The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	0	16693	5029620	protease	Acanthocystis_turfacea_Chlorella_virus(100.0%)	16	NA	NA
AXS38733.1|1996_2485_+	outer membrane lipoprotein carrier protein LolA	NA	NA	NA	NA	NA
AXS38734.1|2676_3540_-	acyl-CoA thioesterase II	NA	NA	NA	NA	NA
AXS38735.1|3674_4901_+	ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
AXS38736.1|4897_5737_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
AXS38737.1|5796_5988_+	twin transmembrane helix small protein	NA	NA	NA	NA	NA
AXS38738.1|6013_6586_+	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA	NA
AXS38739.1|6968_7670_+|protease	rhomboid family intramembrane serine protease	protease	NA	NA	NA	NA
AXS38740.1|7892_8642_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
AXS38741.1|8664_9609_+	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA	NA
AXS38742.1|9739_10621_+	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA	NA
AXS38743.1|12308_12503_+	hypothetical protein	NA	NA	NA	NA	NA
AXS38744.1|12703_12898_+	hypothetical protein	NA	NA	NA	NA	NA
AXS38745.1|12911_13565_-	TlpA family protein disulfide reductase	NA	NA	NA	NA	NA
AXS38746.1|13594_14992_+	argininosuccinate lyase	NA	NA	NA	NA	NA
AXS42322.1|15138_15327_+	hypothetical protein	NA	NA	NA	NA	NA
AXS38747.1|15418_16693_+	diaminopimelate decarboxylase	NA	M1HC27	Acanthocystis_turfacea_Chlorella_virus	24.9	1.7e-15
>prophage 2
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	21919	22579	5029620		Planktothrix_phage(100.0%)	1	NA	NA
AXS38752.1|21919_22579_+	cell division ATP-binding protein FtsE	NA	G9BWD6	Planktothrix_phage	36.0	4.2e-29
>prophage 3
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	30920	32441	5029620		Stx2-converting_phage(100.0%)	1	NA	NA
AXS38760.1|30920_32441_-	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	33.1	3.1e-27
>prophage 4
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	45800	47747	5029620		Staphylococcus_phage(100.0%)	1	NA	NA
AXS38772.1|45800_47747_+	acetate--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	39.3	4.8e-89
>prophage 5
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	51288	51846	5029620		Virus_Rctr197k(100.0%)	1	NA	NA
AXS38776.1|51288_51846_-	HNH endonuclease	NA	A0A1P8DIY8	Virus_Rctr197k	37.8	6.4e-23
>prophage 6
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	61119	65830	5029620		Hokovirus(50.0%)	3	NA	NA
AXS38784.1|61119_63660_+	sensor histidine kinase	NA	A0A1V0SGX0	Hokovirus	25.9	1.6e-39
AXS38785.1|63684_64626_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AXS38786.1|65362_65830_+	RidA family protein	NA	M1IDR7	Acanthocystis_turfacea_Chlorella_virus	37.7	5.4e-23
>prophage 7
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	79756	84832	5029620	tRNA	Streptomyces_phage(50.0%)	3	NA	NA
AXS38798.1|79756_80692_-	thioredoxin	NA	A0A1J0GW78	Streptomyces_phage	38.7	3.2e-14
AXS38799.1|80771_81290_-|tRNA	prolyl-tRNA synthetase associated domain-containing protein	tRNA	NA	NA	NA	NA
AXS38800.1|81763_84832_-	multidrug efflux protein	NA	S5VTK5	Leptospira_phage	20.8	6.6e-53
>prophage 8
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	87889	90499	5029620	tRNA	Staphylococcus_phage(100.0%)	1	NA	NA
AXS38802.1|87889_90499_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	38.9	8.4e-166
>prophage 9
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	94268	96144	5029620		Bifidobacterium_phage(50.0%)	2	NA	NA
AXS42332.1|94268_95195_-	ParB/RepB/Spo0J family partition protein	NA	I3NLC2	Bifidobacterium_phage	36.4	4.2e-19
AXS38806.1|95316_96144_-	ParA family protein	NA	H7BUL8	unidentified_phage	28.2	2.8e-22
>prophage 10
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	109855	111921	5029620		Bradyrhizobium_phage(50.0%)	2	NA	NA
AXS38818.1|109855_110560_+	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	53.0	3.6e-63
AXS38819.1|110934_111921_-	D-glycerate dehydrogenase	NA	A0A1B1IVB5	uncultured_Mediterranean_phage	28.9	1.4e-20
>prophage 11
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	120330	121242	5029620		Streptococcus_phage(100.0%)	1	NA	NA
AXS38825.1|120330_121242_+	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	47.1	3.1e-14
>prophage 12
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	132686	139285	5029620		Erysipelothrix_phage(33.33%)	5	NA	NA
AXS38836.1|132686_134510_-	translational GTPase TypA	NA	A0A2K5B2A5	Erysipelothrix_phage	45.9	1.3e-24
AXS38837.1|134682_135174_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AXS38838.1|135170_136397_+	Bcr/CflA family efflux MFS transporter	NA	S4TR35	Salmonella_phage	27.5	2.3e-25
AXS38839.1|136577_138161_-	alkaline phosphatase	NA	NA	NA	NA	NA
AXS42334.1|138508_139285_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.2	2.8e-24
>prophage 13
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	143434	143881	5029620		Pandoravirus(100.0%)	1	NA	NA
AXS38843.1|143434_143881_-	cupin domain-containing protein	NA	A0A291AU44	Pandoravirus	45.7	5.7e-30
>prophage 14
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	148828	149947	5029620		Pacmanvirus(100.0%)	1	NA	NA
AXS38849.1|148828_149947_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.3	1.5e-18
>prophage 15
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	152966	155015	5029620		Bordetella_phage(100.0%)	1	NA	NA
AXS38852.1|152966_155015_+	bifunctional diguanylate cyclase/phosphodiesterase	NA	A0A2D0W963	Bordetella_phage	39.0	3.3e-08
>prophage 16
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	167856	169173	5029620		Hokovirus(100.0%)	1	NA	NA
AXS38864.1|167856_169173_+	response regulator	NA	A0A1V0SGX0	Hokovirus	28.5	1.2e-27
>prophage 17
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	174646	179429	5029620		Klosneuvirus(33.33%)	7	NA	NA
AXS38871.1|174646_175192_+	DUF924 domain-containing protein	NA	A0A1V0SIY0	Klosneuvirus	29.8	2.7e-13
AXS38872.1|175528_175867_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
AXS38873.1|175889_177236_+	ammonium transporter	NA	H8ZJB2	Ostreococcus_tauri_virus	35.7	3.1e-47
AXS38874.1|177375_177582_+	hypothetical protein	NA	NA	NA	NA	NA
AXS38875.1|177610_178159_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AXS38876.1|178151_178364_+	hypothetical protein	NA	NA	NA	NA	NA
AXS38877.1|178391_179429_-	Appr-1-p processing protein	NA	B0FIJ9	Escherichia_phage	36.9	1.1e-18
>prophage 18
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	193283	194597	5029620		Orpheovirus(100.0%)	1	NA	NA
AXS38889.1|193283_194597_-	cytochrome P450	NA	A0A2I2L481	Orpheovirus	26.0	1.5e-33
>prophage 19
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	204482	205517	5029620		Tupanvirus(100.0%)	1	NA	NA
AXS38899.1|204482_205517_-	histone deacetylase family protein	NA	A0A2K9L4C2	Tupanvirus	36.4	1.4e-39
>prophage 20
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	219357	224713	5029620		Indivirus(50.0%)	3	NA	NA
AXS38914.1|219357_222105_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	25.2	1.9e-22
AXS38915.1|222123_222936_-	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
AXS38916.1|223483_224713_+	ammonium transporter	NA	H8ZJB2	Ostreococcus_tauri_virus	33.4	1.5e-35
>prophage 21
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	228113	228767	5029620		Planktothrix_phage(100.0%)	1	NA	NA
AXS38921.1|228113_228767_-	heme ABC exporter ATP-binding protein CcmA	NA	G9BWD6	Planktothrix_phage	31.5	1.7e-14
>prophage 22
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	232972	239818	5029620	transposase	Mannheimia_phage(25.0%)	4	NA	NA
AXS38923.1|232972_233419_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0M3LQH7	Mannheimia_phage	34.3	2.2e-10
AXS38924.1|233901_234873_+|transposase	IS110 family transposase	transposase	Q75QL1	Wolbachia_phage	36.7	1.6e-24
AXS38925.1|235758_238680_-	DNA polymerase I	NA	A0A142F1Q9	Bacillus_phage	32.3	1.3e-69
AXS42348.1|238789_239818_-	acyltransferase	NA	A0A142KBN9	Gordonia_phage	34.8	1.8e-10
>prophage 23
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	249964	256033	5029620		Streptococcus_phage(50.0%)	6	NA	NA
AXS38933.1|249964_250927_-	cysteine synthase A	NA	A0A1X9I5F1	Streptococcus_phage	55.0	2.1e-82
AXS38934.1|251130_251799_-	HAD family hydrolase	NA	NA	NA	NA	NA
AXS38935.1|251840_252296_-	dUTP diphosphatase	NA	K4JSC8	Caulobacter_phage	59.5	1.6e-40
AXS38936.1|252317_253526_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	35.1	1.6e-42
AXS38937.1|253574_254834_-	penicillin-binding protein activator	NA	NA	NA	NA	NA
AXS38938.1|255040_256033_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	39.8	1.9e-46
>prophage 24
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	263574	265383	5029620		Hokovirus(100.0%)	1	NA	NA
AXS38945.1|263574_265383_+	response regulator	NA	A0A1V0SGX0	Hokovirus	28.0	1.3e-40
>prophage 25
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	283764	287877	5029620		Trichoplusia_ni_ascovirus(50.0%)	4	NA	NA
AXS38960.1|283764_284535_-	SDR family oxidoreductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	31.6	7.3e-17
AXS38961.1|284670_285171_-	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
AXS42353.1|285217_286411_-	divergent polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
AXS38962.1|286548_287877_-	S41 family peptidase	NA	A0A0R6PIZ1	Moraxella_phage	28.6	1.6e-32
>prophage 26
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	291481	293962	5029620		Streptococcus_phage(100.0%)	2	NA	NA
AXS38965.1|291481_292783_-	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	47.4	8.4e-90
AXS38966.1|292843_293962_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	41.3	2.3e-56
>prophage 27
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	298241	299012	5029620		Erysipelothrix_phage(100.0%)	1	NA	NA
AXS38971.1|298241_299012_-	heme ABC transporter ATP-binding protein	NA	A0A2I4R674	Erysipelothrix_phage	30.7	6.8e-07
>prophage 28
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	312520	313639	5029620		Rhizobium_phage(100.0%)	1	NA	NA
AXS38981.1|312520_313639_-	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	48.0	2.3e-80
>prophage 29
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	318375	321839	5029620		Bacillus_virus(50.0%)	3	NA	NA
AXS38986.1|318375_319257_-	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA	G3MA33	Bacillus_virus	29.2	7.1e-24
AXS38987.1|319365_320157_+	bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA	NA	NA	NA	NA
AXS38988.1|320159_321839_+	ubiquinone biosynthesis protein UbiB	NA	A0A0R6PHP6	Moraxella_phage	22.3	3.4e-19
>prophage 30
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	325345	326107	5029620	transposase	Paenibacillus_phage(100.0%)	1	NA	NA
AXS38989.1|325345_326107_+|transposase	IS5 family transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	44.3	8.3e-21
>prophage 31
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	331472	332777	5029620	protease	Erwinia_phage(100.0%)	1	NA	NA
AXS38996.1|331472_332777_+|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A173GFL6	Erwinia_phage	28.1	8.2e-37
>prophage 32
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	338985	339918	5029620		Erwinia_phage(100.0%)	1	NA	NA
AXS42359.1|338985_339918_+	PhoH family protein	NA	A0A223LII3	Erwinia_phage	48.8	2.2e-47
>prophage 33
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	343783	345609	5029620		Sinorhizobium_phage(50.0%)	2	NA	NA
AXS39003.1|343783_344191_+	XRE family transcriptional regulator	NA	Q8W6G2	Sinorhizobium_phage	54.6	1.0e-30
AXS42361.1|344436_345609_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	49.9	8.3e-97
>prophage 34
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	349789	352447	5029620		Bodo_saltans_virus(100.0%)	1	NA	NA
AXS39007.1|349789_352447_+	translation initiation factor IF-2	NA	A0A2H4UTS4	Bodo_saltans_virus	23.5	1.2e-18
>prophage 35
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	369168	373870	5029620		Planktothrix_phage(50.0%)	4	NA	NA
AXS42364.1|369168_370797_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.2	4.6e-21
AXS39020.1|370826_371435_-	recombination protein RecR	NA	NA	NA	NA	NA
AXS39021.1|371460_371781_-	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
AXS39022.1|371926_373870_-	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	35.4	1.8e-43
>prophage 36
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	391289	392201	5029620		Tupanvirus(100.0%)	1	NA	NA
AXS39038.1|391289_392201_+	succinate--CoA ligase subunit alpha	NA	A0A2K9L5E9	Tupanvirus	33.2	3.0e-17
>prophage 37
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	397227	402998	5029620		Erysipelothrix_phage(33.33%)	6	NA	NA
AXS39042.1|397227_398634_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	29.3	1.9e-47
AXS39043.1|398717_398936_-	hypothetical protein	NA	NA	NA	NA	NA
AXS39044.1|399126_399591_-	hypothetical protein	NA	NA	NA	NA	NA
AXS39045.1|399803_400748_-	tyrosine recombinase XerC	NA	A0A0K0MWE8	Gordonia_phage	38.7	1.6e-13
AXS39046.1|400801_402124_-	DUF1835 domain-containing protein	NA	NA	NA	NA	NA
AXS39047.1|402344_402998_-	fructose-6-phosphate aldolase	NA	A0A0C5AMY8	Cyanophage	49.1	2.0e-52
>prophage 38
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	430220	432946	5029620		Salinibacter_virus(33.33%)	4	NA	NA
AXS39067.1|430220_431249_+	signal peptide peptidase SppA	NA	A0A2I6UH21	Salinibacter_virus	37.9	1.1e-23
AXS39068.1|431214_431496_+	integration host factor subunit beta	NA	A7KV42	Bacillus_phage	39.1	5.7e-12
AXS42370.1|431619_431970_+	LapA family protein	NA	NA	NA	NA	NA
AXS39069.1|431983_432946_+	ornithine cyclodeaminase family protein	NA	A0A1V0SL93	Klosneuvirus	23.7	4.5e-16
>prophage 39
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	437004	437325	5029620		Streptomyces_phage(100.0%)	1	NA	NA
AXS39073.1|437004_437325_-	thioredoxin TrxA	NA	A0A1J0GW78	Streptomyces_phage	50.5	7.7e-21
>prophage 40
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	446448	450588	5029620		Hokovirus(50.0%)	2	NA	NA
AXS42371.1|446448_448944_-	PAS domain-containing protein	NA	A0A1V0SGX0	Hokovirus	30.9	4.5e-23
AXS39077.1|449190_450588_-	adenosylhomocysteinase	NA	S4W1G4	Pandoravirus	31.1	6.7e-45
>prophage 41
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	455632	456331	5029620		Bacillus_thuringiensis_phage(100.0%)	1	NA	NA
AXS39081.1|455632_456331_-	DNA-binding response regulator	NA	Q56AR1	Bacillus_thuringiensis_phage	32.8	7.3e-08
>prophage 42
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	460155	461769	5029620		Staphylococcus_phage(100.0%)	1	NA	NA
AXS39086.1|460155_461769_+	phosphoenolpyruvate carboxykinase	NA	A0A2H4PQN1	Staphylococcus_phage	48.5	6.0e-138
>prophage 43
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	471385	472765	5029620		Mycoplasma_phage(100.0%)	1	NA	NA
AXS42374.1|471385_472765_+	leucyl aminopeptidase family protein	NA	Q6GYZ8	Mycoplasma_phage	32.4	5.5e-31
>prophage 44
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	477028	477568	5029620		Synechococcus_phage(100.0%)	1	NA	NA
AXS39096.1|477028_477568_-	peptide deformylase	NA	E3SLL2	Synechococcus_phage	43.4	7.9e-26
>prophage 45
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	484995	487053	5029620		Bacillus_virus(100.0%)	1	NA	NA
AXS39103.1|484995_487053_+	EAL domain-containing protein	NA	G3MA91	Bacillus_virus	30.8	2.2e-15
>prophage 46
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	490119	495348	5029620		uncultured_Caudovirales_phage(66.67%)	6	NA	NA
