assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003429365.1_ASM342936v1	CP023475	Salmonella enterica subsp. enterica serovar Enteritidis strain FORC_075 chromosome, complete genome	1	940997-941636	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAAC,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAAC	27,29,27	0	0	NA	NA	I-E:I-E:I-E	9,10,10	10	TypeI-E	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	NA,NA	NA|179aa|up_9|CP023475.1_929543_930080_-	PRK15260, PRK15260, fimbrial protein SteF; Provisional	NA|157aa|up_8|CP023475.1_930076_930547_-	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional	NA|169aa|up_7|CP023475.1_930561_931068_-	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional	NA|258aa|up_6|CP023475.1_931087_931861_-	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional	NA|882aa|up_5|CP023475.1_931873_934519_-	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein	NA|196aa|up_4|CP023475.1_934652_935240_-	PRK15261, PRK15261, fimbrial protein SteA; Provisional	NA|254aa|up_3|CP023475.1_935885_936647_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_2|CP023475.1_936874_938512_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_1|CP023475.1_938594_939893_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_0|CP023475.1_940028_940700_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|228aa|down_0|CP023475.1_941848_942532_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|down_1|CP023475.1_942619_942982_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|down_2|CP023475.1_943405_945205_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_3|CP023475.1_945204_946917_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_4|CP023475.1_947018_947753_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|361aa|down_5|CP023475.1_947840_948923_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|851aa|down_6|CP023475.1_949348_951901_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|519aa|down_7|CP023475.1_951912_953469_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|185aa|down_8|CP023475.1_953465_954020_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|353aa|down_9|CP023475.1_954033_955092_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI
GCA_003429365.1_ASM342936v1	CP023475	Salmonella enterica subsp. enterica serovar Enteritidis strain FORC_075 chromosome, complete genome	2	957788-958304	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAAC,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	27,29,29	0	0	NA	NA	I-E:I-E:I-E	8,8,8	8	TypeI-E	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	NA,NA	NA|245aa|up_9|CP023475.1_947018_947753_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|361aa|up_8|CP023475.1_947840_948923_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|851aa|up_7|CP023475.1_949348_951901_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|519aa|up_6|CP023475.1_951912_953469_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|185aa|up_5|CP023475.1_953465_954020_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|353aa|up_4|CP023475.1_954033_955092_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|CP023475.1_955102_955849_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|CP023475.1_955830_956481_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|307aa|up_1|CP023475.1_956477_957398_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|96aa|up_0|CP023475.1_957403_957691_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|349aa|down_0|CP023475.1_958318_959365_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|CP023475.1_959615_960524_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|CP023475.1_960533_961973_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|CP023475.1_961959_962565_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|93aa|down_4|CP023475.1_962660_962939_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|CP023475.1_963129_963441_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|CP023475.1_963459_964170_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|CP023475.1_964169_964649_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|CP023475.1_964645_965695_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|CP023475.1_965675_966437_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCA_003429365.1_ASM342936v1	CP023476	Salmonella enterica subsp. enterica serovar Enteritidis strain FORC_075 plasmid pFORC75_2, complete sequence	1	33430-33549	1	CRISPRCasFinder	no			Orphan	TGAAAGGTGGATGGGTACGCACTGAAAGGTGGATAGGTACGCA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	NA|112aa|up_9|CP023476.1_29730_30066_+,NA|91aa|up_8|CP023476.1_29931_30204_-,NA|60aa|up_7|CP023476.1_30435_30615_-,NA|110aa|up_6|CP023476.1_30657_30987_-,NA|82aa|up_4|CP023476.1_31284_31530_-,NA|108aa|up_3|CP023476.1_31577_31901_-,NA|52aa|up_0|CP023476.1_32828_32984_-,NA	NA|112aa|up_9|CP023476.1_29730_30066_+	NA	NA|91aa|up_8|CP023476.1_29931_30204_-	NA	NA|60aa|up_7|CP023476.1_30435_30615_-	NA	NA|110aa|up_6|CP023476.1_30657_30987_-	NA	NA|72aa|up_5|CP023476.1_31079_31295_-	TIGR03830, transcriptional_regulator_XRE_family, putative zinc finger/helix-turn-helix protein, YgiT family	NA|82aa|up_4|CP023476.1_31284_31530_-	NA	NA|108aa|up_3|CP023476.1_31577_31901_-	NA	NA|94aa|up_2|CP023476.1_32046_32328_-	COG2026, RelE, Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning]	NA|84aa|up_1|CP023476.1_32317_32569_-	PRK02854, PRK02854, primosomal protein DnaT	NA|52aa|up_0|CP023476.1_32828_32984_-	NA	NA|280aa|down_0|CP023476.1_33801_34641_+	pfam01051, Rep_3, Initiator Replication protein	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA
