assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003443795.1_ASM344379v1	CP029687	Escherichia coli strain E706 chromosome, complete genome	1	948798-949741	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cse2gr11	c2c9_V-U4,cas3,csa3,PD-DExK,cse2gr11,cas5,cas6e,cas1,cas2,cas14j,DEDDh,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	14,15,15	15	TypeI-E	c2c9_V-U4,cas3,csa3,PD-DExK,cse2gr11,cas5,cas6e,cas1,cas2,cas14j,DEDDh,DinG	NA,NA	NA|919aa|up_9|CP029687.1_935390_938147_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|434aa|up_8|CP029687.1_938203_939505_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_7|CP029687.1_939552_941787_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_6|CP029687.1_941864_942113_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_5|CP029687.1_942112_942448_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_4|CP029687.1_942518_943310_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_3|CP029687.1_943537_945175_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_2|CP029687.1_945262_946561_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_1|CP029687.1_946620_947493_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|224aa|up_0|CP029687.1_947786_948458_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|CP029687.1_950379_951858_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|CP029687.1_951884_953162_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|CP029687.1_953481_954267_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|CP029687.1_954336_955791_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|446aa|down_4|CP029687.1_955884_957222_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|287aa|down_5|CP029687.1_957975_958836_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_6|CP029687.1_958983_959559_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_7|CP029687.1_959575_959836_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_8|CP029687.1_959826_961098_-	PRK10015, PRK10015, oxidoreductase; Provisional	NA|122aa|down_9|CP029687.1_961175_961541_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)
GCA_003443795.1_ASM344379v1	CP029687	Escherichia coli strain E706 chromosome, complete genome	2	973238-973452	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cse2gr11,cas5,cas6e,cas1,cas2	c2c9_V-U4,cas3,csa3,PD-DExK,cse2gr11,cas5,cas6e,cas1,cas2,cas14j,DEDDh,DinG	Type I-E	GGAGAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG	32,29,29	0	0	NA	NA	I-E:I-E:I-E	3,3,3	3	TypeI-E	c2c9_V-U4,cas3,csa3,PD-DExK,cse2gr11,cas5,cas6e,cas1,cas2,cas14j,DEDDh,DinG	NA,NA	NA|424aa|up_9|CP029687.1_959826_961098_-	PRK10015, PRK10015, oxidoreductase; Provisional	NA|122aa|up_8|CP029687.1_961175_961541_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|up_7|CP029687.1_961856_963656_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|up_6|CP029687.1_963655_965368_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_5|CP029687.1_965441_966176_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	cse2gr11|161aa|up_4|CP029687.1_968337_968820_-	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas5|225aa|up_3|CP029687.1_970654_971329_+	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas6e|200aa|up_2|CP029687.1_971315_971915_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|306aa|up_1|CP029687.1_971930_972848_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|95aa|up_0|CP029687.1_972849_973134_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|CP029687.1_975795_976833_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|CP029687.1_977084_977993_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|CP029687.1_977994_979422_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|CP029687.1_979421_980027_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|CP029687.1_980076_980400_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|CP029687.1_980593_980905_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|CP029687.1_980923_981634_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|CP029687.1_981633_982113_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|CP029687.1_982109_983159_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|CP029687.1_983139_983901_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCA_003443795.1_ASM344379v1	