The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP031683	Haemophilus influenzae strain P662-7189 chromosome, complete genome	1904311	646397	709287	1904311	tail,portal,protease,tRNA,terminase	Mannheimia_phage(11.36%)	77	NA	NA
AXP77455.1|646397_647108_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	tRNA	NA	NA	NA	NA
AXP77456.1|647120_649043_-	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	33.1	3.3e-98
AXP77457.1|649368_649779_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
AXP77458.1|649795_650482_+	protein TolQ	NA	NA	NA	NA	NA
AXP77459.1|650553_650973_+	protein TolR	NA	NA	NA	NA	NA
AXP77460.1|650988_652179_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
AXP77461.1|652220_653504_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
AXP77462.1|653527_653989_+	outer membrane protein P6	NA	NA	NA	NA	NA
AXP77463.1|655345_655660_-	DNA-binding protein	NA	NA	NA	NA	NA
AXP77464.1|655804_656242_-	hypothetical protein	NA	A0A2K9V3W6	Faecalibacterium_phage	37.6	2.0e-24
AXP77465.1|656245_656515_-	hypothetical protein	NA	NA	NA	NA	NA
AXP77466.1|656779_657268_-	hypothetical protein	NA	NA	NA	NA	NA
AXP77467.1|657316_658480_-	DNA (cytosine-5-)-methyltransferase	NA	A0A2I7RFJ9	Vibrio_phage	46.4	7.5e-90
AXP77468.1|658487_658847_-	hypothetical protein	NA	NA	NA	NA	NA
AXP77469.1|658843_659089_-	hypothetical protein	NA	NA	NA	NA	NA
AXP77470.1|659085_659982_-	recombination-associated protein RdgC	NA	S4TWL4	Salmonella_phage	44.0	2.4e-56
AXP77471.1|660106_661075_-	hypothetical protein	NA	A0A0U3TGV3	Pseudomonas_phage	58.2	2.4e-33
AXP77472.1|661136_661571_-	single-stranded DNA-binding protein	NA	A0A059WRL7	Vibrio_phage	36.2	7.5e-19
AXP77473.1|661570_662221_-	translocation protein TolB precursor	NA	A0A0M3LP90	Mannheimia_phage	69.3	2.5e-82
AXP77474.1|662195_663116_-	recombinase	NA	A0A0M3LNU3	Mannheimia_phage	71.5	4.8e-116
AXP77475.1|663128_663422_-	hypothetical protein	NA	NA	NA	NA	NA
AXP77476.1|663418_663763_-	hypothetical protein	NA	NA	NA	NA	NA
AXP77477.1|663776_664514_-	site-specific DNA-methyltransferase	NA	A0A0E3U2R2	Fusobacterium_phage	77.5	4.0e-113
AXP77478.1|664604_665636_-	endonuclease	NA	D0UIK6	Aggregatibacter_phage	82.8	5.2e-42
AXP77479.1|665625_665877_-	hypothetical protein	NA	NA	NA	NA	NA
AXP77480.1|665860_666040_+	hypothetical protein	NA	NA	NA	NA	NA
AXP77481.1|666008_666326_-	hypothetical protein	NA	NA	NA	NA	NA
AXP77482.1|666493_666715_-	hypothetical protein	NA	NA	NA	NA	NA
AXP77483.1|666729_666900_+	DUF1508 domain-containing protein	NA	NA	NA	NA	NA
AXP77484.1|667455_668376_-	DUF3800 domain-containing protein	NA	A5X9G9	Aeromonas_virus	43.7	5.1e-57
AXP77485.1|668578_669280_-	helix-turn-helix transcriptional regulator	NA	G8C7U1	Escherichia_phage	33.6	1.9e-24
AXP77486.1|669428_669644_+	helix-turn-helix domain-containing protein	NA	Q19UN8	Mannheimia_phage	52.9	1.2e-09
AXP77487.1|669717_670425_+	hypothetical protein	NA	Q7Y5W2	Haemophilus_phage	52.6	2.4e-46
AXP77488.1|670421_671180_+	helix-turn-helix domain-containing protein	NA	D0UIL5	Aggregatibacter_phage	67.3	1.6e-61
AXP77489.1|671164_671800_+	replication P	NA	A0A1P8DTF3	Proteus_phage	33.8	2.7e-17
AXP77490.1|671796_672021_+	hypothetical protein	NA	A0A0M3LR43	Mannheimia_phage	49.3	1.0e-11
AXP77491.1|672057_672474_+	recombination protein NinB	NA	Q7Y5V7	Haemophilus_phage	85.4	9.6e-64
AXP77492.1|672566_673112_+	recombination protein NinG	NA	D0UIK8	Aggregatibacter_phage	66.3	1.3e-60
AXP77493.1|673112_673622_+	antitermination protein	NA	A0A077KC63	Edwardsiella_phage	35.6	3.5e-15
AXP77494.1|673879_674131_+	hypothetical protein	NA	NA	NA	NA	NA
AXP77495.1|674111_674654_+	lysozyme	NA	A0A0M3LPQ1	Mannheimia_phage	51.4	9.0e-46
AXP77496.1|674626_674962_+	DUF2570 domain-containing protein	NA	Q7Y5U9	Haemophilus_phage	50.0	1.9e-17
AXP77497.1|674873_675155_+	hypothetical protein	NA	Q776X1	Haemophilus_phage	73.3	1.6e-30
AXP77498.1|675425_675899_+	DUF1441 family protein	NA	K7PJY2	Enterobacterial_phage	53.0	1.9e-39
AXP77499.1|675901_678022_+|terminase	phage terminase large subunit family protein	terminase	K7PH52	Enterobacterial_phage	67.1	1.5e-277
AXP77500.1|678018_678237_+	hypothetical protein	NA	NA	NA	NA	NA
AXP77501.1|678240_679764_+|portal	phage portal protein	portal	S5MW34	Escherichia_phage	57.9	2.9e-158
AXP78600.1|679714_681742_+|protease	Clp protease ClpP	protease	A0A1W6JT88	Pseudomonas_phage	56.1	1.7e-198
AXP77502.1|681820_682144_+	DUF2190 family protein	NA	NA	NA	NA	NA
AXP77503.1|682124_682436_+	hypothetical protein	NA	NA	NA	NA	NA
AXP77504.1|682438_682969_+|tail	phage tail protein	tail	K7PKQ5	Enterobacteria_phage	50.0	2.7e-18
AXP77505.1|682977_683388_+|tail	phage tail protein	tail	NA	NA	NA	NA
AXP77506.1|683390_684041_+	hypothetical protein	NA	NA	NA	NA	NA
AXP77507.1|684315_684723_+	hypothetical protein	NA	NA	NA	NA	NA
AXP77508.1|684767_684992_+	DUF4035 domain-containing protein	NA	NA	NA	NA	NA
AXP77509.1|685060_685444_+	diaminopimelate decarboxylase	NA	NA	NA	NA	NA
AXP77510.1|685427_685730_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AXP78601.1|685745_685982_+	hypothetical protein	NA	NA	NA	NA	NA
AXP77511.1|686033_689426_+|tail	phage tail tape measure protein	tail	A0A2P1CKJ3	Pantoea_phage	24.0	3.5e-39
AXP77512.1|689434_689767_+|tail	phage tail protein	tail	H6WZM2	Escherichia_phage	38.5	2.7e-16
AXP77513.1|690276_691428_+	type I restriction endonuclease subunit R	NA	A0A1S5SAB0	Streptococcus_phage	30.1	6.8e-35
AXP77514.1|691737_692628_+	hypothetical protein	NA	D0UIK6	Aggregatibacter_phage	56.5	6.1e-84
AXP77515.1|693044_693563_+	hypothetical protein	NA	G0ZNF0	Cronobacter_phage	49.2	1.3e-30
AXP77516.1|693606_694257_+|tail	phage minor tail protein L	tail	Q6JIL5	Burkholderia_virus	39.6	3.3e-34
AXP77517.1|694258_694966_+	hypothetical protein	NA	A0A1B1IV85	uncultured_Mediterranean_phage	43.2	4.4e-53
AXP77518.1|694904_695624_+|tail	tail assembly protein	tail	A0A1P8DTG7	Proteus_phage	40.2	6.1e-34
