assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003443395.1_ASM344339v1	CP031881	Streptococcus thermophilus strain ST106 chromosome, complete genome	1	630774-634432	1,1,1,2,3	PILER-CR,CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no	cas9,cas1,cas2,csn2	DEDDh,cas9,cas1,cas2,csn2,DinG,cas6,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas3,csa3	Type II-B,Type II-A,Type II-C	GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC,GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC,GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC,GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC,GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	36,36,36,36,36	0	0	NA	NA	NA:NA:NA:NA:NA	52,55,55,52,52	55	TypeII-B,TypeII-A,TypeII-C	DEDDh,cas9,cas1,cas2,csn2,DinG,cas6,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas3,csa3	NA|121aa|up_5|CP031881.1_622451_622814_+,NA|62aa|down_3|CP031881.1_636386_636572_-	NA|392aa|up_9|CP031881.1_617646_618822_-	pfam00872, Transposase_mut, Transposase, Mutator family	NA|66aa|up_8|CP031881.1_620412_620610_-	pfam03029, ATP_bind_1, Conserved hypothetical ATP binding protein	NA|131aa|up_7|CP031881.1_621305_621698_+	pfam08349, DUF1722, Protein of unknown function (DUF1722)	NA|121aa|up_6|CP031881.1_621694_622057_+	TIGR02328, TIGR02328, conserved hypothetical protein	NA|121aa|up_5|CP031881.1_622451_622814_+	NA	NA|204aa|up_4|CP031881.1_624019_624631_+	pfam09911, DUF2140, Uncharacterized protein conserved in bacteria (DUF2140)	cas9|1121aa|up_3|CP031881.1_624886_628249_+	cd09643, Csn1, CRISPR/Cas system-associated protein Cas9	cas1|304aa|up_2|CP031881.1_628425_629337_+	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas2|108aa|up_1|CP031881.1_629338_629662_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	csn2|351aa|up_0|CP031881.1_629658_630711_+	pfam16813, Cas_St_Csn2, CRISPR-associated protein Csn2 subfamily St	NA|451aa|down_0|CP031881.1_634492_635845_-	pfam03050, DDE_Tnp_IS66, Transposase IS66 family	NA|69aa|down_1|CP031881.1_635798_636005_-	pfam13007, LZ_Tnp_IS66, Transposase C of IS166 homeodomain	NA|117aa|down_2|CP031881.1_636055_636406_-	pfam05717, TnpB_IS66, IS66 Orf2 like protein	NA|62aa|down_3|CP031881.1_636386_636572_-	NA	NA|272aa|down_4|CP031881.1_636709_637525_-	COG3689, COG3689, Predicted membrane protein [Function unknown]	NA|300aa|down_5|CP031881.1_637524_638424_-	COG0701, COG0701, Predicted permeases [General function prediction only]	NA|711aa|down_6|CP031881.1_638787_640920_+	COG2183, Tex, Transcriptional accessory protein [Transcription]	NA|147aa|down_7|CP031881.1_640906_641347_+	PRK04351, PRK04351, SprT family protein	NA|88aa|down_8|CP031881.1_641411_641675_+	COG1983, PspC, Putative stress-responsive transcriptional regulator [Transcription / Signal transduction mechanisms]	NA|310aa|down_9|CP031881.1_641802_642732_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional
GCA_003443395.1_ASM344339v1	CP031881	Streptococcus thermophilus strain ST106 chromosome, complete genome	2	869580-871078	4,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas1,cas2,cas6,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6	DEDDh,cas9,cas1,cas2,csn2,DinG,cas6,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas3,csa3	Type III-A	GATATAGACCTAATTACCTCGAGAGGGGACGGAAAC,GATATAGACCTAATTACCTCGAGAGGGGACGGAAAC,GATATAGACCTAATTACCTCGAGAGGGGACGGAAAC	36,36,36	5	7	869616-869653|869616-869653|869616-869653|869983-870018|870055-870091|870128-870163|870354-870390	