CP029687	Escherichia coli strain E706 chromosome, complete genome	3	974832-975775	3,3,3	PILER-CR,CRISPRCasFinder,CRT	no	cse2gr11,cas5,cas6e,cas1,cas2	c2c9_V-U4,cas3,csa3,PD-DExK,cse2gr11,cas5,cas6e,cas1,cas2,cas14j,DEDDh,DinG	Type I-E	GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	13,15,15	15	TypeI-E	c2c9_V-U4,cas3,csa3,PD-DExK,cse2gr11,cas5,cas6e,cas1,cas2,cas14j,DEDDh,DinG	NA,NA	NA|424aa|up_9|CP029687.1_959826_961098_-	PRK10015, PRK10015, oxidoreductase; Provisional	NA|122aa|up_8|CP029687.1_961175_961541_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|up_7|CP029687.1_961856_963656_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|up_6|CP029687.1_963655_965368_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_5|CP029687.1_965441_966176_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	cse2gr11|161aa|up_4|CP029687.1_968337_968820_-	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas5|225aa|up_3|CP029687.1_970654_971329_+	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas6e|200aa|up_2|CP029687.1_971315_971915_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|306aa|up_1|CP029687.1_971930_972848_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|95aa|up_0|CP029687.1_972849_973134_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|CP029687.1_975795_976833_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|CP029687.1_977084_977993_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|CP029687.1_977994_979422_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|CP029687.1_979421_980027_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|CP029687.1_980076_980400_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|CP029687.1_980593_980905_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|CP029687.1_980923_981634_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|CP029687.1_981633_982113_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|CP029687.1_982109_983159_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|CP029687.1_983139_983901_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCA_003443795.1_ASM344379v1	CP029687	Escherichia coli strain E706 chromosome, complete genome	4	1530311-1530428	4	CRISPRCasFinder	no	cas14j	c2c9_V-U4,cas3,csa3,PD-DExK,cse2gr11,cas5,cas6e,cas1,cas2,cas14j,DEDDh,DinG	Unclear	CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	31	0	0	NA	NA	NA	1	1	TypeV	c2c9_V-U4,cas3,csa3,PD-DExK,cse2gr11,cas5,cas6e,cas1,cas2,cas14j,DEDDh,DinG	NA,NA	NA|397aa|up_9|CP029687.1_1517922_1519113_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|420aa|up_8|CP029687.1_1519109_1520369_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_7|CP029687.1_1520358_1521987_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_6|CP029687.1_1522259_1523618_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|360aa|up_5|CP029687.1_1523622_1524702_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|293aa|up_4|CP029687.1_1524746_1525625_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|308aa|up_3|CP029687.1_1526133_1527057_+	pfam13737, DDE_Tnp_1_5, Transposase DDE domain	NA|217aa|up_2|CP029687.1_1528125_1528776_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|CP029687.1_1528829_1529084_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|CP029687.1_1529083_1530214_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|CP029687.1_1530447_1532733_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|1253aa|down_1|CP029687.1_1533428_1537187_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|241aa|down_2|CP029687.1_1537326_1538049_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_3|CP029687.1_1538195_1540823_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|563aa|down_4|CP029687.1_1540969_1542658_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_5|CP029687.1_1542654_1543278_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1535aa|down_6|CP029687.1_1543211_1547816_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|550aa|down_7|CP029687.1_1547816_1549466_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|259aa|down_8|CP029687.1_1549470_1550247_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|950aa|down_9|CP029687.1_1550521_1553371_+	PRK10841, PRK10841, two-component system sensor histidine kinase RcsC
GCA_003443795.1_ASM344379v1	CP029687	Escherichia coli strain E706 chromosome, complete genome	5	2196735-2196858	5	CRISPRCasFinder	no	DEDDh	c2c9_V-U4,cas3,csa3,PD-DExK,cse2gr11,cas5,cas6e,cas1,cas2,cas14j,DEDDh,DinG	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,csa3,PD-DExK,cse2gr11,cas5,cas6e,cas1,cas2,cas14j,DEDDh,DinG	NA,NA|75aa|down_7|CP029687.1_2205443_2205668_-,NA|30aa|down_8|CP029687.1_2205754_2205844_+	NA|79aa|up_9|CP029687.1_2185645_2185882_-	PRK15396, PRK15396, major outer membrane lipoprotein	NA|471aa|up_8|CP029687.1_2186192_2187605_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_7|CP029687.1_2188161_2188371_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_6|CP029687.1_2188825_2189452_+	PRK09898, PRK09898, ferredoxin-like protein	NA|224aa|up_5|CP029687.1_2191576_2192248_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|CP029687.1_2192286_2192955_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|CP029687.1_2192951_2193737_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|CP029687.1_2193740_2194553_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|CP029687.1_2194564_2196169_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|CP029687.1_2196294_2196600_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|CP029687.1_2197172_2198429_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|CP029687.1_2198469_2199843_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|CP029687.1_2200057_2200699_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|CP029687.1_2200738_2201887_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|CP029687.1_2202177_2203389_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|CP029687.1_2203501_2204434_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|CP029687.1_2204430_2205456_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|75aa|down_7|CP029687.1_2205443_2205668_-	NA	NA|30aa|down_8|CP029687.1_2205754_2205844_+	NA	NA|390aa|down_9|CP029687.1_2206009_2207179_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]
GCA_003443795.1_ASM344379v1	CP029687	Escherichia coli strain E706 chromosome, complete genome	7	2997899-2997982	7	CRISPRCasFinder	no		c2c9_V-U4,cas3,csa3,PD-DExK,cse2gr11,cas5,cas6e,cas1,cas2,cas14j,DEDDh,DinG	Orphan	ATCTGCCTGTACGGCAGTGAACT	23	0	0	NA	NA	I-F	1	1	Orphan	c2c9_V-U4,cas3,csa3,PD-DExK,cse2gr11,cas5,cas6e,cas1,cas2,cas14j,DEDDh,DinG	NA,NA	NA|431aa|up_9|CP029687.1_2982802_2984095_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|448aa|up_8|CP029687.1_2984185_2985529_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|204aa|up_7|CP029687.1_2985539_2986151_-	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|1343aa|up_6|CP029687.1_2986305_2990334_-	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|165aa|up_5|CP029687.1_2990468_2990963_-	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|322aa|up_4|CP029687.1_2991507_2992473_+	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|589aa|up_3|CP029687.1_2992595_2994362_+	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|574aa|up_2|CP029687.1_2994362_2996084_+	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|235aa|up_1|CP029687.1_2996125_2996830_+	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|73aa|up_0|CP029687.1_2997114_2997333_+	PRK00276, infA, translation initiation factor IF-1; Validated	NA|759aa|down_0|CP029687.1_2998193_3000470_-	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|107aa|down_1|CP029687.1_3000500_3000821_-	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|75aa|down_2|CP029687.1_3001143_3001368_+	PRK09937, PRK09937, cold shock-like protein CspD	NA|649aa|down_3|CP029687.1_3001440_3003387_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|372aa|down_4|CP029687.1_3003383_3004499_-	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|331aa|down_5|CP029687.1_3004613_3005606_+	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|553aa|down_6|CP029687.1_3005602_3007261_-	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|300aa|down_7|CP029687.1_3008882_3009782_+	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|551aa|down_8|CP029687.1_3009925_3011578_+	PRK05290, PRK05290, hybrid cluster protein; Provisional	NA|323aa|down_9|CP029687.1_3011589_3012558_+	PRK10684, PRK10684, HCP oxidoreductase, NADH-dependent; Provisional
GCA_003443795.1_ASM344379v1	CP029687	Escherichia coli strain E706 chromosome, complete genome	8	3153982-3154126	8	CRISPRCasFinder	no		c2c9_V-U4,cas3,csa3,PD-DExK,cse2gr11,cas5,cas6e,cas1,cas2,cas14j,DEDDh,DinG	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,csa3,PD-DExK,cse2gr11,cas5,cas6e,cas1,cas2,cas14j,DEDDh,DinG	NA|60aa|up_1|CP029687.1_3152395_3152575_+,NA|70aa|down_9|CP029687.1_3164846_3165056_-	NA|303aa|up_9|CP029687.1_3143266_3144175_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|674aa|up_8|CP029687.1_3144366_3146388_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|226aa|up_7|CP029687.1_3146966_3147644_-	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD	NA|252aa|up_6|CP029687.1_3147636_3148392_-	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional	NA|385aa|up_5|CP029687.1_3148378_3149533_-	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed	NA|347aa|up_4|CP029687.1_3149529_3150570_-	PRK15108, PRK15108, biotin synthase; Provisional	NA|430aa|up_3|CP029687.1_3150656_3151946_+	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated	NA|159aa|up_2|CP029687.1_3152004_3152481_+	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional	NA|60aa|up_1|CP029687.1_3152395_3152575_+	NA	NA|428aa|up_0|CP029687.1_3152632_3153916_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|CP029687.1_3154149_3156411_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|CP029687.1_3156593_3158027_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|CP029687.1_3158102_3159155_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_3|CP029687.1_3159338_3160292_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_4|CP029687.1_3160332_3161328_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_5|CP029687.1_3161482_3162301_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_6|CP029687.1_3162301_3163360_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_7|CP029687.1_3163362_3164052_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_8|CP029687.1_3164051_3164825_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|70aa|down_9|CP029687.1_3164846_3165056_-	NA
GCA_003443795.1_ASM344379v1	CP029687	Escherichia coli strain E706 chromosome, complete genome	9	3382839-3382935	9	CRISPRCasFinder	no		c2c9_V-U4,cas3,csa3,PD-DExK,cse2gr11,cas5,cas6e,cas1,cas2,cas14j,DEDDh,DinG	Orphan	TTGTAGGCCTGATAAGATGCGTCAAGC	27	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,csa3,PD-DExK,cse2gr11,cas5,cas6e,cas1,cas2,cas14j,DEDDh,DinG	NA,NA	NA|347aa|up_9|CP029687.1_3372855_3373896_-	PRK15199, fimH, type 1 fimbrin D-mannose specific adhesin FimH	NA|233aa|up_8|CP029687.1_3375065_3375763_-	pfam03400, DDE_Tnp_IS1, IS1 transposase	NA|289aa|up_7|CP029687.1_3376559_3377426_+	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|71aa|up_6|CP029687.1_3377427_3377640_+	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|174aa|up_5|CP029687.1_3377747_3378269_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|462aa|up_4|CP029687.1_3378304_3379690_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|165aa|up_3|CP029687.1_3379863_3380358_+	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|241aa|up_2|CP029687.1_3380360_3381083_+	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|170aa|up_1|CP029687.1_3381200_3381710_+	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|356aa|up_0|CP029687.1_3381706_3382774_+	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|298aa|down_0|CP029687.1_3382968_3383862_-	