AXS39108.1|490119_490974_-	universal stress protein	NA	A0A2H4J154	uncultured_Caudovirales_phage	42.5	6.3e-54
AXS39109.1|490984_492475_-	SulP family inorganic anion transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	67.7	9.0e-181
AXS39110.1|492676_493660_-	rubrerythrin family protein	NA	NA	NA	NA	NA
AXS42377.1|493919_494243_+	hypothetical protein	NA	NA	NA	NA	NA
AXS42378.1|494407_494728_+	hypothetical protein	NA	NA	NA	NA	NA
AXS39111.1|494883_495348_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	51.9	5.7e-25
>prophage 47
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	505556	506519	5029620	tRNA	Prochlorococcus_phage(100.0%)	1	NA	NA
AXS39122.1|505556_506519_-|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	32.6	5.4e-09
>prophage 48
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	530462	531828	5029620		Cyanophage(50.0%)	3	NA	NA
AXS39141.1|530462_530897_+	heat-shock protein Hsp20	NA	A0A0C5AE28	Cyanophage	38.6	4.5e-16
AXS42384.1|530971_531226_+	DUF1150 domain-containing protein	NA	NA	NA	NA	NA
AXS39142.1|531372_531828_+	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	A0A0G2Y1B6	Acanthamoeba_polyphaga_mimivirus	35.4	9.9e-14
>prophage 49
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	536004	539232	5029620		Staphylococcus_phage(50.0%)	4	NA	NA
AXS42385.1|536004_536736_-	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	32.2	3.1e-25
AXS42386.1|537028_537583_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
AXS39147.1|537615_538419_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
AXS39148.1|538611_539232_-	ribonuclease D	NA	K7XYU9	uncultured_Mediterranean_phage	33.8	1.0e-13
>prophage 50
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	549343	552428	5029620		Planktothrix_phage(100.0%)	3	NA	NA
AXS42389.1|549343_550204_-	phosphonate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.1	2.1e-25
AXS39157.1|550935_551649_-	phosphonate C-P lyase system protein PhnL	NA	G9BWD6	Planktothrix_phage	31.2	5.4e-14
AXS42390.1|551651_552428_-	phosphonate C-P lyase system protein PhnK	NA	G9BWD6	Planktothrix_phage	29.3	1.4e-15
>prophage 51
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	575531	577325	5029620		Pandoravirus(100.0%)	1	NA	NA
AXS42396.1|575531_577325_+	aminodeoxychorismate synthase component I	NA	A0A0B5J984	Pandoravirus	34.1	5.4e-55
>prophage 52
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	581657	587348	5029620	tRNA	Tupanvirus(33.33%)	7	NA	NA
AXS39180.1|581657_582764_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2K9L3A8	Tupanvirus	32.5	5.4e-29
AXS39181.1|582891_583953_-	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	A0A076FFT9	Aureococcus_anophage	33.3	2.8e-11
AXS39182.1|584165_584792_+	glutathione S-transferase family protein	NA	NA	NA	NA	NA
AXS39183.1|584802_585786_-	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA	NA
AXS39184.1|585896_586253_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
AXS39185.1|586283_586481_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
AXS39186.1|586721_587348_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	32.3	3.0e-13
>prophage 53
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	591068	592874	5029620		Streptococcus_phage(100.0%)	1	NA	NA
AXS39188.1|591068_592874_+	elongation factor 4	NA	E4ZFJ7	Streptococcus_phage	24.5	2.7e-22
>prophage 54
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	603826	605551	5029620		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
AXS39199.1|603826_605551_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	34.5	1.4e-12
>prophage 55
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	614676	615384	5029620		Bacillus_virus(100.0%)	1	NA	NA
AXS39205.1|614676_615384_-	ATP-binding cassette domain-containing protein	NA	G3M9Y6	Bacillus_virus	31.3	7.2e-19
>prophage 56
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	632302	639295	5029620		Staphylococcus_phage(33.33%)	7	NA	NA
AXS39210.1|632302_633829_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.0	3.4e-18
AXS39211.1|633825_634935_+	ABC transporter permease	NA	NA	NA	NA	NA
AXS39212.1|634945_635914_+	ABC transporter permease	NA	NA	NA	NA	NA
AXS39213.1|635910_636312_+	cytidine deaminase	NA	NA	NA	NA	NA
AXS39214.1|636308_637127_+	purine-nucleoside phosphorylase	NA	Q5YBA4	Grouper_iridovirus	37.2	1.4e-37
AXS39215.1|637208_638030_+	deoxyribose-phosphate aldolase	NA	NA	NA	NA	NA
AXS39216.1|637981_639295_+	thymidine phosphorylase	NA	A0A0H3UZD4	Geobacillus_virus	39.9	1.1e-73
>prophage 58
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	727457	732403	5029620		Microcystis_virus(50.0%)	2	NA	NA
AXS39292.1|727457_729614_+	hypothetical protein	NA	A0A7H6	Microcystis_virus	42.2	5.9e-40
AXS39293.1|730705_732403_+	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	25.1	7.0e-20
>prophage 59
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	740268	742086	5029620		Tupanvirus(100.0%)	1	NA	NA
AXS39298.1|740268_742086_-	ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	25.5	5.9e-33
>prophage 60
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	763865	765026	5029620		Bacillus_virus(100.0%)	1	NA	NA
AXS42412.1|763865_765026_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.8	3.4e-26
>prophage 61
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	770429	772964	5029620		Bacillus_virus(100.0%)	1	NA	NA
AXS39318.1|770429_772964_+	ATP-binding cassette domain-containing protein	NA	G3M9Y6	Bacillus_virus	29.6	1.1e-13
>prophage 62
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	782386	783109	5029620		Freshwater_phage(100.0%)	1	NA	NA
AXS42415.1|782386_783109_-	hypothetical protein	NA	A0A1B0XU52	Freshwater_phage	31.2	2.9e-15
>prophage 63
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	790794	791373	5029620	tail	Cronobacter_phage(100.0%)	1	NA	NA
AXS39328.1|790794_791373_-|tail	phage tail protein	tail	A0A1D3RKS5	Cronobacter_phage	37.6	4.6e-08
>prophage 64
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	799122	800652	5029620		Staphylococcus_phage(100.0%)	1	NA	NA
AXS39335.1|799122_800652_-	malonyl-CoA synthase	NA	A0A2H4PQM9	Staphylococcus_phage	29.5	9.7e-37
>prophage 65
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	818865	820347	5029620		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
AXS39350.1|818865_820347_-	PAS domain S-box protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	53.8	1.4e-16
>prophage 66
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	824307	825405	5029620		Bordetella_phage(100.0%)	1	NA	NA
AXS42422.1|824307_825405_+	ATP-binding protein	NA	A0A291LA07	Bordetella_phage	58.2	5.9e-113
>prophage 67
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	849952	853666	5029620		Ectocarpus_siliculosus_virus(100.0%)	1	NA	NA
AXS42425.1|849952_853666_-	PAS domain S-box protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	35.5	3.8e-26
>prophage 68
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	866993	867824	5029620		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
AXS39374.1|866993_867824_-	universal stress protein	NA	A0A2H4J154	uncultured_Caudovirales_phage	28.6	1.8e-05
>prophage 69
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	880981	883777	5029620		Bacillus_virus(100.0%)	1	NA	NA
AXS39381.1|880981_883777_-	EAL domain-containing protein	NA	G3MA91	Bacillus_virus	33.3	2.0e-19
>prophage 70
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	888658	890770	5029620		Bacillus_virus(100.0%)	1	NA	NA
AXS39388.1|888658_890770_-	bifunctional diguanylate cyclase/phosphodiesterase	NA	G3MA91	Bacillus_virus	27.7	3.1e-17
>prophage 71
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	898959	899925	5029620		Acanthocystis_turfacea_Chlorella_virus(100.0%)	1	NA	NA
AXS39395.1|898959_899925_-	D-glycerate dehydrogenase	NA	M1HUT5	Acanthocystis_turfacea_Chlorella_virus	29.9	4.9e-18
>prophage 72
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	932347	933991	5029620	tRNA	Tupanvirus(100.0%)	1	NA	NA
AXS39415.1|932347_933991_-|tRNA	histidine--tRNA ligase	tRNA	A0A2K9L6G5	Tupanvirus	25.9	5.0e-31
>prophage 73
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	946827	951389	5029620		uncultured_virus(66.67%)	5	NA	NA
AXS39428.1|946827_947568_-	sugar ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.6	1.1e-17
AXS42444.1|947931_948924_+	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXS39429.1|949059_949272_-	hypothetical protein	NA	NA	NA	NA	NA
AXS39430.1|949406_951044_-	chaperonin GroEL	NA	A0A240F779	uncultured_virus	60.2	7.9e-170
AXS39431.1|951101_951389_-	co-chaperone GroES	NA	A0A221S4G8	uncultured_virus	60.9	2.1e-22
>prophage 74
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	958221	968205	5029620	tRNA	Planktothrix_phage(25.0%)	7	NA	NA
AXS39437.1|958221_958959_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.3	3.5e-32
AXS39438.1|959174_960581_+	EAL domain-containing protein	NA	NA	NA	NA	NA
AXS39439.1|960838_962212_-	insulinase family protein	NA	G3MBJ8	Bacillus_virus	22.9	8.2e-19
AXS39440.1|962211_963501_-	insulinase family protein	NA	L7RBE7	Acanthamoeba_polyphaga_moumouvirus	24.2	5.1e-23
AXS39441.1|963863_964499_-	hypothetical protein	NA	NA	NA	NA	NA
AXS39442.1|964724_965225_-	signal peptidase II	NA	NA	NA	NA	NA
AXS39443.1|965247_968205_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A2H4UVG0	Bodo_saltans_virus	25.2	3.3e-57
>prophage 75
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	972802	974791	5029620		Wolbachia_phage(100.0%)	1	NA	NA
AXS39448.1|972802_974791_+	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	39.1	6.5e-110
>prophage 76
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	983127	984054	5029620		Staphylococcus_phage(100.0%)	1	NA	NA
AXS39455.1|983127_984054_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	31.2	2.2e-20
>prophage 77
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	988229	988700	5029620		Pandoravirus(100.0%)	1	NA	NA
AXS39461.1|988229_988700_+	nucleoside deaminase	NA	S4VYZ2	Pandoravirus	47.9	9.0e-10
>prophage 78
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	1000363	1002214	5029620		Bacillus_phage(100.0%)	1	NA	NA
AXS39473.1|1000363_1002214_+	ATP-binding cassette domain-containing protein	NA	W8CYL7	Bacillus_phage	28.8	6.0e-49
>prophage 79
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	1010479	1011778	5029620		Tupanvirus(100.0%)	1	NA	NA
AXS39480.1|1010479_1011778_-	hypothetical protein	NA	A0A2K9L8I2	Tupanvirus	26.6	4.5e-11
>prophage 80
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	1020324	1021920	5029620		Flavobacterium_phage(100.0%)	1	NA	NA
AXS39491.1|1020324_1021920_+	cytochrome c oxidase subunit I	NA	R9VX24	Flavobacterium_phage	38.8	1.5e-08
>prophage 81
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	1026046	1026532	5029620		Pelagibacter_phage(100.0%)	1	NA	NA
AXS39496.1|1026046_1026532_-	peroxiredoxin	NA	M1I839	Pelagibacter_phage	47.5	1.9e-23
>prophage 82
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	1032106	1036475	5029620		Bacillus_phage(50.0%)	3	NA	NA
AXS39501.1|1032106_1035040_+	EAL domain-containing protein	NA	A0A127AWB9	Bacillus_phage	29.3	1.0e-10
AXS39502.1|1035060_1036011_-	YegS/Rv2252/BmrU family lipid kinase	NA	NA	NA	NA	NA
AXS39503.1|1036010_1036475_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	55.9	7.4e-41
>prophage 83
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	1041602	1044535	5029620		Prochlorococcus_phage(100.0%)	2	NA	NA
AXS39507.1|1041602_1042952_+	aminomethyl-transferring glycine dehydrogenase subunit GcvPA	NA	E3SN07	Prochlorococcus_phage	34.2	1.8e-47
AXS39508.1|1042948_1044535_+	glycine dehydrogenase subunit 2	NA	E3ST28	Prochlorococcus_phage	37.7	4.0e-70
>prophage 84
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	1051324	1052473	5029620		Enterococcus_phage(100.0%)	1	NA	NA
AXS39512.1|1051324_1052473_-	site-specific DNA-methyltransferase	NA	A0A249XUJ2	Enterococcus_phage	31.0	1.1e-27
>prophage 85
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	1055559	1057644	5029620		Bacillus_phage(100.0%)	1	NA	NA
AXS39514.1|1055559_1057644_-	response regulator	NA	W8CYM9	Bacillus_phage	26.6	1.2e-05
>prophage 86
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	1061220	1061769	5029620		Catovirus(100.0%)	1	NA	NA
AXS42448.1|1061220_1061769_-	2OG-Fe(II) oxygenase	NA	A0A1V0S983	Catovirus	37.9	7.0e-22
>prophage 87
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	1083958	1084240	5029620		Escherichia_phage(100.0%)	1	NA	NA
AXS39536.1|1083958_1084240_+	type II toxin-antitoxin system ParD family antitoxin	NA	A0A0N7C055	Escherichia_phage	44.7	3.1e-10
>prophage 88
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	1096838	1098038	5029620		uncultured_virus(100.0%)	1	NA	NA
AXS39545.1|1096838_1098038_+	cell wall hydrolase	NA	A0A218MLD1	uncultured_virus	42.0	3.1e-22
>prophage 89
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	1114007	1114649	5029620		Silicibacter_phage(100.0%)	1	NA	NA
AXS39558.1|1114007_1114649_-	HD family hydrolase	NA	G8DCW4	Silicibacter_phage	41.3	2.2e-19
>prophage 90
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	1118439	1120370	5029620		Klosneuvirus(50.0%)	3	NA	NA
AXS39562.1|1118439_1118895_-	NUDIX domain-containing protein	NA	A0A1V0SIB1	Klosneuvirus	36.3	2.9e-05
AXS39563.1|1118949_1119471_-	hypothetical protein	NA	NA	NA	NA	NA
AXS39564.1|1119629_1120370_+	SOS response-associated peptidase	NA	A0A2H4J5W2	uncultured_Caudovirales_phage	30.0	5.7e-19
>prophage 91
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	1126223	1130613	5029620		Staphylococcus_phage(50.0%)	4	NA	NA
AXS39571.1|1126223_1127540_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	36.3	4.2e-57
AXS39572.1|1127538_1127796_+	hypothetical protein	NA	NA	NA	NA	NA
AXS39573.1|1127802_1129203_-	hypothetical protein	NA	NA	NA	NA	NA
AXS39574.1|1129527_1130613_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	43.7	8.6e-72
>prophage 92
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	1142037	1142967	5029620	transposase	Wolbachia_phage(100.0%)	1	NA	NA
AXS39584.1|1142037_1142967_+|transposase	IS110 family transposase	transposase	Q75QL1	Wolbachia_phage	33.9	3.6e-26
>prophage 93
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	1157666	1160138	5029620		Tupanvirus(50.0%)	2	NA	NA
AXS39594.1|1157666_1158593_-	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	33.8	8.4e-44
AXS39595.1|1159136_1160138_-	threonylcarbamoyl-AMP synthase	NA	A0A291ATS8	Pandoravirus	39.3	9.8e-38
>prophage 94
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	1166287	1167238	5029620		Brevibacillus_phage(100.0%)	1	NA	NA
AXS39597.1|1166287_1167238_+	hypothetical protein	NA	A0A0K2CP59	Brevibacillus_phage	24.1	2.3e-12
>prophage 95
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	1177427	1179053	5029620		Staphylococcus_phage(100.0%)	1	NA	NA
AXS39604.1|1177427_1179053_+	long-chain-fatty-acid--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	26.0	1.6e-29
>prophage 96
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	1183071	1183884	5029620		Bacillus_phage(100.0%)	1	NA	NA
AXS39609.1|1183071_1183884_+	metal ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	29.6	5.7e-12
>prophage 97
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	1187462	1191631	5029620		uncultured_Mediterranean_phage(66.67%)	3	NA	NA
AXS39613.1|1187462_1188803_+	two-component sensor histidine kinase	NA	W8CYF6	Bacillus_phage	29.3	7.4e-25
AXS39614.1|1188990_1190010_+	phosphate ABC transporter substrate-binding protein	NA	A0A1B1IWY0	uncultured_Mediterranean_phage	50.8	1.6e-88
AXS42460.1|1190635_1191631_+	phosphonate ABC transporter substrate-binding protein	NA	A0A1B1IWY0	uncultured_Mediterranean_phage	39.9	5.1e-63
>prophage 98
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	1194649	1200193	5029620		Bacillus_virus(25.0%)	6	NA	NA
AXS42461.1|1194649_1195456_+	phosphate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.0	1.1e-15
AXS39617.1|1195495_1196209_+	phosphate transport system regulatory protein PhoU	NA	NA	NA	NA	NA
AXS39618.1|1196345_1197041_+	phosphate regulon transcriptional regulatory protein PhoB	NA	W8CYM9	Bacillus_phage	38.3	3.6e-39
AXS39619.1|1197170_1197686_-	GcrA cell cycle regulator	NA	NA	NA	NA	NA
AXS39620.1|1198053_1199280_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	27.4	6.2e-26
AXS39621.1|1199257_1200193_+	ornithine carbamoyltransferase	NA	Q84489	Paramecium_bursaria_Chlorella_virus	29.7	2.9e-20
>prophage 99
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	1216269	1216818	5029620		Streptococcus_phage(100.0%)	1	NA	NA
AXS39630.1|1216269_1216818_-	phosphoenolpyruvate carboxykinase	NA	A0A1X9I5T8	Streptococcus_phage	41.8	1.2e-18
>prophage 100
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	1229233	1229578	5029620		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
AXS39638.1|1229233_1229578_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	46.9	4.1e-20
>prophage 101
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	1261159	1262179	5029620		Mycobacterium_phage(100.0%)	1	NA	NA
AXS42470.1|1261159_1262179_-	alpha/beta hydrolase	NA	A0A088FQA2	Mycobacterium_phage	31.7	1.5e-09
>prophage 102
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	1268031	1269907	5029620		Klosneuvirus(50.0%)	2	NA	NA
AXS39668.1|1268031_1269183_+	PAS domain S-box protein	NA	A0A1V0SL97	Klosneuvirus	34.9	1.1e-16
AXS39669.1|1269292_1269907_+	response regulator	NA	W8CYM9	Bacillus_phage	32.8	7.6e-09
>prophage 103
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	1280683	1285597	5029620		uncultured_virus(33.33%)	4	NA	NA
AXS39677.1|1280683_1282882_+	cadmium-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	28.7	2.6e-67
AXS39678.1|1282930_1283101_+	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
AXS39679.1|1283414_1284695_-	5-aminolevulinate synthase	NA	V5LQ39	Emiliania_huxleyi_virus	29.2	2.4e-36
AXS39680.1|1285108_1285597_+	response regulator	NA	Q8QKV7	Ectocarpus_siliculosus_virus	28.9	6.7e-08
>prophage 104
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	1290677	1292336	5029620		Ostreococcus_tauri_virus(100.0%)	1	NA	NA
AXS39685.1|1290677_1292336_+	hypothetical protein	NA	A9YVT5	Ostreococcus_tauri_virus	21.6	4.0e-12
>prophage 105
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	1303902	1316698	5029620	terminase,portal	Wolbachia_phage(40.0%)	11	NA	NA
AXS39699.1|1303902_1305711_-	peptidase U35	NA	A0A2I7S8L6	Vibrio_phage	28.5	4.5e-57
AXS39700.1|1305707_1307075_-|portal	phage portal protein	portal	Q75QM9	Wolbachia_phage	38.1	1.2e-78
AXS39701.1|1307112_1307661_-	hypothetical protein	NA	NA	NA	NA	NA
AXS39702.1|1307705_1307987_-	hypothetical protein	NA	NA	NA	NA	NA
AXS39703.1|1307979_1308276_-	hypothetical protein	NA	NA	NA	NA	NA
AXS39704.1|1308390_1308594_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AXS39705.1|1309464_1311333_-|terminase	phage terminase large subunit family protein	terminase	K4I3Y9	Acidithiobacillus_phage	52.9	1.0e-160
AXS39706.1|1311325_1311853_-	hypothetical protein	NA	NA	NA	NA	NA
AXS39707.1|1312167_1313325_-	hypothetical protein	NA	A0A1B2LRQ1	Wolbachia_phage	45.0	3.4e-42
AXS39708.1|1313901_1315020_-	hypothetical protein	NA	NA	NA	NA	NA
AXS39709.1|1315012_1316698_-	carbamoyl transferase	NA	A0A1B1IVF2	uncultured_Mediterranean_phage	31.2	4.3e-46
>prophage 106
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	1323123	1324506	5029620		Micromonas_pusilla_virus(100.0%)	1	NA	NA
AXS39714.1|1323123_1324506_-	mannitol dehydrogenase family protein	NA	G9E6E2	Micromonas_pusilla_virus	28.8	1.8e-34
>prophage 107
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	1334259	1335855	5029620		Planktothrix_phage(100.0%)	1	NA	NA
AXS39721.1|1334259_1335855_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.2	4.0e-17
>prophage 108
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	1353281	1353995	5029620		Bacillus_phage(100.0%)	1	NA	NA
AXS39736.1|1353281_1353995_+	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	32.9	5.7e-24
>prophage 109
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	1359834	1362201	5029620		Tupanvirus(100.0%)	1	NA	NA
AXS39741.1|1359834_1362201_-	response regulator	NA	A0A2K9L5I4	Tupanvirus	25.9	1.1e-10
>prophage 110
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	1379090	1380203	5029620		Synechococcus_phage(100.0%)	1	NA	NA
AXS39755.1|1379090_1380203_+	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	NA	E3SJ82	Synechococcus_phage	28.4	1.5e-34
>prophage 111
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	1386099	1386891	5029620		Staphylococcus_phage(100.0%)	1	NA	NA
AXS39760.1|1386099_1386891_-	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	1.3e-16
>prophage 112
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	1391542	1392028	5029620		uncultured_virus(100.0%)	1	NA	NA
AXS42483.1|1391542_1392028_-	c-type cytochrome, methanol metabolism-related	NA	A0A218MKF6	uncultured_virus	48.1	8.9e-21
>prophage 113
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	1408737	1419208	5029620	integrase	Rhizobium_phage(28.57%)	13	1405833:1405847	1418493:1418507
1405833:1405847	attL	AGGGCGGCGAGGCGA	NA	NA	NA	NA
AXS39777.1|1408737_1409802_-|integrase	site-specific integrase	integrase	A0A240F4W2	Ochrobactrum_phage	40.6	1.9e-68
AXS39778.1|1410033_1410276_-	hypothetical protein	NA	NA	NA	NA	NA
AXS39779.1|1410280_1411210_-	ATP-binding protein	NA	E5ESM9	Bathycoccus_sp._RCC1105_virus	31.5	1.9e-19
AXS39780.1|1411206_1411803_-	DUF2312 domain-containing protein	NA	Q8W6H2	Sinorhizobium_phage	54.5	1.4e-12
AXS39781.1|1412817_1413366_-	helix-turn-helix transcriptional regulator	NA	R9TRS6	Rhizobium_phage	41.1	1.2e-32
AXS42486.1|1413631_1413901_+	hypothetical protein	NA	R9TNB3	Rhizobium_phage	44.6	1.3e-10
AXS39782.1|1413983_1414496_+	hypothetical protein	NA	NA	NA	NA	NA
AXS39783.1|1414492_1415119_+	hypothetical protein	NA	NA	NA	NA	NA
AXS39784.1|1415241_1415595_+	hypothetical protein	NA	NA	NA	NA	NA
AXS39785.1|1415584_1415995_+	hypothetical protein	NA	NA	NA	NA	NA
AXS39786.1|1415988_1416231_+	hypothetical protein	NA	NA	NA	NA	NA
AXS39787.1|1416227_1417478_+	DNA primase	NA	A0A0K1LM84	Rhodobacter_phage	30.7	2.4e-17
AXS39788.1|1417474_1419208_+	hypothetical protein	NA	A0A0A8IN90	Aurantimonas_phage	47.9	5.3e-132
1418493:1418507	attR	AGGGCGGCGAGGCGA	NA	NA	NA	NA
>prophage 114
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	1431207	1437029	5029620	transposase	Leptospira_phage(50.0%)	4	NA	NA
AXS42487.1|1431207_1432293_+|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	39.0	3.9e-48
AXS39796.1|1432538_1433462_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXS39797.1|1433686_1434613_+	hypothetical protein	NA	NA	NA	NA	NA
AXS39798.1|1434551_1437029_+	pyridoxal-phosphate dependent enzyme	NA	A0A1W6JHY1	Lactococcus_phage	27.9	1.2e-15
>prophage 115
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	1451458	1456726	5029620		Rhizobium_phage(50.0%)	4	NA	NA
AXS39803.1|1451458_1452154_-	helix-turn-helix domain-containing protein	NA	R9TRS6	Rhizobium_phage	33.9	2.9e-33
AXS39804.1|1452612_1453584_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXS39805.1|1453580_1454927_-	adenylosuccinate lyase family protein	NA	NA	NA	NA	NA
AXS39806.1|1454887_1456726_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.4	1.1e-21
>prophage 116
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	1465680	1470323	5029620		Bodo_saltans_virus(33.33%)	7	NA	NA
AXS42488.1|1465680_1466352_-	RNA pseudouridine synthase	NA	A0A2H4UV25	Bodo_saltans_virus	27.3	1.9e-05
AXS39815.1|1466488_1467196_+	hypothetical protein	NA	NA	NA	NA	NA
AXS39816.1|1467215_1467620_-	hypothetical protein	NA	NA	NA	NA	NA
AXS39817.1|1468121_1468373_+	30S ribosomal protein S21	NA	M1HLV7	Pelagibacter_phage	54.0	4.9e-07
AXS39818.1|1468620_1469253_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
AXS39819.1|1469249_1469606_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
AXS39820.1|1469609_1470323_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2I2L6M4	Escherichia_phage	45.9	2.5e-51
>prophage 117
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	1478679	1480221	5029620		Staphylococcus_phage(100.0%)	1	NA	NA
AXS39823.1|1478679_1480221_+	sugar ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.8	3.9e-17
>prophage 118
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	1512882	1519032	5029620		Bacillus_phage(75.0%)	5	NA	NA
AXS39850.1|1512882_1514553_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	75.6	5.1e-07
AXS39851.1|1514693_1515092_-	response regulator	NA	W8CYM9	Bacillus_phage	32.8	5.3e-11
AXS39852.1|1515039_1517295_-	PAS domain S-box protein	NA	W8CYF6	Bacillus_phage	32.5	1.3e-29
AXS39853.1|1517601_1518009_-	hypothetical protein	NA	NA	NA	NA	NA
AXS39854.1|1518621_1519032_+	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	42.7	5.6e-16
>prophage 119
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	1543605	1549440	5029620		Enterobacteria_phage(80.0%)	6	NA	NA
AXS39873.1|1543605_1544571_-	SDR family oxidoreductase	NA	A0A2K9KZK0	Tupanvirus	47.2	3.2e-86
AXS39874.1|1544619_1545561_-	hypothetical protein	NA	NA	NA	NA	NA
AXS39875.1|1545865_1546756_+	glucose-1-phosphate thymidylyltransferase	NA	I7I009	Enterobacteria_phage	55.8	5.7e-82
AXS42497.1|1546853_1547405_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	49.3	4.7e-34
AXS39876.1|1547448_1548501_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	51.2	7.2e-92
AXS42498.1|1548522_1549440_+	dTDP-4-dehydrorhamnose reductase	NA	A0A140G5S3	Enterobacteria_phage	37.5	1.7e-33
>prophage 120
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	1562832	1566731	5029620	transposase	Paenibacillus_phage(50.0%)	3	NA	NA
AXS39889.1|1562832_1563594_+|transposase	IS5 family transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	44.3	1.1e-20
AXS39890.1|1564734_1565112_+	hypothetical protein	NA	NA	NA	NA	NA
AXS39891.1|1565171_1566731_-	DUF853 domain-containing protein	NA	A0A248XCZ8	Klebsiella_phage	44.2	2.0e-82
>prophage 121
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	1573848	1575258	5029620		Bartonella_henselae_phage(100.0%)	1	NA	NA
AXS39895.1|1573848_1575258_+	porin family protein	NA	O11861	Bartonella_henselae_phage	25.8	2.8e-06
>prophage 122
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	1581331	1581913	5029620		Orpheovirus(100.0%)	1	NA	NA
AXS39900.1|1581331_1581913_+	TIGR00730 family Rossman fold protein	NA	A0A2I2L3F0	Orpheovirus	22.8	8.8e-07
>prophage 123
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	1590118	1590721	5029620		Bacillus_thuringiensis_phage(100.0%)	1	NA	NA
AXS39910.1|1590118_1590721_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	43.1	1.1e-41
>prophage 124
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	1595037	1599778	5029620		Vibrio_virus(50.0%)	2	NA	NA
AXS39917.1|1595037_1595679_+	ParA family protein	NA	A2I303	Vibrio_virus	34.3	1.5e-20
AXS39918.1|1598065_1599778_+	diguanylate cyclase	NA	G3MA91	Bacillus_virus	32.4	4.3e-17
>prophage 125
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	1610925	1611342	5029620		Erythrobacter_phage(100.0%)	1	NA	NA
AXS39927.1|1610925_1611342_+	MucR family transcriptional regulator	NA	A0A1P8VVG0	Erythrobacter_phage	47.7	5.9e-21
>prophage 126
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	1615029	1616880	5029620		Hokovirus(100.0%)	1	NA	NA
AXS39933.1|1615029_1616880_+	PAS domain-containing sensor histidine kinase	NA	A0A1V0SGX0	Hokovirus	36.1	1.5e-31
>prophage 127
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	1640194	1653269	5029620	protease,tail,tRNA,head,capsid,portal	Paracoccus_phage(25.0%)	17	NA	NA
AXS39954.1|1640194_1641541_+	ATP-binding protein	NA	A0A0K1LMR9	Caulobacter_phage	42.8	3.3e-81
AXS39955.1|1641850_1642072_-	hypothetical protein	NA	NA	NA	NA	NA
AXS39956.1|1642704_1643019_-|tRNA	tyrosyl-tRNA synthetase	tRNA	NA	NA	NA	NA
AXS39957.1|1643287_1644472_+|portal	phage portal protein	portal	W8ECU7	Geobacillus_phage	43.2	3.8e-81
AXS39958.1|1644488_1644674_+	hypothetical protein	NA	NA	NA	NA	NA
AXS39959.1|1645197_1645731_+|head,protease	HK97 family phage prohead protease	head,protease	A0A0U2BX10	Paracoccus_phage	46.6	1.2e-29
AXS39960.1|1645821_1647126_+|capsid	phage major capsid protein	capsid	M1FPN2	Enterobacteria_phage	44.9	2.8e-85
AXS39961.1|1647499_1648054_+	hypothetical protein	NA	NA	NA	NA	NA
AXS39962.1|1648050_1648389_+|head,tail	head-tail adaptor protein	head,tail	A0A1J0GUY4	Halomonas_phage	39.4	1.6e-05
AXS39963.1|1648385_1648796_+	DUF3168 domain-containing protein	NA	NA	NA	NA	NA
AXS39964.1|1648821_1649235_+|tail	phage major tail protein, TP901-1 family	tail	NA	NA	NA	NA
AXS42505.1|1649390_1649738_+	gene transfer agent family protein	NA	NA	NA	NA	NA
AXS39965.1|1649706_1649949_+|tail	phage tail assembly chaperone	tail	NA	NA	NA	NA
AXS39966.1|1650541_1650796_-	DUF465 domain-containing protein	NA	NA	NA	NA	NA
AXS39967.1|1650989_1651631_+	TIGR02217 family protein	NA	A0A0B5A2K3	Paracoccus_phage	49.5	4.2e-50
AXS39968.1|1651915_1652812_+	DUF2163 domain-containing protein	NA	A0A0K0PVK1	Roseobacter_phage	39.5	3.0e-54
AXS39969.1|1652819_1653269_+	peptidase P60	NA	A0A1V0DYB6	Dinoroseobacter_phage	48.6	6.1e-32
>prophage 128
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	1657165	1661575	5029620		Rhodobacter_phage(50.0%)	5	NA	NA
AXS39970.1|1657165_1658608_+	DUF2793 domain-containing protein	NA	A0A0K1LM04	Rhodobacter_phage	37.7	3.6e-33
AXS39971.1|1658654_1659284_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AXS39972.1|1659466_1659652_-	hypothetical protein	NA	NA	NA	NA	NA
AXS39973.1|1659683_1660370_-	hypothetical protein	NA	NA	NA	NA	NA
AXS39974.1|1660555_1661575_+	hypothetical protein	NA	A0A2I7RLY1	Vibrio_phage	39.1	1.0e-13
>prophage 129
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	1672740	1674288	5029620		uncultured_Mediterranean_phage(100.0%)	1	NA	NA
AXS39984.1|1672740_1674288_+	Do family serine endopeptidase	NA	A0A1B1IT49	uncultured_Mediterranean_phage	30.1	1.1e-24
>prophage 130
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	1691795	1694444	5029620		Acinetobacter_phage(100.0%)	1	NA	NA
AXS42508.1|1691795_1694444_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	21.2	4.7e-15
>prophage 131
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	1700203	1704330	5029620		Lake_Baikal_phage(50.0%)	2	NA	NA
AXS39999.1|1700203_1702039_+	adenylate/guanylate cyclase domain-containing protein	NA	A0A2H4N7Z5	Lake_Baikal_phage	30.1	8.4e-19
AXS40000.1|1702326_1704330_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.6	1.7e-09
>prophage 132
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	1714729	1716502	5029620		uncultured_Caudovirales_phage(50.0%)	2	NA	NA
AXS40005.1|1714729_1715890_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	46.6	1.8e-14
AXS40006.1|1715974_1716502_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.9	1.4e-22
>prophage 133
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	1726850	1728197	5029620		uncultured_virus(100.0%)	1	NA	NA
AXS40013.1|1726850_1728197_+	adenylate/guanylate cyclase domain-containing protein	NA	A0A218MLZ2	uncultured_virus	28.6	4.3e-12
>prophage 134
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	1736035	1736737	5029620		Bacillus_phage(100.0%)	1	NA	NA
AXS42513.1|1736035_1736737_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	29.4	2.5e-08
>prophage 135
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	1748358	1749726	5029620		Ochrobactrum_phage(100.0%)	1	NA	NA
AXS40030.1|1748358_1749726_-	chromate efflux transporter	NA	A0A219VHC2	Ochrobactrum_phage	71.8	4.9e-32
>prophage 136
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	1772191	1774391	5029620		Burkholderia_phage(50.0%)	3	NA	NA
AXS40050.1|1772191_1772452_-	3-oxoacyl-ACP synthase	NA	K4NZP3	Burkholderia_phage	41.9	4.3e-06
AXS40051.1|1772417_1772708_-	BrnT family toxin	NA	NA	NA	NA	NA
AXS40052.1|1772813_1774391_-	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	36.0	5.0e-12
>prophage 137
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	1797384	1801729	5029620		Micromonas_pusilla_virus(50.0%)	4	NA	NA
AXS40073.1|1797384_1798866_-	mannitol dehydrogenase family protein	NA	G9E6E2	Micromonas_pusilla_virus	30.3	1.4e-45
AXS40074.1|1798858_1799881_-	zinc-binding alcohol dehydrogenase family protein	NA	NA	NA	NA	NA
AXS40075.1|1799967_1800888_-	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXS40076.1|1800964_1801729_-	sugar ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.8	1.2e-08
>prophage 138
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	1821783	1822470	5029620		Bacillus_phage(100.0%)	1	NA	NA
AXS42519.1|1821783_1822470_+	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	33.3	1.3e-30
>prophage 139
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	1825507	1828246	5029620		Staphylococcus_phage(100.0%)	1	NA	NA
AXS40089.1|1825507_1828246_+	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.5	1.4e-22
>prophage 140
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	1837740	1839728	5029620		Planktothrix_phage(100.0%)	2	NA	NA
AXS40094.1|1837740_1838727_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.1	7.2e-17
AXS40095.1|1838726_1839728_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	33.8	2.7e-19
>prophage 141
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	1852826	1854368	5029620		Ectocarpus_siliculosus_virus(100.0%)	1	NA	NA
AXS40108.1|1852826_1854368_-	sensor histidine kinase	NA	Q8QKV7	Ectocarpus_siliculosus_virus	33.2	2.0e-21
>prophage 142
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	1878246	1881050	5029620		Phage_NCTB(66.67%)	3	NA	NA
AXS40131.1|1878246_1879773_-	anion permease	NA	M4QMY4	Ostreococcus_lucimarinus_virus	32.8	1.5e-42
AXS40132.1|1880042_1880480_-	NUDIX domain-containing protein	NA	A0A1C3NEZ8	Phage_NCTB	32.6	9.9e-11
AXS40133.1|1880636_1881050_-	hypothetical protein	NA	A0A1C3NEZ8	Phage_NCTB	29.8	3.5e-10
>prophage 143
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	1902140	1903904	5029620		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
AXS40150.1|1902140_1903904_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	39.6	2.7e-14
>prophage 144
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	1935396	1944769	5029620	transposase	Acidithiobacillus_phage(83.33%)	10	NA	NA
AXS40174.1|1935396_1935753_-	hypothetical protein	NA	K4HZX2	Acidithiobacillus_phage	38.2	1.6e-11
AXS40175.1|1936612_1937393_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
AXS40176.1|1937914_1938370_-	DUF2924 domain-containing protein	NA	K4I3X1	Acidithiobacillus_phage	46.9	4.4e-22
AXS40177.1|1938366_1938570_-	hypothetical protein	NA	NA	NA	NA	NA
AXS40178.1|1938677_1938890_-	hypothetical protein	NA	NA	NA	NA	NA
AXS42530.1|1939028_1939490_+	hypothetical protein	NA	K4ICN3	Acidithiobacillus_phage	59.1	4.3e-41
AXS40179.1|1939491_1939686_+	hypothetical protein	NA	NA	NA	NA	NA
AXS40180.1|1940477_1941812_+	DNA methylase	NA	A0A2H4JGF1	uncultured_Caudovirales_phage	39.1	9.2e-76
AXS40181.1|1943032_1943308_+	hypothetical protein	NA	K4I1E3	Acidithiobacillus_phage	65.8	4.0e-18
AXS40182.1|1944196_1944769_-	DUF3489 domain-containing protein	NA	K4HZZ2	Acidithiobacillus_phage	37.9	1.1e-14
>prophage 145
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	1948178	1952757	5029620		Emiliania_huxleyi_virus(100.0%)	6	NA	NA
AXS40186.1|1948178_1948811_+	hypothetical protein	NA	G8DH49	Emiliania_huxleyi_virus	53.4	2.2e-51
AXS40187.1|1948926_1949247_+	hypothetical protein	NA	NA	NA	NA	NA
AXS40188.1|1949612_1949816_-	hypothetical protein	NA	NA	NA	NA	NA
AXS40189.1|1950712_1951132_+	acyl-CoA transferase	NA	G8DH50	Emiliania_huxleyi_virus	55.7	1.9e-35
AXS40190.1|1951156_1952095_+	hypothetical protein	NA	G8DH51	Emiliania_huxleyi_virus	56.7	3.9e-97
AXS40191.1|1952526_1952757_+	hypothetical protein	NA	G8DH53	Emiliania_huxleyi_virus	57.1	9.4e-05
>prophage 146
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	1971304	1972018	5029620		Planktothrix_phage(100.0%)	1	NA	NA
AXS42531.1|1971304_1972018_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.8	4.7e-34
>prophage 147
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	1978089	1979655	5029620		Staphylococcus_phage(100.0%)	1	NA	NA
AXS42532.1|1978089_1979655_-	sugar ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.3	8.7e-17
>prophage 148
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	1988169	1988382	5029620		Salmonella_phage(100.0%)	1	NA	NA
AXS40208.1|1988169_1988382_-	DUF1328 domain-containing protein	NA	A0A0N7CBR2	Salmonella_phage	55.4	6.0e-06
>prophage 149
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	1998930	2005745	5029620		Catovirus(33.33%)	3	NA	NA
AXS40219.1|1998930_1999893_-	hypothetical protein	NA	A0A1V0SBJ0	Catovirus	21.4	4.7e-05
AXS40220.1|2001063_2004378_+	PAS domain S-box protein	NA	A0A1V0SGX0	Hokovirus	31.0	7.9e-60
AXS40221.1|2004380_2005745_+	sigma-54-dependent Fis family transcriptional regulator	NA	W8CYM9	Bacillus_phage	25.6	5.1e-05
>prophage 150
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	2018694	2027555	5029620		Pseudomonas_phage(33.33%)	7	NA	NA
AXS40228.1|2018694_2021070_-	transglycosylase	NA	K4NWI2	Pseudomonas_phage	43.2	1.5e-23
AXS40229.1|2021311_2022190_+	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
AXS40230.1|2022220_2022703_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	48.6	4.4e-28
AXS40231.1|2022767_2022992_+	hypothetical protein	NA	NA	NA	NA	NA
AXS40232.1|2023221_2023515_-	GIY-YIG nuclease family protein	NA	NA	NA	NA	NA
AXS40233.1|2023985_2025188_+	hypothetical protein	NA	NA	NA	NA	NA
AXS40234.1|2025305_2027555_-	DNA topoisomerase IV subunit A	NA	G3M9Z5	Bacillus_virus	37.7	7.9e-96
>prophage 151
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	2035045	2035759	5029620		Dishui_lake_phycodnavirus(100.0%)	1	NA	NA
AXS40241.1|2035045_2035759_-	ribonuclease III	NA	A0A2K9R4Y7	Dishui_lake_phycodnavirus	31.8	7.0e-14
>prophage 152
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	2060075	2063690	5029620		Aeromonas_phage(33.33%)	4	NA	NA
AXS40262.1|2060075_2061389_+	serine hydroxymethyltransferase	NA	A0A219Y950	Aeromonas_phage	53.4	2.0e-99
AXS40263.1|2061398_2061908_+	transcriptional repressor NrdR	NA	NA	NA	NA	NA
AXS42539.1|2061994_2063083_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	31.3	1.1e-29
AXS40264.1|2063087_2063690_+	riboflavin synthase	NA	A0A2I2L4R9	Orpheovirus	34.7	4.2e-20
>prophage 153
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	2074470	2074791	5029620		Bacillus_phage(100.0%)	1	NA	NA
AXS40273.1|2074470_2074791_+	integration host factor subunit alpha	NA	A0A1P8CWT5	Bacillus_phage	34.8	5.2e-09
>prophage 154
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	2090888	2091818	5029620	transposase	Wolbachia_phage(100.0%)	1	NA	NA
AXS40283.1|2090888_2091818_+|transposase	IS110 family transposase	transposase	Q75QL1	Wolbachia_phage	33.9	3.6e-26
>prophage 155
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	2128237	2130004	5029620		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
AXS40305.1|2128237_2130004_-	chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.6	4.7e-11
>prophage 156
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	2140953	2142630	5029620		Agrobacterium_phage(100.0%)	1	NA	NA
AXS40315.1|2140953_2142630_+	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	40.6	2.2e-106
>prophage 157
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	2153854	2155279	5029620	tRNA	Acanthamoeba_polyphaga_mimivirus(100.0%)	1	NA	NA
AXS40327.1|2153854_2155279_+|tRNA	cysteine--tRNA ligase	tRNA	A0A0G2Y344	Acanthamoeba_polyphaga_mimivirus	36.1	3.3e-47
>prophage 158
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	2160971	2165223	5029620		Clostridium_phage(33.33%)	4	NA	NA
AXS40331.1|2160971_2161859_+	LysM peptidoglycan-binding domain-containing protein	NA	A0A0A7RW06	Clostridium_phage	45.1	1.9e-08
AXS40332.1|2162041_2162494_+	transcriptional regulator	NA	NA	NA	NA	NA
AXS40333.1|2162490_2164395_+	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.3	1.9e-45
AXS40334.1|2164521_2165223_+	phosphatidylserine decarboxylase	NA	A0A1V0SDU9	Indivirus	31.6	2.4e-11
>prophage 159
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	2186586	2187963	5029620		Emiliania_huxleyi_virus(100.0%)	1	NA	NA
AXS40352.1|2186586_2187963_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	V5LQ39	Emiliania_huxleyi_virus	33.0	7.9e-46
>prophage 160
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	2199253	2200264	5029620		Streptococcus_phage(100.0%)	1	NA	NA
AXS40357.1|2199253_2200264_-	WYL domain-containing protein	NA	A0A1B0RXM1	Streptococcus_phage	27.3	7.6e-14
>prophage 161
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	2211032	2212079	5029620		Enterobacteria_phage(100.0%)	1	NA	NA
AXS40366.1|2211032_2212079_-	LacI family transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	29.2	6.0e-22
>prophage 162
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	2227501	2229023	5029620		Staphylococcus_phage(50.0%)	2	NA	NA
AXS42551.1|2227501_2228230_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.9	8.2e-10
AXS40375.1|2228246_2229023_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	25.7	3.5e-11
>prophage 163
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	2264906	2273790	5029620	tRNA	Tupanvirus(33.33%)	5	NA	NA
AXS40404.1|2264906_2266244_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	27.6	1.3e-08
AXS42556.1|2266572_2267796_+	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
AXS40405.1|2267887_2268544_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	30.4	1.3e-09
AXS40406.1|2269216_2269675_+	hypothetical protein	NA	NA	NA	NA	NA
AXS40407.1|2270352_2273790_+	DNA polymerase III subunit alpha	NA	A0A291AVA6	Streptomyces_phage	36.2	2.0e-178
>prophage 164
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	2278569	2279340	5029620		Flavobacterium_phage(100.0%)	1	NA	NA
AXS40412.1|2278569_2279340_+	isoprenyl transferase	NA	R9W0U9	Flavobacterium_phage	38.8	1.0e-18
>prophage 165
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	2296034	2300487	5029620		Acinetobacter_phage(66.67%)	5	NA	NA
AXS42558.1|2296034_2296748_-	transcriptional repressor LexA	NA	A0A1B2APZ3	Phage_Wrath	37.7	3.2e-11
AXS40425.1|2296906_2298112_-	molybdopterin molybdenumtransferase MoeA	NA	NA	NA	NA	NA
AXS40426.1|2298124_2298619_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
AXS40427.1|2298627_2299428_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	51.7	3.8e-61
AXS40428.1|2299473_2300487_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	41.8	1.9e-65
>prophage 166
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	2304011	2310798	5029620		Only_Syngen_Nebraska_virus(33.33%)	6	NA	NA
AXS40431.1|2304011_2305640_+	CTP synthase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	49.3	2.5e-147
AXS40432.1|2305768_2307040_+	VOC family protein	NA	NA	NA	NA	NA
AXS40433.1|2307171_2307942_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
AXS42559.1|2307938_2309006_+	CDP-glucose 4,6-dehydratase	NA	J7Q7J8	Aeropyrum_coil-shaped_virus	30.0	3.3e-15
AXS40434.1|2309038_2310262_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
AXS40435.1|2310261_2310798_+	dTDP-4-keto-6-deoxy-D-glucose epimerase	NA	H9NC63	Sphingomonas_phage	35.6	8.7e-17
>prophage 167
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	2323973	2325605	5029620		Only_Syngen_Nebraska_virus(100.0%)	1	NA	NA
AXS40447.1|2323973_2325605_-	ABC transporter ATP-binding protein	NA	A0A1J0FA64	Only_Syngen_Nebraska_virus	28.4	7.7e-08
>prophage 168
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	2330315	2331695	5029620		Mycobacterium_phage(100.0%)	1	NA	NA
AXS40452.1|2330315_2331695_-	aspartate aminotransferase family protein	NA	A0A1C9EHH3	Mycobacterium_phage	27.5	2.7e-06
>prophage 169
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	2335449	2336247	5029620		Planktothrix_phage(100.0%)	1	NA	NA
AXS42561.1|2335449_2336247_+	ectoine/hydroxyectoine ABC transporter ATP-binding protein EhuA	NA	G9BWD6	Planktothrix_phage	35.8	2.8e-27
>prophage 170
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	2381917	2386924	5029620		Chrysochromulina_ericina_virus(33.33%)	3	NA	NA
AXS40492.1|2381917_2383267_+	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA	A0A0N7G7I9	Chrysochromulina_ericina_virus	33.1	4.4e-25
AXS40493.1|2383544_2385371_+	glutamine--fructose-6-phosphate transaminase (isomerizing)	NA	A7IW18	Paramecium_bursaria_Chlorella_virus	38.1	5.8e-105
AXS40494.1|2386207_2386924_+	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.7	1.6e-13
>prophage 171
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	2405341	2410597	5029620	tail	Streptomyces_phage(50.0%)	3	NA	NA
AXS40505.1|2405341_2406949_+|tail	phage tail sheath family protein	tail	A0A1J0GW47	Streptomyces_phage	32.9	8.9e-33
AXS40506.1|2407125_2409042_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AXS40507.1|2409502_2410597_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	1.8e-24
>prophage 172
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	2418182	2421842	5029620		Bradyrhizobium_phage(100.0%)	1	NA	NA
AXS40512.1|2418182_2421842_-	vitamin B12-dependent ribonucleotide reductase	NA	A0A1X9SGV9	Bradyrhizobium_phage	55.3	0.0e+00
>prophage 173
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	2425427	2426609	5029620		unidentified_phage(100.0%)	1	NA	NA
AXS40514.1|2425427_2426609_+	cysteine desulfurase	NA	H7BUW1	unidentified_phage	37.9	1.4e-27
>prophage 174
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	2430295	2438338	5029620		environmental_halophage(25.0%)	6	NA	NA
AXS40517.1|2430295_2431549_+	cysteine desulfurase	NA	Q2XUY6	environmental_halophage	41.1	1.1e-97
AXS42568.1|2431604_2432009_+	SUF system Fe-S cluster assembly protein	NA	NA	NA	NA	NA
AXS40518.1|2432055_2432424_+	iron-sulfur cluster assembly accessory protein	NA	A0A0P0CQC4	Ostreococcus_lucimarinus_virus	39.8	2.8e-14
AXS40519.1|2433197_2434250_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
