180aa|up_1|CP031971.1_45740_46280_+	pfam08020, DUF1706, Protein of unknown function (DUF1706)	NA|292aa|up_0|CP031971.1_46303_47179_+	TIGR04470, hypothetical_protein_ALIPUT_00462, radical SAM mobile pair protein B	NA|266aa|down_0|CP031971.1_47906_48704_+	PRK04143, PRK04143, protein-ADP-ribose hydrolase	NA|262aa|down_1|CP031971.1_48740_49526_+	NA	NA|330aa|down_2|CP031971.1_49533_50523_+	COG0846, SIR2, NAD-dependent protein deacetylases, SIR2 family [Transcription]	NA|70aa|down_3|CP031971.1_51790_52000_-	pfam12645, HTH_16, Helix-turn-helix domain	NA|74aa|down_4|CP031971.1_52966_53188_-	NA	NA|237aa|down_5|CP031971.1_53188_53899_-	NA	NA|244aa|down_6|CP031971.1_53895_54627_-	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter	NA|218aa|down_7|CP031971.1_54632_55286_-	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|429aa|down_8|CP031971.1_57373_58660_+	COG0577, SalY, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]	NA|215aa|down_9|CP031971.1_58670_59315_+	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein
GCA_003454775.1_ASM345477v1	CP031971	Parvimonas micra strain KCOM 1037 chromosome, complete genome	2	138006-138122	2	CRISPRCasFinder	no		WYL,RT,PD-DExK,DEDDh,cas3,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas6	Orphan	TGATAAAGCTGTAATTATTTCATCATAAT	29	0	0	NA	NA	NA	1	1	Orphan	WYL,RT,PD-DExK,DEDDh,cas3,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas6	NA,NA	NA|434aa|up_9|CP031971.1_122915_124217_+	TIGR00442, hisS, histidyl-tRNA synthetase	NA|649aa|up_8|CP031971.1_124410_126357_+	PRK00413, thrS, threonyl-tRNA synthetase; Reviewed	NA|268aa|up_7|CP031971.1_126406_127210_-	pfam02517, Abi, CAAX protease self-immunity	NA|232aa|up_6|CP031971.1_127222_127918_-	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|425aa|up_5|CP031971.1_128236_129511_+	pfam00375, SDF, Sodium:dicarboxylate symporter family	NA|218aa|up_4|CP031971.1_130147_130801_+	cd02230, cupin_HP0902-like, Helicobacter pylori HP0902 and related proteins, cupin domain	NA|123aa|up_3|CP031971.1_131605_131974_+	TIGR02328, TIGR02328, conserved hypothetical protein	NA|512aa|up_2|CP031971.1_132157_133693_+	pfam11230, DUF3029, Protein of unknown function (DUF3029)	NA|282aa|up_1|CP031971.1_133682_134528_+	TIGR04041, glycine_radical_enzyme_activase_YjjW_family, glycine radical enzyme activase, YjjW family	NA|1074aa|up_0|CP031971.1_134688_137910_+	NF033189, internalin_A, class 1 internalin InlA	NA|151aa|down_0|CP031971.1_138198_138651_+	COG0802, COG0802, Predicted ATPase or kinase [General function prediction only]	NA|228aa|down_1|CP031971.1_138647_139331_+	TIGR03725, T6A_YeaZ, tRNA threonylcarbamoyl adenosine modification protein YeaZ	NA|145aa|down_2|CP031971.1_139331_139766_+	TIGR01575, rimI, ribosomal-protein-alanine acetyltransferase	NA|339aa|down_3|CP031971.1_139765_140782_+	PRK09604, PRK09604, tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	NA|59aa|down_4|CP031971.1_143624_143801_+	COG1241, MCM2, Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]	NA|419aa|down_5|CP031971.1_143900_145157_-	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|331aa|down_6|CP031971.1_145723_146716_+	PRK02102, PRK02102, ornithine carbamoyltransferase; Validated	NA|312aa|down_7|CP031971.1_146725_147661_+	PRK12353, PRK12353, putative amino acid kinase; Reviewed	NA|312aa|down_8|CP031971.1_147670_148606_+	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|400aa|down_9|CP031971.1_148713_149913_+	pfam11187, DUF2974, Protein of unknown function (DUF2974)
GCA_003454775.1_ASM345477v1	CP031971	Parvimonas micra strain KCOM 1037 chromosome, complete genome	4	181089-181193	4	CRISPRCasFinder	no		WYL,RT,PD-DExK,DEDDh,cas3,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas6	Orphan	CCCGATGCAAAGCATCGAGGAAGGGTGAGGTTTTTATTA	39	1	1	181128-181154	CP031971.1_1288427-1288453	NA	1	1	Orphan	WYL,RT,PD-DExK,DEDDh,cas3,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas6	NA|67aa|up_9|CP031971.1_173581_173782_-,NA|120aa|down_5|CP031971.1_187731_188091_+	NA|67aa|up_9|CP031971.1_173581_173782_-	NA	NA|82aa|up_8|CP031971.1_173747_173993_-	PRK01678, rpmE2, type B 50S ribosomal protein L31	NA|277aa|up_7|CP031971.1_174204_175035_+	pfam00303, Thymidylat_synt, Thymidylate synthase	NA|179aa|up_6|CP031971.1_175044_175581_+	COG1853, COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family [General function prediction only]	NA|148aa|up_5|CP031971.1_175709_176153_+	COG2153, ElaA, Predicted acyltransferase [General function prediction only]	NA|698aa|up_4|CP031971.1_176163_178257_+	PRK05582, PRK05582, type I DNA topoisomerase	NA|444aa|up_3|CP031971.1_178246_179578_+	cd13135, MATE_like_9, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins	NA|171aa|up_2|CP031971.1_179645_180158_+	cd00431, cysteine_hydrolases, Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle	NA|114aa|up_1|CP031971.1_180331_180673_+	cd01276, PKCI_related, Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides	NA|60aa|up_0|CP031971.1_180818_180998_+	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|373aa|down_0|CP031971.1_181738_182857_+	cd01941, YeiC_kinase_like, YeiC-like sugar kinase	NA|307aa|down_1|CP031971.1_182828_183749_+	pfam04227, Indigoidine_A, Indigoidine synthase A like protein	NA|228aa|down_2|CP031971.1_184207_184891_+	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|520aa|down_3|CP031971.1_185767_187327_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|107aa|down_4|CP031971.1_187350_187671_+	COG3070, TfoX, Regulator of competence-specific genes [Transcription]	NA|120aa|down_5|CP031971.1_187731_188091_+	NA	NA|875aa|down_6|CP031971.1_188172_190797_-	PRK09279, PRK09279, pyruvate phosphate dikinase; Provisional	NA|269aa|down_7|CP031971.1_190809_191616_-	pfam03618, Kinase-PPPase, Kinase/pyrophosphorylase	NA|471aa|down_8|CP031971.1_191814_193227_+	cd16913, YkuD_like, L,D-transpeptidases/carboxypeptidases similar to Bacillus YkuD	NA|1030aa|down_9|CP031971.1_193515_196605_+	COG4932, COG4932, Predicted outer membrane protein [Cell envelope biogenesis, outer membrane]
GCA_003454775.1_ASM345477v1	CP031971	Parvimonas micra strain KCOM 1037 chromosome, complete genome	5	902609-902719	5	CRISPRCasFinder	no		WYL,RT,PD-DExK,DEDDh,cas3,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas6	Orphan	TATAGTTTATCACAAGGCATAAAACT	26	0	0	NA	NA	NA	1	1	Orphan	WYL,RT,PD-DExK,DEDDh,cas3,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas6	NA,NA	NA|349aa|up_9|CP031971.1_889405_890452_-	cd13544, PBP2_Fbp_like_1, Substrate binding domain of a putative ferric iron transporter, a member of the type 2 periplasmic binding fold superfamily	NA|465aa|up_8|CP031971.1_890832_892227_+	cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA	NA|357aa|up_7|CP031971.1_892372_893443_-	PRK09377, tsf, elongation factor Ts; Provisional	NA|256aa|up_6|CP031971.1_893536_894304_-	PRK05299, rpsB, 