assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003429465.1_ASM342946v1	CP023975	Salmonella enterica subsp. enterica serovar Typhi strain Ty21a chromosome, complete genome	1	3895398-3895818	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,cas3,c2c9_V-U4,DinG,WYL,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	6,6,5	6	TypeI-E	DEDDh,cas3,c2c9_V-U4,DinG,WYL,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA|162aa|down_8|CP023975.1_3904362_3904848_+	NA|251aa|up_9|CP023975.1_3887264_3888017_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|CP023975.1_3888006_3889056_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|CP023975.1_3889052_3889532_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|CP023975.1_3889531_3890242_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|CP023975.1_3890260_3890572_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|93aa|up_4|CP023975.1_3890762_3891041_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|CP023975.1_3891136_3891742_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|480aa|up_2|CP023975.1_3891728_3893168_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|CP023975.1_3893177_3894086_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|349aa|up_0|CP023975.1_3894336_3895383_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|CP023975.1_3895902_3896196_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|306aa|down_1|CP023975.1_3896198_3897116_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|235aa|down_2|CP023975.1_3897115_3897820_-	cd09664, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas5|242aa|down_3|CP023975.1_3897819_3898545_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|353aa|down_4|CP023975.1_3898554_3899613_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|201aa|down_5|CP023975.1_3899635_3900238_-	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas8e|512aa|down_6|CP023975.1_3900254_3901790_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|736aa|down_7|CP023975.1_3902147_3904355_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|162aa|down_8|CP023975.1_3904362_3904848_+	NA	NA|361aa|down_9|CP023975.1_3905099_3906182_+	PRK15379, PRK15379, type III secretion system effector SopD
GCA_003429465.1_ASM342946v1	CP023975	Salmonella enterica subsp. enterica serovar Typhi strain Ty21a chromosome, complete genome	2	4756512-4756615	2	CRISPRCasFinder	no	cas3	DEDDh,cas3,c2c9_V-U4,DinG,WYL,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Unclear	GTAGACCCTGATCCAGTAGACCCGGTTATCCCTGA	35	1	1	4756547-4756580	CP023975.1_4756601-4756634	NA	1	1	Unclear	DEDDh,cas3,c2c9_V-U4,DinG,WYL,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA|42aa|up_7|CP023975.1_4748601_4748727_+,NA|115aa|up_6|CP023975.1_4748809_4749154_-,NA|47aa|up_3|CP023975.1_4752741_4752882_+,NA|155aa|down_1|CP023975.1_4757784_4758249_-,NA|112aa|down_2|CP023975.1_4758259_4758595_-,NA|142aa|down_4|CP023975.1_4760956_4761382_-,NA|38aa|down_6|CP023975.1_4764521_4764635_+	NA|773aa|up_9|CP023975.1_4744397_4746716_-	PRK10658, PRK10658, putative alpha-glucosidase; Provisional	NA|461aa|up_8|CP023975.1_4746727_4748110_-	PRK11462, PRK11462, putative transporter; Provisional	NA|42aa|up_7|CP023975.1_4748601_4748727_+	NA	NA|115aa|up_6|CP023975.1_4748809_4749154_-	NA	NA|199aa|up_5|CP023975.1_4749715_4750312_+	TIGR02646, Hypothetical_protein_SMc04429, TIGR02646 family protein	NA|343aa|up_4|CP023975.1_4751382_4752411_+	COG3943, COG3943, Virulence protein [General function prediction only]	NA|47aa|up_3|CP023975.1_4752741_4752882_+	NA	NA|46aa|up_2|CP023975.1_4753261_4753399_+	pfam01527, HTH_Tnp_1, Transposase	NA|206aa|up_1|CP023975.1_4754128_4754746_+	COG2771, CsgD, DNA-binding HTH domain-containing proteins [Transcription]	NA|228aa|up_0|CP023975.1_4754820_4755504_+	PRK15313, PRK15313, intestinal colonization autotransporter adhesin MisL	NA|318aa|down_0|CP023975.1_4756736_4757690_+	PRK15313, PRK15313, intestinal colonization autotransporter adhesin MisL	NA|155aa|down_1|CP023975.1_4757784_4758249_-	NA	NA|112aa|down_2|CP023975.1_4758259_4758595_-	NA	NA|227aa|down_3|CP023975.1_4759900_4760581_+	cd01012, YcaC_related, YcaC related amidohydrolases; E	NA|142aa|down_4|CP023975.1_4760956_4761382_-	NA	NA|909aa|down_5|CP023975.1_4761696_4764423_-	PRK15122, PRK15122, magnesium-transporting ATPase; Provisional	NA|38aa|down_6|CP023975.1_4764521_4764635_+	NA	NA|226aa|down_7|CP023975.1_4764642_4765320_-	PRK15385, PRK15385, MgtC family protein	NA|301aa|down_8|CP023975.1_4765843_4766746_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|314aa|down_9|CP023975.1_4766788_4767730_-	PRK09956, PRK09956, ISNCY family transposase