AXS40520.1|2434380_2435946_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	35.6	1.3e-52
AXS40521.1|2436226_2438338_-	DNA topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	39.5	4.1e-110
>prophage 175
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	2451391	2465503	5029620		uncultured_Mediterranean_phage(80.0%)	14	NA	NA
AXS42569.1|2451391_2452249_+	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	35.0	9.6e-34
AXS40531.1|2452241_2452967_+	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	49.7	1.3e-44
AXS40532.1|2453044_2454205_+	ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	28.6	8.4e-17
AXS40533.1|2454284_2454515_+	twin-arginine translocase TatA/TatE family subunit	NA	A0A1B1IVR9	uncultured_Mediterranean_phage	61.4	5.7e-10
AXS40534.1|2454568_2455213_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA	NA
AXS40535.1|2455209_2456001_+	twin-arginine translocase subunit TatC	NA	A0A1B1IVR7	uncultured_Mediterranean_phage	48.4	2.9e-53
AXS40536.1|2457436_2458195_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	38.5	1.3e-39
AXS40537.1|2458454_2459066_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	43.1	1.7e-21
AXS40538.1|2459669_2460662_+	LysM peptidoglycan-binding domain-containing protein	NA	I2E8W3	Clostridium_phage	37.3	4.7e-16
AXS40539.1|2460549_2461053_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
AXS40540.1|2461075_2462050_-	ATP-binding protein	NA	NA	NA	NA	NA
AXS40541.1|2462262_2462586_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	37.4	1.2e-13
AXS40542.1|2462926_2464543_+	protein translocase subunit SecD	NA	NA	NA	NA	NA
AXS40543.1|2464561_2465503_+	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	49.2	6.1e-66
>prophage 176
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	2472216	2477318	5029620		uncultured_Mediterranean_phage(50.0%)	3	NA	NA
AXS42571.1|2472216_2475138_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	63.9	0.0e+00
AXS40549.1|2475771_2476554_+	SapC family protein	NA	NA	NA	NA	NA
AXS40550.1|2476763_2477318_+	single-stranded DNA-binding protein	NA	R9TP78	Rhizobium_phage	65.7	8.6e-44
>prophage 177
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	2484931	2496257	5029620	tRNA	uncultured_Mediterranean_phage(80.0%)	10	NA	NA
AXS40556.1|2484931_2487724_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.7	9.5e-99
AXS40557.1|2487880_2488207_-	hypothetical protein	NA	NA	NA	NA	NA
AXS40558.1|2488400_2488667_-	hypothetical protein	NA	NA	NA	NA	NA
AXS40559.1|2489224_2489521_-	hypothetical protein	NA	NA	NA	NA	NA
AXS40560.1|2489692_2490193_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	37.4	1.5e-26
AXS40561.1|2490255_2490771_+	peptidylprolyl isomerase	NA	A0A1B1IVS0	uncultured_Mediterranean_phage	56.2	4.5e-39
AXS40562.1|2492676_2493837_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	50.3	1.1e-98
AXS40563.1|2494002_2494359_-	cupin domain-containing protein	NA	NA	NA	NA	NA
AXS42573.1|2494410_2495292_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AXS40564.1|2495570_2496257_+|tRNA	tRNA-guanine transglycosylase	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	48.7	2.1e-47
>prophage 178
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	2501995	2509018	5029620		Paramecium_bursaria_Chlorella_virus(25.0%)	5	NA	NA
AXS40569.1|2501995_2503300_-	nucleotide sugar dehydrogenase	NA	M1H3J6	Paramecium_bursaria_Chlorella_virus	28.1	1.3e-21
AXS40570.1|2503289_2504300_-	NAD-dependent epimerase	NA	A0A1D7XFE8	Escherichia_phage	24.0	1.2e-22
AXS40571.1|2504432_2505140_-	hypothetical protein	NA	NA	NA	NA	NA
AXS40572.1|2505407_2506244_+	3-deoxy-8-phosphooctulonate synthase	NA	E3T537	Cafeteria_roenbergensis_virus	43.5	3.4e-52
AXS40573.1|2507743_2509018_+	phosphopyruvate hydratase	NA	W6LP63	Streptococcus_phage	62.1	1.9e-139
>prophage 179
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	2529148	2536419	5029620		Acinetobacter_phage(66.67%)	5	NA	NA
AXS40589.1|2529148_2529880_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	35.5	2.9e-23
AXS40590.1|2529956_2530934_+	quinone oxidoreductase	NA	NA	NA	NA	NA
AXS40591.1|2532177_2532528_+	hydroxyisourate hydrolase	NA	NA	NA	NA	NA
AXS40592.1|2532531_2534028_+	xanthine dehydrogenase small subunit	NA	A0A0P0IVM8	Acinetobacter_phage	42.7	6.4e-102
AXS40593.1|2534094_2536419_+	xanthine dehydrogenase molybdopterin binding subunit	NA	A0A0P0I429	Acinetobacter_phage	48.6	3.2e-201
>prophage 180
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	2542346	2543711	5029620		Enterobacteria_phage(100.0%)	1	NA	NA
AXS40597.1|2542346_2543711_+	purine permease	NA	Q9KX94	Enterobacteria_phage	28.6	6.4e-24
>prophage 181
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	2557960	2559460	5029620		Mycoplasma_phage(100.0%)	1	NA	NA
AXS40607.1|2557960_2559460_+	leucyl aminopeptidase	NA	Q6GYZ8	Mycoplasma_phage	36.0	4.2e-45
>prophage 182
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	2562910	2564797	5029620		Tupanvirus(100.0%)	1	NA	NA
AXS40610.1|2562910_2564797_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	32.2	3.2e-66
>prophage 183
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	2568056	2568479	5029620		Megavirus(100.0%)	1	NA	NA
AXS40614.1|2568056_2568479_+	nucleoside-diphosphate kinase	NA	L7Y4C4	Megavirus	40.2	1.6e-18
>prophage 184
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	2573075	2574820	5029620		Synechococcus_phage(50.0%)	2	NA	NA
AXS40619.1|2573075_2573741_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	34.3	1.2e-23
AXS40620.1|2573737_2574820_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	42.3	3.0e-61
>prophage 185
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	2587118	2590549	5029620		Synechococcus_phage(50.0%)	4	NA	NA
AXS40629.1|2587118_2588018_+	alpha-1,2-fucosyltransferase	NA	A0A222YW11	Synechococcus_phage	34.2	5.2e-22
AXS40630.1|2588026_2588896_+	hypothetical protein	NA	NA	NA	NA	NA
AXS40631.1|2588942_2589668_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AXS40632.1|2589727_2590549_-	FkbM family methyltransferase	NA	Q58M88	Prochlorococcus_phage	41.0	3.6e-38
>prophage 186
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	2595936	2606252	5029620		Synechococcus_phage(40.0%)	9	NA	NA
AXS40637.1|2595936_2596758_+	transketolase	NA	G9E5U1	Micromonas_pusilla_virus	30.1	3.3e-07
AXS40638.1|2597756_2598929_+	DegT/DnrJ/EryC1/StrS aminotransferase family protein	NA	A0A0E3G3R2	Synechococcus_phage	39.3	8.1e-68
AXS40639.1|2598933_2599662_+	phosphohexose mutase	NA	NA	NA	NA	NA
AXS40640.1|2599780_2600719_+	NAD(P)-dependent oxidoreductase	NA	A0A0F7LC08	uncultured_marine_virus	40.7	3.5e-61
AXS40641.1|2600770_2601418_+	hypothetical protein	NA	NA	NA	NA	NA
AXS40642.1|2601330_2601972_+	hypothetical protein	NA	NA	NA	NA	NA
AXS40643.1|2603214_2604171_+	GDP-L-fucose synthase	NA	D1LW79	Prochlorococcus_phage	53.7	1.3e-95
AXS40644.1|2604217_2605372_-	hypothetical protein	NA	NA	NA	NA	NA
AXS40645.1|2605769_2606252_+	adenosylmethionine decarboxylase	NA	E3SIG3	Synechococcus_phage	45.3	2.7e-17
>prophage 187
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	2620624	2628731	5029620	tRNA	Pseudomonas_phage(33.33%)	5	NA	NA
AXS42580.1|2620624_2621146_-	CinA family protein	NA	B5TK85	Pseudomonas_phage	48.0	6.9e-19
AXS40656.1|2621183_2622449_-	bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA	NA
AXS40657.1|2622564_2623623_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
AXS42581.1|2623622_2624780_+	two-component sensor histidine kinase	NA	Q8QKV7	Ectocarpus_siliculosus_virus	24.7	2.5e-08
AXS42582.1|2626538_2628731_+	PAS domain-containing sensor histidine kinase	NA	W8CYF6	Bacillus_phage	22.9	2.1e-08
>prophage 188
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	2645222	2651230	5029620	tRNA	Streptococcus_phage(40.0%)	5	NA	NA
AXS40670.1|2645222_2646785_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	39.4	2.8e-100
AXS40671.1|2646854_2647940_-	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	37.5	9.0e-05
AXS40672.1|2647941_2648676_-	dTMP kinase	NA	M1PSC7	Streptococcus_phage	39.9	8.5e-31
AXS42584.1|2648692_2649805_-	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	34.3	8.9e-48
AXS42585.1|2650156_2651230_-	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	52.8	1.3e-19
>prophage 189
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	2683048	2683831	5029620		Planktothrix_phage(100.0%)	1	NA	NA
AXS40693.1|2683048_2683831_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.3	4.1e-15
>prophage 190
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	2697166	2697811	5029620		Liberibacter_phage(100.0%)	1	NA	NA
AXS40703.1|2697166_2697811_-	guanylate kinase	NA	E7DUI8	Liberibacter_phage	30.6	8.2e-14
>prophage 191
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	2701597	2702848	5029620		Prochlorococcus_phage(50.0%)	2	NA	NA
AXS40705.1|2701597_2701834_-	acyl carrier protein	NA	E3SSM9	Prochlorococcus_phage	55.1	1.4e-08
AXS40706.1|2702110_2702848_-	3-oxoacyl-[acyl-carrier-protein] reductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	33.5	3.8e-15
>prophage 192
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	2707491	2708976	5029620		Streptococcus_phage(100.0%)	1	NA	NA
AXS40711.1|2707491_2708976_+	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	35.6	5.3e-72
>prophage 193
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	2712489	2713998	5029620		Mollivirus(100.0%)	1	NA	NA
AXS40713.1|2712489_2713998_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	32.5	6.0e-47
>prophage 194
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	2718629	2719466	5029620		Ostreococcus_lucimarinus_virus(100.0%)	1	NA	NA
AXS40717.1|2718629_2719466_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	M4QNT1	Ostreococcus_lucimarinus_virus	35.3	9.6e-39
>prophage 195
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	2739380	2740064	5029620		Bacillus_phage(100.0%)	1	NA	NA
AXS42592.1|2739380_2740064_+	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	34.5	4.9e-33
>prophage 196
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	2752642	2754145	5029620		Klosneuvirus(100.0%)	1	NA	NA
AXS40738.1|2752642_2754145_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	39.3	2.9e-94
>prophage 197
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	2778664	2781413	5029620		Cedratvirus(50.0%)	3	NA	NA
AXS40756.1|2778664_2779441_-	ABC transporter ATP-binding protein	NA	A0A2R8FFL6	Cedratvirus	25.0	3.2e-12
AXS40757.1|2779437_2780430_-	iron ABC transporter permease	NA	NA	NA	NA	NA
AXS40758.1|2780426_2781413_-	iron ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	24.4	1.8e-07
>prophage 198
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	2795546	2797277	5029620		Kurlavirus(100.0%)	1	NA	NA
AXS40768.1|2795546_2797277_-	bifunctional protein-serine/threonine kinase/phosphatase	NA	A0A1S5XYT8	Kurlavirus	27.9	1.4e-15
>prophage 199
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	2820716	2822888	5029620		Bacillus_phage(100.0%)	1	NA	NA
AXS40788.1|2820716_2822888_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.6	1.4e-41
>prophage 200
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	2853757	2866122	5029620		Tupanvirus(100.0%)	2	NA	NA
AXS40803.1|2853757_2862694_+	amino acid adenylation domain-containing protein	NA	A0A2K9KZV5	Tupanvirus	25.6	6.4e-64
AXS40804.1|2862693_2866122_+	non-ribosomal peptide synthetase	NA	A0A2K9L3I8	Tupanvirus	27.6	1.2e-42
>prophage 201
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	2886013	2889138	5029620		uncultured_phage(50.0%)	3	NA	NA
AXS40818.1|2886013_2887183_+	glycosyltransferase family 1 protein	NA	D6PH77	uncultured_phage	34.7	6.7e-54
AXS42599.1|2887208_2888669_-	aspartate kinase	NA	NA	NA	NA	NA
AXS40819.1|2888748_2889138_-	ectoine synthase	NA	A0A068F3J9	Mycobacterium_phage	41.2	2.8e-17
>prophage 202
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	2892401	2892677	5029620		Burkholderia_virus(100.0%)	1	NA	NA
AXS40823.1|2892401_2892677_-	HU family DNA-binding protein	NA	A4JWM7	Burkholderia_virus	60.7	6.6e-21
>prophage 203
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	2897283	2897919	5029620		Agrobacterium_phage(100.0%)	1	NA	NA
AXS40824.1|2897283_2897919_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	58.6	2.3e-61
>prophage 204
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	2906093	2906813	5029620		Planktothrix_phage(100.0%)	1	NA	NA
AXS40828.1|2906093_2906813_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.6	5.4e-22
>prophage 205
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	2910005	2911259	5029620	tRNA	Cronobacter_phage(100.0%)	1	NA	NA
AXS40830.1|2910005_2911259_+|tRNA	tyrosine--tRNA ligase	tRNA	K4F5T3	Cronobacter_phage	36.5	2.1e-58
>prophage 206
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	2915791	2917171	5029620		Rhodococcus_phage(100.0%)	1	NA	NA
AXS40833.1|2915791_2917171_+	M23 family peptidase	NA	A0A2D0ZM66	Rhodococcus_phage	47.3	1.1e-18
>prophage 207
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	2921407	2922613	5029620		Thermus_virus(100.0%)	1	NA	NA
AXS42604.1|2921407_2922613_-	N-acetylmuramoyl-L-alanine amidase	NA	C8CHK8	Thermus_virus	33.7	5.5e-11
>prophage 208
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	2930644	2931241	5029620		Bacillus_phage(100.0%)	1	NA	NA
AXS40839.1|2930644_2931241_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	29.7	2.8e-08
>prophage 209
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	2961798	2962561	5029620	transposase	Paenibacillus_phage(100.0%)	1	NA	NA
AXS40862.1|2961798_2962561_+|transposase	IS5 family transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	44.3	8.3e-21
>prophage 210
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	2965636	2966593	5029620		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
AXS40864.1|2965636_2966593_+	aspartate carbamoyltransferase catalytic subunit	NA	A7RB08	Paramecium_bursaria_Chlorella_virus	33.7	7.2e-30
>prophage 211
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	2973259	2975509	5029620		Lactococcus_phage(100.0%)	1	NA	NA
AXS42611.1|2973259_2975509_+	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	33.9	3.8e-58
>prophage 212
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	2979063	2980839	5029620		Bacillus_phage(50.0%)	2	NA	NA
AXS40872.1|2979063_2980434_-	PleD family two-component system response regulator	NA	W8CYM9	Bacillus_phage	40.7	2.2e-16
AXS40873.1|2980467_2980839_-	response regulator	NA	A0A1V0SGR9	Hokovirus	29.4	2.5e-07
>prophage 213
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	2987808	2988018	5029620		Morganella_phage(100.0%)	1	NA	NA
AXS40881.1|2987808_2988018_-	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	53.3	2.8e-11
>prophage 214
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	2994373	2997136	5029620	protease	Agrobacterium_phage(50.0%)	2	NA	NA
AXS40887.1|2994373_2996791_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	43.5	3.6e-179
AXS40888.1|2996800_2997136_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	40.2	4.3e-14
>prophage 215
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	3011792	3016118	5029620		Bacillus_phage(50.0%)	3	NA	NA
AXS40897.1|3011792_3012719_-	response regulator	NA	W8CYM9	Bacillus_phage	33.6	3.6e-10
AXS40898.1|3012725_3014357_-	PAS domain-containing protein	NA	NA	NA	NA	NA
AXS40899.1|3014510_3016118_-	methylcrotonoyl-CoA carboxylase	NA	A0A1B2ITV7	Pike_perch_iridovirus	52.4	5.1e-20
>prophage 216
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	3019208	3021245	5029620	protease	Agrobacterium_phage(50.0%)	2	NA	NA
AXS40904.1|3019208_3019826_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	36.3	5.6e-28
AXS40905.1|3020069_3021245_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	31.7	1.6e-15
>prophage 217
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	3037432	3038464	5029620		Streptococcus_phage(100.0%)	1	NA	NA
AXS40916.1|3037432_3038464_+	cysteine synthase A	NA	A0A1X9I5K7	Streptococcus_phage	38.1	4.5e-46
>prophage 218
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	3044541	3045342	5029620		Planktothrix_phage(100.0%)	1	NA	NA
AXS40921.1|3044541_3045342_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.5	2.7e-30
>prophage 219
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	3048749	3049727	5029620		uncultured_Mediterranean_phage(100.0%)	1	NA	NA
AXS42620.1|3048749_3049727_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.8	1.9e-78
>prophage 220
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	3057745	3058905	5029620		uncultured_Mediterranean_phage(50.0%)	2	NA	NA
AXS42625.1|3057745_3058255_-	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	39.8	8.8e-11
AXS40926.1|3058320_3058905_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	45.2	4.7e-08
>prophage 221
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	3070318	3071830	5029620		Anomala_cuprea_entomopoxvirus(100.0%)	1	NA	NA
AXS40934.1|3070318_3071830_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	27.4	3.1e-11
>prophage 222
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	3086967	3089987	5029620	transposase	Paenibacillus_phage(50.0%)	3	NA	NA
AXS40947.1|3086967_3087731_-|transposase	IS5 family transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	44.3	1.1e-20
AXS40948.1|3088367_3088838_-	iron-responsive transcriptional regulator RirA	NA	NA	NA	NA	NA
AXS40949.1|3089159_3089987_-	sugar ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	3.9e-16
>prophage 223
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	3100304	3102836	5029620		Bacillus_phage(100.0%)	1	NA	NA
AXS40954.1|3100304_3102836_-	EAL domain-containing protein	NA	A0A127AWB9	Bacillus_phage	34.9	1.9e-13
>prophage 224
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	3146380	3151321	5029620		uncultured_Mediterranean_phage(100.0%)	1	NA	NA
AXS40980.1|3146380_3151321_-	DUF1998 domain-containing protein	NA	A0A1B1IUF6	uncultured_Mediterranean_phage	23.6	8.4e-74
>prophage 225
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	3156104	3164048	5029620	portal	Rhizobium_phage(75.0%)	11	NA	NA
AXS40982.1|3156104_3156533_-|portal	phage portal protein	portal	A0A068CC70	Rhizobium_phage	52.4	1.0e-28
AXS40983.1|3156877_3157585_-	hypothetical protein	NA	NA	NA	NA	NA
AXS40984.1|3157890_3159465_-	hypothetical protein	NA	A0A221SAP5	Ralstonia_phage	36.9	1.4e-78
AXS40985.1|3159461_3160703_-	hypothetical protein	NA	R9TNC4	Rhizobium_phage	29.2	9.9e-24
AXS40986.1|3160683_3160941_-	hypothetical protein	NA	NA	NA	NA	NA
AXS40987.1|3161127_3161346_-	hypothetical protein	NA	NA	NA	NA	NA
AXS40988.1|3161335_3161815_-	hypothetical protein	NA	NA	NA	NA	NA
AXS40989.1|3161811_3162438_-	hypothetical protein	NA	NA	NA	NA	NA
AXS40990.1|3162434_3162947_-	hypothetical protein	NA	NA	NA	NA	NA
AXS40991.1|3162943_3163267_-	hypothetical protein	NA	NA	NA	NA	NA
AXS40992.1|3163352_3164048_+	helix-turn-helix transcriptional regulator	NA	R9TRS6	Rhizobium_phage	37.8	1.0e-38
>prophage 226
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	3178643	3179663	5029620	integrase	Rhizobium_phage(100.0%)	1	3171738:3171752	3182315:3182329
3171738:3171752	attL	ATGAGCCTGCGGATC	NA	NA	NA	NA
AXS41004.1|3178643_3179663_+|integrase	site-specific integrase	integrase	A0A068CCA6	Rhizobium_phage	25.1	2.2e-13
AXS41004.1|3178643_3179663_+|integrase	site-specific integrase	integrase	A0A068CCA6	Rhizobium_phage	25.1	2.2e-13
3182315:3182329	attR	GATCCGCAGGCTCAT	NA	NA	NA	NA
>prophage 227
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	3193790	3195527	5029620		Ostreococcus_lucimarinus_virus(100.0%)	1	NA	NA
AXS41012.1|3193790_3195527_-	oxalyl-CoA decarboxylase	NA	E5ERI2	Ostreococcus_lucimarinus_virus	23.7	8.7e-18
>prophage 228
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	3201511	3202381	5029620		Tupanvirus(100.0%)	1	NA	NA
AXS41018.1|3201511_3202381_+	succinate--CoA ligase subunit alpha	NA	A0A2K9L5E9	Tupanvirus	29.9	5.0e-14
>prophage 229
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	3210639	3216343	5029620	protease	Kaumoebavirus(33.33%)	6	NA	NA
AXS42638.1|3210639_3211431_-	fatty acid hydroxylase family protein	NA	A0A1V0CNR7	Kaumoebavirus	25.9	8.3e-08
AXS41027.1|3211576_3212383_-	fatty acid hydroxylase family protein	NA	NA	NA	NA	NA
AXS41028.1|3212533_3212986_-	hypothetical protein	NA	NA	NA	NA	NA
AXS41029.1|3212949_3213297_-	hypothetical protein	NA	NA	NA	NA	NA
AXS41030.1|3213609_3214917_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	39.3	1.8e-76
AXS41031.1|3214927_3216343_-|protease	DegQ family serine endoprotease	protease	A0A1B1IT49	uncultured_Mediterranean_phage	28.1	4.0e-21
>prophage 230
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	3225035	3225617	5029620		Tupanvirus(100.0%)	1	NA	NA
AXS41039.1|3225035_3225617_-	adenylate kinase	NA	A0A2K9L833	Tupanvirus	31.4	3.2e-09
>prophage 231
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	3236824	3246277	5029620		Bodo_saltans_virus(33.33%)	6	NA	NA
AXS41060.1|3236824_3238015_-	elongation factor Tu	NA	A0A2H4UVR3	Bodo_saltans_virus	26.3	5.8e-13
AXS41061.1|3238063_3240139_-	elongation factor G	NA	E4ZFJ7	Streptococcus_phage	27.4	3.8e-60
AXS41062.1|3240157_3240628_-	30S ribosomal protein S7	NA	NA	NA	NA	NA
AXS41063.1|3240670_3241042_-	30S ribosomal protein S12	NA	NA	NA	NA	NA
AXS41064.1|3241683_3241989_-	regulator	NA	NA	NA	NA	NA
AXS41065.1|3242074_3246277_-	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	27.9	5.1e-72
>prophage 232
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	3253507	3255751	5029620		Rhizobium_phage(50.0%)	3	NA	NA
AXS41070.1|3253507_3254038_-	transcription termination/antitermination protein NusG	NA	A0A068C9G5	Rhizobium_phage	30.8	4.9e-12
AXS41071.1|3254076_3254274_-	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
AXS41072.1|3254560_3255751_-	elongation factor Tu	NA	A0A2H4UVR3	Bodo_saltans_virus	26.3	5.8e-13
>prophage 233
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	3272253	3273768	5029620		Pseudomonas_phage(100.0%)	1	NA	NA
AXS41087.1|3272253_3273768_-	hypothetical protein	NA	A0A2D1GQZ5	Pseudomonas_phage	36.2	2.5e-21
>prophage 234
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	3278020	3279979	5029620	tRNA	Tupanvirus(100.0%)	1	NA	NA
AXS41091.1|3278020_3279979_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	37.5	4.7e-121
>prophage 235
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	3286002	3290818	5029620		Vibrio_phage(66.67%)	6	NA	NA
AXS42643.1|3286002_3286317_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	40.6	1.2e-10
AXS41094.1|3286768_3287185_+	universal stress protein	NA	NA	NA	NA	NA
AXS41095.1|3287270_3288911_+	BCCT family transporter	NA	A0A2I7QNT1	Vibrio_phage	26.7	3.1e-25
AXS41096.1|3288998_3289394_-	hypothetical protein	NA	NA	NA	NA	NA
AXS41097.1|3289440_3289887_-	iron-sulfur cluster assembly scaffold protein	NA	NA	NA	NA	NA
AXS41098.1|3290191_3290818_+	GTP cyclohydrolase I FolE	NA	A0A2I7S8W4	Vibrio_phage	46.2	5.3e-42
>prophage 236
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	3296735	3297353	5029620		Rhizobium_phage(100.0%)	1	NA	NA
AXS41102.1|3296735_3297353_+	transglutaminase	NA	V9QJI1	Rhizobium_phage	30.5	4.2e-15
>prophage 237
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	3302419	3303208	5029620		Mycobacterium_phage(100.0%)	1	NA	NA
AXS41108.1|3302419_3303208_-	alpha/beta hydrolase	NA	A0A0S2MV32	Mycobacterium_phage	26.5	4.5e-06
>prophage 238
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	3325318	3335055	5029620		Bacillus_phage(33.33%)	6	NA	NA
AXS41124.1|3325318_3327652_+	bifunctional diguanylate cyclase/phosphodiesterase	NA	A0A127AWB9	Bacillus_phage	33.9	5.6e-12
AXS41125.1|3327708_3328140_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
AXS41126.1|3328177_3329065_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AXS41127.1|3329146_3331231_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	38.0	2.1e-10
AXS41128.1|3331370_3332336_-	methylmalonyl Co-A mutase-associated GTPase MeaB	NA	NA	NA	NA	NA
AXS42648.1|3332385_3335055_-	pyruvate, phosphate dikinase	NA	A0A2D2W2B1	Stenotrophomonas_phage	40.4	2.3e-86
>prophage 239
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	3348299	3349088	5029620		Bacillus_virus(100.0%)	1	NA	NA
AXS41141.1|3348299_3349088_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	1.5e-12
>prophage 240
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	3370582	3371911	5029620		Gordonia_phage(100.0%)	1	NA	NA
AXS41158.1|3370582_3371911_+	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	33.7	2.3e-18
>prophage 241
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	3375645	3376446	5029620		Synechococcus_phage(100.0%)	1	NA	NA
AXS41164.1|3375645_3376446_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	G8EYA2	Synechococcus_phage	41.3	1.9e-44
>prophage 242
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	3379489	3381580	5029620		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
AXS41170.1|3379489_3381580_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	67.3	2.0e-08
>prophage 243
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	3389223	3398021	5029620		Microbacterium_phage(33.33%)	8	NA	NA
AXS41177.1|3389223_3391458_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	42.6	2.0e-160
AXS41178.1|3391503_3391737_+	BolA family transcriptional regulator	NA	NA	NA	NA	NA
AXS41179.1|3391811_3392147_+	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA	NA
AXS41180.1|3392547_3392829_+	hypothetical protein	NA	NA	NA	NA	NA
AXS41181.1|3392875_3393877_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AXS41182.1|3394003_3395461_-	diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	36.1	3.6e-17
AXS41183.1|3395704_3396322_-	30S ribosomal protein S4	NA	NA	NA	NA	NA
AXS41184.1|3396569_3398021_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	31.5	5.7e-47
>prophage 244
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	3413214	3426003	5029620	tRNA	Tupanvirus(25.0%)	7	NA	NA
AXS41191.1|3413214_3415884_-|tRNA	alanine--tRNA ligase	tRNA	A0A2K9L1X7	Tupanvirus	39.4	2.7e-74
AXS41192.1|3416271_3417345_-	recombinase RecA	NA	A0A0S2MVG1	Bacillus_phage	63.8	2.4e-119
AXS41193.1|3417650_3418637_+	kinase	NA	NA	NA	NA	NA
AXS41194.1|3419833_3421006_+	cell surface protein	NA	G4KKC9	Yersinia_phage	39.7	1.9e-72
AXS41195.1|3421047_3421986_+	hypothetical protein	NA	NA	NA	NA	NA
AXS41196.1|3422020_3423457_+	hypothetical protein	NA	NA	NA	NA	NA
AXS41197.1|3423453_3426003_-	response regulator	NA	Q8QKV7	Ectocarpus_siliculosus_virus	27.8	1.4e-11
>prophage 245
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	3473355	3473781	5029620		Escherichia_phage(100.0%)	1	NA	NA
AXS41237.1|3473355_3473781_-	universal stress protein	NA	A0A0U2KD47	Escherichia_phage	70.6	9.3e-06
>prophage 246
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	3477314	3478037	5029620		Planktothrix_phage(100.0%)	1	NA	NA
AXS42661.1|3477314_3478037_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.0	1.6e-29
>prophage 247
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	3489220	3490027	5029620		Pithovirus(100.0%)	1	NA	NA
AXS42662.1|3489220_3490027_-	ABC transporter ATP-binding protein	NA	W5SAS9	Pithovirus	29.8	2.6e-09
>prophage 248
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	3496175	3496979	5029620		uncultured_virus(100.0%)	1	NA	NA
AXS41252.1|3496175_3496979_-	UDP-2,3-diacylglucosamine diphosphatase	NA	A0A218MKA7	uncultured_virus	45.2	1.0e-61
>prophage 249
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	3511019	3512633	5029620		Hepacivirus(100.0%)	1	NA	NA
AXS42664.1|3511019_3512633_-	long-chain fatty acid--CoA ligase	NA	Q75ZG1	Hepacivirus	29.2	1.6e-45
>prophage 250
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	3516961	3518744	5029620		Staphylococcus_phage(50.0%)	2	NA	NA
AXS41262.1|3516961_3518017_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	25.0	4.1e-10
AXS41263.1|3518009_3518744_-	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	20.5	5.0e-07
>prophage 251
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	3529081	3535993	5029620		uncultured_Mediterranean_phage(20.0%)	7	NA	NA
AXS41271.1|3529081_3530365_-	adenylate/guanylate cyclase domain-containing protein	NA	A0A1B1IWY2	uncultured_Mediterranean_phage	29.2	3.4e-11
AXS41272.1|3530377_3530806_-	transcriptional repressor	NA	NA	NA	NA	NA
AXS41273.1|3531618_3532497_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.6	5.8e-10
AXS41274.1|3532716_3533658_+	zinc ABC transporter substrate-binding protein ZnuA	NA	NA	NA	NA	NA
AXS41275.1|3533783_3535361_+	adenylate/guanylate cyclase domain-containing protein	NA	A0A218MLZ2	uncultured_virus	33.9	3.8e-28
AXS41276.1|3535371_3535647_-	addiction module antidote protein, HigA family	NA	M9MUN2	Rhodococcus_phage	42.4	1.4e-10
AXS41277.1|3535711_3535993_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A222YWE2	Escherichia_phage	47.7	7.0e-10
>prophage 252
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	3540209	3541976	5029620		Yellowstone_lake_phycodnavirus(100.0%)	1	NA	NA
AXS41284.1|3540209_3541976_+	acetolactate synthase 3 large subunit	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	29.7	7.2e-52
>prophage 253
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	3565777	3567253	5029620		uncultured_Mediterranean_phage(100.0%)	1	NA	NA
AXS41301.1|3565777_3567253_-	Do family serine endopeptidase	NA	A0A1B1IT49	uncultured_Mediterranean_phage	28.4	3.0e-19
>prophage 254
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	3571743	3572550	5029620		Microbacterium_phage(100.0%)	1	NA	NA
AXS42670.1|3571743_3572550_-	thymidylate synthase	NA	A0A2R4A1R4	Microbacterium_phage	67.5	1.7e-104
>prophage 255
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	3590661	3602539	5029620	transposase	Acinetobacter_phage(25.0%)	9	NA	NA
AXS41318.1|3590661_3592476_-	aminopeptidase P family protein	NA	A0A0P0I8D7	Acinetobacter_phage	35.9	1.1e-90
AXS41319.1|3592859_3593078_+	hypothetical protein	NA	NA	NA	NA	NA
AXS41320.1|3593132_3594020_-	50S ribosomal protein L11 methyltransferase	NA	NA	NA	NA	NA
AXS41321.1|3594018_3594777_+	hypothetical protein	NA	NA	NA	NA	NA
AXS41322.1|3595108_3596038_+|transposase	IS110 family transposase	transposase	Q75QL1	Wolbachia_phage	33.9	3.6e-26
AXS41323.1|3596210_3596498_-	GIY-YIG nuclease family protein	NA	NA	NA	NA	NA
AXS41324.1|3597157_3599608_-	ATP-dependent DNA helicase	NA	A7KV33	Bacillus_phage	37.9	1.9e-114
AXS41325.1|3599725_3600277_-	cytochrome b	NA	NA	NA	NA	NA
AXS41326.1|3600382_3602539_-	NAD-dependent DNA ligase LigA	NA	A0A0K2QQN8	Ralstonia_phage	39.2	1.2e-122
>prophage 256
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	3628756	3633805	5029620		Sinorhizobium_phage(33.33%)	5	NA	NA
AXS41339.1|3628756_3629515_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A0F6R5Z1	Sinorhizobium_phage	28.2	2.0e-11
AXS42675.1|3630292_3630775_-	hypothetical protein	NA	NA	NA	NA	NA
AXS41340.1|3630962_3632195_-	agmatinase	NA	NA	NA	NA	NA
AXS41341.1|3632207_3632987_-	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	25.1	1.1e-15
AXS41342.1|3632983_3633805_-	ABC transporter permease	NA	G3M9Y4	Bacillus_virus	22.3	3.9e-08
>prophage 257
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	3658155	3667939	5029620		uncultured_Caudovirales_phage(50.0%)	6	NA	NA
AXS41358.1|3658155_3659139_-	zinc-binding alcohol dehydrogenase family protein	NA	A0A2K9V7Y5	Bandra_megavirus	32.6	1.7e-18
AXS42680.1|3660354_3661065_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	79.9	8.0e-95
AXS41359.1|3661069_3661486_-	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	64.8	2.1e-39
AXS41360.1|3661556_3661940_-	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AXS41361.1|3662327_3663131_+	hypothetical protein	NA	NA	NA	NA	NA
AXS41362.1|3664390_3667939_+	N-acetylglutaminylglutamine amidotransferase	NA	F2Y1H0	Organic_Lake_phycodnavirus	27.6	7.0e-30
>prophage 258
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	3670942	3676576	5029620		Dickeya_phage(50.0%)	3	NA	NA
AXS41365.1|3670942_3674692_-	methionine synthase	NA	A0A140XBC7	Dickeya_phage	60.3	2.3e-15
AXS41366.1|3674691_3675600_-	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
AXS42681.1|3675601_3676576_-	methyltransferase domain-containing protein	NA	S4VUD3	Pandoravirus	38.5	8.1e-05
>prophage 259
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	3695055	3700331	5029620		Tupanvirus(50.0%)	3	NA	NA
AXS42685.1|3695055_3696708_-	energy-dependent translational throttle protein EttA	NA	A0A2K9L3Z8	Tupanvirus	27.7	8.0e-45
AXS41378.1|3696956_3697214_+	hypothetical protein	NA	NA	NA	NA	NA
AXS41379.1|3697703_3700331_+	EAL domain-containing protein	NA	A0A127AWB9	Bacillus_phage	31.5	5.4e-11
>prophage 260
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	3706932	3712309	5029620		Flavobacterium_phage(50.0%)	5	NA	NA
AXS41383.1|3706932_3708753_+	cytochrome c oxidase subunit I	NA	R9VX24	Flavobacterium_phage	48.6	5.0e-32
AXS41384.1|3708749_3709409_+	cytochrome-c oxidase	NA	NA	NA	NA	NA
AXS41385.1|3709497_3710169_+	bb3-type cytochrome oxidase subunit IV	NA	NA	NA	NA	NA
AXS41386.1|3710786_3710990_+	dodecin domain-containing protein	NA	NA	NA	NA	NA
AXS41387.1|3711565_3712309_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.3	2.6e-35
>prophage 261
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	3719311	3720175	5029620		Klosneuvirus(100.0%)	1	NA	NA
AXS41393.1|3719311_3720175_+	NmrA/HSCARG family protein	NA	A0A1V0SLC2	Klosneuvirus	35.3	1.1e-08
>prophage 262
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	3725084	3727418	5029620		uncultured_virus(100.0%)	1	NA	NA
AXS41400.1|3725084_3727418_+	heavy metal translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	34.7	1.7e-77
>prophage 263
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	3730779	3731673	5029620		Staphylococcus_phage(100.0%)	1	NA	NA
AXS41404.1|3730779_3731673_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	36.4	5.0e-25
>prophage 264
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	3739111	3739858	5029620		Aeromonas_phage(100.0%)	1	NA	NA
AXS41407.1|3739111_3739858_+	LuxR family transcriptional regulator	NA	A0A1I9KF49	Aeromonas_phage	25.4	6.9e-12
>prophage 265
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	3763162	3763471	5029620		Sinorhizobium_phage(100.0%)	1	NA	NA
AXS41423.1|3763162_3763471_+	septal ring lytic transglycosylase RlpA family protein	NA	A0A0F6SJ38	Sinorhizobium_phage	55.3	2.2e-17
>prophage 266
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	3767868	3769546	5029620		Bartonella_henselae_phage(50.0%)	2	NA	NA
AXS41429.1|3767868_3768537_-	porin family protein	NA	O11861	Bartonella_henselae_phage	27.2	2.1e-12
AXS42698.1|3768769_3769546_+	glycosyltransferase family 2 protein	NA	S5WBE2	Pseudomonas_phage	31.5	8.4e-05
>prophage 267
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	3777228	3778506	5029620		Bacillus_phage(100.0%)	1	NA	NA
AXS41435.1|3777228_3778506_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	41.7	1.4e-17
>prophage 268
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	3784760	3785492	5029620		Bacillus_phage(100.0%)	1	NA	NA
AXS41443.1|3784760_3785492_+	response regulator	NA	W8CYM9	Bacillus_phage	36.7	1.6e-37
>prophage 269
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	3795299	3796232	5029620		Hokovirus(100.0%)	1	NA	NA
AXS41453.1|3795299_3796232_+	ribose-phosphate pyrophosphokinase	NA	A0A1V0SHF7	Hokovirus	35.7	7.7e-45
>prophage 270
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	3802573	3803122	5029620		Klosneuvirus(100.0%)	1	NA	NA
AXS41460.1|3802573_3803122_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.8	8.8e-33
>prophage 271
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	3867033	3867861	5029620		Bacillus_virus(100.0%)	1	NA	NA
AXS42706.1|3867033_3867861_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	39.3	1.0e-32
>prophage 272
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	3889414	3890512	5029620		Mycoplasma_phage(100.0%)	1	NA	NA
AXS41521.1|3889414_3890512_-	ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	45.7	7.4e-23
>prophage 273
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	3901205	3902198	5029620		Bacillus_virus(100.0%)	1	NA	NA
AXS41531.1|3901205_3902198_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.9	1.0e-26
>prophage 274
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	3929259	3930762	5029620		Catovirus(100.0%)	1	NA	NA
AXS41548.1|3929259_3930762_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	28.0	2.6e-18
>prophage 275
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	3935905	3936634	5029620		Chlorella_virus(100.0%)	1	NA	NA
AXS41553.1|3935905_3936634_-	ABC transporter ATP-binding protein	NA	Q66093	Chlorella_virus	27.2	2.0e-08
>prophage 276
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	3944097	3948088	5029620		Bacillus_virus(66.67%)	5	NA	NA
AXS41559.1|3944097_3944877_-	3-oxoacyl-ACP reductase FabG	NA	Q06VL0	Trichoplusia_ni_ascovirus	37.3	4.8e-24
AXS41560.1|3944873_3945653_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
AXS41561.1|3945659_3946430_-	creatininase	NA	NA	NA	NA	NA
AXS41562.1|3946457_3947267_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.7	3.1e-34
AXS42713.1|3947263_3948088_-	ABC transporter permease	NA	G3M9Y4	Bacillus_virus	29.6	8.9e-21
>prophage 277
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	3951814	3955848	5029620		Pandoravirus(50.0%)	4	NA	NA
AXS41566.1|3951814_3952510_-	orotate phosphoribosyltransferase	NA	A0A0B5IW17	Pandoravirus	26.6	2.1e-15
AXS41567.1|3952553_3953615_-	dihydroorotase	NA	NA	NA	NA	NA
AXS41568.1|3953611_3954877_-	Zn-dependent hydrolase	NA	NA	NA	NA	NA
AXS41569.1|3954903_3955848_-	dihydroorotate dehydrogenase	NA	A0A1V0SH91	Hokovirus	27.2	4.6e-13
>prophage 278
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	3986125	3986557	5029620		Cyanophage(100.0%)	1	NA	NA
AXS41596.1|3986125_3986557_-	pseudoazurin	NA	A0A127KM86	Cyanophage	36.5	5.5e-06
>prophage 279
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	3989654	3990479	5029620		Lake_Baikal_phage(100.0%)	1	NA	NA
AXS41599.1|3989654_3990479_+	CbbQ/NirQ/NorQ/GpvN family protein	NA	A0A2H4N7N3	Lake_Baikal_phage	31.7	2.0e-12
>prophage 280
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	3995395	3996919	5029620		Staphylococcus_phage(100.0%)	1	NA	NA
AXS42720.1|3995395_3996919_+	sugar ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	31.0	1.4e-16
>prophage 281
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	4008475	4009243	5029620		Bacillus_virus(100.0%)	1	NA	NA
AXS41608.1|4008475_4009243_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.4	1.1e-28
>prophage 282
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	4024438	4026817	5029620		Hokovirus(100.0%)	1	NA	NA
AXS42725.1|4024438_4026817_-	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.7	1.8e-167
>prophage 283
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	4030659	4031766	5029620		Planktothrix_phage(100.0%)	1	NA	NA
AXS41623.1|4030659_4031766_+	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	35.5	1.1e-21
>prophage 284
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	4048951	4050238	5029620		Pandoravirus(100.0%)	1	NA	NA
AXS42728.1|4048951_4050238_-	O-acetylhomoserine aminocarboxypropyltransferase	NA	A0A0B5JD48	Pandoravirus	26.6	3.3e-14
>prophage 285
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	4061547	4066590	5029620		Tupanvirus(50.0%)	3	NA	NA
AXS41645.1|4061547_4062594_-	histone deacetylase family protein	NA	A0A2K9L473	Tupanvirus	36.3	5.6e-28
AXS41646.1|4062616_4063585_-	hydroxyacid dehydrogenase	NA	NA	NA	NA	NA
AXS41647.1|4064961_4066590_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.9	3.0e-20
>prophage 286
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	4100902	4102192	5029620		Bacillus_phage(100.0%)	1	NA	NA
AXS41671.1|4100902_4102192_-	tetratricopeptide repeat protein	NA	A0A0S2SXL7	Bacillus_phage	38.8	1.5e-11
>prophage 287
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	4111024	4114392	5029620		Ralstonia_phage(50.0%)	3	NA	NA
AXS42734.1|4111024_4112410_-	homospermidine synthase	NA	B2ZXX8	Ralstonia_phage	40.8	3.0e-101
AXS41677.1|4112692_4113250_-	N-acetyltransferase	NA	NA	NA	NA	NA
AXS41678.1|4113261_4114392_-	type III PLP-dependent enzyme	NA	A0A1V0SKK0	Klosneuvirus	30.4	6.5e-30
>prophage 288
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	4133667	4134663	5029620		Bacillus_virus(100.0%)	1	NA	NA
AXS41692.1|4133667_4134663_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.8	1.6e-24
>prophage 289
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	4145868	4147623	5029620		Staphylococcus_phage(100.0%)	1	NA	NA
AXS41703.1|4145868_4147623_+	acetate--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	51.9	5.7e-142
>prophage 290
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	4154734	4155547	5029620		Bacillus_virus(100.0%)	1	NA	NA
AXS41709.1|4154734_4155547_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.5	7.2e-39
>prophage 291
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	4174901	4175768	5029620		Bacillus_virus(100.0%)	1	NA	NA
AXS41725.1|4174901_4175768_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.1	1.2e-28
>prophage 292
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	4180686	4181616	5029620	transposase	Wolbachia_phage(100.0%)	1	NA	NA
AXS41731.1|4180686_4181616_+|transposase	IS110 family transposase	transposase	Q75QL1	Wolbachia_phage	33.9	3.6e-26
>prophage 293
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	4192953	4194771	5029620		Bacillus_virus(100.0%)	1	NA	NA
AXS41743.1|4192953_4194771_-	diguanylate cyclase	NA	G3MA91	Bacillus_virus	37.5	1.4e-21
>prophage 294
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	4199195	4199891	5029620		Roseobacter_phage(100.0%)	1	NA	NA
AXS41747.1|4199195_4199891_+	DNA-binding response regulator	NA	F4YXP8	Roseobacter_phage	51.6	2.1e-15
>prophage 295
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	4232156	4235721	5029620	transposase	Bacillus_phage(50.0%)	4	NA	NA
AXS41770.1|4232156_4233065_-	RNA polymerase sigma factor RpoH	NA	S6ANS0	Bacillus_phage	26.7	2.7e-10
AXS41771.1|4233245_4234301_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
AXS41772.1|4234299_4234659_+	hypothetical protein	NA	NA	NA	NA	NA
AXS41773.1|4234791_4235721_-|transposase	IS110 family transposase	transposase	Q75QL1	Wolbachia_phage	33.9	3.6e-26
>prophage 296
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	4245798	4251931	5029620		Acanthamoeba_polyphaga_mimivirus(33.33%)	4	NA	NA
AXS41782.1|4245798_4246572_+	SDR family oxidoreductase	NA	A0A0G2Y924	Acanthamoeba_polyphaga_mimivirus	36.8	2.4e-07
AXS41783.1|4246723_4248037_+	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	34.5	5.2e-15
AXS41784.1|4248476_4249700_-	hypothetical protein	NA	NA	NA	NA	NA
AXS41785.1|4250638_4251931_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.1	2.9e-58
>prophage 297
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	4264542	4266465	5029620		Ostreococcus_tauri_virus(100.0%)	1	NA	NA
AXS41789.1|4264542_4266465_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	A9YVR1	Ostreococcus_tauri_virus	41.9	3.6e-113
>prophage 298
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	4277153	4280880	5029620		uncultured_Caudovirales_phage(50.0%)	3	NA	NA
AXS41798.1|4277153_4279274_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	35.4	1.9e-06
AXS42746.1|4279539_4279695_-	DUF3096 domain-containing protein	NA	NA	NA	NA	NA
AXS41799.1|4279836_4280880_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	31.6	1.3e-05
>prophage 299
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	4295155	4296181	5029620		Prochlorococcus_phage(100.0%)	1	NA	NA
AXS41816.1|4295155_4296181_+	fructose-bisphosphate aldolase class I	NA	A0A0K0KVJ8	Prochlorococcus_phage	47.6	2.0e-70
>prophage 300
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	4303091	4303742	5029620		Feldmannia_species_virus(100.0%)	1	NA	NA
AXS41823.1|4303091_4303742_-	response regulator	NA	B5LWN8	Feldmannia_species_virus	23.7	4.0e-08
>prophage 301
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	4308801	4314041	5029620		Bacillus_phage(50.0%)	2	NA	NA
AXS41829.1|4308801_4310625_+	ATP-binding cassette domain-containing protein	NA	W8CYL7	Bacillus_phage	30.2	1.6e-49
AXS41830.1|4311215_4314041_-	SDR family oxidoreductase	NA	A0A2H4PQU7	Staphylococcus_phage	30.1	1.5e-59
>prophage 302
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	4318696	4320022	5029620		Bacillus_phage(50.0%)	2	NA	NA
AXS41835.1|4318696_4319323_-	diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	33.5	5.0e-16
AXS41836.1|4319524_4320022_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.6	6.6e-19
>prophage 303
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	4323254	4323485	5029620		Pelagibacter_phage(100.0%)	1	NA	NA
AXS41840.1|4323254_4323485_+	30S ribosomal protein S21	NA	M1HLV7	Pelagibacter_phage	54.0	3.5e-07
>prophage 304
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	4334834	4336454	5029620		Bacillus_phage(100.0%)	1	NA	NA
AXS41849.1|4334834_4336454_-	sigma-54-dependent Fis family transcriptional regulator	NA	W8CYM9	Bacillus_phage	36.1	1.4e-09
>prophage 305
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	4339743	4340025	5029620		Sinorhizobium_phage(100.0%)	1	NA	NA
AXS41851.1|4339743_4340025_-	DUF2312 domain-containing protein	NA	Q8W6H2	Sinorhizobium_phage	71.8	4.5e-25
>prophage 306
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	4353830	4354280	5029620		uncultured_Mediterranean_phage(100.0%)	1	NA	NA
AXS41865.1|4353830_4354280_+	heat-shock protein	NA	A0A1B1IW69	uncultured_Mediterranean_phage	42.9	2.0e-27
>prophage 307
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	4383194	4384034	5029620		Staphylococcus_phage(100.0%)	1	NA	NA
AXS41884.1|4383194_4384034_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.1	1.0e-11
>prophage 308
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	4387802	4390621	5029620		Brazilian_cedratvirus(50.0%)	2	NA	NA
AXS41887.1|4387802_4388621_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	26.7	1.1e-15
AXS41888.1|4388617_4390621_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.2	2.0e-34
>prophage 309
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	4429601	4430564	5029620		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
AXS41913.1|4429601_4430564_-	2-hydroxyacid dehydrogenase	NA	M1HFV8	Paramecium_bursaria_Chlorella_virus	26.0	1.5e-14
>prophage 310
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	4442225	4443056	5029620		Bacillus_virus(100.0%)	1	NA	NA
AXS41923.1|4442225_4443056_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.2	6.9e-29
>prophage 311
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	4463838	4468178	5029620		uncultured_virus(100.0%)	2	NA	NA
AXS41941.1|4463838_4465839_+	adenylate/guanylate cyclase domain-containing protein	NA	A0A218MLZ2	uncultured_virus	32.1	8.5e-17
AXS41942.1|4465835_4468178_+	Cu(2+)-exporting ATPase	NA	A0A218MNH6	uncultured_virus	35.6	3.0e-98
>prophage 312
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	4476038	4477688	5029620		Lake_Baikal_phage(100.0%)	2	NA	NA
AXS41948.1|4476038_4477346_-	adenylate/guanylate cyclase domain-containing protein	NA	A0A2H4N7Z5	Lake_Baikal_phage	31.2	4.7e-08
AXS41949.1|4477484_4477688_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	51.9	1.2e-08
>prophage 313
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	4485397	4491446	5029620	holin	Bacillus_phage(33.33%)	6	NA	NA
AXS41955.1|4485397_4486501_-	molybdenum ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	30.9	4.3e-10
AXS41956.1|4486500_4487205_-	molybdate ABC transporter permease	NA	NA	NA	NA	NA
AXS41957.1|4487209_4488004_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXS41958.1|4488044_4488425_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXS41959.1|4488560_4489145_-	hypothetical protein	NA	A0A2K9L353	Tupanvirus	45.7	1.5e-06
AXS41960.1|4489838_4491446_-|holin	choline dehydrogenase	holin	A0A1V0S9J5	Catovirus	31.3	4.8e-63
>prophage 314
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	4503796	4504756	5029620		Bacillus_virus(100.0%)	1	NA	NA
AXS41970.1|4503796_4504756_-	CbbX protein	NA	G3MAX6	Bacillus_virus	36.0	2.1e-45
>prophage 315
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	4512140	4516151	5029620		Klosneuvirus(50.0%)	4	NA	NA
AXS41974.1|4512140_4513256_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	33.5	3.0e-35
AXS41975.1|4513500_4514418_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXS41976.1|4514433_4515204_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
AXS42766.1|4515200_4516151_-	D-2-hydroxyacid dehydrogenase family protein	NA	A0A2R8FDS8	Brazilian_cedratvirus	34.0	2.4e-25
>prophage 316
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	4522502	4527404	5029620		Bacillus_virus(33.33%)	4	NA	NA
AXS41982.1|4522502_4523600_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.9	1.8e-16
AXS41983.1|4523607_4524690_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	29.5	2.1e-09
AXS41984.1|4524795_4526397_-	glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
AXS41985.1|4526645_4527404_+	DeoR/GlpR transcriptional regulator	NA	A0A077SK06	Escherichia_phage	29.8	5.1e-23
>prophage 317
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	4600747	4601005	5029620		Rhizobium_phage(100.0%)	1	NA	NA
AXS42029.1|4600747_4601005_-	glutaredoxin 3	NA	V9QKN6	Rhizobium_phage	49.4	1.6e-16
>prophage 318
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	4604381	4612492	5029620		uncultured_Caudovirales_phage(25.0%)	7	NA	NA
AXS42776.1|4604381_4606457_+	hypothetical protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	37.4	2.0e-13
AXS42033.1|4606584_4607787_+	pyridine nucleotide-disulfide oxidoreductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.5	1.1e-06
AXS42034.1|4607815_4608595_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
AXS42777.1|4608933_4609536_+	L,D-transpeptidase	NA	NA	NA	NA	NA
AXS42035.1|4609626_4610856_-	adenylate/guanylate cyclase domain-containing protein	NA	A0A1B1IWY2	uncultured_Mediterranean_phage	29.3	1.9e-06
AXS42778.1|4610981_4611371_-	GtrA family protein	NA	NA	NA	NA	NA
AXS42036.1|4611427_4612492_-	glycosyltransferase	NA	I1TED8	Salmonella_phage	47.2	1.2e-78
>prophage 319
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	4622591	4625491	5029620		Morganella_phage(50.0%)	4	NA	NA
AXS42044.1|4622591_4622801_+	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	51.7	8.9e-10
AXS42045.1|4622896_4623457_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AXS42046.1|4623412_4624468_+	nucleoside-diphosphate sugar epimerase	NA	NA	NA	NA	NA
AXS42779.1|4624525_4625491_+	thioredoxin-disulfide reductase	NA	A0A2K9L162	Tupanvirus	45.6	8.2e-66
>prophage 320
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	4656646	4658704	5029620		Vibrio_phage(100.0%)	1	NA	NA
AXS42067.1|4656646_4658704_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	33.6	5.5e-35
>prophage 321
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	4663369	4663669	5029620		Rhodococcus_phage(100.0%)	1	NA	NA
AXS42072.1|4663369_4663669_+	addiction module antidote protein, HigA family	NA	M9MUN2	Rhodococcus_phage	50.0	2.2e-17
>prophage 322
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	4674902	4681925	5029620	transposase	Wolbachia_phage(33.33%)	6	NA	NA
AXS42083.1|4674902_4675874_-|transposase	IS110 family transposase	transposase	Q75QL1	Wolbachia_phage	33.6	4.7e-21
AXS42783.1|4676420_4678235_+	DNA helicase RecQ	NA	A0A2K9L3P7	Tupanvirus	35.2	5.1e-77
AXS42084.1|4678430_4678967_-	RNA 2',3'-cyclic phosphodiesterase	NA	NA	NA	NA	NA
AXS42085.1|4679163_4680210_-	aldo/keto reductase	NA	NA	NA	NA	NA
AXS42086.1|4680343_4680982_-	arylesterase	NA	NA	NA	NA	NA
AXS42784.1|4681193_4681925_+	ATP-binding cassette domain-containing protein	NA	A0A1V0SE00	Indivirus	28.2	7.2e-14
>prophage 323
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	4685607	4689135	5029620		uncultured_Caudovirales_phage(50.0%)	3	NA	NA
AXS42089.1|4685607_4686135_+	N-acetyltransferase family protein	NA	A0A2H4J136	uncultured_Caudovirales_phage	40.5	1.6e-23
AXS42090.1|4686156_4686594_-	DUF2794 domain-containing protein	NA	NA	NA	NA	NA
AXS42785.1|4687173_4689135_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	36.3	2.0e-111
>prophage 324
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	4703458	4703998	5029620		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
AXS42106.1|4703458_4703998_-	inorganic diphosphatase	NA	A0A2H4J8U1	uncultured_Caudovirales_phage	53.3	1.9e-48
>prophage 325
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	4707496	4708393	5029620		Rhodococcus_phage(100.0%)	1	NA	NA
AXS42109.1|4707496_4708393_-	flagellar biosynthesis protein FlgM	NA	A0A1I9SA48	Rhodococcus_phage	36.2	3.7e-36
>prophage 326
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	4714587	4716263	5029620		Staphylococcus_phage(50.0%)	2	NA	NA
AXS42790.1|4714587_4715283_-	urea ABC transporter ATP-binding subunit UrtE	NA	A0A2H4PQG7	Staphylococcus_phage	27.6	1.5e-13
AXS42117.1|4715480_4716263_-	urea ABC transporter ATP-binding protein UrtD	NA	A0A2R8FG22	Brazilian_cedratvirus	26.9	1.0e-13
>prophage 327
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	4720870	4724251	5029620		Ectocarpus_siliculosus_virus(100.0%)	1	NA	NA
AXS42120.1|4720870_4724251_+	response regulator	NA	Q8QKV7	Ectocarpus_siliculosus_virus	33.6	4.5e-26
>prophage 328
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	4740146	4741004	5029620		Cyanophage(100.0%)	1	NA	NA
AXS42130.1|4740146_4741004_+	RNA polymerase factor sigma-32	NA	C7F4F9	Cyanophage	34.1	6.2e-09
>prophage 329
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	4744332	4754031	5029620		Lake_Baikal_phage(33.33%)	4	NA	NA
AXS42792.1|4744332_4746474_-	adenylate/guanylate cyclase domain-containing protein	NA	A0A2H4N7Z5	Lake_Baikal_phage	34.2	3.4e-96
AXS42132.1|4746714_4749648_-	hypothetical protein	NA	M1ID94	Pelagibacter_phage	25.8	4.5e-06
AXS42133.1|4750383_4751832_+	type I secretion protein TolC	NA	NA	NA	NA	NA
AXS42134.1|4751844_4754031_+	type I secretion system permease/ATPase	NA	W8CYL7	Bacillus_phage	25.7	1.4e-28
>prophage 330
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	4759629	4761134	5029620		Bodo_saltans_virus(50.0%)	2	NA	NA
AXS42139.1|4759629_4760379_-	ABC transporter ATP-binding protein	NA	A0A2H4UU96	Bodo_saltans_virus	25.0	1.1e-06
AXS42140.1|4760378_4761134_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	29.4	1.9e-17
>prophage 331
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	4770387	4772124	5029620		Bacillus_virus(100.0%)	1	NA	NA
AXS42145.1|4770387_4772124_+	ATP-binding cassette domain-containing protein	NA	G3M9Y6	Bacillus_virus	37.3	2.9e-29
>prophage 332
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	4782668	4783334	5029620		Bacillus_phage(100.0%)	1	NA	NA
AXS42154.1|4782668_4783334_-	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	35.5	2.1e-28
>prophage 333
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	4791412	4792838	5029620		Staphylococcus_phage(100.0%)	2	NA	NA
AXS42160.1|4791412_4792117_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	25.4	3.2e-11
AXS42161.1|4792109_4792838_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.1	2.8e-10
>prophage 334
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	4815618	4819292	5029620		Bacillus_virus(33.33%)	4	NA	NA
AXS42183.1|4815618_4816674_+	ATP-binding cassette domain-containing protein	NA	G3M9Y6	Bacillus_virus	29.2	3.4e-17
AXS42184.1|4816670_4817645_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	1.0e-15
AXS42800.1|4817726_4818380_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
AXS42185.1|4818392_4819292_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	37.7	2.6e-29
>prophage 335
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	4825556	4826675	5029620		uncultured_virus(100.0%)	1	NA	NA
AXS42189.1|4825556_4826675_+	5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase	NA	A0A218MNE0	uncultured_virus	38.6	1.4e-64
>prophage 336
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	4839624	4840710	5029620	holin	Bacillus_virus(100.0%)	1	NA	NA
AXS42201.1|4839624_4840710_-|holin	choline ABC transporter ATP-binding protein	holin	G3M9Y6	Bacillus_virus	31.2	6.9e-21
>prophage 337
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	4846349	4852144	5029620	holin	Catovirus(33.33%)	4	NA	NA
AXS42205.1|4846349_4848011_+|holin	choline dehydrogenase	holin	A0A1V0S9M4	Catovirus	30.9	4.4e-59
AXS42206.1|4848020_4849472_-	xylulokinase	NA	NA	NA	NA	NA
AXS42207.1|4849490_4850966_-	mannitol dehydrogenase family protein	NA	E5EQS6	Micromonas_sp._RCC1109_virus	30.1	3.7e-49
AXS42208.1|4851142_4852144_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.1	1.4e-23
>prophage 338
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	4856352	4857819	5029620		Cyanophage(100.0%)	1	NA	NA
AXS42211.1|4856352_4857819_-	glucose-6-phosphate dehydrogenase	NA	H6WFS4	Cyanophage	37.7	1.9e-74
>prophage 339
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	4864026	4865796	5029620		Bacillus_phage(100.0%)	1	NA	NA
AXS42808.1|4864026_4865796_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	29.9	1.5e-49
>prophage 340
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	4893628	4897817	5029620		Planktothrix_phage(66.67%)	3	NA	NA
AXS42229.1|4893628_4895518_-	feruloyl-CoA synthase	NA	Q75ZG1	Hepacivirus	23.9	4.6e-12
AXS42230.1|4895817_4896837_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.7	1.4e-20
AXS42231.1|4896833_4897817_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.8	3.0e-15
>prophage 341
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	4901783	4907888	5029620		Bacillus_phage(33.33%)	5	NA	NA
AXS42235.1|4901783_4902662_-	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	48.8	2.6e-66
AXS42236.1|4902996_4903986_+	UDP-glucose 4-epimerase GalE	NA	A0A2K9L5H6	Tupanvirus	33.8	1.9e-41
AXS42237.1|4904511_4904874_+	hypothetical protein	NA	NA	NA	NA	NA
AXS42238.1|4904991_4905957_+	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
AXS42239.1|4905956_4907888_+	sulfate adenylyltransferase subunit CysN	NA	A0A1V0SGC3	Hokovirus	29.6	3.2e-29
>prophage 342
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	4916234	4917311	5029620	tRNA	Moraxella_phage(100.0%)	1	NA	NA
AXS42811.1|4916234_4917311_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	45.6	1.5e-71
>prophage 343
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	4935306	4940184	5029620		Cafeteria_roenbergensis_virus(50.0%)	5	NA	NA
AXS42816.1|4935306_4937058_+	DEAD/DEAH box helicase	NA	E3T5E1	Cafeteria_roenbergensis_virus	27.6	3.2e-36
AXS42817.1|4937194_4938154_+	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA	NA
AXS42259.1|4938268_4938874_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
AXS42260.1|4938949_4939447_-	cyclic nucleotide-binding domain-containing protein	NA	NA	NA	NA	NA
AXS42261.1|4939500_4940184_-	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	31.1	1.0e-22
>prophage 344
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	4943204	4946291	5029620		uncultured_phage(50.0%)	4	NA	NA
AXS42264.1|4943204_4944494_+	signal recognition particle-docking protein FtsY	NA	D6PHS7	uncultured_phage	35.5	1.1e-14
AXS42265.1|4944577_4945222_+	septation protein A	NA	NA	NA	NA	NA
AXS42266.1|4945244_4945643_-	hypothetical protein	NA	NA	NA	NA	NA
AXS42267.1|4945832_4946291_+	DUF1232 domain-containing protein	NA	A0A2I7S9Z5	Vibrio_phage	40.0	6.9e-07
>prophage 345
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	4969956	4973338	5029620		Salmonella_phage(50.0%)	3	NA	NA
AXS42283.1|4969956_4971858_-	cobaltochelatase subunit CobT	NA	J9Q7G6	Salmonella_phage	30.8	1.1e-16
AXS42284.1|4971864_4972350_-	hypothetical protein	NA	NA	NA	NA	NA
AXS42285.1|4972351_4973338_-	cobaltochelatase subunit CobS	NA	L7TKP0	Rhizobium_phage	32.2	1.1e-38
>prophage 346
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	4978143	4979091	5029620		Brevibacillus_phage(100.0%)	1	NA	NA
AXS42291.1|4978143_4979091_+	site-specific tyrosine recombinase XerD	NA	A0A0K2CP59	Brevibacillus_phage	32.1	5.4e-30
>prophage 347
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	4987156	4990365	5029620		Staphylococcus_phage(50.0%)	2	NA	NA
AXS42298.1|4987156_4988791_-	AMP-dependent synthetase	NA	A0A2H4PQU7	Staphylococcus_phage	37.4	2.7e-77
AXS42299.1|4989231_4990365_+	Fic family protein	NA	D7RWK9	Brochothrix_phage	28.4	3.1e-24
>prophage 348
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	5000744	5001950	5029620		Bacillus_virus(100.0%)	1	NA	NA
AXS42307.1|5000744_5001950_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.4	5.8e-29
>prophage 349
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	5006363	5007224	5029620		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
AXS42827.1|5006363_5007224_-	hypothetical protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	65.1	8.5e-06
>prophage 350
CP031841	Breoghania sp. L-A4 chromosome, complete genome	5029620	5019640	5021257	5029620		Prochlorococcus_phage(100.0%)	1	NA	NA
AXS42316.1|5019640_5021257_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH	NA	Q58MG4	Prochlorococcus_phage	47.5	1.8e-65
