The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP031839	Staphylococcus aureus strain NX-T55 chromosome, complete genome	2839540	12786	57007	2839540	tRNA,transposase,protease	Staphylococcus_phage(28.57%)	42	NA	NA
AXS25764.1|12786_14073_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	51.2	2.7e-88
AXS25765.1|14724_15420_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AXS25766.1|15416_15746_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
AXS25767.1|16107_17076_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
AXS25768.1|17368_18307_+	DUF2232 domain-containing protein	NA	NA	NA	NA	NA
AXS25769.1|18321_20289_+	DHH family phosphoesterase	NA	NA	NA	NA	NA
AXS25770.1|20285_20732_+	50S ribosomal protein L9	NA	NA	NA	NA	NA
AXS25771.1|20763_22164_+	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	48.1	5.4e-111
AXS25772.1|22213_22441_-	hypothetical protein	NA	NA	NA	NA	NA
AXS25773.1|22441_23725_+	adenylosuccinate synthetase	NA	L7Y4J5	Megavirus	34.6	1.8e-68
AXS25774.1|24920_25622_+	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	39.2	3.5e-42
AXS25775.1|25634_27461_+	cell wall metabolism sensor histidine kinase WalK	NA	W8CYF6	Bacillus_phage	31.3	1.6e-30
AXS25776.1|27453_28788_+	hypothetical protein	NA	NA	NA	NA	NA
AXS25777.1|28788_29577_+	hypothetical protein	NA	NA	NA	NA	NA
AXS25778.1|29972_30773_+	MBL fold metallo-hydrolase	NA	A0A0C5AJ83	Bacteriophage	35.9	1.0e-37
AXS25779.1|30999_33318_+	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA	NA
AXS25780.1|33492_33687_-	hypothetical protein	NA	NA	NA	NA	NA
AXS25781.1|33685_34165_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
AXS28422.1|35289_35520_+	DUF2975 domain-containing protein	NA	NA	NA	NA	NA
AXS25782.1|35527_35734_+	transcriptional regulator	NA	NA	NA	NA	NA
AXS25783.1|36082_37186_+	DUF418 domain-containing protein	NA	NA	NA	NA	NA
AXS25784.1|37205_37934_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AXS25785.1|38133_39228_+|transposase	IS30 family transposase	transposase	H7BWC8	unidentified_phage	33.9	6.9e-37
AXS25786.1|40515_40956_+	hypothetical protein	NA	NA	NA	NA	NA
AXS25787.1|41057_41279_+|transposase	transposase	transposase	NA	NA	NA	NA
AXS25788.1|41262_41646_+	hypothetical protein	NA	A0A0P0I4A4	Acinetobacter_phage	34.7	5.2e-16
AXS25789.1|41664_41766_+	hypothetical protein	NA	NA	NA	NA	NA
AXS25790.1|41809_42211_-	hypothetical protein	NA	NA	NA	NA	NA
AXS25791.1|44806_45901_-|transposase	IS30 family transposase	transposase	H7BWC8	unidentified_phage	33.9	6.9e-37
AXS25792.1|46100_46829_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AXS25793.1|46848_46944_-	DUF418 domain-containing protein	NA	NA	NA	NA	NA
AXS25794.1|46967_47642_-|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	98.2	4.4e-127
AXS25795.1|47886_49896_+	PBP2a family beta-lactam-resistant peptidoglycan transpeptidase MecA	NA	NA	NA	NA	NA
AXS25796.1|49941_50370_-	MaoC family dehydratase	NA	NA	NA	NA	NA
AXS25797.1|50466_51210_-	glycerophosphoryl diester phosphodiesterase	NA	NA	NA	NA	NA
AXS25798.1|51838_52069_-	hypothetical protein	NA	NA	NA	NA	NA
AXS25799.1|52167_52557_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
AXS25800.1|52592_53267_+|transposase	IS6 family transposase IS431mec	transposase	A0A0N9RU54	Staphylococcus_phage	99.1	2.6e-127
AXS25801.1|53298_53538_-	hypothetical protein	NA	NA	NA	NA	NA
AXS25802.1|54358_55033_-|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	98.2	4.4e-127
AXS25803.1|55100_55808_+	site-specific DNA-methyltransferase	NA	Q1MVP0	Enterobacteria_phage	35.5	9.6e-32
AXS25804.1|55834_57007_-|transposase	IS256 family transposase IS256	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
>prophage 2
CP031839	Staphylococcus aureus strain NX-T55 chromosome, complete genome	2839540	703452	757084	2839540	protease,transposase,terminase	Staphylococcus_phage(46.67%)	52	NA	NA
AXS26427.1|703452_704196_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AXS26428.1|704370_704655_+	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
AXS26429.1|704730_706347_+	molecular chaperone GroEL	NA	A0A240F779	uncultured_virus	54.7	3.4e-157
AXS26430.1|707048_707261_+	pathogenicity island family protein	NA	Q4ZE86	Staphylococcus_phage	74.3	1.1e-23
AXS26431.1|707257_707848_+|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	94.7	1.2e-96
AXS28449.1|708164_708542_+	hypothetical protein	NA	NA	NA	NA	NA
AXS26432.1|708706_709150_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AXS26433.1|710003_711311_-	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
AXS26434.1|711471_712383_+	iron-hydroxamate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXS26435.1|712444_713236_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AXS26436.1|713660_714884_-	ArgE/DapE family deacylase	NA	NA	NA	NA	NA
AXS26437.1|715318_716374_+	bi-component leukocidin LukGH subunit H	NA	A0A2I6PDF3	Staphylococcus_phage	32.1	1.3e-35
AXS26438.1|716395_717451_+	bi-component leukocidin LukGH subunit G	NA	A0A1X9IGW5	Staphylococcus_phage	30.6	9.0e-26
AXS26439.1|717649_718642_-	sphingomyelin phosphodiesterase	NA	A0A1P8L6H7	Staphylococcus_phage	99.6	2.4e-161
AXS26440.1|719030_720779_+	MAP domain-containing protein	NA	NA	NA	NA	NA
AXS26441.1|720789_721080_+	MAP domain-containing protein	NA	NA	NA	NA	NA
AXS26442.1|721403_722690_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
AXS26443.1|722889_722988_+	hypothetical protein	NA	NA	NA	NA	NA
AXS26444.1|723230_723407_+	hypothetical protein	NA	NA	NA	NA	NA
AXS26445.1|723665_724046_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AXS26446.1|724042_724939_+	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	1.1e-16
AXS26447.1|724939_725620_+	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
AXS26448.1|725616_726489_+	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	35.2	6.1e-28
AXS26449.1|726488_727229_+	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA	NA
AXS26450.1|727294_727858_-	thioredoxin family protein	NA	NA	NA	NA	NA
AXS26451.1|727978_728503_+	hypothetical protein	NA	NA	NA	NA	NA
AXS26452.1|728562_729120_+	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
AXS26453.1|729116_729959_+	hypothetical protein	NA	NA	NA	NA	NA
AXS26454.1|730015_731056_-	linear amide C-N hydrolase	NA	NA	NA	NA	NA
AXS26455.1|731506_731680_+	hypothetical protein	NA	NA	NA	NA	NA
AXS26456.1|732702_733854_+|transposase	transposase	transposase	P97010	Streptococcus_pyogenes_phage	31.6	1.8e-11
AXS28450.1|733892_735920_+|transposase	transposase	transposase	NA	NA	NA	NA
AXS26457.1|735928_736294_+|transposase	transposase	transposase	NA	NA	NA	NA
AXS26458.1|738435_739281_-	penicillin-hydrolyzing class A beta-lactamase BlaZ	NA	A0A1B0VBP7	Salmonella_phage	33.9	4.4e-31
AXS26459.1|739387_741145_+	beta-lactam sensor/signal transducer BlaR1	NA	NA	NA	NA	NA
AXS26460.1|741134_741515_+	penicillinase repressor BlaI	NA	NA	NA	NA	NA
AXS26461.1|741973_743002_+	hypothetical protein	NA	NA	NA	NA	NA
AXS26462.1|743121_744501_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
AXS26463.1|744552_744726_+	hypothetical protein	NA	NA	NA	NA	NA
AXS26464.1|744918_745848_-	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
AXS26465.1|745900_746461_-	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
AXS26466.1|746832_747930_+	pectate lyase	NA	U5PWM6	Bacillus_phage	34.9	2.5e-47
AXS26467.1|748133_749696_+	SLC13 family permease	NA	NA	NA	NA	NA
AXS26468.1|749706_749814_-	hypothetical protein	NA	NA	NA	NA	NA
AXS26469.1|749885_750680_-	prephenate dehydratase	NA	NA	NA	NA	NA
AXS26470.1|750699_751776_-	nitric oxide synthase oxygenase	NA	NA	NA	NA	NA
AXS26471.1|751959_753429_+	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	45.1	3.5e-108
AXS26472.1|753421_754243_+	NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	2.3e-69
AXS26473.1|754513_755116_+	DUF2179 domain-containing protein	NA	NA	NA	NA	NA
AXS26474.1|755096_755270_+	NETI motif-containing protein	NA	NA	NA	NA	NA
AXS26475.1|755560_755887_-	staphostatin A	NA	NA	NA	NA	NA
AXS26476.1|755917_757084_-|protease	cysteine protease staphopain A	protease	NA	NA	NA	NA
>prophage 3
CP031839	Staphylococcus aureus strain NX-T55 chromosome, complete genome	2839540	873948	908452	2839540	protease	Staphylococcus_phage(90.62%)	41	NA	NA
AXS26581.1|873948_874701_-	hypothetical protein	NA	A0A097PAT7	Streptococcus_pyogenes_phage	47.2	4.4e-51
AXS26582.1|874727_875498_-	exotoxin	NA	A0EX09	Staphylococcus_phage	33.5	4.3e-25
AXS26583.1|875497_876124_-	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	93.8	3.9e-93
AXS26584.1|876197_877193_-	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	97.2	4.2e-73
AXS26585.1|877273_877924_-	calcium-binding protein	NA	A0A2H4PQM8	Staphylococcus_phage	99.1	3.0e-56
AXS28454.1|878227_878683_+	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	98.6	1.2e-78
AXS26586.1|878841_880320_+	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	100.0	1.5e-289
AXS26587.1|880324_881326_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	98.2	9.7e-187
AXS26588.1|881322_881580_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	98.8	3.6e-45
AXS26589.1|881645_882119_+	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	96.8	3.0e-82
AXS28455.1|882123_882870_+	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.8	2.9e-143
AXS26590.1|883247_884840_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
AXS26591.1|885211_886405_+	S-adenosylmethionine synthase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
AXS26592.1|886529_887438_+	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	100.0	3.4e-138
AXS26593.1|887649_888423_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	99.2	4.1e-145
AXS26594.1|888494_888674_-	hypothetical protein	NA	NA	NA	NA	NA
AXS26595.1|888865_889219_-	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	100.0	2.6e-22
AXS26596.1|889215_889581_-	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
AXS26597.1|889836_890139_-	hypothetical protein	NA	NA	NA	NA	NA
AXS26598.1|890398_891112_+	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
AXS26599.1|891551_892187_-|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
AXS26600.1|892482_892926_+	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	98.0	3.5e-56
AXS26601.1|892912_893356_-	competence protein ComK	NA	NA	NA	NA	NA
AXS26602.1|893468_893939_-	RNA polymerase sigma factor SigS	NA	A0A2H4PQT5	Staphylococcus_phage	99.4	1.0e-82
AXS26603.1|894137_894362_+	hypothetical protein	NA	NA	NA	NA	NA
AXS26604.1|894637_895492_+	autolysin	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
AXS26605.1|895786_896182_-	protein ArsC	NA	A0A2H4PQT9	Staphylococcus_phage	100.0	6.3e-73
AXS26606.1|896199_897492_-	arsenical efflux pump membrane protein ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	5.0e-228
AXS26607.1|897491_897806_-	ArsR family transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	98.1	9.8e-53
AXS26608.1|898328_899831_+	pyridine nucleotide-disulfide oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
AXS28456.1|900323_901355_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.8	2.0e-195
AXS26609.1|901361_901994_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	100.0	3.4e-113
AXS26610.1|902004_903186_+	riboflavin biosynthesis protein RibBA	NA	A0A2H4PQS2	Staphylococcus_phage	100.0	1.7e-227
AXS26611.1|903198_903663_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	100.0	4.5e-70
AXS26612.1|903784_904786_-	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	100.0	3.1e-185
AXS28457.1|904694_904886_+	hypothetical protein	NA	NA	NA	NA	NA
AXS26613.1|904897_905017_+	hypothetical protein	NA	NA	NA	NA	NA
AXS26614.1|905019_905847_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AXS26615.1|906417_906819_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AXS26616.1|906938_907502_-	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
AXS26617.1|907498_908452_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
>prophage 4
CP031839	Staphylococcus aureus strain NX-T55 chromosome, complete genome	2839540	1038557	1097474	2839540	protease,tRNA,transposase	uncultured_Mediterranean_phage(16.67%)	57	NA	NA
AXS26724.1|1038557_1039643_+|transposase	transposase	transposase	A0A0A8WIF9	Clostridium_phage	25.7	2.9e-11
AXS28463.1|1039645_1041559_+|transposase	transposase	transposase	NA	NA	NA	NA
AXS26725.1|1041560_1041926_+|transposase	transposase	transposase	NA	NA	NA	NA
AXS26726.1|1042208_1042625_-	flavodoxin family protein	NA	NA	NA	NA	NA
AXS26727.1|1042802_1044230_-	chloramphenicol/florfenicol efflux MFS transporter FexA	NA	NA	NA	NA	NA
AXS26728.1|1045285_1045570_+	hypothetical protein	NA	NA	NA	NA	NA
AXS26729.1|1045686_1045884_-	hypothetical protein	NA	NA	NA	NA	NA
AXS26730.1|1046043_1046517_+	DUF4930 family protein	NA	NA	NA	NA	NA
AXS26731.1|1046590_1046710_+	hypothetical protein	NA	NA	NA	NA	NA
AXS26732.1|1046908_1047751_+	rod shape-determining protein MreC	NA	NA	NA	NA	NA
AXS26733.1|1047750_1048281_+	rod shape-determining protein MreD	NA	NA	NA	NA	NA
AXS26734.1|1048516_1048825_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
AXS26735.1|1048830_1049151_+|protease	ribosomal-processing cysteine protease Prp	protease	NA	NA	NA	NA
AXS26736.1|1049162_1049447_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
AXS26737.1|1049930_1051223_+	GTPase ObgE	NA	NA	NA	NA	NA
AXS26738.1|1051235_1051691_+	ACT domain-containing protein	NA	NA	NA	NA	NA
AXS26739.1|1051704_1052307_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
AXS26740.1|1052338_1053343_+	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
AXS26741.1|1053344_1054370_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
AXS26742.1|1054392_1055532_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
AXS26743.1|1055550_1055811_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
AXS26744.1|1056085_1058365_+	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
AXS26745.1|1058567_1060841_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.1	1.1e-63
AXS26746.1|1060862_1061381_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
AXS26747.1|1061808_1063998_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A2I2L310	Orpheovirus	37.7	6.9e-12
AXS26748.1|1064009_1064462_+|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	tRNA	NA	NA	NA	NA
AXS26749.1|1064458_1065334_+	cell wall amidase	NA	A0A0N9SGH1	Paenibacillus_phage	33.7	4.7e-12
AXS26750.1|1065794_1067057_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
AXS26751.1|1067072_1068839_+|tRNA	aspartate--tRNA ligase	tRNA	A0A2K9L0E9	Tupanvirus	27.3	1.3e-16
AXS26752.1|1069171_1069300_+	hypothetical protein	NA	NA	NA	NA	NA
AXS26753.1|1069299_1070073_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
AXS26754.1|1070233_1071508_-	replication-associated recombination protein A	NA	A0A127AWE7	Bacillus_phage	50.7	1.4e-105
AXS26755.1|1071592_1072015_+	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
AXS26756.1|1072114_1072297_+	CsbD family protein	NA	NA	NA	NA	NA
AXS26757.1|1072336_1072483_+	hypothetical protein	NA	NA	NA	NA	NA
AXS26758.1|1072719_1073733_-	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA	NA
AXS26759.1|1074044_1075187_+	cysteine desulfurase	NA	A0A1X7QGF3	Faustovirus	29.3	8.3e-33
AXS26760.1|1075187_1076306_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
AXS26761.1|1076940_1077609_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
AXS26762.1|1077610_1080088_+	ATP-dependent RecD-like DNA helicase	NA	A0A0K2FLP8	Brevibacillus_phage	29.0	1.1e-66
AXS26763.1|1080430_1083061_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	34.4	3.2e-64
AXS26764.1|1083123_1083384_+	IreB family regulatory phosphoprotein	NA	NA	NA	NA	NA
AXS26765.1|1083387_1083816_+	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
AXS26766.1|1083830_1084139_+	DUF1292 domain-containing protein	NA	NA	NA	NA	NA
AXS26767.1|1084423_1085062_+	O-methyltransferase	NA	A0A2P1JQT7	Mycobacterium_phage	28.8	1.6e-09
AXS26768.1|1085064_1085988_+	U32 family peptidase	NA	NA	NA	NA	NA
AXS26769.1|1085999_1087268_+|protease	collagenase-like protease	protease	Q6DW11	Phage_TP	31.7	4.0e-36
AXS26770.1|1087267_1087891_+	uridine kinase	NA	A0A1V0SAA3	Catovirus	41.1	2.8e-35
AXS26771.1|1087918_1088395_+	transcription elongation factor GreA	NA	NA	NA	NA	NA
AXS26772.1|1088720_1089455_+	5-oxoprolinase subunit PxpB	NA	NA	NA	NA	NA
AXS26773.1|1089444_1090455_+	biotin-dependent carboxyltransferase family protein	NA	NA	NA	NA	NA
AXS26774.1|1090456_1090906_+	acetyl-CoA carboxylase biotin carboxyl carrier protein subunit	NA	NA	NA	NA	NA
AXS26775.1|1090919_1092281_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
AXS26776.1|1092280_1093033_+	LamB/YcsF family protein	NA	NA	NA	NA	NA
AXS26777.1|1093044_1094274_+	divalent metal cation transporter	NA	NA	NA	NA	NA
AXS26778.1|1095534_1095927_-	NimC/NimA family protein	NA	NA	NA	NA	NA
AXS26779.1|1096211_1097474_-|transposase	IS1380-like element ISEnca1 family transposase	transposase	A0A1B0VDR3	Salmonella_phage	92.9	1.2e-35
>prophage 5
CP031839	Staphylococcus aureus strain NX-T55 chromosome, complete genome	2839540	1132396	1140726	2839540	tRNA	Caulobacter_phage(16.67%)	7	NA	NA
AXS26817.1|1132396_1134214_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	3.6e-54
AXS26818.1|1134437_1135544_+	RNA polymerase sigma factor SigA	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
AXS26819.1|1135674_1136352_+|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
AXS26820.1|1136354_1137455_+	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	29.6	5.2e-08
AXS26821.1|1137568_1138915_+	DEAD/DEAH box family ATP-dependent RNA helicase	NA	A0A1V0SIR5	Klosneuvirus	34.0	2.4e-55
AXS26822.1|1138924_1139815_+	endonuclease	NA	A0A2H4UU70	Bodo_saltans_virus	36.0	3.4e-26
AXS26823.1|1139940_1140726_+	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	4.7e-19
>prophage 6
CP031839	Staphylococcus aureus strain NX-T55 chromosome, complete genome	2839540	1197628	1251885	2839540	capsid,terminase,head,portal,tail,holin,integrase,protease	Staphylococcus_phage(82.28%)	83	1203207:1203235	1249358:1249386
AXS26890.1|1197628_1198354_+	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	43.0	3.5e-45
AXS26891.1|1198334_1200086_+	two-component sensor histidine kinase	NA	A0A1V0SGX0	Hokovirus	33.2	2.2e-21
AXS26892.1|1200329_1201256_+	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
AXS26893.1|1201248_1203276_+	hypothetical protein	NA	B5WZK7	Staphylococcus_phage	100.0	1.6e-116
1203207:1203235	attL	ACCATCACATTATGATGATATGTTTATTT	NA	NA	NA	NA
AXS26894.1|1203318_1204524_-|integrase	site-specific integrase	integrase	A0A2I6PEN0	Staphylococcus_phage	100.0	7.7e-223
AXS26895.1|1204649_1205264_+	ATPase	NA	A7TW88	Staphylococcus_phage	100.0	7.9e-107
AXS26896.1|1205260_1205407_-	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	93.8	1.7e-15
AXS26897.1|1205721_1206642_-	exonuclease	NA	B5WZL1	Staphylococcus_phage	99.7	7.3e-173
AXS26898.1|1206657_1207272_-	helix-turn-helix domain-containing protein	NA	B5WZL2	Staphylococcus_phage	100.0	9.0e-111
AXS26899.1|1207443_1207671_+	BetR domain protein	NA	B5WZL3	Staphylococcus_phage	100.0	3.3e-34
AXS26900.1|1207696_1208473_+	phage antirepressor	NA	M1RZB2	Staphylococcus_phage	99.6	4.3e-142
AXS26901.1|1208488_1208707_+	hypothetical protein	NA	B5WZL5	Staphylococcus_phage	100.0	7.8e-33
AXS26902.1|1208756_1208900_+	hypothetical protein	NA	W5R8I6	Staphylococcus_phage	100.0	2.5e-16
AXS26903.1|1208889_1209180_-	uracil-DNA glycosylase	NA	D2JGJ1	Staphylococcus_phage	92.6	5.3e-29
AXS26904.1|1209249_1209447_+	hypothetical protein	NA	A7TWF5	Staphylococcus_phage	100.0	4.6e-24
AXS26905.1|1209433_1209814_-	DUF2513 domain-containing protein	NA	Q4ZCQ5	Staphylococcus_virus	100.0	5.8e-68
AXS26906.1|1209880_1210126_+	DUF2829 domain-containing protein	NA	A0A2I6PF15	Staphylococcus_phage	100.0	5.1e-41
AXS26907.1|1210094_1210460_-	hypothetical protein	NA	A0A2I6PF07	Staphylococcus_phage	100.0	2.4e-63
AXS26908.1|1210514_1210730_+	hypothetical protein	NA	A0A2I6PF01	Staphylococcus_phage	100.0	1.9e-31
AXS26909.1|1210756_1211020_+	helix-turn-helix domain-containing protein	NA	A0A2I6PEL8	Staphylococcus_phage	98.9	7.4e-46
AXS26910.1|1211032_1211194_+	DUF1270 family protein	NA	A9CR58	Staphylococcus_phage	98.1	1.1e-20
AXS26911.1|1211288_1211591_+	DUF2482 family protein	NA	A0A0F6N3N3	Staphylococcus_phage	97.0	7.7e-47
AXS26912.1|1211595_1211856_+	DUF1108 family protein	NA	C8CGY6	Staphylococcus_phage	98.8	2.0e-43
AXS26913.1|1211865_1212087_+	DUF2483 domain-containing protein	NA	A7TWM6	Staphylococcus_phage	100.0	3.2e-34
AXS26914.1|1212079_1212703_+	DUF1071 domain-containing protein	NA	A0A2H4PQQ6	Staphylococcus_phage	99.5	4.0e-114
AXS26915.1|1212702_1213128_+	single-stranded DNA-binding protein	NA	B7T0A5	Staphylococcus_virus	86.5	2.0e-56
AXS26916.1|1213138_1213690_+	HNH endonuclease	NA	A0A2H4PQR4	Staphylococcus_phage	100.0	1.6e-106
AXS26917.1|1213690_1214365_+	hypothetical protein	NA	C8CGZ0	Staphylococcus_phage	97.3	3.8e-126
AXS26918.1|1214357_1215110_+	DnaD domain protein	NA	C8CGZ1	Staphylococcus_phage	87.3	5.5e-118
AXS26919.1|1215109_1215466_+	hypothetical protein	NA	B7T0A8	Staphylococcus_virus	97.5	2.2e-61
AXS26920.1|1215462_1216704_+	damage-inducible protein	NA	C8CGZ3	Staphylococcus_phage	99.5	7.4e-229
AXS26921.1|1216700_1216916_+	hypothetical protein	NA	Q4ZBU5	Staphylococcus_virus	95.8	1.2e-33
AXS26922.1|1216918_1217140_+	DUF3269 family protein	NA	Q9G021	Staphylococcus_phage	100.0	1.3e-35
AXS26923.1|1217149_1217557_+	RusA family crossover junction endodeoxyribonuclease	NA	A9CR74	Staphylococcus_phage	98.5	8.4e-73
AXS26924.1|1217556_1217742_+	DUF3113 family protein	NA	M9NSS9	Staphylococcus_phage	95.1	1.0e-25
AXS26925.1|1217742_1218105_+	hypothetical protein	NA	B7T0B4	Staphylococcus_virus	75.8	2.1e-46
AXS26926.1|1218104_1218359_+	DUF3310 domain-containing protein	NA	A7TWG9	Staphylococcus_phage	96.4	1.8e-41
AXS26927.1|1218358_1218607_+	hypothetical protein	NA	A0A2K9VBX5	Staphylococcus_phage	100.0	1.2e-40
AXS26928.1|1218620_1218827_+	hypothetical protein	NA	A0A2K9VBT9	Staphylococcus_phage	100.0	3.0e-34
AXS26929.1|1218829_1219231_+	hypothetical protein	NA	A0A2I6PDC0	Staphylococcus_phage	94.7	2.1e-68
AXS26930.1|1219227_1219575_+	hypothetical protein	NA	D2JGL4	Staphylococcus_phage	100.0	5.9e-59
AXS26931.1|1219571_1219880_+	hypothetical protein	NA	Q6R826	Staphylococcus_virus	96.0	4.2e-48
AXS26932.1|1219872_1220127_+	DUF1024 family protein	NA	A7TWH5	Staphylococcus_phage	91.7	1.8e-36
AXS26933.1|1220089_1220284_+	hypothetical protein	NA	M1SVE4	Staphylococcus_phage	95.1	5.9e-24
AXS26934.1|1220276_1220771_+	dUTPase	NA	I1W653	Staphylococcus_phage	66.9	2.5e-55
AXS26935.1|1220823_1221066_+	hypothetical protein	NA	A0A1W6JQI1	Staphylococcus_phage	71.8	6.6e-25
AXS26936.1|1221062_1221269_+	DUF1381 domain-containing protein	NA	U3PD04	Staphylococcus_phage	94.7	1.9e-12
AXS26937.1|1221265_1221418_+	transcriptional regulator	NA	A0A2I6PEM5	Staphylococcus_phage	100.0	2.0e-19
AXS26938.1|1221485_1221686_+	DUF1514 domain-containing protein	NA	A0A2I6PEP5	Staphylococcus_phage	100.0	4.9e-26
AXS26939.1|1222395_1222833_+	transcriptional regulator	NA	A0A2I6PDN2	Staphylococcus_phage	97.9	1.1e-75
AXS26940.1|1222989_1223304_+	HNH endonuclease	NA	Q4ZCU3	Staphylococcus_virus	97.1	9.4e-56
AXS26941.1|1223431_1223737_+|terminase	phage terminase small subunit P27 family	terminase	A0A2I6PEQ6	Staphylococcus_phage	100.0	2.9e-49
AXS26942.1|1223726_1225418_+|terminase	terminase large subunit	terminase	Q9B0E3	Staphylococcus_virus	99.1	0.0e+00
AXS26943.1|1225422_1226661_+|portal	phage portal protein	portal	A0A2I6PF26	Staphylococcus_phage	99.8	1.5e-234
AXS26944.1|1226644_1227418_+|protease	Clp protease ClpP	protease	A0A2I6PEQ7	Staphylococcus_phage	100.0	2.4e-137
AXS26945.1|1227429_1228593_+|capsid	phage major capsid protein	capsid	A0A2I6PE62	Staphylococcus_phage	100.0	3.6e-217
AXS26946.1|1228661_1228940_+|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2I6PEQ1	Staphylococcus_phage	98.9	4.6e-46
AXS26947.1|1228951_1229284_+	hypothetical protein	NA	A0A2I6PDD6	Staphylococcus_phage	99.1	3.1e-57
AXS26948.1|1229280_1229682_+	hypothetical protein	NA	A0A2I6PDD3	Staphylococcus_phage	97.7	5.2e-67
AXS26949.1|1229682_1230078_+	DUF3168 domain-containing protein	NA	A0A0K1LKC0	Staphylococcus_phage	97.7	1.7e-65
AXS26950.1|1230112_1230754_+|tail	phage tail protein	tail	A0A2I6PEP6	Staphylococcus_phage	100.0	5.9e-121
AXS26951.1|1230845_1231301_+	Ig domain-containing protein	NA	A0A2I6PF45	Staphylococcus_phage	100.0	1.3e-77
AXS26952.1|1231358_1231709_+	hypothetical protein	NA	A0A2I6PEQ2	Staphylococcus_phage	99.1	3.1e-55
AXS26953.1|1231750_1231909_+	hypothetical protein	NA	A0A2I6PES8	Staphylococcus_phage	100.0	1.2e-19
AXS26954.1|1231922_1238123_+|tail	phage tail tape measure protein	tail	A0A1X9IGU9	Staphylococcus_phage	99.9	0.0e+00
AXS26955.1|1238122_1238947_+|tail	phage tail family protein	tail	A0A2I6PER3	Staphylococcus_phage	100.0	4.1e-159
AXS26956.1|1238955_1240539_+	peptidase	NA	A0A2I6PEQ5	Staphylococcus_phage	100.0	9.3e-309
AXS26957.1|1240538_1240829_+	hypothetical protein	NA	A0A2I6PF46	Staphylococcus_phage	100.0	2.1e-49
AXS26958.1|1240844_1242755_+	hypothetical protein	NA	A0A2I6PF35	Staphylococcus_phage	100.0	0.0e+00
AXS26959.1|1242754_1244221_+	DUF2479 domain-containing protein	NA	A0A2I6PDE3	Staphylococcus_phage	98.6	7.1e-271
AXS26960.1|1244220_1244610_+	DUF2977 domain-containing protein	NA	Q4ZCZ7	Staphylococcus_virus	95.3	5.4e-61
AXS26961.1|1244602_1244767_+	XkdX family protein	NA	M9QX31	Staphylococcus_phage	98.1	1.9e-23
AXS26962.1|1244812_1245112_+	DUF2951 family protein	NA	M9QRV2	Staphylococcus_phage	100.0	2.6e-31
AXS26963.1|1245247_1245685_+|holin	phage holin	holin	M9QTA6	Staphylococcus_phage	97.9	3.8e-71
AXS26964.1|1245665_1247111_+	CHAP domain-containing protein	NA	Q4ZB16	Staphylococcus_virus	96.9	1.7e-288
AXS26965.1|1247185_1247368_+	hypothetical protein	NA	NA	NA	NA	NA
AXS26966.1|1248013_1248193_+	hypothetical protein	NA	M9QYR8	Staphylococcus_phage	100.0	4.1e-24
AXS26967.1|1248214_1248742_+	DUF4065 domain-containing protein	NA	M9QX37	Staphylococcus_phage	100.0	3.4e-98
AXS26968.1|1248713_1249130_+	hypothetical protein	NA	M9QRV7	Staphylococcus_phage	100.0	6.4e-76
AXS26969.1|1249346_1249562_+	hypothetical protein	NA	A0ZS61	Staphylococcus_virus	100.0	2.0e-25
1249358:1249386	attR	ACCATCACATTATGATGATATGTTTATTT	NA	NA	NA	NA
AXS26970.1|1249651_1250584_+	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
AXS26971.1|1250985_1251531_+	ECF transporter S component	NA	NA	NA	NA	NA
AXS26972.1|1251636_1251885_-	ferredoxin	NA	A0A127AYY7	Bacillus_phage	48.0	8.3e-15
>prophage 7
CP031839	Staphylococcus aureus strain NX-T55 chromosome, complete genome	2839540	1460965	1476971	2839540	portal,terminase,integrase,head	Staphylococcus_phage(60.87%)	27	1458962:1458979	1483231:1483248
1458962:1458979	attL	ATTCAATCATTAATATAT	NA	NA	NA	NA
AXS27147.1|1460965_1462309_-|head	phage head morphogenesis protein	head	A0A1J0MFV1	Staphylococcus_phage	56.8	1.3e-138
AXS27148.1|1462318_1463746_-|portal	phage portal protein	portal	Q4ZE36	Staphylococcus_virus	71.7	6.8e-194
AXS27149.1|1463758_1465033_-|terminase	PBSX family phage terminase large subunit	terminase	Q4ZE37	Staphylococcus_virus	76.2	3.2e-195
AXS27150.1|1465019_1465448_-	helix-turn-helix domain-containing protein	NA	A1EAE0	Streptococcus_phage	45.1	1.1e-25
AXS27151.1|1465600_1466089_-	RNA polymerase subunit sigma-70	NA	R9TMH4	Paenibacillus_phage	28.3	8.7e-08
AXS27152.1|1466131_1466365_-	hypothetical protein	NA	NA	NA	NA	NA
AXS27153.1|1466365_1466830_-	hypothetical protein	NA	C9E2P0	Enterococcus_phage	43.0	3.2e-20
AXS27154.1|1466826_1466934_-	DUF1381 domain-containing protein	NA	C8CH06	Staphylococcus_phage	87.5	1.2e-07
AXS27155.1|1467064_1467595_-	nucleotide pyrophosphohydrolase	NA	A0A1P8VVP1	Streptococcus_phage	39.1	2.3e-22
AXS27156.1|1467587_1467899_-	hypothetical protein	NA	NA	NA	NA	NA
AXS27157.1|1467904_1468063_-	hypothetical protein	NA	A0A0E3T9L7	Staphylococcus_phage	90.4	6.7e-18
AXS27158.1|1468077_1468368_-	hypothetical protein	NA	A0A223LIA9	Staphylococcus_phage	58.1	7.2e-18
AXS27159.1|1468368_1469271_-	DnaD domain protein	NA	A0A1P8L6F0	Staphylococcus_phage	52.0	2.9e-49
AXS28470.1|1469283_1469778_-	single-stranded DNA-binding protein	NA	A7TWM8	Staphylococcus_phage	94.0	6.4e-83
AXS27160.1|1469858_1470638_-	ATP-binding protein	NA	A0A1W6JPW0	Staphylococcus_phage	88.0	2.3e-127
AXS27161.1|1470638_1471175_-	hypothetical protein	NA	A0A0H3U480	Staphylococcus_phage	81.9	4.8e-76
AXS27162.1|1471179_1471446_-	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	53.6	3.0e-18
AXS27163.1|1471435_1471753_-	DUF2482 family protein	NA	W5RAK4	Staphylococcus_phage	80.6	1.6e-39
AXS27164.1|1471839_1472001_-	DUF1270 family protein	NA	R4IH12	Staphylococcus_phage	69.8	1.1e-12
AXS27165.1|1472099_1472783_-	phage repressor protein	NA	A9CR56	Staphylococcus_phage	85.6	5.2e-107
AXS27166.1|1472843_1473050_+	hypothetical protein	NA	A1BTY8	Staphylococcus_virus	75.0	3.3e-25
AXS27167.1|1473473_1473749_-	hypothetical protein	NA	NA	NA	NA	NA
AXS27168.1|1473775_1473994_-	DUF739 family protein	NA	A0A2I6PE94	Staphylococcus_phage	62.5	4.9e-19
AXS27169.1|1474161_1474554_+	helix-turn-helix domain-containing protein	NA	A0A2I6PE55	Staphylococcus_phage	53.6	1.6e-28
AXS27170.1|1474700_1475084_+	hypothetical protein	NA	NA	NA	NA	NA
AXS27171.1|1475095_1475791_+	hypothetical protein	NA	A0A2H4J5B8	uncultured_Caudovirales_phage	50.3	1.4e-06
AXS27172.1|1475843_1476971_+|integrase	site-specific integrase	integrase	A0A0C5AN64	Paenibacillus_phage	31.4	6.2e-33
1483231:1483248	attR	ATATATTAATGATTGAAT	NA	NA	NA	NA
>prophage 8
CP031839	Staphylococcus aureus strain NX-T55 chromosome, complete genome	2839540	1732548	1741021	2839540		Synechococcus_phage(33.33%)	9	NA	NA
AXS27411.1|1732548_1733115_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
AXS27412.1|1733117_1734146_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.7	2.0e-62
AXS27413.1|1734138_1735623_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	3.2e-45
AXS27414.1|1735601_1737791_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.8	3.5e-141
AXS27415.1|1737783_1738455_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
AXS27416.1|1738456_1738720_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
AXS27417.1|1738719_1739424_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
AXS27418.1|1739427_1740552_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
AXS27419.1|1740538_1741021_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
>prophage 9
CP031839	Staphylococcus aureus strain NX-T55 chromosome, complete genome	2839540	1986356	2000329	2839540		uncultured_Caudovirales_phage(55.56%)	16	NA	NA
AXS27655.1|1986356_1987313_-	iron ABC transporter permease	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
AXS28483.1|1987299_1988271_-	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	9.5e-139
AXS27656.1|1988741_1988846_-	hypothetical protein	NA	NA	NA	NA	NA
AXS27657.1|1988978_1989950_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
AXS27658.1|1990067_1992173_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
AXS27659.1|1992135_1992534_-	protein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
AXS27660.1|1992683_1992950_-	ribonucleoside-diphosphate reductase	NA	NA	NA	NA	NA
AXS27661.1|1993334_1994201_+	DMT family transporter	NA	NA	NA	NA	NA
AXS27662.1|1994220_1994721_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
AXS27663.1|1994750_1994996_+	hypothetical protein	NA	NA	NA	NA	NA
AXS27664.1|1995061_1996567_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
AXS27665.1|1996644_1996746_-	hypothetical protein	NA	NA	NA	NA	NA
AXS27666.1|1996836_1997754_+	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	3.7e-07
AXS27667.1|1998166_1998262_-	hypothetical protein	NA	NA	NA	NA	NA
AXS27668.1|1998433_1998976_-	5'(3')-deoxyribonucleotidase	NA	NA	NA	NA	NA
AXS27669.1|1999270_2000329_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.7	7.9e-22
>prophage 10
CP031839	Staphylococcus aureus strain NX-T55 chromosome, complete genome	2839540	2012301	2020120	2839540		Pandoravirus(16.67%)	10	NA	NA
AXS27679.1|2012301_2013453_-	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	36.1	1.2e-23
AXS27680.1|2013436_2014030_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.4	1.4e-36
AXS27681.1|2014380_2015049_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.1	1.1e-64
AXS27682.1|2015050_2015470_+	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
AXS27683.1|2015473_2016187_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
AXS27684.1|2016285_2016870_+	hypothetical protein	NA	NA	NA	NA	NA
AXS27685.1|2017149_2017590_+	hypothetical protein	NA	NA	NA	NA	NA
AXS27686.1|2017930_2018404_+	DoxX family protein	NA	NA	NA	NA	NA
AXS27687.1|2018378_2019065_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AXS27688.1|2019064_2020120_+	two-component sensor histidine kinase	NA	A0A1V0SGX0	Hokovirus	29.5	1.6e-14
>prophage 11
CP031839	Staphylococcus aureus strain NX-T55 chromosome, complete genome	2839540	2359499	2369043	2839540	integrase	Staphylococcus_phage(33.33%)	10	2352244:2352263	2366006:2366025
2352244:2352263	attL	TATAATTATTCCCACTCAAT	NA	NA	NA	NA
AXS27992.1|2359499_2359844_-	pathogenicity island protein	NA	A0A1W6JQD5	Staphylococcus_phage	64.3	1.2e-40
AXS27993.1|2360514_2362887_-	DNA primase	NA	A0A2H4JCU9	uncultured_Caudovirales_phage	39.3	3.7e-136
AXS27994.1|2362977_2363271_-	DUF1474 family protein	NA	A0A1W6JQH0	Staphylococcus_phage	46.1	1.7e-14
AXS27995.1|2363271_2363496_-	hypothetical protein	NA	A0A1W6JPA6	Staphylococcus_phage	58.8	7.5e-15
AXS27996.1|2363681_2363942_-	DNA-binding protein	NA	NA	NA	NA	NA
AXS27997.1|2363938_2364178_-	XRE family transcriptional regulator	NA	Q38329	Lactococcus_phage	40.0	2.5e-08
AXS27998.1|2364310_2364697_+	XRE family transcriptional regulator	NA	U3PIS7	Lactobacillus_phage	41.2	3.8e-06
AXS27999.1|2364780_2365917_+|integrase	site-specific integrase	integrase	A0A1S5S7K9	Streptococcus_phage	42.5	1.0e-75
AXS28000.1|2366010_2367552_-	GMP synthase (glutamine-hydrolyzing)	NA	A0A1V0SH76	Hokovirus	32.6	1.2e-23
2366006:2366025	attR	TATAATTATTCCCACTCAAT	NA	NA	NA	NA
AXS28001.1|2367576_2369043_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.5	5.2e-96
>prophage 12
CP031839	Staphylococcus aureus strain NX-T55 chromosome, complete genome	2839540	2682978	2715397	2839540	transposase	Staphylococcus_phage(52.17%)	37	NA	NA
AXS28281.1|2682978_2683374_-	protein ArsC	NA	A0A2H4PQT9	Staphylococcus_phage	86.3	8.5e-62
AXS28282.1|2683391_2684681_-	arsenical efflux pump membrane protein ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	81.8	1.7e-188
AXS28283.1|2684680_2684995_-	ArsR family transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	73.1	3.6e-39
AXS28284.1|2685055_2685655_-	recombinase family protein	NA	E5FFF9	Burkholderia_phage	30.8	3.1e-15
AXS28285.1|2686161_2686836_-|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	98.7	1.7e-126
AXS28286.1|2687161_2687932_-	aminoglycoside O-nucleotidyltransferase ANT(4')-Ia	NA	NA	NA	NA	NA
AXS28287.1|2688091_2689075_-	protein rep	NA	A0A286QS97	Streptococcus_phage	62.0	6.1e-08
AXS28288.1|2689318_2689993_-|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	98.7	1.7e-126
AXS28515.1|2690187_2691090_+	hypothetical protein	NA	NA	NA	NA	NA
AXS28289.1|2691105_2691549_+	AP2 domain-containing protein	NA	A0A2H4J5K3	uncultured_Caudovirales_phage	43.6	1.5e-22
AXS28290.1|2691572_2691998_+	hypothetical protein	NA	NA	NA	NA	NA
AXS28291.1|2692130_2692805_+|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	97.3	4.1e-125
AXS28292.1|2692943_2693168_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AXS28293.1|2693667_2694747_+|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	33.5	1.6e-38
AXS28516.1|2694770_2694887_+	hypothetical protein	NA	NA	NA	NA	NA
AXS28294.1|2695195_2695999_-	lincosamide nucleotidyltransferase Lnu(B)	NA	NA	NA	NA	NA
AXS28295.1|2696052_2697537_-	ABC-F type ribosomal protection protein Lsa(E)	NA	A0A2H4UUX5	Bodo_saltans_virus	26.0	2.6e-26
AXS28296.1|2698625_2699084_+	hypothetical protein	NA	NA	NA	NA	NA
AXS28517.1|2699134_2699386_-	hypothetical protein	NA	NA	NA	NA	NA
AXS28297.1|2699603_2700413_-	ANT(9) family aminoglycoside nucleotidyltransferase Spw	NA	NA	NA	NA	NA
AXS28298.1|2700544_2701072_-	adenine phosphoribosyltransferase	NA	A0A1X9I6E2	Streptococcus_phage	100.0	1.9e-93
AXS28299.1|2701115_2701979_-	aminoglycoside nucleotidyltransferase ANT(6)-Ia	NA	A0A1X9I6F2	Streptococcus_phage	100.0	8.7e-168
AXS28300.1|2702011_2702746_-	class I SAM-dependent methyltransferase	NA	A0A1X9I6N4	Streptococcus_phage	100.0	1.5e-141
AXS28301.1|2702726_2703560_-	nucleotidyltransferase domain-containing protein	NA	A0A1X9I6C9	Streptococcus_phage	93.3	2.0e-145
AXS28302.1|2703595_2704270_+|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	97.8	5.4e-125
AXS28518.1|2704455_2704518_+	tetracycline resistance leader peptide	NA	NA	NA	NA	NA
AXS28303.1|2704551_2705928_+	tetracycline efflux MFS transporter Tet(L)	NA	NA	NA	NA	NA
AXS28304.1|2705976_2706177_-	hypothetical protein	NA	NA	NA	NA	NA
AXS28305.1|2706491_2707754_+	plasmid recombination protein	NA	NA	NA	NA	NA
AXS28306.1|2707878_2708553_+|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	98.7	1.7e-126
AXS28307.1|2708632_2709367_-	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(C)	NA	E4ZFQ0	Streptococcus_phage	50.8	1.6e-61
AXS28308.1|2709597_2710272_+|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	97.8	1.6e-124
AXS28309.1|2710303_2710567_-	hypothetical protein	NA	NA	NA	NA	NA
AXS28310.1|2711033_2712206_+|transposase	IS256 family transposase IS256	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
AXS28311.1|2712335_2713775_-	bifunctional aminoglycoside N-acetyltransferase AAC(6')-Ie/aminoglycoside O-phosphotransferase APH(2'')-Ia	NA	A0A1X9I6C2	Streptococcus_phage	100.0	3.8e-285
AXS28519.1|2713775_2714168_-	GNAT family N-acetyltransferase	NA	A0A0N7GFH7	Staphylococcus_phage	100.0	6.9e-72
AXS28312.1|2714224_2715397_-|transposase	IS256 family transposase IS256	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