AXP77519.1|695627_699266_+|tail	phage tail protein	tail	A0A0R6PIC9	Moraxella_phage	37.4	1.7e-143
AXP78602.1|699462_701085_+|tail	tail fiber protein	tail	Q94MY0	Haemophilus_virus	64.6	3.1e-211
AXP77520.1|701096_701699_+	hypothetical protein	NA	Q94MX9	Haemophilus_virus	93.5	3.3e-97
AXP77521.1|701695_702154_+	enoyl-CoA hydratase	NA	F6MIM0	Haemophilus_phage	57.1	4.4e-46
AXP77522.1|702802_703528_+|tRNA	tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ	tRNA	NA	NA	NA	NA
AXP77523.1|704100_705315_+	IscS subfamily cysteine desulfurase	NA	H7BUW1	unidentified_phage	36.0	1.1e-32
AXP77524.1|705338_705755_+	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	80.6	2.0e-53
AXP77525.1|705812_706136_+	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	46.7	4.4e-24
AXP77526.1|706148_706673_+	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
AXP77527.1|706723_707410_+	DUF2625 domain-containing protein	NA	NA	NA	NA	NA
AXP77528.1|707427_709287_+	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	43.2	1.6e-110
>prophage 2
CP031683	Haemophilus influenzae strain P662-7189 chromosome, complete genome	1904311	971885	1075105	1904311	tail,plate,head,tRNA,transposase,terminase	Burkholderia_virus(16.33%)	93	NA	NA
AXP77767.1|971885_972671_-|tRNA	tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA	tRNA	A0A291ATS8	Pandoravirus	28.9	1.5e-17
AXP77768.1|972655_973765_-	murein transglycosylase A	NA	NA	NA	NA	NA
AXP77769.1|974159_976295_+	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA	W6LLI2	Streptococcus_phage	29.9	9.7e-19
AXP77770.1|983117_985361_-	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA	NA
AXP77771.1|985721_986351_-	glutathione S-transferase family protein	NA	NA	NA	NA	NA
AXP77772.1|986685_987975_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	51.8	9.5e-94
AXP77773.1|988141_988483_+	hypothetical protein	NA	NA	NA	NA	NA
AXP77774.1|988572_989052_-	threonine/serine exporter	NA	NA	NA	NA	NA
AXP77775.1|989053_989824_-	threonine/serine exporter ThrE family protein	NA	NA	NA	NA	NA
AXP77776.1|989952_991215_-	HlyC/CorC family transporter	NA	NA	NA	NA	NA
AXP77777.1|991495_992884_+	signal recognition particle protein	NA	NA	NA	NA	NA
AXP77778.1|996227_997478_-	restriction endonuclease subunit S	NA	NA	NA	NA	NA
AXP77779.1|999314_999815_-	ci repressor-like protein	NA	A0A0M3LPN5	Mannheimia_phage	44.0	6.4e-14
AXP77780.1|1000025_1000253_+	transcriptional regulator	NA	A0A0M3LPY8	Mannheimia_phage	69.0	2.1e-20
AXP77781.1|1000263_1002273_+|transposase	transposase	transposase	A0A0C4UR24	Shigella_phage	37.7	5.1e-102
AXP77782.1|1002299_1003217_+	helix-turn-helix domain-containing protein	NA	A0A2I7S9C3	Vibrio_phage	39.6	2.5e-56
AXP77783.1|1003216_1003420_+	hypothetical protein	NA	NA	NA	NA	NA
AXP77784.1|1003441_1003960_+	host-nuclease inhibitor protein Gam	NA	F6MIJ0	Haemophilus_phage	55.2	1.0e-43
AXP77785.1|1004064_1004262_+	ANR family transcriptional regulator	NA	NA	NA	NA	NA
AXP77786.1|1004439_1004634_+	hypothetical protein	NA	NA	NA	NA	NA
AXP77787.1|1004715_1005684_+	hypothetical protein	NA	NA	NA	NA	NA
AXP77788.1|1005792_1006281_+	regulatory protein GemA	NA	A0A0C4UQU3	Shigella_phage	31.7	4.8e-14
AXP78607.1|1006284_1006659_+	transcriptional regulator	NA	Q6QIE8	Burkholderia_phage	46.2	1.9e-23
AXP77789.1|1006732_1007152_+	hypothetical protein	NA	NA	NA	NA	NA
AXP77790.1|1007238_1007775_+	N-acetylmuramoyl-L-alanine amidase	NA	F6MIJ9	Haemophilus_phage	68.0	7.2e-72
AXP77791.1|1008014_1008245_+	DUF2644 domain-containing protein	NA	F6MIK0	Haemophilus_phage	70.7	3.3e-18
AXP77792.1|1008241_1008499_+	DUF2681 domain-containing protein	NA	NA	NA	NA	NA
AXP77793.1|1008622_1008931_+	hypothetical protein	NA	Q6QIC4	Burkholderia_phage	39.4	6.3e-12
AXP77794.1|1008927_1009230_+	hypothetical protein	NA	A0A0S4L0A3	Pseudomonas_phage	52.0	3.1e-24
AXP77795.1|1009239_1009788_+	DUF3486 family protein	NA	Q6QIC2	Burkholderia_phage	40.3	5.9e-29
AXP77796.1|1009771_1011094_+|terminase	terminase	terminase	A0A2P9JZI8	Alteromonadaceae_phage	64.2	1.8e-148
AXP77797.1|1011095_1012511_+	DUF935 family protein	NA	Q6QIC0	Burkholderia_phage	45.4	5.9e-113
AXP77798.1|1012511_1013789_+|head	phage head morphogenesis protein	head	J9STS2	Pseudomonas_phage	47.6	7.3e-54
AXP77799.1|1013975_1014164_+	hypothetical protein	NA	NA	NA	NA	NA
AXP77800.1|1014366_1014867_+	phage virion morphogenesis protein	NA	Q5ZQY1	Pseudomonas_phage	34.6	4.3e-18
AXP77801.1|1015109_1016213_+	peptidase	NA	A4JWJ9	Burkholderia_virus	39.5	5.5e-66
AXP77802.1|1016231_1017158_+	hypothetical protein	NA	A4JWK0	Burkholderia_virus	47.9	1.3e-73
AXP77803.1|1017223_1017595_+	hypothetical protein	NA	NA	NA	NA	NA
AXP77804.1|1017594_1018029_+	DUF1320 domain-containing protein	NA	A4JWK2	Burkholderia_virus	36.4	4.4e-19
AXP77805.1|1018040_1018538_+	hypothetical protein	NA	NA	NA	NA	NA
AXP77806.1|1018547_1019933_+|tail	phage tail protein	tail	A4JWK5	Burkholderia_virus	44.3	5.2e-98
AXP77807.1|1019943_1020462_+|tail	phage major tail tube protein	tail	A4JWK6	Burkholderia_virus	44.4	1.2e-36
AXP77808.1|1020555_1020831_+|tail	phage tail assembly protein	tail	A0A1B2LRV6	Wolbachia_phage	36.8	1.0e-05
AXP77809.1|1020851_1020992_+|tail	GpE family phage tail protein	tail	NA	NA	NA	NA
AXP77810.1|1021007_1021241_-	hypothetical protein	NA	NA	NA	NA	NA
AXP77811.1|1021277_1023626_+|tail	phage tail tape measure protein	tail	K4ICR4	Acidithiobacillus_phage	40.3	3.7e-72
AXP77812.1|1023625_1024558_+	hypothetical protein	NA	A4JWL1	Burkholderia_virus	29.9	1.6e-18
AXP77813.1|1024538_1024769_+	hypothetical protein	NA	Q6QIA3	Burkholderia_phage	46.3	3.6e-12
AXP77814.1|1024761_1025826_+	hypothetical protein	NA	A4JWL3	Burkholderia_virus	38.3	2.5e-60
AXP77815.1|1025812_1026421_+|plate	phage baseplate assembly protein V	plate	R9U0U6	Rhizobium_phage	30.9	5.2e-10
AXP77816.1|1026475_1026841_+|plate	phage baseplate protein	plate	Q6QIA0	Burkholderia_phage	42.5	4.7e-14
AXP77817.1|1026840_1027947_+|plate	baseplate J/gp47 family protein	plate	Q6QI99	Burkholderia_phage	37.8	5.9e-60
AXP77818.1|1027939_1028509_+|tail	phage tail protein	tail	A4JWL7	Burkholderia_virus	45.3	4.5e-40
AXP77819.1|1028540_1030250_+|tail	phage tail protein	tail	Q94MY0	Haemophilus_virus	67.8	1.0e-159
AXP77820.1|1030261_1030864_+	hypothetical protein	NA	Q94MX9	Haemophilus_virus	91.0	2.6e-94
AXP77821.1|1030930_1031362_+	enoyl-CoA hydratase	NA	F6MIM0	Haemophilus_phage	65.5	1.4e-49
AXP77822.1|1031537_1031657_+	Com family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
AXP77823.1|1031713_1032559_+	hypothetical protein	NA	F6MIM2	Haemophilus_phage	71.7	1.6e-118
AXP77824.1|1032598_1032862_-	hypothetical protein	NA	F6MIM3	Haemophilus_phage	76.7	6.1e-32
AXP77825.1|1033458_1035831_-	SAM-dependent DNA methyltransferase	NA	A0A220A2U4	Liberibacter_phage	28.8	1.2e-22
AXP77826.1|1036006_1036762_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
AXP77827.1|1037055_1038951_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	36.7	7.6e-116
AXP77828.1|1039029_1039374_+	ArsC family reductase	NA	NA	NA	NA	NA
AXP77829.1|1039401_1040535_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
AXP77830.1|1040536_1041217_+	D-alanyl-D-alanine carboxypeptidase family protein	NA	NA	NA	NA	NA
AXP78608.1|1041251_1042307_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	29.1	9.0e-26
AXP77831.1|1042308_1043829_-	iron ABC transporter permease	NA	NA	NA	NA	NA
AXP77832.1|1043946_1044945_-	iron ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXP78609.1|1045096_1046575_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
AXP77833.1|1046862_1047564_-	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
AXP77834.1|1047873_1050321_+	bifunctional aspartate kinase/homoserine dehydrogenase I	NA	NA	NA	NA	NA
AXP77835.1|1050333_1051278_+	homoserine kinase	NA	NA	NA	NA	NA
AXP77836.1|1051320_1052598_+	threonine synthase	NA	NA	NA	NA	NA
AXP78610.1|1053427_1054573_+	methionine biosynthesis PLP-dependent protein	NA	A0A141ZJM2	Faustovirus	26.5	2.1e-12
AXP77837.1|1054585_1055581_+	2-hydroxyacid dehydrogenase	NA	M1H502	Paramecium_bursaria_Chlorella_virus	39.6	4.9e-66
AXP77838.1|1055700_1056024_+	thioredoxin	NA	A0A1J0GW78	Streptomyces_phage	42.4	9.8e-16
AXP77839.1|1055979_1056219_-	hypothetical protein	NA	NA	NA	NA	NA
AXP77840.1|1056437_1057226_-	TatD family deoxyribonuclease	NA	NA	NA	NA	NA
AXP77841.1|1057367_1057799_-	hypothetical protein	NA	NA	NA	NA	NA
AXP77842.1|1057802_1058312_-	peptidylprolyl isomerase	NA	A0A1B1IVS0	uncultured_Mediterranean_phage	32.9	5.5e-13
AXP77843.1|1058414_1059794_+|tRNA	cysteine--tRNA ligase	tRNA	A0A1V0SAQ2	Catovirus	29.7	6.6e-53
AXP77844.1|1059954_1060815_-	acyl-CoA thioesterase II	NA	NA	NA	NA	NA
AXP77845.1|1060933_1063057_-	anaerobic ribonucleoside-triphosphate reductase	NA	A0A2I7QNQ7	Vibrio_phage	62.7	2.8e-260
