assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003429505.1_ASM342950v1	CP030142	Leptospira mayottensis strain VS2413 chromosome I, complete sequence	1	358454-359581	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no		cas3,csa3,WYL,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,Cas9_archaeal,DinG,RT	Orphan	CGGTTCAACCCCACGTGTGTGGGGAAAAG,CGGTTCAACCCCNCGTGTGNGGGGAAAAG,CGGTTCAACCCCACGTGTGTGGGGAAAAG	29,29,29	1	1	359398-359429	CP030142.1_3650847-3650816	I-E,II-B:NA:I-E,II-B	18,18,17	18	Orphan	cas3,csa3,WYL,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,Cas9_archaeal,DinG,RT	NA|82aa|up_5|CP030142.1_348248_348494_-,NA|87aa|up_3|CP030142.1_351837_352098_-,NA|106aa|up_2|CP030142.1_352727_353045_+,NA|60aa|up_1|CP030142.1_353065_353245_+,NA|67aa|down_0|CP030142.1_360508_360709_-,NA|204aa|down_1|CP030142.1_362549_363161_-,NA|100aa|down_2|CP030142.1_363335_363635_-,NA|84aa|down_4|CP030142.1_366133_366385_+,NA|62aa|down_8|CP030142.1_370222_370408_+	NA|120aa|up_9|CP030142.1_343236_343596_-	pfam00034, Cytochrom_C, Cytochrome c	NA|106aa|up_8|CP030142.1_343595_343913_-	cd04221, MauL, Methylamine utilization protein MauL	NA|340aa|up_7|CP030142.1_343938_344958_-	TIGR03791, TTQ_mauG, tryptophan tryptophylquinone biosynthesis enzyme MauG	NA|634aa|up_6|CP030142.1_345761_347663_-	pfam07598, DUF1561, Protein of unknown function (DUF1561)	NA|82aa|up_5|CP030142.1_348248_348494_-	NA	NA|634aa|up_4|CP030142.1_349722_351624_-	pfam07598, DUF1561, Protein of unknown function (DUF1561)	NA|87aa|up_3|CP030142.1_351837_352098_-	NA	NA|106aa|up_2|CP030142.1_352727_353045_+	NA	NA|60aa|up_1|CP030142.1_353065_353245_+	NA	NA|890aa|up_0|CP030142.1_354163_356833_+	pfam01752, Peptidase_M9, Collagenase	NA|67aa|down_0|CP030142.1_360508_360709_-	NA	NA|204aa|down_1|CP030142.1_362549_363161_-	NA	NA|100aa|down_2|CP030142.1_363335_363635_-	NA	NA|204aa|down_3|CP030142.1_364486_365098_-	PLN03185, PLN03185, phosphatidylinositol phosphate kinase; Provisional	NA|84aa|down_4|CP030142.1_366133_366385_+	NA	NA|285aa|down_5|CP030142.1_366457_367312_-	pfam12784, PDDEXK_2, PD-(D/E)XK nuclease family transposase	NA|333aa|down_6|CP030142.1_367776_368775_+	pfam13683, rve_3, Integrase core domain	NA|313aa|down_7|CP030142.1_369079_370018_-	pfam04754, Transposase_31, Putative transposase, YhgA-like	NA|62aa|down_8|CP030142.1_370222_370408_+	NA	NA|450aa|down_9|CP030142.1_370419_371769_-	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3
GCA_003429505.1_ASM342950v1	CP030142	Leptospira mayottensis strain VS2413 chromosome I, complete sequence	2	596984-597368	2,2,2	CRISPRCasFinder,CRT,PILER-CR	no		cas3,csa3,WYL,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,Cas9_archaeal,DinG,RT	Orphan	CTTTTCCCCACACACGTGGGGTTGAACCG,CTTTTCCCCACACACGTGGGGTTGAACCG,CGGTTCAACCCCACGTGTGTGGGGAAAAG	29,29,29	0	0	NA	NA	I-E,II-B:I-E,II-B:I-E,II-B	6,6,4	6	Orphan	cas3,csa3,WYL,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,Cas9_archaeal,DinG,RT	NA|335aa|up_7|CP030142.1_583891_584896_+,NA|68aa|up_1|CP030142.1_593798_594002_+,NA|142aa|down_5|CP030142.1_605109_605535_-,NA|225aa|down_6|CP030142.1_606285_606960_-	NA|249aa|up_9|CP030142.1_581663_582410_-	cd03139, GATase1_PfpI_2, Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus	NA|230aa|up_8|CP030142.1_582470_583160_+	TIGR02252, Rhythmically_expressed_gene_2_protein, REG-2-like, HAD superfamily (subfamily IA) hydrolase	NA|335aa|up_7|CP030142.1_583891_584896_+	NA	NA|509aa|up_6|CP030142.1_585320_586847_-	pfam08668, HDOD, HDOD domain	NA|494aa|up_5|CP030142.1_587489_588971_+	cd07134, ALDH_AlkH-like, Pseudomonas putida Aldehyde dehydrogenase AlkH-like	NA|161aa|up_4|CP030142.1_589353_589836_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|375aa|up_3|CP030142.1_590174_591299_-	cd00616, AHBA_syn, 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)	NA|826aa|up_2|CP030142.1_591372_593850_-	COG0466, Lon, ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]	NA|68aa|up_1|CP030142.1_593798_594002_+	NA	NA|478aa|up_0|CP030142.1_594235_595669_+	pfam07603, DUF1566, Protein of unknown function (DUF1566)	NA|398aa|down_0|CP030142.1_597682_598876_+	pfam01551, Peptidase_M23, Peptidase family M23	NA|141aa|down_1|CP030142.1_599192_599615_+	pfam01124, MAPEG, MAPEG family	NA|239aa|down_2|CP030142.1_600343_601060_+	TIGR02135, Uncharacterized_protein, phosphate transport system regulatory protein PhoU	NA|747aa|down_3|CP030142.1_601209_603450_+	COG3831, COG3831, Uncharacterized conserved protein [Function unknown]	NA|270aa|down_4|CP030142.1_604097_604907_-	cd03401, SPFH_prohibitin, Prohibitin family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily	NA|142aa|down_5|CP030142.1_605109_605535_-	NA	NA|225aa|down_6|CP030142.1_606285_606960_-	NA	NA|236aa|down_7|CP030142.1_606956_607664_-	COG0400, COG0400, Predicted esterase [General function prediction only]	NA|256aa|down_8|CP030142.1_607825_608593_+	cd05333, BKR_SDR_c, beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs	NA|234aa|down_9|CP030142.1_609755_610457_-	COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
GCA_003429505.1_ASM342950v1	CP030142	Leptospira mayottensis strain VS2413 chromosome I, complete sequence	3	1805781-1806419	3,3,3	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	cas3,csa3,WYL,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,Cas9_archaeal,DinG,RT	Type I-E	CGGTTCAACCCCACGCATGTGGGGAATAG,CGGTTCAACCCCACGCATGTGGGGAATAG,CGGTTCAACCCCACGCATGTGGGGAATAG	29,29,29	0	0	NA	NA	I-E,II-B:I-E,II-B:I-E,II-B	10,10,9	10	TypeI-E	cas3,csa3,WYL,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,Cas9_archaeal,DinG,RT	NA|132aa|up_7|CP030142.1_1798449_1798845_+,NA|66aa|up_3|CP030142.1_1803182_1803380_+,NA|62aa|up_1|CP030142.1_1804084_1804270_-,NA|75aa|down_8|CP030142.1_1816263_1816488_-,NA|143aa|down_9|CP030142.1_1817023_1817452_-	NA|392aa|up_9|CP030142.1_1796223_1797399_+	cd01155, ACAD_FadE2, Acyl-CoA dehydrogenases similar to fadE2	NA|347aa|up_8|CP030142.1_1797419_1798460_+	cd05154, ACAD10_11_N-like, N-terminal domain of Acyl-CoA dehydrogenase (ACAD) 10 and 11, and similar proteins	NA|132aa|up_7|CP030142.1_1798449_1798845_+	NA	NA|245aa|up_6|CP030142.1_1798851_1799586_+	cd07040, HP, Histidine phosphatase domain found in a functionally diverse set of proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction	NA|711aa|up_5|CP030142.1_1799766_1801899_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|219aa|up_4|CP030142.1_1801900_1802557_-	PRK11752, PRK11752, putative S-transferase; Provisional	NA|66aa|up_3|CP030142.1_1803182_1803380_+	NA	NA|107aa|up_2|CP030142.1_1803624_1803945_+	COG2076, EmrE, Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]	NA|62aa|up_1|CP030142.1_1804084_1804270_-	NA	NA|384aa|up_0|CP030142.1_1804378_1805530_+	COG4299, COG4299, Uncharacterized protein conserved in bacteria [Function unknown]	cas2|144aa|down_0|CP030142.1_1806448_1806880_-	