30S ribosomal protein S2; Provisional	NA|93aa|up_5|CP031971.1_894498_894777_-	cd13831, HU, histone-like DNA-binding protein HU	NA|329aa|up_4|CP031971.1_894895_895882_-	PRK00059, prsA, peptidylprolyl isomerase; Provisional	NA|1169aa|up_3|CP031971.1_895956_899463_-	COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]	NA|196aa|up_2|CP031971.1_899499_900087_-	pfam01195, Pept_tRNA_hydro, Peptidyl-tRNA hydrolase	NA|321aa|up_1|CP031971.1_900076_901039_-	PRK01259, PRK01259, ribose-phosphate diphosphokinase	NA|462aa|up_0|CP031971.1_901055_902441_-	PRK14354, glmU, bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA|192aa|down_0|CP031971.1_902804_903380_-	pfam09605, Trep_Strep, Hypothetical bacterial integral membrane protein (Trep_Strep)	NA|476aa|down_1|CP031971.1_903369_904797_-	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|231aa|down_2|CP031971.1_904774_905467_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|577aa|down_3|CP031971.1_905659_907390_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|579aa|down_4|CP031971.1_907377_909114_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|232aa|down_5|CP031971.1_909361_910057_-	PRK05424, rplA, 50S ribosomal protein L1; Validated	NA|142aa|down_6|CP031971.1_910103_910529_-	PRK00140, rplK, 50S ribosomal protein L11; Validated	NA|180aa|down_7|CP031971.1_910629_911169_-	PRK05609, nusG, transcription antitermination protein NusG; Validated	NA|69aa|down_8|CP031971.1_911202_911409_-	pfam00584, SecE, SecE/Sec61-gamma subunits of protein translocation complex	NA|50aa|down_9|CP031971.1_911431_911581_-	PRK00504, rpmG, 50S ribosomal protein L33; Validated
GCA_003454775.1_ASM345477v1	CP031971	Parvimonas micra strain KCOM 1037 chromosome, complete genome	6	953071-954676	6,1,1,2	CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no	cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas6	WYL,RT,PD-DExK,DEDDh,cas3,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas6	Type III-C,Type III-B,Type III-A,Type III-D	ATTTACATTACAGTATGTTTCTATTTAAAC,ATTTACATTACAGTATGTTTCTATTTAAAC,ATTTACATTACAGTATGTTTCTATTTAAAC,ATTTACATTACAGTATGTTTCTATTTAAAC	30,30,30,30	0	0	NA	NA	NA:NA:NA:NA	24,24,20,20	24	TypeIII-C,TypeIII-B,TypeIII-A,TypeIII-D	WYL,RT,PD-DExK,DEDDh,cas3,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas6	NA|162aa|up_1|CP031971.1_951710_952196_-,NA|187aa|up_0|CP031971.1_952293_952854_-,cmr5gr11|153aa|down_1|CP031971.1_955677_956136_-,cmr1gr7|454aa|down_5|CP031971.1_959754_961116_-,NA|229aa|down_8|CP031971.1_963571_964258_-	NA|544aa|up_9|CP031971.1_940652_942284_-	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|95aa|up_8|CP031971.1_942295_942580_-	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|639aa|up_7|CP031971.1_942790_944707_-	PRK05901, PRK05901, RNA polymerase sigma factor; Provisional	NA|339aa|up_6|CP031971.1_944716_945733_-	pfam01297, ZnuA, Zinc-uptake complex component A periplasmic	NA|350aa|up_5|CP031971.1_945885_946935_-	PRK09614, nrdF, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|842aa|up_4|CP031971.1_946947_949473_-	PRK12364, PRK12364, ribonucleoside-diphosphate reductase subunit alpha	NA|212aa|up_3|CP031971.1_949708_950344_+	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed	NA|234aa|up_2|CP031971.1_950710_951412_-	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|162aa|up_1|CP031971.1_951710_952196_-	NA	NA|187aa|up_0|CP031971.1_952293_952854_-	NA	