The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP023468	Salmonella enterica subsp. enterica strain BAA-1586 chromosome, complete genome	4639823	770892	780065	4639823	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
AXR32851.1|770892_771840_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.2	1.7e-23
AXR32852.1|771823_772555_+	ABC transporter permease	NA	NA	NA	NA	NA
AXR32853.1|772535_772643_-	hypothetical protein	NA	NA	NA	NA	NA
AXR32854.1|772702_773434_-	transcriptional regulator	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
AXR32855.1|773658_775344_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	91.1	2.4e-278
AXR32856.1|775340_776060_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AXR32857.1|776106_776574_+	DUF1456 domain-containing protein	NA	Q9EYF4	Enterobacteria_phage	90.3	3.9e-74
AXR32858.1|776630_777161_-	DUF1307 domain-containing protein	NA	NA	NA	NA	NA
AXR32859.1|777332_777791_-	DUF1307 domain-containing protein	NA	Q9EYF5	Enterobacteria_phage	73.2	7.6e-54
AXR32860.1|778031_780065_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	27.6	1.0e-54
>prophage 2
CP023468	Salmonella enterica subsp. enterica strain BAA-1586 chromosome, complete genome	4639823	844219	854726	4639823		Enterobacteria_phage(37.5%)	10	NA	NA
AXR32914.1|844219_845623_+	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	26.5	1.4e-21
AXR32915.1|845800_846694_+	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	42.2	4.8e-44
AXR32916.1|847070_848156_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.9	1.6e-102
AXR32917.1|848155_849055_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.0	6.7e-30
AXR36429.1|849102_849981_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	65.5	2.7e-108
AXR32918.1|849981_850533_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	58.0	1.3e-52
AXR32919.1|850538_851513_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
AXR32920.1|851528_852302_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
AXR32921.1|852306_853386_+	CDP-glucose 4,6-dehydratase	NA	A0A222YY99	Synechococcus_phage	24.5	2.3e-16
AXR32922.1|853412_854726_+	lipopolysaccharide biosynthesis protein RfbH	NA	H8ZJ36	Ostreococcus_tauri_virus	35.1	7.0e-52
>prophage 3
CP023468	Salmonella enterica subsp. enterica strain BAA-1586 chromosome, complete genome	4639823	986174	993409	4639823		Morganella_phage(33.33%)	8	NA	NA
AXR33028.1|986174_986594_+	translesion error-prone DNA polymerase V subunit UmuD	NA	A0A1W6JNS2	Morganella_phage	60.5	8.5e-36
AXR33029.1|986596_987865_+	translesion error-prone DNA polymerase V subunit UmuC	NA	I6RSM4	Salmonella_phage	92.2	1.4e-227
AXR33030.1|988319_988532_+	cold-shock protein CspJ	NA	A0A1W6JNX5	Morganella_phage	70.0	3.9e-21
AXR36434.1|988542_988731_+	cold-shock protein	NA	NA	NA	NA	NA
AXR33031.1|988990_990169_-	porin OmpS1	NA	Q1MVN1	Enterobacteria_phage	57.0	1.1e-109
AXR33032.1|990818_991130_+	hypothetical protein	NA	NA	NA	NA	NA
AXR33033.1|991209_991905_+	phosphohydrolase	NA	A0A1D6Y7U0	Golden_Marseillevirus	28.2	2.1e-07
AXR33034.1|991978_993409_+	DNA cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	57.5	3.5e-105
>prophage 4
CP023468	Salmonella enterica subsp. enterica strain BAA-1586 chromosome, complete genome	4639823	1096227	1123966	4639823	transposase,terminase,tail,integrase,lysis	Escherichia_phage(26.09%)	42	1089623:1089637	1110045:1110059
1089623:1089637	attL	CAGGCCTGATAAAAA	NA	NA	NA	NA
AXR33144.1|1096227_1096458_-	DNA polymerase III subunit theta	NA	H9C187	Pectobacterium_phage	60.3	2.9e-14
AXR33145.1|1096595_1096970_+	hypothetical protein	NA	NA	NA	NA	NA
AXR33146.1|1096970_1097846_+	hypothetical protein	NA	NA	NA	NA	NA
AXR33147.1|1097862_1098216_+	DUF2511 domain-containing protein	NA	NA	NA	NA	NA
AXR33148.1|1098273_1098393_+	hypothetical protein	NA	NA	NA	NA	NA
AXR33149.1|1098588_1099668_-|integrase	integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	51.4	3.3e-100
AXR33150.1|1099648_1099921_-	excisionase	NA	A0A2H4J5E1	uncultured_Caudovirales_phage	39.7	1.8e-10
AXR36438.1|1099981_1100218_-	hypothetical protein	NA	NA	NA	NA	NA
AXR33151.1|1100508_1100694_-	hypothetical protein	NA	A0A0U2QL97	Escherichia_phage	59.6	2.9e-12
AXR33152.1|1100740_1101571_-	recombination and repair protein RecT	NA	A0A1P8DTF2	Proteus_phage	72.0	1.0e-104
AXR33153.1|1101563_1104254_-	exonuclease VIII	NA	Q9QF34	Lambdoid_phage	83.5	5.7e-117
AXR33154.1|1104394_1104730_-	hypothetical protein	NA	NA	NA	NA	NA
AXR33155.1|1104805_1105012_-	cell division inhibitor protein	NA	I6PBM9	Cronobacter_phage	45.6	3.0e-10
AXR33156.1|1105015_1105291_-	hypothetical protein	NA	NA	NA	NA	NA
AXR33157.1|1105551_1105731_+	hypothetical protein	NA	NA	NA	NA	NA
AXR33158.1|1105675_1105864_-	hypothetical protein	NA	NA	NA	NA	NA
AXR33159.1|1106174_1106600_-	transcriptional regulator	NA	K7PH71	Enterobacterial_phage	56.3	1.2e-13
AXR33160.1|1106696_1106951_+	XRE family transcriptional regulator	NA	K7PKH4	Enterobacteria_phage	59.4	1.2e-16
AXR33161.1|1106937_1107432_+	hypothetical protein	NA	NA	NA	NA	NA
AXR33162.1|1107855_1108092_-	hypothetical protein	NA	NA	NA	NA	NA
AXR33163.1|1108139_1108346_+	hypothetical protein	NA	A0A088CD36	Shigella_phage	58.0	3.1e-15
AXR33164.1|1108352_1109105_+	DNA replication protein DnaC	NA	A0A088CBP4	Shigella_phage	76.5	1.7e-103
AXR33165.1|1109122_1109500_+	DNA-binding protein	NA	A0A088CBK9	Shigella_phage	36.1	1.7e-14
AXR33166.1|1109802_1110309_+	hypothetical protein	NA	NA	NA	NA	NA
1110045:1110059	attR	CAGGCCTGATAAAAA	NA	NA	NA	NA
AXR33167.1|1111156_1111756_+	DUF1367 domain-containing protein	NA	A0A0U2RT94	Escherichia_phage	84.9	3.1e-100
AXR33168.1|1111752_1111947_+	hypothetical protein	NA	S4TNP0	Salmonella_phage	61.5	1.8e-12
AXR33169.1|1111971_1112238_+	hypothetical protein	NA	G8C7V5	Escherichia_phage	78.6	4.0e-31
AXR33170.1|1112247_1112610_+	antitermination protein	NA	Q777W5	Enterobacteria_phage	80.0	1.7e-53
AXR33171.1|1112730_1114788_-	SET domain-containing protein-lysine N-methyltransferase	NA	NA	NA	NA	NA
AXR33172.1|1115145_1115334_+	hypothetical protein	NA	NA	NA	NA	NA
AXR36439.1|1115537_1115840_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AXR33173.1|1115817_1116357_+	lysozyme	NA	S5MQK2	Escherichia_phage	73.6	1.3e-76
AXR36440.1|1116674_1117130_+|lysis	lysis protein	lysis	A0A0M4RD57	Salmonella_phage	78.8	8.0e-56
AXR33174.1|1117356_1117758_-	inhibitor of g-type lysozyme	NA	NA	NA	NA	NA
AXR33175.1|1118044_1118590_+|terminase	terminase small subunit	terminase	A0A0U2S671	Escherichia_phage	79.9	1.9e-56
AXR33176.1|1118561_1120745_+	hypothetical protein	NA	O64317	Escherichia_phage	69.1	1.3e-156
AXR33177.1|1120716_1121037_+	hypothetical protein	NA	A0A0M4QWS3	Salmonella_phage	78.3	4.9e-44
AXR33178.1|1121026_1121611_+|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	80.1	2.2e-82
AXR33179.1|1121707_1121908_-	phage virulence factor	NA	NA	NA	NA	NA
AXR33180.1|1122098_1122215_-|tail	phage tail protein	tail	NA	NA	NA	NA
AXR33181.1|1122477_1122603_+	arsenic transporter	NA	NA	NA	NA	NA
AXR33182.1|1122819_1123966_+|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	92.2	3.3e-146
>prophage 5
CP023468	Salmonella enterica subsp. enterica strain BAA-1586 chromosome, complete genome	4639823	1770055	1774466	4639823		Escherichia_phage(50.0%)	7	NA	NA
AXR33808.1|1770055_1770295_+	virulence protein MsgA	NA	K7P6H1	Enterobacteria_phage	88.6	8.5e-33
AXR33809.1|1770512_1770713_-	hypothetical protein	NA	NA	NA	NA	NA
AXR36469.1|1771174_1771984_+	cytolethal distending toxin subunit B	NA	A5LH53	Enterobacteria_phage	50.0	2.1e-62
AXR33810.1|1772056_1772434_+	DUF1353 domain-containing protein	NA	I1TQ41	Pseudomonas_phage	38.4	2.2e-14
AXR33811.1|1772581_1773124_-	hypothetical protein	NA	A0A0U2S643	Escherichia_phage	67.0	6.2e-71
AXR33812.1|1773307_1774036_-	pertussis toxin-like subunit ArtA	NA	A0A0U2KD26	Escherichia_phage	52.5	1.6e-61
AXR33813.1|1774052_1774466_-	subtilase cytotoxin subunit B	NA	A0A0U2KD34	Escherichia_phage	37.7	5.5e-19
>prophage 6
CP023468	Salmonella enterica subsp. enterica strain BAA-1586 chromosome, complete genome	4639823	1779654	1803016	4639823	tail,integrase,holin,transposase	Salmonella_phage(61.54%)	33	1779602:1779617	1801713:1801728
1779602:1779617	attL	TAATAAAAACGGGAAC	NA	NA	NA	NA
AXR33817.1|1779654_1779867_-	isocitrate dehydrogenase	NA	Q77Z09	Phage_21	92.6	1.5e-20
AXR33818.1|1780120_1780792_+	SOS response-associated peptidase	NA	A0A2H4J5W2	uncultured_Caudovirales_phage	59.9	4.5e-79
AXR33819.1|1781255_1782263_+	non-LEE encoded effector protein NleB	NA	Q8HAB2	Salmonella_phage	89.3	1.8e-177
AXR33820.1|1782545_1782947_-|tail	phage tail protein	tail	A0A1B0V844	Salmonella_phage	83.3	3.4e-58
AXR33821.1|1783272_1784420_-|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	92.2	3.3e-146
AXR33822.1|1784560_1785064_-	hypothetical protein	NA	NA	NA	NA	NA
AXR33823.1|1785166_1785709_-	hypothetical protein	NA	NA	NA	NA	NA
AXR33824.1|1785705_1786320_-	endolysin	NA	Q8HA86	Salmonella_phage	92.2	1.6e-107
AXR33825.1|1786319_1786601_-|holin	phage holin family protein	holin	K7PKN9	Enterobacterial_phage	80.6	2.6e-36
AXR33826.1|1786587_1786977_-	hypothetical protein	NA	K7PHB9	Enterobacterial_phage	71.8	8.1e-41
AXR33827.1|1787065_1787638_-	hypothetical protein	NA	NA	NA	NA	NA
AXR33828.1|1787650_1788724_-	hypothetical protein	NA	NA	NA	NA	NA
AXR33829.1|1788773_1789526_-	antitermination protein	NA	A0A192Y5X6	Salmonella_phage	92.4	6.4e-135
AXR36470.1|1789539_1790529_-	hypothetical protein	NA	A0A1C9IHZ5	Salmonella_phage	98.2	3.4e-192
AXR33830.1|1790536_1791442_-	DNA-binding protein	NA	A0A192Y6F8	Salmonella_phage	99.0	8.2e-161
AXR33831.1|1791413_1791803_-	RusA family crossover junction endodeoxyribonuclease	NA	A0A1C9IIA0	Salmonella_phage	86.0	2.4e-61
AXR33832.1|1791799_1792453_-	phage N-6-adenine-methyltransferase	NA	A5LH72	Enterobacteria_phage	88.4	1.6e-113
AXR33833.1|1792452_1792977_-	hypothetical protein	NA	Q8HA95	Salmonella_phage	97.1	7.2e-93
AXR33834.1|1792936_1793911_-	helix-turn-helix domain-containing protein	NA	U5P0A0	Shigella_phage	84.6	2.9e-127
AXR33835.1|1793907_1794132_-	hypothetical protein	NA	A0A1C9II64	Salmonella_phage	100.0	3.3e-39
AXR33836.1|1794128_1795283_-	peptidase	NA	A0A1C9IHV9	Salmonella_phage	87.5	3.0e-184
AXR33837.1|1795279_1795834_-	hypothetical protein	NA	A0A1C9II13	Salmonella_phage	99.5	2.0e-101
AXR33838.1|1795862_1796087_-	XRE family transcriptional regulator	NA	A0A1C9IHV8	Salmonella_phage	100.0	1.9e-34
AXR33839.1|1796025_1796211_-	amino acid permease	NA	NA	NA	NA	NA
AXR33840.1|1796184_1796880_+	transcriptional regulator	NA	Q8HAA0	Salmonella_phage	99.1	2.3e-126
AXR33841.1|1797088_1797397_+	hypothetical protein	NA	I6PDF6	Cronobacter_phage	80.0	5.0e-09
AXR33842.1|1797334_1797673_-	hypothetical protein	NA	NA	NA	NA	NA
AXR33843.1|1798209_1798581_+	hypothetical protein	NA	Q8HAA1	Salmonella_phage	99.2	7.2e-63
AXR33844.1|1798638_1799466_+	DUF2303 domain-containing protein	NA	Q8HAA2	Salmonella_phage	98.2	1.6e-150
AXR33845.1|1799601_1800141_+	hypothetical protein	NA	A0A192Y8M4	Salmonella_phage	100.0	2.6e-98
AXR33846.1|1800283_1800520_+	excisionase	NA	NA	NA	NA	NA
AXR33847.1|1800509_1801652_+|integrase	integrase	integrase	O21929	Phage_21	79.7	1.2e-172
AXR33848.1|1801765_1803016_-	isocitrate dehydrogenase (NADP(+))	NA	Q77Z09	Phage_21	90.7	1.1e-19
1801713:1801728	attR	TAATAAAAACGGGAAC	NA	NA	NA	NA
>prophage 7
CP023468	Salmonella enterica subsp. enterica strain BAA-1586 chromosome, complete genome	4639823	2601857	2618333	4639823	protease,integrase,transposase	Salmonella_phage(43.48%)	25	2596820:2596833	2625119:2625132
2596820:2596833	attL	TTTTCAATGAACTG	NA	NA	NA	NA
AXR34581.1|2601857_2603004_+|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	92.2	3.3e-146
AXR34582.1|2603413_2603560_-	hypothetical protein	NA	A0A075B8K7	Enterobacteria_phage	100.0	1.5e-19
AXR34583.1|2603594_2603876_-	hypothetical protein	NA	Q76H54	Enterobacteria_phage	100.0	4.3e-44
AXR34584.1|2603986_2604202_-	XRE family transcriptional regulator	NA	A0A0M4RTV8	Salmonella_phage	100.0	4.1e-34
AXR36501.1|2604320_2604983_+	LexA family transcriptional repressor	NA	A0A0M4QWY1	Salmonella_phage	100.0	1.7e-126
AXR34585.1|2605337_2605670_+	hypothetical protein	NA	A0A1R3Y5R1	Salmonella_virus	93.6	4.8e-50
AXR34586.1|2605702_2605903_+	restriction endonuclease	NA	A0A1R3Y5S4	Salmonella_virus	98.5	3.0e-31
AXR34587.1|2605939_2606563_+	hypothetical protein	NA	K7PKU5	Enterobacteria_phage	97.1	2.1e-107
AXR34588.1|2606600_2606924_+	hypothetical protein	NA	NA	NA	NA	NA
AXR36502.1|2607240_2607414_+|protease	protease FtsH-inhibitory lysogeny factor CIII	protease	I6R987	Salmonella_phage	98.1	2.0e-23
AXR34589.1|2607394_2607583_+	protein kil	NA	I6S647	Salmonella_phage	100.0	3.7e-31
AXR34590.1|2607712_2608330_+	recombinase	NA	A0A0N7CFJ3	Salmonella_phage	100.0	3.3e-105
AXR34591.1|2608329_2608614_+	sigma-70 family RNA polymerase sigma factor	NA	Q76H41	Enterobacteria_phage	97.9	2.6e-44
AXR34592.1|2608660_2608954_+	RecBCD nuclease inhibitor	NA	A0A0N7CAQ6	Salmonella_phage	96.9	4.7e-49
AXR36503.1|2608964_2609135_+	DUF2737 domain-containing protein	NA	A0A0N7CAQ8	Salmonella_phage	100.0	3.5e-25
AXR34593.1|2609583_2609829_+	hypothetical protein	NA	A0A1V0E5L1	Salmonella_phage	93.7	7.1e-35
AXR34594.1|2610790_2611006_+	hypothetical protein	NA	NA	NA	NA	NA
AXR34595.1|2611009_2611435_+	HNH endonuclease	NA	C6ZR29	Salmonella_phage	84.6	3.0e-65
AXR34596.1|2612118_2612298_+	Eag protein	NA	A0A075B8F7	Enterobacteria_phage	100.0	1.9e-29
AXR34597.1|2612398_2613034_+	Eac protein	NA	A0A075B8I7	Enterobacteria_phage	99.5	1.3e-120
AXR34598.1|2613036_2613387_+	DNA-binding protein	NA	A0A075B8K2	Enterobacteria_phage	100.0	6.4e-61
AXR36504.1|2613758_2614427_+|integrase	site-specific integrase	integrase	A0A220NQU7	Salmonella_phage	97.7	1.8e-125
AXR34599.1|2614632_2615883_-	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	47.7	8.9e-97
AXR34600.1|2615894_2616998_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	39.8	6.9e-61
AXR34601.1|2617280_2618333_+	phosphoporin PhoE	NA	Q1MVN1	Enterobacteria_phage	58.8	1.5e-113
2625119:2625132	attR	CAGTTCATTGAAAA	NA	NA	NA	NA
>prophage 8
CP023468	Salmonella enterica subsp. enterica strain BAA-1586 chromosome, complete genome	4639823	2695494	2788680	4639823	transposase,tRNA,tail,integrase,plate	Salmonella_phage(65.71%)	79	2767928:2767944	2798510:2798526
AXR34668.1|2695494_2695989_+|plate	type VI secretion system baseplate subunit TssE	plate	NA	NA	NA	NA
AXR34669.1|2696004_2697888_+|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
AXR34670.1|2697884_2698880_+|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
AXR34671.1|2698890_2699946_+	cytoplasmic protein	NA	NA	NA	NA	NA
AXR36511.1|2700476_2701208_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	39.0	9.9e-40
AXR34672.1|2701271_2701739_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	58.9	4.7e-51
AXR34673.1|2701735_2702458_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AXR34674.1|2702492_2703248_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
AXR34675.1|2703319_2704687_+	murein transglycosylase D	NA	A0A0A7NU10	Lactobacillus_phage	33.0	1.4e-10
AXR34676.1|2704742_2705513_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AXR34677.1|2705590_2706391_-	EEP domain-containing protein	NA	NA	NA	NA	NA
AXR34678.1|2706522_2707698_-	MFS transporter	NA	NA	NA	NA	NA
AXR34679.1|2707802_2708774_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXR34680.1|2708739_2709543_-	2,5-didehydrogluconate reductase DkgB	NA	A0A1V0SDE7	Indivirus	35.8	3.2e-39
AXR34681.1|2715108_2715309_+	hypothetical protein	NA	NA	NA	NA	NA
AXR34682.1|2715504_2718078_-	ATP-dependent chaperone ClpB	NA	H6X3M6	Enterobacteria_phage	35.6	9.0e-128
AXR34683.1|2718207_2718939_-	hypothetical protein	NA	NA	NA	NA	NA
AXR34684.1|2718935_2719916_-	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA	NA
AXR34685.1|2720047_2720785_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
AXR34686.1|2721056_2721395_+	ribosomal subunit interface protein	NA	NA	NA	NA	NA
AXR34687.1|2721645_2722806_+	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA	NA
AXR34688.1|2722766_2723675_-	gluconolactonase	NA	NA	NA	NA	NA
AXR34689.1|2723732_2724854_-	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA	NA
AXR34690.1|2724863_2725934_-	phospho-2-dehydro-3-deoxyheptonate aldolase Tyr-sensitive	NA	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	51.8	2.4e-90
AXR34691.1|2726373_2726892_+	DUF4154 domain-containing protein	NA	NA	NA	NA	NA
AXR34692.1|2726884_2728105_+	diguanylate cyclase	NA	A0A2K8I9Y5	Pseudomonas_phage	37.0	1.7e-07
AXR34693.1|2728261_2728609_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
AXR34694.1|2728649_2729417_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
AXR34695.1|2729461_2730010_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
AXR34696.1|2730028_2730277_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
AXR34697.1|2730620_2731982_-	signal recognition particle protein	NA	NA	NA	NA	NA
AXR34698.1|2732147_2732939_+	inner membrane protein YpjD	NA	NA	NA	NA	NA
AXR34699.1|2733003_2734245_+	magnesium/cobalt efflux protein	NA	NA	NA	NA	NA
AXR34700.1|2734365_2734971_+	cytoplasmic protein	NA	NA	NA	NA	NA
AXR34701.1|2735005_2735596_-	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
AXR34702.1|2735592_2735787_-	molecular chaperone GrpE	NA	NA	NA	NA	NA
AXR34703.1|2735718_2736597_+	NAD(+) kinase	NA	NA	NA	NA	NA
AXR34704.1|2736682_2738344_+	DNA repair protein RecN	NA	NA	NA	NA	NA
AXR34705.1|2738492_2738831_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA	NA
AXR34706.1|2738991_2739282_-	RnfH family protein	NA	NA	NA	NA	NA
AXR34707.1|2739271_2739748_-	ubiquinone-binding protein	NA	NA	NA	NA	NA
AXR36512.1|2739897_2740380_+	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	47.4	5.2e-29
AXR34708.1|2740994_2752469_+	Ig-like domain repeat protein	NA	NA	NA	NA	NA
AXR34709.1|2752533_2753943_+	type I secretion protein TolC	NA	NA	NA	NA	NA
AXR34710.1|2753939_2756120_+	type I secretion system permease/ATPase	NA	F2Y302	Organic_Lake_phycodnavirus	34.0	9.9e-19
AXR36513.1|2756127_2757291_+	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA	NA
AXR36514.1|2757841_2758060_-	levansucrase regulator	NA	Q53ZE7	Salmonella_virus	100.0	2.1e-38
AXR34711.1|2758128_2759229_-	late control protein D	NA	A0A1S6KZZ5	Salmonella_phage	98.6	4.5e-193
AXR34712.1|2759225_2759711_-|tail	phage tail protein	tail	E5G6Q2	Salmonella_phage	99.2	8.3e-67
AXR34713.1|2762506_2762626_-|tail	GpE family phage tail protein	tail	E5G6Q0	Salmonella_phage	97.4	6.7e-15
AXR34714.1|2762640_2762943_-	hypothetical protein	NA	A0A1S6KZZ9	Salmonella_phage	96.0	2.3e-43
AXR34715.1|2762997_2763513_-|tail	phage major tail tube protein	tail	A0A1S6L002	Salmonella_phage	97.7	6.7e-91
AXR34716.1|2763522_2764695_-|tail	phage tail protein	tail	A0A1S6KZY7	Salmonella_phage	99.0	4.1e-221
AXR34717.1|2764797_2765016_-	Hin recombinase	NA	A0A1S6L009	Salmonella_phage	90.3	1.8e-29
AXR34718.1|2765230_2765953_+	SPI-1 type III secretion system guanine nucleotide exchange factor SopE	NA	NA	NA	NA	NA
AXR34719.1|2766149_2766557_-|tail	phage tail protein	tail	A0A1B0V844	Salmonella_phage	85.0	2.4e-59
AXR36515.1|2766563_2767226_-|tail	phage tail protein	tail	A0A1B0V7G4	Salmonella_phage	51.9	1.2e-39
AXR34720.1|2767430_2768003_+	DNA-invertase Hin	NA	A0A0A7NPV4	Enterobacteria_phage	72.1	2.0e-67
2767928:2767944	attL	TATTATTTTTGGTATTG	NA	NA	NA	NA
AXR34721.1|2768366_2769887_+	flagellin FliC	NA	NA	NA	NA	NA
AXR34722.1|2769954_2770494_+	phase 1 flagellin gene repressor FljA	NA	NA	NA	NA	NA
AXR34723.1|2770855_2771053_+	hypothetical protein	NA	NA	NA	NA	NA
AXR34724.1|2771159_2772185_-|integrase	integrase	integrase	A0A1S6L016	Salmonella_phage	99.7	6.4e-202
AXR34725.1|2772188_2772821_-	phage repressor protein	NA	A0A1S6KZZ7	Salmonella_phage	100.0	1.1e-116
AXR34726.1|2773214_2773724_+	hypothetical protein	NA	A0A1S6L008	Salmonella_phage	98.8	6.8e-88
AXR34727.1|2773731_2773965_+	DUF2724 domain-containing protein	NA	E5G6L4	Salmonella_phage	59.1	3.6e-12
AXR34728.1|2773912_2774371_-	hypothetical protein	NA	NA	NA	NA	NA
AXR34729.1|2774590_2774932_+	hypothetical protein	NA	E5G6L5	Salmonella_phage	85.0	4.2e-49
AXR34730.1|2774999_2775233_+	hypothetical protein	NA	A0A1S6L021	Salmonella_phage	83.1	4.4e-26
AXR34731.1|2775232_2775460_+	hypothetical protein	NA	A0A1S6L007	Salmonella_phage	93.3	1.3e-35
AXR34732.1|2775456_2776314_+	DNA adenine methylase	NA	A0A1S6L011	Salmonella_phage	80.7	9.3e-130
AXR34733.1|2776304_2778713_+	endonuclease	NA	A0A1S6L028	Salmonella_phage	95.3	0.0e+00
AXR34734.1|2778771_2779919_-|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	92.2	3.3e-146
AXR34735.1|2779945_2780539_+|plate	baseplate assembly protein	plate	A0A1S6KZX7	Salmonella_phage	96.2	1.1e-102
AXR34736.1|2780535_2780895_+|plate	baseplate assembly protein	plate	E5G6N7	Salmonella_phage	95.8	4.0e-58
AXR34737.1|2780881_2781790_+|plate	baseplate assembly protein	plate	E5G6N8	Salmonella_phage	94.7	5.9e-151
AXR34738.1|2781782_2782388_+|tail	phage tail protein I	tail	E5G6N9	Salmonella_phage	97.5	1.1e-113
AXR34739.1|2783540_2783723_+	hypothetical protein	NA	NA	NA	NA	NA
AXR34740.1|2783827_2784943_+	glycosyl transferase	NA	NA	NA	NA	NA
AXR34741.1|2785023_2788680_+	multidrug ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	28.8	4.7e-45
2798510:2798526	attR	TATTATTTTTGGTATTG	NA	NA	NA	NA
>prophage 9
CP023468	Salmonella enterica subsp. enterica strain BAA-1586 chromosome, complete genome	4639823	4501583	4507549	4639823	transposase	uncultured_Caudovirales_phage(33.33%)	6	NA	NA
AXR36285.1|4501583_4501826_+	type II toxin-antitoxin system antitoxin, RelB/DinJ family	NA	A0A2H4JBG1	uncultured_Caudovirales_phage	51.2	5.6e-16
AXR36286.1|4501815_4502100_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A2H4JBF4	uncultured_Caudovirales_phage	70.2	8.6e-32
AXR36287.1|4502103_4502568_-	anaerobic ribonucleoside-triphosphate reductase-activating protein	NA	K4F9T1	Cronobacter_phage	55.8	2.7e-51
AXR36288.1|4502784_4504923_-	anaerobic ribonucleoside-triphosphate reductase	NA	A0A2I7QNQ7	Vibrio_phage	64.9	6.3e-268
AXR36289.1|4505457_4506604_+|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	92.2	3.3e-146
AXR36290.1|4506601_4507549_-|transposase	IS110 family transposase	transposase	A0A1S7J231	Thermus_phage	29.7	2.4e-22