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978)	cas1|295aa|down_1|CP030142.1_1806812_1807697_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|267aa|down_2|CP030142.1_1808296_1809097_-	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions	cas5|249aa|down_3|CP030142.1_1809369_1810116_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|358aa|down_4|CP030142.1_1810116_1811190_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|179aa|down_5|CP030142.1_1811186_1811723_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|534aa|down_6|CP030142.1_1811728_1813330_-	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cas3|931aa|down_7|CP030142.1_1813341_1816134_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|75aa|down_8|CP030142.1_1816263_1816488_-	NA	NA|143aa|down_9|CP030142.1_1817023_1817452_-	NA
GCA_003429505.1_ASM342950v1	CP030142	Leptospira mayottensis strain VS2413 chromosome I, complete sequence	4	2172416-2172565	4	CRISPRCasFinder	no	csa3	cas3,csa3,WYL,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,Cas9_archaeal,DinG,RT	Type I-A	CGGTTCAACCCCACGCATGTGGGGAAAAG	29	0	0	NA	NA	I-E,II-B	2	2	Orphan	cas3,csa3,WYL,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,Cas9_archaeal,DinG,RT	NA|356aa|up_6|CP030142.1_2164275_2165343_+,NA|255aa|down_0|CP030142.1_2173219_2173984_-,NA|255aa|down_1|CP030142.1_2174864_2175629_-,NA|64aa|down_4|CP030142.1_2179731_2179923_+,NA|295aa|down_5|CP030142.1_2180359_2181244_-,NA|312aa|down_8|CP030142.1_2185542_2186478_-,NA|213aa|down_9|CP030142.1_2187178_2187817_-	NA|292aa|up_9|CP030142.1_2159543_2160419_+	cd01572, QPRTase, Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes	NA|675aa|up_8|CP030142.1_2160424_2162449_+	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|601aa|up_7|CP030142.1_2162462_2164265_+	cd08497, PBP2_NikA_DppA_OppA_like_14, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|356aa|up_6|CP030142.1_2164275_2165343_+	NA	NA|434aa|up_5|CP030142.1_2166409_2167711_+	cd01360, Adenylsuccinate_lyase_1, Adenylsuccinate lyase (ASL)_subgroup 1	NA|260aa|up_4|CP030142.1_2167711_2168491_+	cd05266, SDR_a4, atypical (a) SDRs, subgroup 4	NA|269aa|up_3|CP030142.1_2168792_2169599_+	pfam04116, FA_hydroxylase, Fatty acid hydroxylase superfamily	csa3|113aa|up_2|CP030142.1_2169785_2170124_-	COG0640, ArsR, Predicted transcriptional regulators [Transcription]	NA|165aa|up_1|CP030142.1_2170175_2170670_+	cd08901, SRPBCC_CalC_Aha1-like_8, Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins	NA|365aa|up_0|CP030142.1_2171142_2172237_-	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family	NA|255aa|down_0|CP030142.1_2173219_2173984_-	NA	NA|255aa|down_1|CP030142.1_2174864_2175629_-	NA	NA|409aa|down_2|CP030142.1_2176707_2177934_+	cd17388, MFS_TetA, Tetracycline resistance protein TetA and related proteins of the Major Facilitator Superfamily of transporters	NA|286aa|down_3|CP030142.1_2178348_2179206_+	COG1741, COG1741, Pirin-related protein [General function prediction only]	NA|64aa|down_4|CP030142.1_2179731_2179923_+	NA	NA|295aa|down_5|CP030142.1_2180359_2181244_-	NA	NA|607aa|down_6|CP030142.1_2181720_2183541_+	COG1217, TypA, Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]	NA|405aa|down_7|CP030142.1_2184140_2185355_+	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]	NA|312aa|down_8|CP030142.1_2185542_2186478_-	NA	NA|213aa|down_9|CP030142.1_2187178_2187817_-	NA