cmr6gr7|262aa|down_0|CP031971.1_954914_955700_-	TIGR01898, repair_system, CRISPR type III-B/RAMP module RAMP protein Cmr6	cmr5gr11|153aa|down_1|CP031971.1_955677_956136_-	NA	cmr4gr7|285aa|down_2|CP031971.1_956150_957005_-	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4	cmr3gr5|405aa|down_3|CP031971.1_956980_958195_-	TIGR01888, Hypothetical_protein_SSO1730, CRISPR type III-B/RAMP module-associated protein Cmr3	cas10|522aa|down_4|CP031971.1_958199_959765_-	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10	cmr1gr7|454aa|down_5|CP031971.1_959754_961116_-	NA	NA|516aa|down_6|CP031971.1_961141_962689_-	COG0598, CorA, Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]	cas6|247aa|down_7|CP031971.1_962751_963492_-	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	NA|229aa|down_8|CP031971.1_963571_964258_-	NA	NA|658aa|down_9|CP031971.1_964401_966375_-	COG0021, TktA, Transketolase [Carbohydrate transport and metabolism]
GCA_003454775.1_ASM345477v1	CP031971	Parvimonas micra strain KCOM 1037 chromosome, complete genome	7	1207897-1208031	7	CRISPRCasFinder	no		WYL,RT,PD-DExK,DEDDh,cas3,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas6	Orphan	GATGAAATTATTGTACCTTTATCACAAGGCATAAAGCTACAATAATTATA	50	0	0	NA	NA	NA	1	1	Orphan	WYL,RT,PD-DExK,DEDDh,cas3,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas6	NA,NA|260aa|down_4|CP031971.1_1211594_1212374_+,NA|140aa|down_9|CP031971.1_1217223_1217643_-	NA|273aa|up_9|CP031971.1_1197588_1198407_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|285aa|up_8|CP031971.1_1198406_1199261_-	TIGR04521, ECF_ATPase_2, energy-coupling factor transporter ATPase	NA|282aa|up_7|CP031971.1_1199260_1200106_-	TIGR04520, ECF_ATPase_1, energy-coupling factor transporter ATPase	NA|593aa|up_6|CP031971.1_1200298_1202077_-	COG4750, LicC, CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]	NA|503aa|up_5|CP031971.1_1202193_1203702_-	cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins	NA|271aa|up_4|CP031971.1_1203721_1204534_-	COG3475, COG3475, LPS biosynthesis protein [Cell envelope biogenesis, outer membrane]	NA|270aa|up_3|CP031971.1_1204543_1205353_-	COG3475, COG3475, LPS biosynthesis protein [Cell envelope biogenesis, outer membrane]	NA|326aa|up_2|CP031971.1_1205352_1206330_-	pfam00535, Glycos_transf_2, Glycosyl transferase family 2	NA|265aa|up_1|CP031971.1_1206444_1207239_-	cd05826, Sortase_B, Sortase domain found in class B sortases	NA|167aa|up_0|CP031971.1_1207242_1207743_-	pfam00186, DHFR_1, Dihydrofolate reductase	NA|228aa|down_0|CP031971.1_1208146_1208830_-	TIGR03943, TIGR03943, TIGR03943 family protein	NA|273aa|down_1|CP031971.1_1208822_1209641_-	COG1108, ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism]	NA|224aa|down_2|CP031971.1_1209633_1210305_-	COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]	NA|343aa|down_3|CP031971.1_1210304_1211333_-	pfam01297, ZnuA, Zinc-uptake complex component A periplasmic	NA|260aa|down_4|CP031971.1_1211594_1212374_+	NA	NA|492aa|down_5|CP031971.1_1212393_1213869_+	PRK09243, PRK09243, nicotinate phosphoribosyltransferase; Validated	NA|227aa|down_6|CP031971.1_1213938_1214619_-	pfam16949, ABC_tran_2, Putative ATP-binding cassette	NA|244aa|down_7|CP031971.1_1215625_1216357_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|243aa|down_8|CP031971.1_1216502_1217231_-	pfam13930, Endonuclea_NS_2, DNA/RNA non-specific endonuclease	NA|140aa|down_9|CP031971.1_1217223_1217643_-	NA
