assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003432345.1_ASM343234v1	CP031839	Staphylococcus aureus strain NX-T55 chromosome, complete genome	3	578981-579071	2	CRISPRCasFinder	no	csa3	csa3,WYL,DEDDh,cas3,DinG	Type I-A	AAGAAGCCCCTAACAACTAAAGTTG	25	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,DEDDh,cas3,DinG	NA|31aa|up_3|CP031839.1_577175_577268_-,NA|53aa|up_2|CP031839.1_577703_577862_-,NA|61aa|up_1|CP031839.1_577926_578109_+,NA|35aa|up_0|CP031839.1_578541_578646_+,NA|364aa|down_0|CP031839.1_579087_580179_-,NA|77aa|down_6|CP031839.1_585300_585531_+	NA|145aa|up_9|CP031839.1_568469_568904_-	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|711aa|up_8|CP031839.1_568915_571048_-	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|513aa|up_7|CP031839.1_571082_572621_-	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|602aa|up_6|CP031839.1_573301_575107_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|261aa|up_5|CP031839.1_575338_576121_+	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|286aa|up_4|CP031839.1_576188_577046_+	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|31aa|up_3|CP031839.1_577175_577268_-	NA	NA|53aa|up_2|CP031839.1_577703_577862_-	NA	NA|61aa|up_1|CP031839.1_577926_578109_+	NA	NA|35aa|up_0|CP031839.1_578541_578646_+	NA	NA|364aa|down_0|CP031839.1_579087_580179_-	NA	NA|391aa|down_1|CP031839.1_580385_581558_+	pfam00872, Transposase_mut, Transposase, Mutator family	NA|327aa|down_2|CP031839.1_581776_582757_-	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	csa3|107aa|down_3|CP031839.1_582758_583079_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|222aa|down_4|CP031839.1_583230_583896_+	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	NA|313aa|down_5|CP031839.1_584331_585270_+	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|77aa|down_6|CP031839.1_585300_585531_+	NA	NA|458aa|down_7|CP031839.1_586202_587576_+	pfam01878, EVE, EVE domain	NA|138aa|down_8|CP031839.1_588032_588446_+	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|148aa|down_9|CP031839.1_588645_589089_+	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]
GCA_003432345.1_ASM343234v1	CP031839	Staphylococcus aureus strain NX-T55 chromosome, complete genome	5	1112225-1112312	4	CRISPRCasFinder	no		csa3,WYL,DEDDh,cas3,DinG	Orphan	TGGGGCCCCAACACAGAAGCTGACGAAAAG	30	1	10	1112255-1112282|1112255-1112282|1112255-1112282|1112255-1112282|1112255-1112282|1112255-1112282|1112255-1112282|1112255-1112282|1112255-1112282|1112255-1112282	CP031839.1_771640-771667|CP031839.1_782333-782360|CP031839.1_1337627-1337654|CP031839.1_1556719-1556692|CP031839.1_1640528-1640501|CP031839.1_1742515-1742542|CP031839.1_1860939-1860912|CP031839.1_1944307-1944334|CP031839.1_1951691-1951718|CP031839.1_2413714-2413687	NA	1	1	Orphan	csa3,WYL,DEDDh,cas3,DinG	NA,NA	NA|190aa|up_9|CP031839.1_1102889_1103459_+	TIGR00482, Probable_nicotinate-nucleotide_adenylyltransferase, nicotinate (nicotinamide) nucleotide adenylyltransferase	NA|195aa|up_8|CP031839.1_1103448_1104033_+	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]	NA|118aa|up_7|CP031839.1_1104033_1104387_+	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown]	NA|239aa|up_6|CP031839.1_1104389_1105106_+	pfam13649, Methyltransf_25, Methyltransferase domain	NA|229aa|up_5|CP031839.1_1105145_1105832_+	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair]	NA|154aa|up_4|CP031839.1_1105923_1106385_+	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2	NA|716aa|up_3|CP031839.1_1106443_1108591_+	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]	NA|325aa|up_2|CP031839.1_1108647_1109622_+	PRK05574, holA, DNA polymerase III subunit delta; Reviewed	NA|84aa|up_1|CP031839.1_1109666_1109918_-	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed	NA|608aa|up_0|CP031839.1_1110263_1112087_+	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|375aa|down_0|CP031839.1_1112649_1113774_+	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|326aa|down_1|CP031839.1_1113874_1114852_+	TIGR00331, Heat-inducible_transcription_repressor_HrcA, heat shock gene repressor HrcA	NA|209aa|down_2|CP031839.1_1114883_1115510_+	PRK14140, PRK14140, heat shock protein GrpE; Provisional	NA|611aa|down_3|CP031839.1_1115578_1117411_+	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|380aa|down_4|CP031839.1_1117546_1118686_+	PRK14280, PRK14280, molecular chaperone DnaJ	NA|313aa|down_5|CP031839.1_1118689_1119628_+	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|251aa|down_6|CP031839.1_1119629_1120382_+	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown]	NA|449aa|down_7|CP031839.1_1120388_1121735_+	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|59aa|down_8|CP031839.1_1122027_1122204_+	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|228aa|down_9|CP031839.1_1122447_1123131_+	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
GCA_003432345.1_ASM343234v1	CP031839	Staphylococcus aureus strain NX-T55 chromosome, complete genome	6	2115576-2115669	5	CRISPRCasFinder	no		csa3,WYL,DEDDh,cas3,DinG	Orphan	GGCTTTTATGCAGTTGCTGCACAAACAA	28	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,DEDDh,cas3,DinG	NA|239aa|up_5|CP031839.1_2110404_2111121_-,NA|169aa|up_4|CP031839.1_2111282_2111789_-,NA	NA|75aa|up_9|CP031839.1_2106527_2106752_+	pfam11148, DUF2922, Protein of unknown function (DUF2922)	NA|310aa|up_8|CP031839.1_2106945_2107875_+	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]	NA|125aa|up_7|CP031839.1_2108822_2109197_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|263aa|up_6|CP031839.1_2109447_2110236_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|239aa|up_5|CP031839.1_2110404_2111121_-	NA	NA|169aa|up_4|CP031839.1_2111282_2111789_-	NA	NA|267aa|up_3|CP031839.1_2111924_2112725_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|240aa|up_2|CP031839.1_2112708_2113428_-	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|317aa|up_1|CP031839.1_2113482_2114433_-	pfam01032, FecCD, FecCD transport family	NA|276aa|up_0|CP031839.1_2114580_2115408_-	cd01143, YvrC, Periplasmic binding protein YvrC	NA|212aa|down_0|CP031839.1_2115784_2116420_-	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|554aa|down_1|CP031839.1_2116689_2118351_-	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|128aa|down_2|CP031839.1_2118347_2118731_-	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|337aa|down_3|CP031839.1_2119039_2120050_-	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|174aa|down_4|CP031839.1_2120548_2121070_-	pfam08741, YwhD, YwhD family	NA|432aa|down_5|CP031839.1_2121097_2122393_-	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|159aa|down_6|CP031839.1_2122432_2122909_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|179aa|down_7|CP031839.1_2123077_2123614_-	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|313aa|down_8|CP031839.1_2123824_2124763_-	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|209aa|down_9|CP031839.1_2125032_2125659_-	pfam04276, DUF443, Protein of unknown function (DUF443)