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|272aa|down_1|CP029687.1_3383858_3384674_-	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|420aa|down_2|CP029687.1_3384684_3385944_-	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|556aa|down_3|CP029687.1_3385953_3387621_-	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|350aa|down_4|CP029687.1_3387937_3388987_+	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|412aa|down_5|CP029687.1_3389008_3390244_+	TIGR03176, AllC, allantoate amidohydrolase	NA|188aa|down_6|CP029687.1_3390254_3390818_+	COG3257, GlxB, Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]	NA|339aa|down_7|CP029687.1_3390926_3391943_-	COG3039, COG3039, Transposase and inactivated derivatives, IS5 family [DNA replication, recombination, and repair]	NA|382aa|down_8|CP029687.1_3392466_3393612_-	PRK09932, PRK09932, glycerate 3-kinase	NA|434aa|down_9|CP029687.1_3393633_3394935_-	PRK11412, PRK11412, uracil/xanthine transporter
GCA_003443795.1_ASM344379v1	CP029687	Escherichia coli strain E706 chromosome, complete genome	10	3525832-3525976	10	CRISPRCasFinder	no		c2c9_V-U4,cas3,csa3,PD-DExK,cse2gr11,cas5,cas6e,cas1,cas2,cas14j,DEDDh,DinG	Orphan	TTTTGCAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCAT	43	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,csa3,PD-DExK,cse2gr11,cas5,cas6e,cas1,cas2,cas14j,DEDDh,DinG	NA,NA|66aa|down_5|CP029687.1_3529653_3529851_-	NA|357aa|up_9|CP029687.1_3510970_3512041_-	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional	NA|194aa|up_8|CP029687.1_3512133_3512715_+	PRK10045, PRK10045, ACP phosphodiesterase	NA|605aa|up_7|CP029687.1_3512719_3514534_-	PRK10785, PRK10785, maltodextrin glucosidase; Provisional	NA|458aa|up_6|CP029687.1_3514692_3516066_-	PRK10580, proY, putative proline-specific permease; Provisional	NA|440aa|up_5|CP029687.1_3516141_3517461_-	PRK15433, PRK15433, branched-chain amino acid transporter carrier protein BrnQ	NA|432aa|up_4|CP029687.1_3517867_3519163_-	PRK11006, phoR, phosphate regulon sensor histidine kinase PhoR	NA|230aa|up_3|CP029687.1_3519220_3519910_-	PRK10161, PRK10161, phosphate response regulator transcription factor PhoB	NA|401aa|up_2|CP029687.1_3520099_3521302_+	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional	NA|1049aa|up_1|CP029687.1_3521298_3524445_+	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional	NA|395aa|up_0|CP029687.1_3524570_3525755_+	PRK10091, PRK10091, MFS transport protein AraJ; Provisional	NA|303aa|down_0|CP029687.1_3525999_3526908_-	PRK09557, PRK09557, fructokinase; Reviewed	NA|304aa|down_1|CP029687.1_3527032_3527944_+	COG2974, RdgC, DNA recombination-dependent growth factor C [DNA replication, recombination, and repair]	NA|94aa|down_2|CP029687.1_3528101_3528383_-	pfam10971, DUF2773, Protein of unknown function (DUF2773)	NA|95aa|down_3|CP029687.1_3528590_3528875_-	PRK10579, PRK10579, pyrimidine/purine nucleoside phosphorylase	NA|226aa|down_4|CP029687.1_3528946_3529624_-	PRK10481, PRK10481, hypothetical protein; Provisional	NA|66aa|down_5|CP029687.1_3529653_3529851_-	NA	NA|64aa|down_6|CP029687.1_3529881_3530073_-	PRK10380, PRK10380, hypothetical protein; Provisional	NA|175aa|down_7|CP029687.1_3530122_3530647_-	PRK03731, aroL, shikimate kinase AroL	NA|155aa|down_8|CP029687.1_3530823_3531288_-	PRK00124, PRK00124, YaiI/YqxD family protein	NA|270aa|down_9|CP029687.1_3531407_3532217_+	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed
GCA_003443795.1_ASM344379v1	CP029687	Escherichia coli strain E706 chromosome, complete genome	11	3915987-3916121	11	CRISPRCasFinder	no		c2c9_V-U4,cas3,csa3,PD-DExK,cse2gr11,cas5,cas6e,cas1,cas2,cas14j,DEDDh,DinG	Orphan	GGCCTACACGCTGCGATTTTGTAGGCCGGATAAGCAAAGCGCATCCGGCA	50	1	2	3916037-3916071|3916037-3916071	CP029687.1_3980571-3980537|CP029687.1_847134-847100	NA	1	1	Orphan	c2c9_V-U4,cas3,csa3,PD-DExK,cse2gr11,cas5,cas6e,cas1,cas2,cas14j,DEDDh,DinG	NA,NA	NA|393aa|up_9|CP029687.1_3903970_3905149_-	TIGR00899, Sugar_efflux_transporter_A, sugar efflux transporter	NA|44aa|up_8|CP029687.1_3905250_3905382_-	