assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003427415.1_ASM342741v1	CP018456	Shewanella algae strain CCU101 chromosome, complete genome	1	437859-437921	1	CRISPRCasFinder	no	DinG	csa3,DinG,cas3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,WYL,DEDDh,RT	Type IV-A	CATCAAAAAGATATGGCTGTCCT	23	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,cas3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,WYL,DEDDh,RT	NA|67aa|up_2|CP018456.1_434158_434359_-,NA|81aa|down_0|CP018456.1_438682_438925_-,NA|358aa|down_1|CP018456.1_438954_440028_-,NA|67aa|down_9|CP018456.1_450608_450809_-	NA|368aa|up_9|CP018456.1_425449_426553_+	PRK10794, PRK10794, rod shape-determining protein RodA	NA|332aa|up_8|CP018456.1_426564_427560_+	TIGR02282, Membrane-bound_lytic_murein_transglycosylase_B, lytic murein transglycosylase B	NA|264aa|up_7|CP018456.1_427546_428338_+	COG0797, RlpA, Lipoproteins [Cell envelope biogenesis, outer membrane]	NA|394aa|up_6|CP018456.1_428466_429648_+	PRK10793, PRK10793, D-alanyl-D-alanine carboxypeptidase fraction A; Provisional	DinG|434aa|up_5|CP018456.1_429920_431222_+	PRK10590, PRK10590, ATP-dependent RNA helicase RhlE; Provisional	NA|70aa|up_4|CP018456.1_431316_431526_-	pfam13467, RHH_4, Ribbon-helix-helix domain	NA|186aa|up_3|CP018456.1_431978_432536_-	cd03169, GATase1_PfpI_1, Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus	NA|67aa|up_2|CP018456.1_434158_434359_-	NA	NA|338aa|up_1|CP018456.1_434384_435398_-	pfam06189, 5-nucleotidase, 5'-nucleotidase	NA|306aa|up_0|CP018456.1_436478_437396_+	pfam13737, DDE_Tnp_1_5, Transposase DDE domain	NA|81aa|down_0|CP018456.1_438682_438925_-	NA	NA|358aa|down_1|CP018456.1_438954_440028_-	NA	NA|611aa|down_2|CP018456.1_442099_443932_-	COG2268, COG2268, Uncharacterized protein conserved in bacteria [Function unknown]	NA|211aa|down_3|CP018456.1_443958_444591_-	pfam07290, DUF1449, Protein of unknown function (DUF1449)	NA|162aa|down_4|CP018456.1_446598_447084_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|117aa|down_5|CP018456.1_447087_447438_+	pfam04342, DMT_6, Putative member of DMT superfamily (DUF486)	NA|84aa|down_6|CP018456.1_447464_447716_+	pfam11173, DUF2960, Protein of unknown function (DUF2960)	NA|170aa|down_7|CP018456.1_447741_448251_+	pfam06271, RDD, RDD family	NA|353aa|down_8|CP018456.1_448445_449504_-	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|67aa|down_9|CP018456.1_450608_450809_-	NA
GCA_003427415.1_ASM342741v1	CP018456	Shewanella algae strain CCU101 chromosome, complete genome	2	1099894-1102981	2,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas6f,cas7f,cas5f,cas8f,cas3f,cas1,WYL	csa3,DinG,cas3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,WYL,DEDDh,RT	Type I-F	TTTCTAAGCTGCCTGGGCGGCAGTGAAC,TTTCTAAGCTGCCTGGGCGGCAGTGAAC,TTTCTAAGCTGCCTGGGCGGCAGTGAAC	28,28,28	0	0	NA	NA	I-F:I-F:I-F	51,51,23	51	TypeI-F	csa3,DinG,cas3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,WYL,DEDDh,RT	NA,NA	NA|156aa|up_9|CP018456.1_1080669_1081137_-	PRK09514, zntR, Zn(2+)-responsive transcriptional regulator	NA|530aa|up_8|CP018456.1_1081411_1083001_+	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|432aa|up_7|CP018456.1_1083135_1084431_+	PRK00885, PRK00885, phosphoribosylamine--glycine ligase; Provisional	NA|243aa|up_6|CP018456.1_1084548_1085277_-	PRK13552, frdB, fumarate reductase iron-sulfur subunit; Provisional	NA|222aa|up_5|CP018456.1_1087365_1088031_-	cd00581, QFR_TypeB_TM, Quinol:fumarate reductase (QFR) Type B subfamily, transmembrane subunit;  QFR couples the reduction of fumarate to succinate to the oxidation of quinol to quinone, the opposite reaction to that catalyzed by the related protein, succinate:quinone oxidoreductase (SQR)	NA|242aa|up_4|CP018456.1_1088161_1088887_-	PRK13554, PRK13554, fumarate reductase cytochrome b-556 subunit; Provisional	NA|294aa|up_3|CP018456.1_1089238_1090120_+	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|324aa|up_2|CP018456.1_1090272_1091244_+	PRK10415, PRK10415, tRNA-dihydrouridine synthase B; Provisional	NA|102aa|up_1|CP018456.1_1091258_1091564_+	PRK00430, fis, DNA-binding transcriptional regulator Fis	NA|762aa|up_0|CP018456.1_1097489_1099775_+	TIGR02073, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein 1C	cas6f|213aa|down_0|CP018456.1_1103131_1103770_-	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f	cas7f|344aa|down_1|CP018456.1_1103779_1104811_-	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas5f|296aa|down_2|CP018456.1_1104822_1105710_-	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas8f|421aa|down_3|CP018456.1_1105706_1106969_-	pfam09611, Cas_Csy1, CRISPR-associated protein (Cas_Csy1)	cas3f|1126aa|down_4|CP018456.1_1106983_1110361_-	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas1|330aa|down_5|CP018456.1_1110357_1111347_-	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	WYL|264aa|down_6|CP018456.1_1111460_1112252_-	COG2378, COG2378, Predicted transcriptional regulator [Transcription]	NA|950aa|down_7|CP018456.1_1112512_1115362_-	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only]	NA|782aa|down_8|CP018456.1_1117187_1119533_-	COG4771, FepA, Outer membrane receptor for ferrienterochelin and colicins [Inorganic ion transport and metabolism]	NA|238aa|down_9|CP018456.1_1119882_1120596_+	pfam11932, DUF3450, Protein of unknown function (DUF3450)
GCA_003427415.1_ASM342741v1	CP018456	Shewanella algae strain CCU101 chromosome, complete genome	3	3500227-3500364	3	CRISPRCasFinder	no		csa3,DinG,cas3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,WYL,DEDDh,RT	Orphan	CACAGCCTTGACTAGGCTTTGAAATACCCATCAAAGCTCAGTCGA	45	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,cas3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,WYL,DEDDh,RT	NA,NA|330aa|down_0|CP018456.1_3500821_3501811_+,NA|97aa|down_1|CP018456.1_3502268_3502559_-,NA|212aa|down_2|CP018456.1_3502623_3503259_+,NA|73aa|down_3|CP018456.1_3503443_3503662_-	NA|201aa|up_9|CP018456.1_3490042_3490645_-	PRK05670, PRK05670, anthranilate synthase component II; Provisional	NA|520aa|up_8|CP018456.1_3490641_3492201_-	PRK13564, PRK13564, anthranilate synthase component 1	NA|287aa|up_7|CP018456.1_3492556_3493417_+	COG0613, COG0613, Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only]	NA|207aa|up_6|CP018456.1_3493413_3494034_+	PRK11630, PRK11630, threonylcarbamoyl-AMP synthase	NA|264aa|up_5|CP018456.1_3494111_3494903_+	COG1354, scpA, Rec8/ScpA/Scc1-like protein (kleisin family) [Replication,    recombination, and repair]	NA|197aa|up_4|CP018456.1_3494914_3495505_+	pfam04079, SMC_ScpB, Segregation and condensation complex subunit ScpB	NA|291aa|up_3|CP018456.1_3495505_3496378_+	PRK10700, PRK10700, 23S rRNA pseudouridine(2605) synthase RluB	NA|322aa|up_2|CP018456.1_3496661_3497627_+	cd15482, Sialidase_non-viral, Non-viral sialidases	NA|292aa|up_1|CP018456.1_3497920_3498796_-	smart00953, RES, RES domain	NA|365aa|up_0|CP018456.1_3498954_3500049_-	pfam13808, DDE_Tnp_1_assoc, DDE_Tnp_1-associated	NA|330aa|down_0|CP018456.1_3500821_3501811_+	NA	NA|97aa|down_1|CP018456.1_3502268_3502559_-	NA	NA|212aa|down_2|CP018456.1_3502623_3503259_+	NA	NA|73aa|down_3|CP018456.1_3503443_3503662_-	NA	NA|175aa|down_4|CP018456.1_3503756_3504281_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|322aa|down_5|CP018456.1_3504632_3505598_-	cd06231, M14_REP34-like, Peptidase M14-like domain similar to rapid encystment phenotype 34 (REP34)	NA|246aa|down_6|CP018456.1_3505693_3506431_-	PRK08945, PRK08945, putative oxoacyl-(acyl carrier protein) reductase; Provisional	NA|823aa|down_7|CP018456.1_3506692_3509161_+	TIGR03502, lipase_Pla1_cef, extracellular lipase, Pla-1/cef family	NA|341aa|down_8|CP018456.1_3509280_3510303_+	PRK11778, PRK11778, putative inner membrane peptidase; Provisional	NA|337aa|down_9|CP018456.1_3510687_3511698_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]
GCA_003427415.1_ASM342741v1	CP018456	Shewanella algae strain CCU101 chromosome, complete genome	4	4375464-4375584	4	CRISPRCasFinder	no		csa3,DinG,cas3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,WYL,DEDDh,RT	Orphan	CCTCCGACTATGCTTTGTTTAAGCATTTAACAA	33	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,cas3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,WYL,DEDDh,RT	NA,NA|326aa|down_0|CP018456.1_4376184_4377162_+,NA|131aa|down_1|CP018456.1_4377794_4378187_+,NA|119aa|down_2|CP018456.1_4378406_4378763_+,NA|141aa|down_4|CP018456.1_4379305_4379728_+	NA|249aa|up_9|CP018456.1_4364706_4365453_+	PRK10444, PRK10444, HAD-IIA family hydrolase	NA|555aa|up_8|CP018456.1_4367551_4369216_+	PRK09431, asnB, asparagine synthetase B; Provisional	NA|78aa|up_7|CP018456.1_4369348_4369582_-	pfam06945, DUF1289, Protein of unknown function (DUF1289)	NA|115aa|up_6|CP018456.1_4369591_4369936_-	cd00580, CHMI, 5-carboxymethyl-2-hydroxymuconate isomerase (CHMI) is a trimeric enzyme catalyzing the isomerization of the unsaturated ketone 5-(carboxymethyl)-2-hydroxymuconate to 5-(carboxymethyl)-2-oxo-3-hexene-1,6-dionate	NA|117aa|up_5|CP018456.1_4369970_4370321_-	cd07247, SgaA_N_like, N-terminal domain of Streptomyces griseus SgaA and similar domains	NA|223aa|up_4|CP018456.1_4370431_4371100_-	pfam04286, DUF445, Protein of unknown function (DUF445)	NA|139aa|up_3|CP018456.1_4371227_4371644_-	cd04301, NAT_SF, N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate	NA|308aa|up_2|CP018456.1_4373065_4373989_+	pfam04471, Mrr_cat, Restriction endonuclease	NA|242aa|up_1|CP018456.1_4373981_4374707_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|143aa|up_0|CP018456.1_4374706_4375135_+	cd00156, REC, phosphoacceptor receiver (REC) domain of response regulators (RRs) and pseudo response regulators (PRRs)	NA|326aa|down_0|CP018456.1_4376184_4377162_+	NA	NA|131aa|down_1|CP018456.1_4377794_4378187_+	NA	NA|119aa|down_2|CP018456.1_4378406_4378763_+	NA	NA|94aa|down_3|CP018456.1_4378966_4379248_+	pfam09351, DUF1993, Domain of unknown function (DUF1993)	NA|141aa|down_4|CP018456.1_4379305_4379728_+	NA	NA|156aa|down_5|CP018456.1_4379997_4380465_+	sd00045, ANK, ankyrin repeats	NA|1079aa|down_6|CP018456.1_4381634_4384871_+	pfam05359, DUF748, Domain of Unknown Function (DUF748)	NA|119aa|down_7|CP018456.1_4385519_4385876_+	cd00570, GST_N_family, Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of  glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress	NA|158aa|down_8|CP018456.1_4386061_4386535_+	pfam06271, RDD, RDD family	NA|230aa|down_9|CP018456.1_4386546_4387236_-	COG3235, COG3235, Predicted membrane protein [Function unknown]