CP031881.1_47649-47686|CP031881.1_207410-207447|CP031881.1_83351-83314|CP031881.1_1645620-1645655|CP031881.1_191536-191572|CP031881.1_360211-360246|CP031881.1_910171-910207	II-B,III-A:II-B,III-A:II-B,III-A	19,20,20	20	TypeIII-A	DEDDh,cas9,cas1,cas2,csn2,DinG,cas6,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas3,csa3	NA|70aa|up_7|CP031881.1_862489_862699_+,NA	NA|89aa|up_9|CP031881.1_859384_859651_-	cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA	NA|392aa|up_8|CP031881.1_861291_862467_-	pfam00872, Transposase_mut, Transposase, Mutator family	NA|70aa|up_7|CP031881.1_862489_862699_+	NA	NA|553aa|up_6|CP031881.1_862648_864307_-	pfam05833, FbpA, Fibronectin-binding protein A N-terminus (FbpA)	NA|230aa|up_5|CP031881.1_864624_865314_+	pfam05857, TraX, TraX protein	NA|183aa|up_4|CP031881.1_865447_865996_+	cd03135, GATase1_DJ-1, Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1	NA|268aa|up_3|CP031881.1_866237_867041_+	PRK00054, PRK00054, dihydroorotate dehydrogenase electron transfer subunit; Reviewed	NA|316aa|up_2|CP031881.1_867059_868007_+	PRK07259, PRK07259, dihydroorotate dehydrogenase	cas1|335aa|up_1|CP031881.1_868145_869150_+	cd09634, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1	cas2|110aa|up_0|CP031881.1_869149_869479_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas6|244aa|down_0|CP031881.1_871208_871940_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	csm2gr11|131aa|down_1|CP031881.1_874199_874592_+	pfam03750, Csm2_III-A, Csm2 Type III-A	csm3gr7|221aa|down_2|CP031881.1_874591_875254_+	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm4gr5|300aa|down_3|CP031881.1_875255_876155_+	pfam17953, Csm4_C, CRISPR Csm4 C-terminal domain	csm5gr7|353aa|down_4|CP031881.1_876157_877216_+	cd09662, Csm5_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm5	csm6|429aa|down_5|CP031881.1_878386_879673_+	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	NA|232aa|down_6|CP031881.1_879871_880567_+	PRK00230, PRK00230, orotidine-5'-phosphate decarboxylase	NA|210aa|down_7|CP031881.1_880655_881285_+	PRK00455, pyrE, orotate phosphoribosyltransferase; Validated	NA|484aa|down_8|CP031881.1_881980_883432_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|392aa|down_9|CP031881.1_883572_884748_-	pfam00872, Transposase_mut, Transposase, Mutator family
GCA_003443395.1_ASM344339v1	CP031881	Streptococcus thermophilus strain ST106 chromosome, complete genome	3	1588442-1588533	3	CRISPRCasFinder	no	cas3	DEDDh,cas9,cas1,cas2,csn2,DinG,cas6,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas3,csa3	Unclear	CTTTTCTTTACGATATCAATTTTAACATCTTT	32	0	0	NA	NA	NA	1	1	Unclear	DEDDh,cas9,cas1,cas2,csn2,DinG,cas6,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas3,csa3	NA|86aa|up_3|CP031881.1_1584061_1584319_-,NA|143aa|down_7|CP031881.1_1594436_1594865_-,NA|64aa|down_8|CP031881.1_1596047_1596239_-	cas3|673aa|up_9|CP031881.1_1575511_1577530_-	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|368aa|up_8|CP031881.1_1577658_1578762_-	PRK00053, alr, alanine racemase; Reviewed	NA|120aa|up_7|CP031881.1_1578782_1579142_-	PRK00070, acpS, 4'-phosphopantetheinyl transferase; Provisional	NA|344aa|up_6|CP031881.1_1579145_1580177_-	PRK09261, PRK09261, phospho-2-dehydro-3-deoxyheptonate aldolase; Validated	NA|344aa|up_5|CP031881.1_1580274_1581306_-	COG0722, AroG, 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]	NA|856aa|up_4|CP031881.1_1581311_1583879_-	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|86aa|up_3|CP031881.1_1584061_1584319_-	NA	NA|316aa|up_2|CP031881.1_1584405_1585353_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|298aa|up_1|CP031881.1_1585418_1586312_-	pfam00480, ROK, ROK family	NA|634aa|up_0|CP031881.1_1586495_1588397_-	TIGR01996, Includes:_Phosphotransferase_enzyme_IIB_component, PTS system, sucrose-specific IIBC component	NA|481aa|down_0|CP031881.1_1588645_1590088_+	TIGR01322, Sucrose-6-phosphate_hydrolase, sucrose-6-phosphate hydrolase	NA|322aa|down_1|CP031881.1_1590096_1591062_+	cd06291, PBP1_Qymf-like, ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs	NA|145aa|down_2|CP031881.1_1591151_1591586_-	PRK00202, nusB, transcription antitermination factor NusB	NA|130aa|down_3|CP031881.1_1591578_1591968_-	pfam03780, Asp23, Asp23 family, cell envelope-related function	NA|187aa|down_4|CP031881.1_1592038_1592599_-	PRK00529, PRK00529, elongation factor P; Validated	NA|152aa|down_5|CP031881.1_1592711_1593167_-	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2	NA|354aa|down_6|CP031881.1_1593185_1594247_-	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism]	NA|143aa|down_7|CP031881.1_1594436_1594865_-	NA	NA|64aa|down_8|CP031881.1_1596047_1596239_-	NA	NA|91aa|down_9|CP031881.1_1596400_1596673_-	pfam13061, DUF3923, Protein of unknown function (DUF3923)
GCA_003443395.1_ASM344339v1	CP031881	Streptococcus thermophilus strain ST106 chromosome, complete genome	4	1738410-1738491	4	CRISPRCasFinder	no	csa3	DEDDh,cas9,cas1,cas2,csn2,DinG,cas6,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas3,csa3	Type I-A	AATAACATTCAAGTGTTTGTTTGAATA	27	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas9,cas1,cas2,csn2,DinG,cas6,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas3,csa3	NA|113aa|up_6|CP031881.1_1731191_1731530_-,NA|62aa|down_0|CP031881.1_1739231_1739417_+,NA|131aa|down_9|CP031881.1_1749730_1750123_-	NA|53aa|up_9|CP031881.1_1729852_1730011_+	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|179aa|up_8|CP031881.1_1730026_1730563_+	TIGR02404, Trehalose_operon_transcriptional_repressor, trehalose operon repressor, B	NA|187aa|up_7|CP031881.1_1730618_1731179_-	PRK13690, PRK13690, hypothetical protein; Provisional	NA|113aa|up_6|CP031881.1_1731191_1731530_-	NA	NA|42aa|up_5|CP031881.1_1731953_1732079_+	pfam13936, HTH_38, Helix-turn-helix domain	NA|152aa|up_4|CP031881.1_1732270_1732726_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|40aa|up_3|CP031881.1_1732825_1732945_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|399aa|up_2|CP031881.1_1733392_1734589_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|68aa|up_1|CP031881.1_1734668_1734872_-	pfam09035, Tn916-Xis, Excisionase from transposon Tn916	NA|77aa|up_0|CP031881.1_1735261_1735492_-	pfam12645, HTH_16, Helix-turn-helix domain	NA|62aa|down_0|CP031881.1_1739231_1739417_+	NA	NA|117aa|down_1|CP031881.1_1739397_1739748_+	pfam05717, TnpB_IS66, IS66 Orf2 like protein	NA|69aa|down_2|CP031881.1_1739798_1740005_+	pfam13007, LZ_Tnp_IS66, Transposase C of IS166 homeodomain	NA|451aa|down_3|CP031881.1_1739958_1741311_+	pfam03050, DDE_Tnp_IS66, Transposase IS66 family	csa3|112aa|down_4|CP031881.1_1741527_1741863_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|382aa|down_5|CP031881.1_1742034_1743179_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|419aa|down_6|CP031881.1_1743241_1744498_-	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|207aa|down_7|CP031881.1_1746046_1746667_-	pfam08937, DUF1863, MTH538 TIR-like domain (DUF1863)	NA|197aa|down_8|CP031881.1_1748183_1748774_-	cd01192, INT_C_like_3, Uncharacterized site-specific tyrosine recombinase, C-terminal catalytic domain	NA|131aa|down_9|CP031881.1_1749730_1750123_-	NA