pfam15894, SgrT, Inhibitor of glucose uptake transporter SgrT	NA|552aa|up_7|CP029687.1_3905470_3907126_+	PRK13626, PRK13626, HTH-type transcriptional regulator SgrR	NA|328aa|up_6|CP029687.1_3907289_3908273_+	PRK11205, tbpA, thiamine transporter substrate binding subunit; Provisional	NA|537aa|up_5|CP029687.1_3908248_3909859_+	PRK09433, thiP, thiamine transporter membrane protein; Reviewed	NA|233aa|up_4|CP029687.1_3909842_3910541_+	PRK10771, thiQ, thiamine ABC transporter ATP-binding protein ThiQ	NA|255aa|up_3|CP029687.1_3910654_3911419_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|282aa|up_2|CP029687.1_3911537_3912383_-	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC	NA|567aa|up_1|CP029687.1_3912721_3914422_+	PRK04123, PRK04123, ribulokinase; Provisional	NA|501aa|up_0|CP029687.1_3914432_3915935_+	PRK02929, PRK02929, L-arabinose isomerase; Provisional	NA|232aa|down_0|CP029687.1_3916134_3916830_+	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD	NA|784aa|down_1|CP029687.1_3916904_3919256_+	PRK05762, PRK05762, DNA polymerase II; Reviewed	NA|969aa|down_2|CP029687.1_3919420_3922327_+	PRK04914, PRK04914, RNA polymerase-associated protein RapA	NA|220aa|down_3|CP029687.1_3922338_3922998_+	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA	NA|265aa|down_4|CP029687.1_3923446_3924241_-	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]	NA|272aa|down_5|CP029687.1_3924535_3925351_-	PRK09430, djlA, co-chaperone DjlA	NA|785aa|down_6|CP029687.1_3925605_3927960_+	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional	NA|429aa|down_7|CP029687.1_3928012_3929299_+	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional	NA|330aa|down_8|CP029687.1_3929298_3930288_+	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed	NA|274aa|down_9|CP029687.1_3930284_3931106_+	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA
GCA_003443795.1_ASM344379v1	CP029687	Escherichia coli strain E706 chromosome, complete genome	12	3947974-3948115	12	CRISPRCasFinder	no		c2c9_V-U4,cas3,csa3,PD-DExK,cse2gr11,cas5,cas6e,cas1,cas2,cas14j,DEDDh,DinG	Orphan	GCTGGAGAGCAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGA	52	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,csa3,PD-DExK,cse2gr11,cas5,cas6e,cas1,cas2,cas14j,DEDDh,DinG	NA,NA|60aa|down_1|CP029687.1_3948574_3948754_+	NA|96aa|up_9|CP029687.1_3936964_3937252_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_8|CP029687.1_3937248_3938535_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_7|CP029687.1_3938585_3939527_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_6|CP029687.1_3939541_3940312_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|up_5|CP029687.1_3940785_3942300_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|up_4|CP029687.1_3942330_3943473_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|up_3|CP029687.1_3943601_3944819_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|up_2|CP029687.1_3944892_3946446_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|up_1|CP029687.1_3946554_3947340_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|up_0|CP029687.1_3947345_3947936_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_0|CP029687.1_3948144_3948540_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|60aa|down_1|CP029687.1_3948574_3948754_+	NA	NA|1074aa|down_2|CP029687.1_3948801_3952023_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_3|CP029687.1_3952040_3953189_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_4|CP029687.1_3953644_3954466_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]	NA|305aa|down_5|CP029687.1_3954632_3955547_-	PRK10768, PRK10768, ribonucleoside hydrolase RihC; Provisional	NA|317aa|down_6|CP029687.1_3955612_3956563_-	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed	NA|150aa|down_7|CP029687.1_3956564_3957014_-	PRK15095, PRK15095, FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional	NA|165aa|down_8|CP029687.1_3957138_3957633_-	PRK00376, lspA, lipoprotein signal peptidase	NA|939aa|down_9|CP029687.1_3957632_3960449_-	PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed
