assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003429405.1_ASM342940v1	CP023008	Pediococcus pentosaceus strain SS1-3 chromosome, complete genome	2	480202-481491	1,2,1,2	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	cas9,cas1,cas2,csn2,cas3	csa3,cas9,cas1,cas2,csn2,cas3,DEDDh,WYL,DinG	Type II-A,Type II-C,Type II-B	GTTTCAGAAGAGTGTTAAATCAATAAGTTCAAGTAC,GTTTCAGAAGAGTGTTAAATCAATAAGTTCAAGTAC,GTTTCAGAAGAGTGTTAAATCAATAAGTTCAAGTAC,GTTTCAGAAGAGTGTTAAATCAATAAGTTCAAGTAC	36,36,36,36	0	0	NA	NA	NA:NA:NA:NA	17,19,19,17	19	TypeII-A,TypeII-C,TypeII-B	csa3,cas9,cas1,cas2,csn2,cas3,DEDDh,WYL,DinG	NA|131aa|up_9|CP023008.1_466909_467302_-,NA|219aa|up_7|CP023008.1_468388_469045_+,NA	NA|131aa|up_9|CP023008.1_466909_467302_-	NA	NA|104aa|up_8|CP023008.1_467464_467776_+	pfam13560, HTH_31, Helix-turn-helix domain	NA|219aa|up_7|CP023008.1_468388_469045_+	NA	NA|467aa|up_6|CP023008.1_469177_470578_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|845aa|up_5|CP023008.1_470626_473161_+	cd09601, M1_APN-Q_like, Peptidase M1 aminopeptidase N catalytic domain family which includes aminopeptidase N (APN), aminopeptidase Q (APQ), tricorn interacting factor F3, and endoplasmic reticulum aminopeptidase 1 (ERAP1)	NA|209aa|up_4|CP023008.1_473210_473837_-	pfam09726, Macoilin, Macoilin family	cas9|1360aa|up_3|CP023008.1_474028_478108_+	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9	cas1|302aa|up_2|CP023008.1_478315_479221_+	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas2|102aa|up_1|CP023008.1_479198_479504_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	csn2|224aa|up_0|CP023008.1_479500_480172_+	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2	NA|217aa|down_0|CP023008.1_481618_482269_-	pfam02517, Abi, CAAX protease self-immunity	NA|95aa|down_1|CP023008.1_482453_482738_+	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|540aa|down_2|CP023008.1_482765_484385_+	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|611aa|down_3|CP023008.1_484728_486561_+	pfam13520, AA_permease_2, Amino acid permease	NA|387aa|down_4|CP023008.1_486711_487872_+	cd06853, GT_WecA_like, This subfamily contains Escherichia coli WecA, Bacillus subtilis TagO and related proteins	NA|218aa|down_5|CP023008.1_487886_488540_-	pfam01205, UPF0029, Uncharacterized protein family UPF0029	cas3|440aa|down_6|CP023008.1_488572_489892_+	COG4098, comFA, Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]	NA|144aa|down_7|CP023008.1_490131_490563_+	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only]	NA|185aa|down_8|CP023008.1_490693_491248_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|787aa|down_9|CP023008.1_491408_493769_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed
GCA_003429405.1_ASM342940v1	CP023008	Pediococcus pentosaceus strain SS1-3 chromosome, complete genome	3	638535-638640	3	CRISPRCasFinder	no		csa3,cas9,cas1,cas2,csn2,cas3,DEDDh,WYL,DinG	Orphan	TTAGCTCAGTTGGGAGAGCATCTG	24	0	0	NA	NA	NA	1	1	Orphan	csa3,cas9,cas1,cas2,csn2,cas3,DEDDh,WYL,DinG	NA|63aa|up_6|CP023008.1_626395_626584_+,NA|244aa|down_1|CP023008.1_642401_643133_-	NA|282aa|up_9|CP023008.1_622709_623555_+	pfam01925, TauE, Sulfite exporter TauE/SafE	NA|121aa|up_8|CP023008.1_623554_623917_+	pfam07843, DUF1634, Protein of unknown function (DUF1634)	NA|740aa|up_7|CP023008.1_623971_626191_-	COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]	NA|63aa|up_6|CP023008.1_626395_626584_+	NA	NA|89aa|up_5|CP023008.1_626729_626996_+	PRK13780, PRK13780, phosphocarrier protein HPr; Provisional	NA|575aa|up_4|CP023008.1_626995_628720_+	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|258aa|up_3|CP023008.1_628792_629566_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|392aa|up_2|CP023008.1_629655_630831_+	cd03817, GT4_UGDG-like, UDP-Glc:1,2-diacylglycerol 3-a-glucosyltransferase and similar proteins	NA|339aa|up_1|CP023008.1_630880_631897_+	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|345aa|up_0|CP023008.1_631910_632945_+	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|568aa|down_0|CP023008.1_640628_642332_+	TIGR02720, Pyruvate_oxidase, pyruvate oxidase	NA|244aa|down_1|CP023008.1_642401_643133_-	NA	NA|397aa|down_2|CP023008.1_643305_644496_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|489aa|down_3|CP023008.1_644570_646037_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|188aa|down_4|CP023008.1_646083_646647_-	pfam06962, rRNA_methylase, Putative rRNA methylase	NA|211aa|down_5|CP023008.1_646639_647272_-	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|806aa|down_6|CP023008.1_647617_650035_+	PRK00390, leuS, leucyl-tRNA synthetase; Validated	NA|562aa|down_7|CP023008.1_650238_651924_+	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins	NA|240aa|down_8|CP023008.1_651932_652652_+	cd02553, PseudoU_synth_RsuA, Pseudouridine synthase, Escherichia coli RsuA like	NA|280aa|down_9|CP023008.1_652674_653514_-	cd01171, YXKO-related, B
