The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP023975	Salmonella enterica subsp. enterica serovar Typhi strain Ty21a chromosome, complete genome	4791341	252874	344476	4791341	tail,capsid,head,terminase,portal,tRNA,transposase,lysis,integrase,plate	Salmonella_phage(62.0%)	91	242374:242388	345276:345290
242374:242388	attL	GCGCGCCGCCACGGC	NA	NA	NA	NA
AXR55898.1|252874_253975_-|tRNA	tRNA (uracil-5-)-methyltransferase	tRNA	NA	NA	NA	NA
AXR57153.1|254348_256193_+	tonB-dependent vitamin B12 receptor	NA	A0A0P0I887	Acinetobacter_phage	30.0	2.2e-11
AXR55842.1|256206_256989_+	glutamate racemase	NA	NA	NA	NA	NA
AXR58337.1|262692_262938_+	hypothetical protein	NA	NA	NA	NA	NA
AXR56754.1|262897_263926_+	UDP-N-acetylenolpyruvoylglucosamine reductase	NA	NA	NA	NA	NA
AXR55782.1|263922_264885_+	bifunctional protein BirA	NA	NA	NA	NA	NA
AXR54956.1|264919_265870_-	pantothenate kinase	NA	A0A1B1ISL9	uncultured_Mediterranean_phage	32.5	7.9e-29
AXR56504.1|266828_268013_+	translation elongation factor Tu	NA	A0A2K9L516	Tupanvirus	26.5	2.6e-13
AXR58886.1|268242_268626_+	preprotein translocase, SecE subunit	NA	NA	NA	NA	NA
AXR54776.1|268627_269173_+	transcription termination/antitermination factor NusG	NA	NA	NA	NA	NA
AXR56696.1|269435_269759_+	ribosomal protein L11	NA	NA	NA	NA	NA
AXR55260.1|269762_270467_+	ribosomal protein L1	NA	NA	NA	NA	NA
AXR59152.1|270882_271380_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
AXR57350.1|271446_271812_+	ribosomal protein L7/L12	NA	NA	NA	NA	NA
AXR58679.1|272129_276158_+	DNA-directed RNA polymerase, beta subunit	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	29.0	9.4e-23
AXR55104.1|276234_280458_+	DNA-directed RNA polymerase, beta' subunit	NA	A0A2I7QNZ7	Vibrio_phage	27.1	5.0e-67
AXR59340.1|280544_280823_+	putative membrane protein	NA	NA	NA	NA	NA
AXR58633.1|280828_281149_-	hypothetical protein	NA	NA	NA	NA	NA
AXR59298.1|281126_281264_-	hypothetical protein	NA	NA	NA	NA	NA
AXR59258.1|281494_281623_-|transposase	putative transposase	transposase	A0A077SLK2	Escherichia_phage	88.6	9.8e-12
AXR58657.1|281626_281842_+	putative cytoplasmic protein	NA	NA	NA	NA	NA
AXR57062.1|281922_283056_-	thiazole biosynthesis protein ThiH	NA	NA	NA	NA	NA
AXR56148.1|283052_283823_-	thiazole synthase	NA	NA	NA	NA	NA
AXR57946.1|283824_284025_-	thiamine biosynthesis protein ThiS	NA	NA	NA	NA	NA
AXR58927.1|284005_284764_-	sulfur carrier protein ThiS adenylyltransferase	NA	A0A1V0SAV8	Catovirus	28.5	7.0e-12
AXR54972.1|284756_285392_-	thiamine-phosphate synthase	NA	NA	NA	NA	NA
AXR56633.1|285391_287287_-	thiamine biosynthesis protein ThiC	NA	NA	NA	NA	NA
AXR59013.1|287650_288139_-	regulator of sigma D	NA	NA	NA	NA	NA
AXR58941.1|288231_289005_+	NADH pyrophosphatase zinc ribbon domain protein	NA	NA	NA	NA	NA
AXR59032.1|289045_290110_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
AXR55696.1|290119_290791_+	endonuclease V family protein	NA	A0A1V0SJW5	Klosneuvirus	28.7	2.1e-20
AXR55476.1|290832_291423_+	hypothetical protein	NA	NA	NA	NA	NA
AXR58618.1|291609_291882_+	DNA-binding protein HU-alpha	NA	A7KV42	Bacillus_phage	57.8	5.5e-20
AXR59262.1|291893_292586_+	hypothetical protein	NA	NA	NA	NA	NA
AXR56839.1|292627_293083_-	zinc resistance-associated protein	NA	NA	NA	NA	NA
AXR55512.1|294739_296065_+	transcriptional regulatory protein ZraR	NA	NA	NA	NA	NA
AXR55043.1|296061_297351_-	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
AXR58459.1|297366_298956_-	phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.4	8.4e-68
AXR59055.1|299281_299404_-	hypothetical protein	NA	NA	NA	NA	NA
AXR54892.1|305017_305611_-	lysR substrate binding domain protein	NA	NA	NA	NA	NA
AXR57749.1|305626_305854_-	bacterial regulatory helix-turn-helix, lysR family protein	NA	NA	NA	NA	NA
AXR57407.1|305972_306311_+	hypothetical protein	NA	NA	NA	NA	NA
AXR54952.1|306418_306877_-|transposase	transposase IS200 like family protein	transposase	NA	NA	NA	NA
AXR54778.1|307046_308249_-	sigma-54 interaction domain protein	NA	NA	NA	NA	NA
AXR58599.1|308458_308677_-	ogr/Delta-like zinc finger family protein	NA	Q53ZE7	Salmonella_virus	69.0	7.5e-20
AXR58704.1|308767_309868_-	phage late control D family protein	NA	A0A1S6KZZ5	Salmonella_phage	88.3	1.0e-176
AXR55532.1|309864_310350_-	phage P2 GpU family protein	NA	E5G6Q2	Salmonella_phage	80.0	2.4e-66
AXR55362.1|310346_313424_-|tail	phage tail tape measure protein, TP901 family, core region	tail	E5G6Q1	Salmonella_phage	63.1	0.0e+00
AXR59221.1|313416_313536_-	phage P2 GpE family protein	NA	E5G6Q0	Salmonella_phage	87.2	2.8e-13
AXR59110.1|313550_313853_-	mu-like prophage FluMu gp41 family protein	NA	A0A1S6KZZ9	Salmonella_phage	89.0	7.0e-40
AXR56771.1|313907_314423_-|tail	phage major tail tube protein	tail	A0A1S6L002	Salmonella_phage	95.9	5.6e-90
AXR56218.1|314432_315605_-|tail	phage tail sheath family protein	tail	A0A1S6KZY7	Salmonella_phage	89.7	6.6e-203
AXR57564.1|315649_315790_+	hypothetical protein	NA	NA	NA	NA	NA
AXR58149.1|315747_316314_-	resolvase, N terminal domain protein	NA	A0A0F7LA37	Escherichia_phage	85.7	5.4e-86
AXR57333.1|316742_317183_+|tail	caudovirales tail fiber assembly family protein	tail	A0A0F7LDZ0	Escherichia_phage	68.0	3.1e-52
AXR58177.1|317154_317748_-|tail	caudovirales tail fiber assembly family protein	tail	M1SV83	Escherichia_phage	64.3	9.2e-60
AXR57314.1|317747_319262_-|tail	phage tail-collar fiber family protein	tail	M1TAS6	Escherichia_phage	73.2	6.8e-200
AXR58448.1|319258_319864_-|tail	phage tail protein I	tail	A0A1S6L000	Salmonella_phage	92.0	2.0e-110
AXR58178.1|319856_320765_-|plate	baseplate J-like family protein	plate	A0A1S6KZY6	Salmonella_phage	89.7	1.3e-142
AXR57331.1|320751_321111_-	lysozyme family protein	NA	A0A1S6KZZ4	Salmonella_phage	84.9	6.1e-51
AXR58291.1|321107_321686_-|plate	phage baseplate assembly V family protein	plate	A0A1S6KZX7	Salmonella_phage	86.5	5.5e-94
AXR55226.1|321754_322201_-	phage virion morphogenesis protein	NA	A0A1S6L001	Salmonella_phage	85.6	6.6e-63
AXR58703.1|322193_322625_-|tail	P2 phage tail completion R family protein	tail	E5G6N3	Salmonella_phage	95.1	1.5e-72
AXR56879.1|322587_322761_-	putative fels-2 prophage protein	NA	A0A1S6KZX6	Salmonella_phage	75.4	1.9e-18
AXR59168.1|322720_323149_-|lysis	phage lysis regulatory, LysB family protein	lysis	E5G6N2	Salmonella_phage	77.3	2.2e-47
AXR58531.1|323145_323523_-	putative membrane protein	NA	A0A1S6KZZ2	Salmonella_phage	40.0	2.3e-16
AXR58129.1|323524_324037_-	phage lysozyme family protein	NA	E5G6N1	Salmonella_phage	92.3	3.1e-88
AXR58438.1|324017_324233_-	putative membrane protein	NA	E5G6N0	Salmonella_phage	80.3	1.8e-26
AXR56640.1|324236_324440_-	phage Tail Protein X family protein	NA	E5G6M9	Salmonella_phage	92.5	1.4e-31
AXR55672.1|324439_324904_-|head	phage head completion family protein	head	A0A1S6KZW8	Salmonella_phage	89.0	1.4e-76
AXR54600.1|324999_325650_-|terminase	phage small terminase subunit	terminase	E5G6M7	Salmonella_phage	96.3	8.7e-112
AXR58999.1|325653_326712_-|capsid	phage major capsid protein, P2 family	capsid	E5G6M6	Salmonella_phage	93.1	1.4e-180
AXR54949.1|326728_327562_-|capsid	phage capsid scaffolding (GPO) serine peptidase family protein	capsid	A0A1S6KZW9	Salmonella_phage	90.6	1.5e-121
AXR56102.1|327704_329471_+	sigma-70, region 4 family protein	NA	A0A1S6KZW3	Salmonella_phage	99.5	0.0e+00
AXR58160.1|329470_330508_+|portal	phage portal protein, PBSX family	portal	A0A1S6KZW5	Salmonella_phage	89.5	1.3e-173
AXR56965.1|330542_331283_-	HIRAN domain protein	NA	NA	NA	NA	NA
AXR58089.1|331279_332194_-	hypothetical protein	NA	NA	NA	NA	NA
AXR59237.1|332879_333686_+	putative lipoprotein	NA	A0A2H4J8D6	uncultured_Caudovirales_phage	49.4	7.3e-52
AXR57965.1|333857_334094_+	putative lipoprotein	NA	NA	NA	NA	NA
AXR56868.1|334503_336918_-	bacteriophage replication protein A	NA	E5G6L9	Salmonella_phage	97.5	0.0e+00
AXR58042.1|336914_337772_-	DNA adenine methylase family protein	NA	E5G6L8	Salmonella_phage	96.8	1.7e-160
AXR55379.1|337768_337996_-	phage/conjugal plasmid C-4 type zinc finger, TraR family protein	NA	E5G6L7	Salmonella_phage	100.0	2.7e-36
AXR54758.1|337995_338229_-	hypothetical protein	NA	E5G6L6	Salmonella_phage	94.8	2.0e-31
AXR56072.1|338296_338638_-	hypothetical protein	NA	E5G6L5	Salmonella_phage	98.2	1.7e-55
AXR59056.1|338660_338885_-	putative cell division blocking protein	NA	NA	NA	NA	NA
AXR56078.1|339059_339569_-	phage regulatory CII family protein	NA	E5G6L3	Salmonella_phage	98.8	5.8e-87
AXR56873.1|339601_339823_-	putative dNA-binding protein	NA	NA	NA	NA	NA
AXR57547.1|340188_340518_+	putative repressor protein	NA	F1BUS8	Erwinia_phage	31.4	7.9e-13
AXR55359.1|340913_341966_+|integrase	phage integrase family protein	integrase	A0A218M4I3	Erwinia_phage	57.3	3.6e-107
AXR58639.1|342006_342240_-	subunit ChlI of Mg-chelatase family protein	NA	NA	NA	NA	NA
AXR54961.1|342829_344476_+	acetolactate synthase, large subunit, biosynthetic type	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	31.3	2.6e-64
345276:345290	attR	GCGCGCCGCCACGGC	NA	NA	NA	NA
>prophage 2
CP023975	Salmonella enterica subsp. enterica serovar Typhi strain Ty21a chromosome, complete genome	4791341	612002	704617	4791341	tail,capsid,head,terminase,portal,lysis,integrase,plate	Salmonella_phage(82.0%)	107	613175:613191	709847:709863
AXR55174.1|612002_613154_+|integrase	phage integrase family protein	integrase	B5WZU7	Pseudomonas_phage	44.8	6.3e-49
613175:613191	attL	GTCATTTACGTGATTTA	NA	NA	NA	NA
AXR59324.1|613250_613718_+	putative exported protein	NA	NA	NA	NA	NA
AXR54780.1|613929_614805_+	putative plasmid transfer protein	NA	NA	NA	NA	NA
AXR59264.1|615311_616226_+	hypothetical protein	NA	NA	NA	NA	NA
AXR57993.1|616244_616985_+	hypothetical protein	NA	NA	NA	NA	NA
AXR59158.1|616963_617650_+	transglycosylase SLT domain protein	NA	NA	NA	NA	NA
AXR56278.1|617685_618186_+	integrating conjugative element, PFL_4695 family domain protein	NA	NA	NA	NA	NA
AXR58750.1|618195_618765_+	restriction endonuclease family protein	NA	NA	NA	NA	NA
AXR56233.1|618784_620875_+	conjugative coupling factor TraD, PFGI-1 class	NA	NA	NA	NA	NA
AXR58810.1|620864_621011_+	hypothetical protein	NA	NA	NA	NA	NA
AXR56610.1|621069_621630_+	hypothetical protein	NA	NA	NA	NA	NA
AXR54943.1|621866_622121_+	hypothetical protein	NA	NA	NA	NA	NA
AXR59163.1|622120_622360_+	hypothetical protein	NA	NA	NA	NA	NA
AXR56192.1|622389_622752_+	hypothetical protein	NA	NA	NA	NA	NA
AXR58437.1|622872_623049_-	hypothetical protein	NA	NA	NA	NA	NA
AXR57356.1|623240_623786_+	hypothetical protein	NA	NA	NA	NA	NA
AXR57868.1|623785_624052_+	hypothetical protein	NA	NA	NA	NA	NA
AXR56002.1|624674_626153_+	bacterial conjugation TrbI-like family protein	NA	NA	NA	NA	NA
AXR57856.1|626283_626589_+	putative lipoprotein	NA	NA	NA	NA	NA
AXR55041.1|626588_627005_+	F pilus assembly Type-IV secretion system for plasmid transfer family protein	NA	NA	NA	NA	NA
AXR56295.1|627001_629425_+	conjugative transfer ATPase, PFL_4706 family	NA	NA	NA	NA	NA
AXR58489.1|629403_629583_+	hypothetical protein	NA	NA	NA	NA	NA
AXR56277.1|629579_629966_+	hypothetical protein	NA	NA	NA	NA	NA
AXR56142.1|630120_630513_+	hypothetical protein	NA	NA	NA	NA	NA
AXR58035.1|630509_631478_+	traU family protein	NA	NA	NA	NA	NA
AXR57700.1|631690_632923_+	integrating conjugative element protein, PFL_4711 family	NA	NA	NA	NA	NA
AXR56223.1|633255_634761_+	putative traG protein	NA	NA	NA	NA	NA
AXR55108.1|634999_636247_+	phosphoadenosine phosphosulfate reductase family protein	NA	A0A1B0WNC0	Flavobacterium_phage	30.6	1.8e-28
AXR56848.1|636231_636873_+	parB-like nuclease domain protein	NA	A0A0F7L444	uncultured_marine_virus	53.7	1.1e-55
AXR56203.1|638369_638564_+	hypothetical protein	NA	NA	NA	NA	NA
AXR57177.1|638891_639812_+|integrase	integrase family protein	integrase	NA	NA	NA	NA
AXR57080.1|640535_640838_+	putative topoisomerase	NA	NA	NA	NA	NA
AXR57574.1|640933_641314_+	hypothetical protein	NA	NA	NA	NA	NA
AXR56163.1|641684_641894_+	hypothetical protein	NA	NA	NA	NA	NA
AXR55355.1|641914_642364_+	putative membrane protein	NA	NA	NA	NA	NA
AXR55036.1|642360_642657_+	putative exported protein	NA	NA	NA	NA	NA
AXR55363.1|642734_643193_+	putative membrane protein	NA	NA	NA	NA	NA
AXR58720.1|643281_645231_+	hypothetical protein	NA	A0A2K9V411	Faecalibacterium_phage	38.3	5.9e-31
AXR58939.1|645302_646211_+	hypothetical protein	NA	NA	NA	NA	NA
AXR57394.1|646284_647184_+	hypothetical protein	NA	NA	NA	NA	NA
AXR58892.1|647258_647585_+	hypothetical protein	NA	NA	NA	NA	NA
AXR57270.1|647684_647840_-	hypothetical protein	NA	NA	NA	NA	NA
AXR57363.1|648085_649360_-	IMS HHH motif family protein	NA	F1C5A5	Cronobacter_phage	61.8	4.9e-151
AXR56680.1|650328_651429_-	phage late control D family protein	NA	E5G6Q3	Salmonella_phage	92.1	7.9e-190
AXR57675.1|651425_651911_-	phage P2 GpU family protein	NA	E5G6Q2	Salmonella_phage	93.2	9.4e-71
AXR57613.1|651910_654691_-|tail	phage tail tape measure protein, TP901 family, core region	tail	A0A2H4JGB2	uncultured_Caudovirales_phage	41.1	3.5e-125
AXR56887.1|654683_654803_-	phage P2 GpE family protein	NA	E5G6Q0	Salmonella_phage	94.9	1.2e-14
AXR58436.1|654817_655120_-	mu-like prophage FluMu gp41 family protein	NA	E5G6P9	Salmonella_phage	93.9	3.3e-42
AXR57005.1|655174_655690_-|tail	phage major tail tube protein	tail	E5G6P8	Salmonella_phage	99.4	2.7e-92
AXR56834.1|655699_656872_-|tail	phage tail sheath family protein	tail	A0A1S6KZY7	Salmonella_phage	99.2	1.1e-221
AXR57182.1|656974_657193_-	helix-turn-helix domain of resolvase family protein	NA	A0A1S6L009	Salmonella_phage	88.9	4.0e-29
AXR58867.1|657406_658129_+	guanine nucleotide exchange factor SopE	NA	NA	NA	NA	NA
AXR58479.1|658326_658734_-|tail	caudovirales tail fiber assembly family protein	tail	A0A1B0V844	Salmonella_phage	84.2	4.1e-59
AXR56846.1|658740_660360_-|tail	phage tail-collar fiber family protein	tail	E5G6P0	Salmonella_phage	90.9	2.7e-154
AXR56023.1|660356_660962_-|tail	phage tail protein I	tail	A0A1S6L000	Salmonella_phage	92.0	2.0e-110
AXR58897.1|660954_661863_-|plate	baseplate J-like family protein	plate	E5G6N8	Salmonella_phage	97.0	5.2e-155
AXR58773.1|661849_662209_-	lysozyme family protein	NA	A0A1S6KZZ4	Salmonella_phage	96.6	6.8e-58
AXR57755.1|662205_662784_-|plate	phage baseplate assembly V family protein	plate	E5G6N6	Salmonella_phage	99.5	3.9e-108
AXR56298.1|662852_663299_-	phage virion morphogenesis protein	NA	A0A1S6L001	Salmonella_phage	90.4	2.2e-66
AXR58938.1|663291_663723_-|tail	P2 phage tail completion R family protein	tail	A0A1S6KZY0	Salmonella_phage	98.6	2.5e-75
AXR57000.1|663685_663859_-	putative fels-2 prophage protein	NA	A0A1S6KZX6	Salmonella_phage	98.2	1.4e-24
AXR54830.1|663818_664244_-|lysis	phage lysis regulatory, LysB family protein	lysis	A0A1S6KZX8	Salmonella_phage	97.9	2.5e-67
AXR55152.1|664243_664621_-	putative membrane protein	NA	A0A1S6KZZ2	Salmonella_phage	99.2	1.5e-60
AXR57344.1|664625_665135_-	phage lysozyme family protein	NA	A0A1S6KZY9	Salmonella_phage	97.0	1.3e-91
AXR54806.1|665115_665331_-	putative membrane protein	NA	E5G6N0	Salmonella_phage	98.6	3.8e-32
AXR58521.1|665334_665538_-	phage Tail Protein X family protein	NA	E5G6M9	Salmonella_phage	97.0	9.4e-33
AXR58511.1|665537_666002_-|head	phage head completion family protein	head	A0A1S6KZW8	Salmonella_phage	98.1	2.4e-84
AXR56027.1|666095_666746_-|terminase	phage small terminase subunit	terminase	E5G6M7	Salmonella_phage	99.5	2.4e-114
AXR58430.1|666749_667814_-|capsid	phage major capsid protein, P2 family	capsid	A0A1S6KZZ3	Salmonella_phage	98.3	1.3e-194
AXR59128.1|667830_668664_-|capsid	phage capsid scaffolding (GPO) serine peptidase family protein	capsid	E5G6M5	Salmonella_phage	87.4	6.1e-126
AXR56228.1|668806_670573_+	sigma-70, region 4 family protein	NA	A0A1S6KZW3	Salmonella_phage	96.4	0.0e+00
AXR55179.1|670572_671616_+|portal	phage portal protein, PBSX family	portal	A0A1S6KZW5	Salmonella_phage	86.6	2.1e-176
AXR55610.1|671664_672360_-	hypothetical protein	NA	NA	NA	NA	NA
AXR54753.1|672379_673444_-	hypothetical protein	NA	NA	NA	NA	NA
AXR57578.1|673440_674505_-	hypothetical protein	NA	NA	NA	NA	NA
AXR57513.1|674828_675062_-	dinI-like family protein	NA	A0A1S6L014	Salmonella_phage	92.2	2.2e-33
AXR58290.1|675073_675247_-	putative levan regulatory protein	NA	A0A1S6L006	Salmonella_phage	96.5	7.5e-23
AXR57104.1|675429_677838_-	bacteriophage replication protein A	NA	A0A1S6L028	Salmonella_phage	95.1	0.0e+00
AXR56431.1|677828_678689_-	DNA adenine methylase family protein	NA	E5G6L8	Salmonella_phage	81.8	3.4e-132
AXR58520.1|678685_679270_-	exonuclease family protein	NA	A0A1S6L012	Salmonella_phage	73.7	1.1e-76
AXR58482.1|679266_679494_-	phage/conjugal plasmid C-4 type zinc finger, TraR family protein	NA	A0A1S6L007	Salmonella_phage	94.7	1.0e-35
AXR55173.1|679493_679727_-	hypothetical protein	NA	A0A1S6L021	Salmonella_phage	84.4	9.8e-26
AXR57224.1|679794_680046_-	hypothetical protein	NA	A0A1S6L019	Salmonella_phage	97.6	6.4e-39
AXR57924.1|680099_680246_-	hypothetical protein	NA	A0A1S6L005	Salmonella_phage	95.8	5.4e-22
AXR57832.1|680307_680817_-	phage regulatory CII family protein	NA	A0A1S6L008	Salmonella_phage	94.1	1.3e-83
AXR59245.1|680849_681092_-	putative bacteriophage regulatory protein	NA	A0A1S6KZZ6	Salmonella_phage	98.8	2.3e-38
AXR57292.1|681436_681841_+	putative phage regulatory protein cI	NA	A0A1S6KZZ7	Salmonella_phage	50.4	1.8e-30
AXR55933.1|681844_682870_+|integrase	phage integrase family protein	integrase	A0A1S6L016	Salmonella_phage	98.2	2.7e-200
AXR58514.1|682976_683114_-	peptidase S24-like family protein	NA	I6S1S3	Salmonella_phage	60.5	1.7e-06
AXR58996.1|683597_683711_+	hypothetical protein	NA	NA	NA	NA	NA
AXR56598.1|683976_684234_+	hypothetical protein	NA	NA	NA	NA	NA
AXR59247.1|684244_685135_+	methyltransferase domain protein	NA	NA	NA	NA	NA
AXR58362.1|685134_685881_+	hypothetical protein	NA	NA	NA	NA	NA
AXR58039.1|686182_688153_-	anaphase-promoting complex, cyclosome, subunit 3 family protein	NA	NA	NA	NA	NA
AXR58888.1|688172_689477_-	polysaccharide export inner-membrane, BexC/CtrB/KpsE family protein	NA	NA	NA	NA	NA
AXR55035.1|689499_690195_-	putative vi polysaccharide export ATP-binding protein VexC	NA	NA	NA	NA	NA
AXR57929.1|690220_691015_-	ABC-2 type transporter family protein	NA	NA	NA	NA	NA
AXR54644.1|691024_692092_-	polysaccharide biosynthesis/export family protein	NA	NA	NA	NA	NA
AXR58662.1|692136_693873_-	glycosyl transferases group 1 family protein	NA	NA	NA	NA	NA
AXR58880.1|693872_696344_-	putative vi polysaccharide biosynthesis protein TviD	NA	NA	NA	NA	NA
AXR58216.1|696391_697438_-	3-beta hydroxysteroid dehydrogenase/isomerase family protein	NA	A0A2K9L0I7	Tupanvirus	45.0	1.4e-74
AXR55698.1|697440_698718_-	nucleotide sugar dehydrogenase family protein	NA	M1HYW7	Paramecium_bursaria_Chlorella_virus	26.7	1.3e-21
AXR57296.1|698962_699121_-	putative vi polysaccharide biosynthesis protein TviA	NA	NA	NA	NA	NA
AXR56815.1|700042_700231_+	hypothetical protein	NA	NA	NA	NA	NA
AXR54577.1|700355_701867_+	description family protein	NA	A0A126DN25	Acinetobacter_phage	29.0	2.0e-42
AXR57764.1|701850_703440_+	integrating conjugative element relaxase, PFGI-1 class	NA	NA	NA	NA	NA
AXR58818.1|703603_704617_+|integrase	phage integrase family protein	integrase	NA	NA	NA	NA
709847:709863	attR	TAAATCACGTAAATGAC	NA	NA	NA	NA
>prophage 3
CP023975	Salmonella enterica subsp. enterica serovar Typhi strain Ty21a chromosome, complete genome	4791341	833490	880661	4791341	tRNA,transposase,capsid,integrase	Enterobacteria_phage(40.0%)	56	845005:845020	891951:891966
AXR57546.1|833490_833937_-|transposase	transposase family protein	transposase	NA	NA	NA	NA
AXR55607.1|834011_834398_-	enamine/imine deaminase	NA	NA	NA	NA	NA
AXR55254.1|834474_834936_-	aspartate carbamoyltransferase, regulatory subunit	NA	NA	NA	NA	NA
AXR55816.1|834948_835884_-	aspartate carbamoyltransferase	NA	M1HWF9	Paramecium_bursaria_Chlorella_virus	39.2	6.5e-52
AXR56285.1|836111_836600_-	arginine repressor, C-terminal domain protein	NA	NA	NA	NA	NA
AXR58564.1|836596_836713_-	hypothetical protein	NA	NA	NA	NA	NA
AXR58980.1|836786_838190_-	C4-dicarboxylate anaerobic carrier family protein	NA	NA	NA	NA	NA
AXR58719.1|838245_839250_-	ornithine carbamoyltransferase	NA	NA	NA	NA	NA
AXR57325.1|839249_839387_-	hypothetical protein	NA	NA	NA	NA	NA
AXR55201.1|839361_840294_-	carbamate kinase	NA	NA	NA	NA	NA
AXR56626.1|840304_841525_-	arginine deiminase	NA	NA	NA	NA	NA
AXR58218.1|841625_841805_+	hypothetical protein	NA	NA	NA	NA	NA
AXR56120.1|842199_842652_+	toxin-antitoxin biofilm protein TabA	NA	NA	NA	NA	NA
AXR56753.1|842725_843730_-	ornithine carbamoyltransferase	NA	NA	NA	NA	NA
AXR56706.1|843895_844312_+	regulator of ribonuclease activity B	NA	NA	NA	NA	NA
AXR55637.1|844370_845135_+|tRNA	tRNA- family protein	tRNA	NA	NA	NA	NA
845005:845020	attL	CGCTGGCGCAGCAGAT	NA	NA	NA	NA
AXR54656.1|845144_845300_-	hypothetical protein	NA	NA	NA	NA	NA
AXR56779.1|845379_845868_-	hypothetical protein	NA	NA	NA	NA	NA
AXR56624.1|845974_846478_-	acetyltransferase domain protein	NA	NA	NA	NA	NA
AXR58313.1|846672_847860_+	hypothetical protein	NA	NA	NA	NA	NA
AXR57489.1|848001_850857_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.4	1.6e-141
AXR56935.1|850856_851300_-	DNA polymerase III subunit chi	NA	NA	NA	NA	NA
AXR58168.1|851436_852948_-	cytosol aminopeptidase	NA	Q6GYZ8	Mycoplasma_phage	38.7	1.9e-48
AXR55829.1|853342_854443_+	lipopolysaccharide export system permease protein LptF	NA	NA	NA	NA	NA
AXR59202.1|854442_855525_+	lipopolysaccharide export system permease protein LptG	NA	NA	NA	NA	NA
AXR54968.1|855730_856729_-	periplasmic binding and sugar binding domain of LacI family protein	NA	NA	NA	NA	NA
AXR59271.1|856792_857809_-	gnt-II system L-idonate transporter	NA	NA	NA	NA	NA
AXR56407.1|858753_860019_+|integrase	integrase	integrase	B7SYF8	Stenotrophomonas_phage	41.0	1.6e-74
AXR57432.1|860081_861158_-	kinase domain protein	NA	A0A2H4UU60	Bodo_saltans_virus	28.2	7.8e-17
AXR55358.1|861154_862213_-	phosphotransferase enzyme family protein	NA	G9BWE0	Planktothrix_phage	44.7	4.9e-56
AXR56064.1|862202_863366_-	phosphatase 2C family protein	NA	NA	NA	NA	NA
AXR57677.1|863641_864208_-	polarity suppression protein	NA	Q7M2A1	Enterobacteria_phage	64.9	1.8e-60
AXR55851.1|864223_864463_-	ogr/Delta-like zinc finger family protein	NA	Q7M294	Enterobacteria_phage	60.5	3.7e-20
AXR54513.1|864466_865210_-|capsid	putative phage capsid protein	capsid	NA	NA	NA	NA
AXR57963.1|865749_866073_+	helix-turn-helix domain protein	NA	Q7M299	Enterobacteria_phage	70.0	3.6e-26
AXR56471.1|866362_866557_+	putative phage immunity repressor protein	NA	Q7M2A7	Enterobacteria_phage	83.9	4.6e-21
AXR58478.1|866553_866781_+	putative bacteriophage protein	NA	NA	NA	NA	NA
AXR58540.1|866777_867098_+	putative p4 bacteriophage protein	NA	NA	NA	NA	NA
AXR56843.1|869542_869662_-	hypothetical protein	NA	NA	NA	NA	NA
AXR57479.1|869678_869807_+	hypothetical protein	NA	NA	NA	NA	NA
AXR54546.1|870353_870497_-|integrase	integrase core domain protein	integrase	NA	NA	NA	NA
AXR58952.1|871001_871208_-|transposase	putative transposase	transposase	NA	NA	NA	NA
AXR57708.1|872147_872267_+	fimbrial protein	NA	NA	NA	NA	NA
AXR55570.1|872981_873227_+	gram-negative pili assembly chaperone, C-terminal domain protein	NA	NA	NA	NA	NA
AXR58173.1|873231_875790_+	papC C-terminal domain protein	NA	NA	NA	NA	NA
AXR55823.1|876080_876200_+	putative membrane protein	NA	NA	NA	NA	NA
AXR56339.1|876265_876910_-	CFA/I fimbrial subunit D	NA	NA	NA	NA	NA
AXR54588.1|876933_877080_-	putative fimbrial operon positive regulatory protein	NA	NA	NA	NA	NA
AXR57904.1|877656_877866_+	faeA-like family protein	NA	NA	NA	NA	NA
AXR56167.1|877850_878201_+	bacterial regulatory, luxR family protein	NA	NA	NA	NA	NA
AXR55890.1|878179_878323_+	hypothetical protein	NA	NA	NA	NA	NA
AXR58663.1|878773_879100_+	DSBA-like thioredoxin domain protein	NA	NA	NA	NA	NA
AXR59225.1|879089_879236_+	hypothetical protein	NA	NA	NA	NA	NA
AXR58138.1|879286_880132_+	sdiA-regulated family protein	NA	NA	NA	NA	NA
AXR55032.1|880101_880239_-	hypothetical protein	NA	NA	NA	NA	NA
AXR58546.1|880394_880661_+|transposase	transposase family protein	transposase	NA	NA	NA	NA
891951:891966	attR	CGCTGGCGCAGCAGAT	NA	NA	NA	NA
>prophage 4
CP023975	Salmonella enterica subsp. enterica serovar Typhi strain Ty21a chromosome, complete genome	4791341	1763432	1772603	4791341	tRNA	Enterobacteria_phage(66.67%)	9	NA	NA
AXR54724.1|1763432_1764380_+	ABC transporter family protein	NA	G3M9Y6	Bacillus_virus	31.2	1.7e-23
AXR54667.1|1764363_1765095_+	putative osmoprotectant uptake system permease protein YehW	NA	NA	NA	NA	NA
AXR59332.1|1765242_1765974_-	merR regulatory family protein	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
AXR54850.1|1766196_1767882_+	putative sensor-like histidine kinase YehU	NA	Q9EYF3	Enterobacteria_phage	90.7	6.9e-278
AXR54535.1|1767878_1768598_+	response regulator	NA	NA	NA	NA	NA
AXR54955.1|1768644_1769112_+	hypothetical protein	NA	Q9EYF4	Enterobacteria_phage	91.0	1.4e-74
AXR57797.1|1769168_1769591_-	hypothetical protein	NA	NA	NA	NA	NA
AXR59175.1|1769870_1770329_-	hypothetical protein	NA	Q9EYF5	Enterobacteria_phage	72.5	8.4e-53
AXR59234.1|1770569_1772603_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	26.9	6.1e-55
>prophage 5
CP023975	Salmonella enterica subsp. enterica serovar Typhi strain Ty21a chromosome, complete genome	4791341	1848494	1859001	4791341		Enterobacteria_phage(37.5%)	10	NA	NA
AXR58485.1|1848494_1849898_+	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	26.5	1.1e-21
AXR57199.1|1850075_1850969_+	regulatory protein GalF	NA	A0A127AW70	Bacillus_phage	42.2	4.8e-44
AXR56351.1|1851345_1852431_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.9	1.6e-102
AXR56397.1|1852430_1853330_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.3	7.9e-31
AXR58193.1|1853377_1854256_+	glucose-1-phosphate thymidylyltransferase	NA	I7I009	Enterobacteria_phage	64.8	2.3e-107
AXR59021.1|1854259_1854808_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	58.6	7.7e-53
AXR56690.1|1854813_1855788_+	CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase	NA	NA	NA	NA	NA
AXR57134.1|1855803_1856577_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
AXR58010.1|1856581_1857661_+	CDP-glucose 4,6-dehydratase	NA	A0A222YY99	Synechococcus_phage	24.1	1.3e-16
AXR58913.1|1857687_1859001_+	CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase	NA	H8ZJ36	Ostreococcus_tauri_virus	35.1	7.0e-52
>prophage 6
CP023975	Salmonella enterica subsp. enterica serovar Typhi strain Ty21a chromosome, complete genome	4791341	1965482	1972536	4791341		Salmonella_phage(33.33%)	9	NA	NA
AXR57744.1|1965482_1965722_+	protein UmuD	NA	I6S1S3	Salmonella_phage	82.3	1.2e-29
AXR57120.1|1965724_1966993_+	IMS HHH motif family protein	NA	I6RSM4	Salmonella_phage	91.2	3.3e-224
AXR59240.1|1967075_1967192_+	hypothetical protein	NA	NA	NA	NA	NA
AXR57293.1|1967438_1967651_+	cold shock-like protein CspG	NA	A0A1W6JNX5	Morganella_phage	70.0	1.5e-20
AXR57434.1|1968110_1969295_-	hypothetical protein	NA	Q1MVN1	Enterobacteria_phage	56.4	1.4e-107
AXR57212.1|1969738_1969870_-	hypothetical protein	NA	NA	NA	NA	NA
AXR55221.1|1969978_1970257_+	inner membrane YedR domain protein	NA	NA	NA	NA	NA
AXR56777.1|1970336_1971032_+	hypothetical protein	NA	S4W232	Pandoravirus	27.5	2.1e-07
AXR57168.1|1971105_1972536_+	DNA (cytosine-5-)-methyltransferase family protein	NA	E5E3X6	Burkholderia_phage	57.4	1.0e-104
>prophage 7
CP023975	Salmonella enterica subsp. enterica serovar Typhi strain Ty21a chromosome, complete genome	4791341	2361873	2434995	4791341	tail,head,protease,terminase,tRNA,transposase,integrase,plate	Burkholderia_virus(40.0%)	91	2400889:2400905	2433903:2433919
AXR55261.1|2361873_2363148_+|tRNA	tyrosine--tRNA ligase	tRNA	K4F5T3	Cronobacter_phage	42.1	1.6e-85
AXR58998.1|2363207_2363894_+	pyridoxal kinase	NA	NA	NA	NA	NA
AXR56685.1|2363896_2364502_-	glutathione S-transferase GstA	NA	NA	NA	NA	NA
AXR57961.1|2364606_2366112_-	dipeptide and tripeptide permease A	NA	NA	NA	NA	NA
AXR56907.1|2366712_2367348_-	endonuclease III	NA	NA	NA	NA	NA
AXR57696.1|2367347_2368040_-	electron transport complex, RnfABCDGE type, E subunit	NA	NA	NA	NA	NA
AXR57327.1|2368042_2368663_-	electron transport complex, RnfABCDGE type, G subunit	NA	NA	NA	NA	NA
AXR58020.1|2368666_2369725_-	electron transport complex, RnfABCDGE type, D subunit	NA	NA	NA	NA	NA
AXR54586.1|2369725_2371747_-	electron transport complex, RnfABCDGE type, C subunit	NA	NA	NA	NA	NA
AXR55654.1|2371739_2372318_-	electron transport complex, RnfABCDGE type, B subunit	NA	NA	NA	NA	NA
AXR55982.1|2372317_2372899_-	electron transport complex, RnfABCDGE type, A subunit	NA	NA	NA	NA	NA
AXR56807.1|2372975_2373416_-	inner membrane protein YdgK	NA	NA	NA	NA	NA
AXR55249.1|2373504_2373720_-	oriC-binding nucleoid-associated protein	NA	NA	NA	NA	NA
AXR59308.1|2374351_2375392_+	hypothetical protein	NA	NA	NA	NA	NA
AXR54543.1|2375465_2376467_-	adenosine deaminase	NA	NA	NA	NA	NA
AXR55461.1|2376833_2376983_-	putative pTS system protein, glucose-specific 2B/C component	NA	NA	NA	NA	NA
AXR56327.1|2377172_2378681_-	protein YdgA	NA	NA	NA	NA	NA
AXR55485.1|2378783_2379959_-	mannose-6-phosphate isomerase, class I	NA	NA	NA	NA	NA
AXR55671.1|2380158_2381805_+	fumarate hydratase class I, aerobic	NA	NA	NA	NA	NA
AXR55023.1|2381972_2383376_+	fumarate hydratase, class II	NA	NA	NA	NA	NA
AXR57330.1|2383372_2384302_-	DNA replication terminus site-binding protein	NA	NA	NA	NA	NA
AXR57385.1|2384377_2385679_-	sensor protein RstB	NA	W8CYF6	Bacillus_phage	22.7	5.7e-14
AXR58233.1|2385789_2387490_-	amidohydrolase family protein	NA	NA	NA	NA	NA
AXR56681.1|2387648_2388800_-	outer membrane protein N	NA	Q1MVN1	Enterobacteria_phage	59.1	3.2e-117
AXR58690.1|2388975_2389098_+	hypothetical protein	NA	NA	NA	NA	NA
AXR56185.1|2389280_2390012_-	transcriptional regulatory protein RstA	NA	NA	NA	NA	NA
AXR56743.1|2390138_2390474_+	inner membrane protein YdgC	NA	NA	NA	NA	NA
AXR55497.1|2390535_2391918_-	putative arginine/ornithine antiporter	NA	NA	NA	NA	NA
AXR56571.1|2392067_2392214_+	hypothetical protein	NA	NA	NA	NA	NA
AXR58300.1|2392198_2392771_-	resolvase, N terminal domain protein	NA	A0A0A7NPV4	Enterobacteria_phage	84.7	8.8e-84
AXR58537.1|2393345_2393963_+|tail	caudovirales tail fiber assembly family protein	tail	Q9MCR5	Enterobacteria_phage	59.9	5.8e-65
AXR58902.1|2393969_2394446_-	phage Tail Collar domain protein	NA	A0A0F7LCR3	Escherichia_phage	56.4	1.9e-44
AXR56678.1|2394456_2394960_-	phage Tail Collar domain protein	NA	A0A0F7LCR3	Escherichia_phage	56.3	1.7e-38
AXR56689.1|2395020_2395962_-	phage Tail Collar domain protein	NA	M1TAS6	Escherichia_phage	65.3	1.4e-54
AXR55175.1|2395964_2396543_-|tail	phage tail protein I	tail	A4JWL7	Burkholderia_virus	65.8	6.4e-66
AXR57034.1|2396535_2397639_-|plate	baseplate J-like family protein	plate	Q6QI99	Burkholderia_phage	54.3	5.4e-106
AXR57102.1|2397629_2397977_-	lysozyme family protein	NA	Q6QIA0	Burkholderia_phage	60.6	8.6e-34
AXR57664.1|2398033_2398561_-|plate	phage baseplate assembly V family protein	plate	Q6QIA1	Burkholderia_phage	46.5	1.5e-21
AXR56347.1|2398557_2399712_-	phage late control D family protein	NA	Q6QIA2	Burkholderia_phage	47.1	4.7e-84
AXR58829.1|2399699_2399912_-	phage Tail Protein X family protein	NA	Q6QIA3	Burkholderia_phage	60.0	2.4e-18
AXR55208.1|2399911_2400796_-	phage P2 GpU family protein	NA	A4JWL1	Burkholderia_virus	47.0	7.5e-50
AXR54623.1|2400795_2403261_-|tail	phage tail tape measure protein, TP901 family, core region	tail	A4JWL0	Burkholderia_virus	42.6	2.2e-168
2400889:2400905	attL	GGCAGGCGCTGCGGTTT	NA	NA	NA	NA
AXR54575.1|2403436_2403772_-	mu-like prophage FluMu gp41 family protein	NA	NA	NA	NA	NA
AXR55956.1|2403869_2404103_-	hypothetical protein	NA	NA	NA	NA	NA
AXR57855.1|2404153_2404675_-|tail	phage major tail tube protein	tail	A4JWK6	Burkholderia_virus	68.2	8.0e-68
AXR56279.1|2404674_2406102_-|tail	phage tail sheath family protein	tail	A4JWK5	Burkholderia_virus	77.4	3.7e-216
AXR58615.1|2406091_2406343_-	hypothetical protein	NA	NA	NA	NA	NA
AXR57585.1|2406342_2406807_-	gp37 family protein	NA	Q6QIB2	Burkholderia_phage	51.7	9.1e-39
AXR56782.1|2406806_2407253_-	hypothetical protein	NA	A4JWK2	Burkholderia_virus	52.3	2.2e-34
AXR55188.1|2407254_2407593_-	putative dihydrolipoamide acyltransferase	NA	NA	NA	NA	NA
AXR55020.1|2407602_2408556_-	hypothetical protein	NA	A4JWK0	Burkholderia_virus	44.5	5.2e-65
AXR55385.1|2408570_2409686_-|protease	putative protease	protease	A4JWJ9	Burkholderia_virus	51.1	7.9e-97
AXR59288.1|2409900_2410359_-	phage virion morphogenesis protein	NA	Q6QIB8	Burkholderia_phage	44.8	1.5e-30
AXR56558.1|2410361_2411183_-|head	phage head morphogenesis, SPP1 gp7 family domain protein	head	A4JWJ6	Burkholderia_virus	61.2	5.3e-98
AXR55119.1|2411163_2412660_-	hypothetical protein	NA	A4JWJ5	Burkholderia_virus	59.6	8.0e-169
AXR54710.1|2412659_2414255_-|terminase	terminase-like family protein	terminase	A4JWJ4	Burkholderia_virus	62.6	9.3e-184
AXR56332.1|2414251_2414797_-	hypothetical protein	NA	A4JWJ3	Burkholderia_virus	67.6	9.3e-59
AXR58931.1|2414796_2415108_-	putative gp55	NA	A0A0S4L0A3	Pseudomonas_phage	62.6	2.1e-31
AXR58837.1|2415107_2415434_-	putative phage membrane protein	NA	Q6QIC4	Burkholderia_phage	49.5	9.6e-19
AXR56125.1|2415430_2416081_-	putative lipoprotein	NA	Q5ZQY9	Pseudomonas_phage	32.9	8.1e-09
AXR57470.1|2416064_2416793_-	transglycosylase SLT domain protein	NA	Q5ZQZ1	Pseudomonas_phage	57.4	2.7e-61
AXR57550.1|2416795_2417146_-	hypothetical protein	NA	A4JWP3	Burkholderia_virus	53.0	4.5e-22
AXR56745.1|2417389_2418061_-	37-kD nucleoid-associated bacterial family protein	NA	NA	NA	NA	NA
AXR58971.1|2418038_2418413_+	hypothetical protein	NA	A4JWN3	Burkholderia_virus	59.5	3.8e-27
AXR56180.1|2418422_2418587_+	gp41 family domain protein	NA	NA	NA	NA	NA
AXR58050.1|2418590_2420360_+|integrase	integrase core domain protein	integrase	Q6QIE0	Burkholderia_phage	68.5	2.8e-229
AXR56318.1|2420370_2421537_+	molybdopterin guanine dinucleotide synthesis B family protein	NA	A4JWN1	Burkholderia_virus	59.7	3.3e-122
AXR54967.1|2421523_2421637_-	putative membrane protein	NA	NA	NA	NA	NA
AXR57684.1|2421683_2421809_+	hypothetical protein	NA	NA	NA	NA	NA
AXR54900.1|2421836_2422367_+	bacteriophage Mu Gam like family protein	NA	L7P7T1	Pseudomonas_phage	66.1	3.4e-58
AXR56368.1|2422377_2422599_-	hypothetical protein	NA	NA	NA	NA	NA
AXR55751.1|2422655_2422928_+	hypothetical protein	NA	NA	NA	NA	NA
AXR55335.1|2422937_2423240_+	hypothetical protein	NA	NA	NA	NA	NA
AXR54997.1|2423236_2423620_+	hypothetical protein	NA	K7PJQ4	Enterobacteria_phage	58.9	2.3e-27
AXR58825.1|2423612_2423828_+	hypothetical protein	NA	NA	NA	NA	NA
AXR56266.1|2423824_2424508_+	hypothetical protein	NA	A0A2P9JZH4	Alteromonadaceae_phage	37.3	2.6e-34
AXR54747.1|2424504_2424735_+	hypothetical protein	NA	NA	NA	NA	NA
AXR57301.1|2424724_2424940_+	putative membrane protein	NA	NA	NA	NA	NA
AXR54930.1|2424932_2425382_+	hypothetical protein	NA	A4JWM5	Burkholderia_virus	46.6	9.4e-25
AXR59219.1|2425353_2425743_+	mor transcription activator family protein	NA	Q6QIE8	Burkholderia_phage	54.2	4.5e-31
AXR57315.1|2425924_2426869_-	protein YdgH	NA	NA	NA	NA	NA
AXR57266.1|2427395_2428925_+	NAD(P)(+) transhydrogenase (AB-specific), alpha subunit	NA	NA	NA	NA	NA
AXR54536.1|2428935_2430324_+	NAD(P) transhydrogenase subunit beta	NA	NA	NA	NA	NA
AXR56911.1|2430498_2431533_-	AI-2 transport protein TqsA	NA	NA	NA	NA	NA
AXR54995.1|2431516_2431636_+	hypothetical protein	NA	NA	NA	NA	NA
AXR56804.1|2431700_2431838_+	hypothetical protein	NA	NA	NA	NA	NA
AXR57036.1|2431949_2432312_+	spermidine export protein MdtJ	NA	NA	NA	NA	NA
AXR58199.1|2432298_2432628_+	small Multidrug Resistance family protein	NA	NA	NA	NA	NA
AXR58659.1|2432662_2433484_-	trypsin-like peptidase domain protein	NA	NA	NA	NA	NA
AXR56835.1|2433752_2434004_-	acid shock repeat family protein	NA	NA	NA	NA	NA
2433903:2433919	attR	GGCAGGCGCTGCGGTTT	NA	NA	NA	NA
AXR55735.1|2434536_2434995_+|transposase	transposase IS200 like family protein	transposase	NA	NA	NA	NA
>prophage 8
CP023975	Salmonella enterica subsp. enterica serovar Typhi strain Ty21a chromosome, complete genome	4791341	2454211	2460061	4791341		uncultured_virus(16.67%)	9	NA	NA
AXR56699.1|2454211_2454538_+	hypothetical protein	NA	A0A218MNG8	uncultured_virus	52.0	1.3e-23
AXR58028.1|2454518_2454650_+	hypothetical protein	NA	NA	NA	NA	NA
AXR54845.1|2454659_2455874_+	mandelate racemase / muconate lactonizing enzyme, C-terminal domain protein	NA	Q6A202	Oenococcus_phage	29.2	1.8e-46
AXR58653.1|2455884_2456748_+	alcohol dehydrogenase GroES-like domain protein	NA	NA	NA	NA	NA
AXR56466.1|2456885_2458181_+	sugar (and other) transporter family protein	NA	Q6JIH2	Burkholderia_virus	25.8	1.1e-25
AXR57908.1|2458235_2458349_-	hypothetical protein	NA	NA	NA	NA	NA
AXR56828.1|2458324_2458870_+	mannitol dehydrogenase Rossmann domain protein	NA	G9E6E2	Micromonas_pusilla_virus	30.4	4.1e-06
AXR55640.1|2459050_2459791_+	mannitol dehydrogenase C-terminal domain protein	NA	H8ZJP8	Ostreococcus_tauri_virus	32.3	2.8e-18
AXR55103.1|2459857_2460061_-	putative selenoprotein YdfZ	NA	J9Q802	Salmonella_phage	55.2	2.9e-13
>prophage 9
CP023975	Salmonella enterica subsp. enterica serovar Typhi strain Ty21a chromosome, complete genome	4791341	2882205	2956306	4791341	tail,head,protease,terminase,transposase,integrase	Salmonella_phage(72.88%)	87	2911715:2911729	2956341:2956355
AXR56204.1|2882205_2882664_-|transposase	transposase IS200 like family protein	transposase	NA	NA	NA	NA
AXR56320.1|2882753_2883017_-	putative bacterial regulatory protein, AraC	NA	NA	NA	NA	NA
AXR54717.1|2883033_2883156_-	ybhB/YbcL family Raf kinase inhibitor-like domain protein	NA	NA	NA	NA	NA
AXR58014.1|2883143_2883581_-	hypothetical protein	NA	NA	NA	NA	NA
AXR57996.1|2883795_2885007_+	ribosomal RNA large subunit methyltransferase I	NA	NA	NA	NA	NA
AXR56216.1|2885064_2885382_+	heat shock protein HspQ	NA	NA	NA	NA	NA
AXR57375.1|2885426_2885840_-	coA binding domain protein	NA	NA	NA	NA	NA
AXR57722.1|2886013_2886676_+	hypothetical protein	NA	NA	NA	NA	NA
AXR57478.1|2886770_2887229_+	methylglyoxal synthase	NA	NA	NA	NA	NA
AXR54768.1|2887264_2889319_-	helicase IV	NA	A7KV33	Bacillus_phage	27.6	6.5e-20
AXR58619.1|2889442_2889889_+	inner membrane protein YccF	NA	NA	NA	NA	NA
AXR57108.1|2889907_2892061_+	inner membrane protein YccS	NA	NA	NA	NA	NA
AXR59155.1|2892047_2892530_-	protein sxy	NA	NA	NA	NA	NA
AXR57566.1|2892869_2893379_+	cell division inhibitor SulA	NA	NA	NA	NA	NA
AXR56382.1|2893733_2894786_+	outer membrane protein A	NA	NA	NA	NA	NA
AXR56853.1|2894857_2895310_-	organizer of macrodomain of Terminus of chromosome family protein	NA	NA	NA	NA	NA
AXR57163.1|2895495_2897256_+|protease	lon protease (S16) C-terminal proteolytic domain protein	protease	NA	NA	NA	NA
AXR56230.1|2897324_2897843_+	beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA	NA	NA	NA	NA	NA
AXR58926.1|2898363_2898927_-	hypothetical protein	NA	NA	NA	NA	NA
AXR54632.1|2898923_2900564_-	mce related family protein	NA	NA	NA	NA	NA
AXR58118.1|2900568_2901822_-	integral membrane, PqiA family protein	NA	NA	NA	NA	NA
AXR58525.1|2901836_2903744_-	heme ABC exporter, ATP-binding protein CcmA	NA	A0A2K9L3Z8	Tupanvirus	29.8	2.4e-53
AXR55659.1|2903756_2905865_-	ribosomal RNA large subunit methyltransferase K/L	NA	W6LLI2	Streptococcus_phage	29.6	5.1e-20
AXR56829.1|2905963_2907073_+	hypothetical protein	NA	NA	NA	NA	NA
AXR56263.1|2907069_2907612_-	cell division protein ZapC	NA	NA	NA	NA	NA
AXR54550.1|2907777_2908788_-	dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
AXR57497.1|2908995_2911608_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	22.6	1.1e-19
2911715:2911729	attL	GCTACATTTTTATAA	NA	NA	NA	NA
AXR55125.1|2912033_2912312_+	dinI-like family protein	NA	S4TNM0	Salmonella_phage	92.3	2.4e-26
AXR57259.1|2913522_2913663_-	putative dNA-invertase	NA	S4TTF2	Salmonella_phage	92.5	4.8e-12
AXR58968.1|2913832_2913949_+	hypothetical protein	NA	NA	NA	NA	NA
AXR57221.1|2914247_2914766_-|tail	caudovirales tail fiber assembly family protein	tail	A0A1B0VCD0	Salmonella_phage	62.8	1.7e-46
AXR58011.1|2914780_2916292_-|tail	putative side tail fiber protein	tail	S4TP62	Salmonella_phage	59.4	1.5e-111
AXR57044.1|2916291_2916972_-	hypothetical protein	NA	A0A0M5M1K4	Salmonella_phage	98.7	6.9e-128
AXR55403.1|2916968_2918168_-	hypothetical protein	NA	A0A0M4RD32	Salmonella_phage	97.5	8.5e-214
AXR54729.1|2918168_2918522_-	hypothetical protein	NA	A0A0M4R339	Salmonella_phage	98.3	3.2e-60
AXR58500.1|2918762_2919428_-	putative translation initiation factor IF-2	NA	A0A0M5M1K7	Salmonella_phage	86.0	6.8e-104
AXR58277.1|2919576_2919819_-	putative bacteriophage protein	NA	NA	NA	NA	NA
AXR58636.1|2920004_2920736_-	hypothetical protein	NA	NA	NA	NA	NA
AXR56136.1|2920930_2921071_-	putative exported protein	NA	A0A2H4J1A5	uncultured_Caudovirales_phage	71.1	1.7e-09
AXR55536.1|2921262_2922294_-	hypothetical protein	NA	A0A2H4J1B2	uncultured_Caudovirales_phage	51.4	1.2e-96
AXR57037.1|2922296_2922599_-	putative bacteriophage protein	NA	A0A2H4J495	uncultured_Caudovirales_phage	57.0	2.0e-26
AXR56637.1|2922602_2923253_-	hypothetical protein	NA	A0A0M3ULD5	Salmonella_phage	60.6	3.0e-56
AXR57159.1|2923252_2925205_-	putative lytic transglycosylase, catalytic	NA	A0A0M4REK7	Salmonella_phage	56.0	1.8e-181
AXR57674.1|2925382_2925835_-	hypothetical protein	NA	A0A0M4S6U8	Salmonella_phage	76.6	1.9e-57
AXR56172.1|2925838_2926279_-	hypothetical protein	NA	A0A2H4J619	uncultured_Caudovirales_phage	74.7	3.5e-56
AXR58812.1|2926290_2927436_-	hypothetical protein	NA	A0A2H4J8G4	uncultured_Caudovirales_phage	74.5	2.2e-163
AXR55651.1|2927439_2927988_-	putative bacteriophage protein	NA	A0A0M4R331	Salmonella_phage	75.8	5.1e-81
AXR55465.1|2927977_2928367_-	putative bacteriophage protein	NA	A0A0M3ULK0	Salmonella_phage	98.4	6.0e-68
AXR57914.1|2928353_2928908_-	putative bacteriophage protein	NA	A0A0M4S631	Salmonella_phage	100.0	4.8e-95
AXR58004.1|2928904_2929312_-	hypothetical protein	NA	A0A0M5M3S2	Salmonella_phage	97.8	7.1e-72
AXR56478.1|2929277_2929646_-	putative bacteriophage protein	NA	A0A0M4RTX5	Salmonella_phage	100.0	8.7e-61
AXR56665.1|2929687_2930629_-	hypothetical protein	NA	A0A0M3ULD3	Salmonella_phage	100.0	3.1e-179
AXR55768.1|2930640_2931138_-	hypothetical protein	NA	A0A0M4QWZ6	Salmonella_phage	99.4	8.7e-88
AXR58232.1|2931142_2932375_-	hypothetical protein	NA	A0A0M4R5A6	Salmonella_phage	99.0	1.4e-227
AXR55712.1|2932389_2932998_-|head	phage head morphogenesis, SPP1 gp7 family domain protein	head	A0A0M4REK0	Salmonella_phage	88.1	6.4e-101
AXR57728.1|2933011_2934481_-	hypothetical protein	NA	A0A0M4S6U1	Salmonella_phage	99.2	1.7e-280
AXR58841.1|2934480_2935521_-	hypothetical protein	NA	A0A077KAW0	Edwardsiella_phage	67.7	3.7e-133
AXR54847.1|2935849_2936602_-|terminase	putative phage terminase small subunit	terminase	A0A0M3ULJ9	Salmonella_phage	56.5	3.4e-11
AXR54825.1|2937015_2937393_-	putative gp63	NA	Q6UAR9	Klebsiella_phage	68.5	4.9e-43
AXR54709.1|2937435_2937975_-	hypothetical protein	NA	A0A291LBG9	Klebsiella_phage	38.4	2.5e-08
AXR57586.1|2937971_2938586_-	chitinase class I family protein	NA	Q8HA86	Salmonella_phage	93.1	3.2e-108
AXR59123.1|2938585_2938867_-	hypothetical protein	NA	K7PKN9	Enterobacterial_phage	80.6	2.6e-36
AXR56408.1|2938853_2939198_-	putative membrane protein	NA	G8C7V8	Escherichia_phage	67.3	2.6e-35
AXR55773.1|2940568_2941366_-	antitermination family protein	NA	A0A0M4S661	Salmonella_phage	99.2	3.4e-150
AXR57118.1|2941498_2941864_-	bacteriophage Lambda NinG family protein	NA	A0A0M4RU10	Salmonella_phage	98.3	8.4e-64
AXR56010.1|2941873_2942101_+	hypothetical protein	NA	NA	NA	NA	NA
AXR58961.1|2942112_2942319_-	hypothetical protein	NA	S4TNP0	Salmonella_phage	100.0	3.5e-35
AXR56201.1|2942318_2942921_-	hypothetical protein	NA	S4TTI0	Salmonella_phage	99.5	7.5e-110
AXR58946.1|2943255_2943495_-	DNA-damage-inducible protein I	NA	H6WRY5	Salmonella_phage	100.0	3.9e-38
AXR57499.1|2943679_2944177_-	death-on-curing family protein	NA	NA	NA	NA	NA
AXR58558.1|2944852_2945008_-	putative bacteriophage protein	NA	S4TNF2	Salmonella_phage	98.0	4.7e-24
AXR55887.1|2945263_2945785_-	hypothetical protein	NA	S4TSR6	Salmonella_phage	68.0	1.2e-66
AXR54665.1|2945788_2946262_-	methyltransferase domain protein	NA	H9C170	Pectobacterium_phage	80.1	1.6e-67
AXR55029.1|2946261_2946786_-	ead/Ea22-like family protein	NA	A0A220NQV2	Salmonella_phage	99.4	1.8e-91
AXR54834.1|2946782_2947100_-	hypothetical protein	NA	H6WRX9	Salmonella_phage	89.5	8.1e-47
AXR57942.1|2947140_2947890_-	istB-like ATP binding family protein	NA	S4TNF5	Salmonella_phage	99.6	3.6e-138
AXR56942.1|2947892_2948807_-	phage replication protein O, N-terminal domain	NA	H6WRX7	Salmonella_phage	99.7	2.0e-162
AXR57510.1|2948960_2949110_-	putative gifsy-1 prophage cI protein	NA	H6WRX6	Salmonella_phage	100.0	2.0e-19
AXR57805.1|2950410_2950560_+	hypothetical protein	NA	G8C7T2	Escherichia_phage	47.9	8.5e-07
AXR57925.1|2950650_2950947_+	host-nuclease inhibitor Gam family protein	NA	A0A0M5M5Z9	Salmonella_phage	96.9	4.4e-47
AXR56181.1|2950952_2951738_+	phage recombination protein Bet	NA	A0A0M4RD39	Salmonella_phage	99.6	9.7e-150
AXR57467.1|2951734_2952415_+	exonuclease	NA	A0A0M3ULE0	Salmonella_phage	98.7	1.9e-130
AXR57694.1|2952492_2953557_+	DGQHR domain protein	NA	T1SBJ4	Salmonella_phage	74.6	6.3e-152
AXR54699.1|2953589_2954435_+	DNA adenine methylase family protein	NA	A0A0M4R347	Salmonella_phage	93.2	1.3e-152
AXR56596.1|2954437_2954680_+	hypothetical protein	NA	S4TR31	Salmonella_phage	96.2	9.9e-37
AXR56344.1|2954720_2954969_+	hypothetical protein	NA	S4TND0	Salmonella_phage	100.0	4.7e-42
AXR59083.1|2955013_2956306_+|integrase	phage integrase family protein	integrase	S4TSP2	Salmonella_phage	99.8	5.0e-252
2956341:2956355	attR	GCTACATTTTTATAA	NA	NA	NA	NA
>prophage 10
CP023975	Salmonella enterica subsp. enterica serovar Typhi strain Ty21a chromosome, complete genome	4791341	3027571	3034745	4791341	integrase,protease	Ralstonia_phage(16.67%)	8	3022301:3022315	3033481:3033495
3022301:3022315	attL	GGAAAATCAACGCTG	NA	NA	NA	NA
AXR55789.1|3027571_3027811_+|integrase	phage integrase domain protein	integrase	A0A077KET4	Ralstonia_phage	45.6	2.3e-14
AXR57766.1|3028153_3028270_-	hypothetical protein	NA	NA	NA	NA	NA
AXR56076.1|3028381_3030658_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.2	1.8e-164
AXR56348.1|3030688_3031009_-|protease	ATP-dependent Clp protease adaptor ClpS family protein	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	4.5e-13
AXR57496.1|3031332_3031554_+	cold shock domain protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.2	9.3e-18
AXR55605.1|3031508_3031652_-	hypothetical protein	NA	NA	NA	NA	NA
AXR58836.1|3031683_3033630_-	macrolide export ATP-binding/permease protein MacB	NA	G9BWD6	Planktothrix_phage	43.1	2.0e-39
3033481:3033495	attR	CAGCGTTGATTTTCC	NA	NA	NA	NA
AXR56494.1|3033626_3034745_-	macrolide-specific efflux protein MacA	NA	A0A140XAI1	Dickeya_phage	39.8	8.1e-09
>prophage 11
CP023975	Salmonella enterica subsp. enterica serovar Typhi strain Ty21a chromosome, complete genome	4791341	3718390	3743515	4791341	tail,capsid,integrase	Enterobacteria_phage(38.89%)	26	3711541:3711556	3722898:3722913
3711541:3711556	attL	CGCCAACACCACCGGC	NA	NA	NA	NA
AXR56107.1|3718390_3719590_+|integrase	prophage CP4-57 integrase	integrase	A0A1B5FPC6	Escherichia_phage	50.6	4.8e-108
AXR55085.1|3719624_3720176_-	hypothetical protein	NA	NA	NA	NA	NA
AXR59001.1|3720367_3721189_-	hypothetical protein	NA	NA	NA	NA	NA
AXR58490.1|3721508_3722081_-	polarity suppression protein	NA	Q7M2A1	Enterobacteria_phage	97.3	2.2e-95
AXR56548.1|3722154_3722295_-	putative transactivation protein	NA	NA	NA	NA	NA
AXR55303.1|3722651_3723386_-|capsid	putative glyco3, capsid size determination protein Sid	capsid	Q7M2A2	Enterobacteria_phage	99.2	1.2e-130
3722898:3722913	attR	GCCGGTGGTGTTGGCG	NA	NA	NA	NA
AXR58583.1|3723985_3724204_+	helix-turn-helix domain protein	NA	Q7M299	Enterobacteria_phage	98.6	2.6e-36
AXR56200.1|3724200_3724791_+	ash family protein	NA	Q7M2A7	Enterobacteria_phage	90.3	5.3e-60
AXR59179.1|3724783_3725071_+	putative derepression protein	NA	Q7M2A0	Enterobacteria_phage	97.9	8.6e-48
AXR55258.1|3725063_3725519_+	hypothetical protein	NA	Q7M298	Enterobacteria_phage	99.1	1.6e-64
AXR57849.1|3725654_3725975_+	hypothetical protein	NA	NA	NA	NA	NA
AXR55080.1|3725989_3728323_+	putative P4-specific DNA primase	NA	Q7M2A8	Enterobacteria_phage	99.0	0.0e+00
AXR57324.1|3728576_3728756_+	hypothetical protein	NA	NA	NA	NA	NA
AXR57099.1|3728946_3729252_-	reverse transcriptase family protein	NA	NA	NA	NA	NA
AXR55983.1|3730123_3730342_-	ogr/Delta-like zinc finger family protein	NA	Q53ZE7	Salmonella_virus	71.9	1.9e-18
AXR57211.1|3730432_3731533_-	phage late control D family protein	NA	A0A1S6KZZ5	Salmonella_phage	88.3	1.0e-176
AXR58774.1|3731529_3732015_-	phage P2 GpU family protein	NA	E5G6Q2	Salmonella_phage	80.0	2.4e-66
AXR56838.1|3732011_3735089_-|tail	phage tail tape measure protein, TP901 family, core region	tail	E5G6Q1	Salmonella_phage	63.1	0.0e+00
AXR59266.1|3735081_3735201_-	phage P2 GpE family protein	NA	E5G6Q0	Salmonella_phage	87.2	2.8e-13
AXR58281.1|3735215_3735518_-	mu-like prophage FluMu gp41 family protein	NA	A0A1S6KZZ9	Salmonella_phage	89.0	7.0e-40
AXR55690.1|3735572_3736088_-|tail	phage major tail tube protein	tail	A0A1S6L002	Salmonella_phage	95.9	5.6e-90
AXR59199.1|3736097_3737270_-|tail	phage tail sheath family protein	tail	A0A1S6KZY7	Salmonella_phage	90.3	3.5e-204
AXR55417.1|3737412_3737979_-	resolvase, N terminal domain protein	NA	A0A0F7LA37	Escherichia_phage	86.3	1.1e-86
AXR54516.1|3738241_3738409_+	hypothetical protein	NA	NA	NA	NA	NA
AXR56984.1|3738662_3739778_+	UDP-glucoronosyl and UDP-glucosyl transferase family protein	NA	NA	NA	NA	NA
AXR58817.1|3739858_3743515_+	lipid A export permease/ATP-binding protein MsbA	NA	W8CYL7	Bacillus_phage	28.6	1.0e-44