AXP77846.1|1063338_1063779_+	hypothetical protein	NA	NA	NA	NA	NA
AXP77847.1|1063771_1064116_+	nucleotidyltransferase domain-containing protein	NA	NA	NA	NA	NA
AXP77848.1|1064128_1064755_-	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
AXP78611.1|1064825_1065716_+	NAD(+) kinase	NA	NA	NA	NA	NA
AXP77849.1|1065828_1067505_+	DNA repair protein RecN	NA	NA	NA	NA	NA
AXP77850.1|1067526_1070472_-	bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase	NA	NA	NA	NA	NA
AXP77851.1|1070477_1071413_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
AXP77852.1|1071420_1073322_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.0	5.3e-69
AXP77853.1|1073322_1074621_-	LysM peptidoglycan-binding domain-containing protein	NA	A0A0N6W8I1	Bacillus_phage	24.2	2.2e-13
AXP77854.1|1074628_1075105_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
>prophage 3
CP031683	Haemophilus influenzae strain P662-7189 chromosome, complete genome	1904311	1304389	1395380	1904311	tail,capsid,lysis,plate,head,protease,tRNA,terminase	Mannheimia_phage(37.5%)	82	NA	NA
AXP78039.1|1304389_1306360_+|tRNA	tRNA(Met) cytidine acetyltransferase	tRNA	NA	NA	NA	NA
AXP78040.1|1306631_1310072_+	transcription-repair coupling factor	NA	NA	NA	NA	NA
AXP78041.1|1310124_1311516_-|protease	DegQ family serine endoprotease	protease	A0A1B1IT49	uncultured_Mediterranean_phage	31.2	7.2e-23
AXP78042.1|1311709_1312600_+	acetyl-CoA carboxylase carboxyl transferase subunit beta	NA	NA	NA	NA	NA
AXP78043.1|1312592_1313906_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
AXP78044.1|1314193_1314874_-	vancomycin high temperature exclusion protein	NA	NA	NA	NA	NA
AXP78045.1|1315031_1316108_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
AXP78046.1|1316162_1318805_-	DNA topoisomerase (ATP-hydrolyzing) subunit A	NA	G3M9Z5	Bacillus_virus	32.3	2.1e-103
AXP78047.1|1319339_1321103_-	30S ribosomal protein S12 methylthiotransferase accessory factor YcaO	NA	NA	NA	NA	NA
AXP78048.1|1321239_1321587_-	hypothetical protein	NA	NA	NA	NA	NA
AXP78049.1|1321574_1322141_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXP78050.1|1322137_1323154_+	iron ABC transporter permease	NA	NA	NA	NA	NA
AXP78051.1|1323912_1324719_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AXP78052.1|1324770_1325487_+	hydroxyacylglutathione hydrolase	NA	A0A1X9I5D3	Streptococcus_phage	27.9	3.7e-07
AXP78053.1|1325539_1326400_-	tellurite resistance methyltransferase TehB	NA	NA	NA	NA	NA
AXP78054.1|1326512_1328561_-|tRNA	methionine--tRNA ligase	tRNA	A0A2K9V939	Bandra_megavirus	29.3	2.2e-60
AXP78055.1|1328711_1329824_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
AXP78056.1|1329870_1330533_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
AXP78057.1|1330637_1331321_+	acylneuraminate cytidylyltransferase	NA	NA	NA	NA	NA
AXP78058.1|1331214_1331529_-	hypothetical protein	NA	NA	NA	NA	NA
AXP78059.1|1333049_1334831_-|terminase	terminase	terminase	A0A0M3LRV4	Mannheimia_phage	65.4	5.0e-218
AXP78060.1|1334995_1335811_+|capsid	capsid scaffolding protein	capsid	A0A0M3LNM2	Mannheimia_phage	60.5	6.9e-66
AXP78061.1|1335831_1336881_+|capsid	phage major capsid protein, P2 family	capsid	Q19UT3	Mannheimia_phage	51.6	4.4e-89
AXP78062.1|1336892_1337543_+|terminase	terminase	terminase	Q19US0	Mannheimia_phage	46.0	4.1e-45
AXP78063.1|1337836_1338343_+|head	phage head protein	head	A0A0M3LNL8	Mannheimia_phage	51.0	2.8e-33
AXP78064.1|1338342_1338552_+|tail	phage tail protein	tail	NA	NA	NA	NA
AXP78065.1|1338553_1338775_+|lysis	lysis protein	lysis	NA	NA	NA	NA
AXP78066.1|1338767_1339286_+	lysozyme	NA	A0A0M3LPQ1	Mannheimia_phage	46.6	9.5e-37
AXP78067.1|1339270_1339621_+	chemotaxis protein	NA	NA	NA	NA	NA
AXP78068.1|1339535_1339799_+	hypothetical protein	NA	NA	NA	NA	NA
AXP78069.1|1339795_1340011_+	TraR/DksA family transcriptional regulator	NA	A0A0M3LS11	Mannheimia_phage	47.9	1.1e-10
AXP78070.1|1340235_1340706_+|tail	phage tail protein	tail	E5G6N3	Salmonella_phage	45.3	7.3e-28
AXP78071.1|1340705_1341167_+	phage virion morphogenesis protein	NA	A0A2H4J927	uncultured_Caudovirales_phage	48.2	5.7e-25
AXP78072.1|1341167_1341515_-	hypothetical protein	NA	NA	NA	NA	NA
AXP78073.1|1341618_1341801_+	hypothetical protein	NA	Q19UR2	Mannheimia_phage	47.8	8.8e-06
AXP78074.1|1341811_1342123_-	hypothetical protein	NA	NA	NA	NA	NA
AXP78075.1|1342225_1342399_+	hypothetical protein	NA	Q19UR2	Mannheimia_phage	53.3	3.2e-05
AXP78076.1|1342376_1342637_-	hypothetical protein	NA	NA	NA	NA	NA
AXP78077.1|1345701_1346154_+	hypothetical protein	NA	NA	NA	NA	NA
AXP78078.1|1346251_1346809_+	hypothetical protein	NA	NA	NA	NA	NA
AXP78079.1|1346817_1347246_+	hypothetical protein	NA	NA	NA	NA	NA
AXP78080.1|1347349_1347949_+|plate	phage baseplate assembly protein V	plate	A0A0M3LPY9	Mannheimia_phage	66.0	4.2e-44
AXP78081.1|1347950_1348289_+|plate	baseplate assembly protein W	plate	Q19UQ6	Mannheimia_phage	56.6	3.4e-19
AXP78082.1|1348285_1349200_+|plate	baseplate assembly protein	plate	Q19UQ5	Mannheimia_phage	58.6	1.3e-92
AXP78083.1|1349186_1349726_+|tail	phage tail protein I	tail	M1T2R2	Escherichia_phage	53.4	9.2e-51
AXP78084.1|1349734_1352257_+|tail	phage tail protein	tail	Q94MY0	Haemophilus_virus	69.4	2.9e-256
AXP78085.1|1352268_1352871_+	hypothetical protein	NA	Q94MX9	Haemophilus_virus	91.0	2.6e-94
AXP78086.1|1352937_1353372_+	enoyl-CoA hydratase	NA	F6MIM0	Haemophilus_phage	66.4	1.2e-48
AXP78087.1|1353428_1354250_+	hypothetical protein	NA	NA	NA	NA	NA
AXP78088.1|1354263_1354632_+	hypothetical protein	NA	NA	NA	NA	NA
AXP78618.1|1354648_1355788_+	hypothetical protein	NA	NA	NA	NA	NA
AXP78089.1|1355797_1356325_+	hypothetical protein	NA	NA	NA	NA	NA
AXP78090.1|1356328_1357093_+	hypothetical protein	NA	NA	NA	NA	NA
AXP78091.1|1358753_1359209_+	ribosome maturation factor RimP	NA	NA	NA	NA	NA
AXP78092.1|1359225_1360713_+	transcription termination/antitermination protein NusA	NA	NA	NA	NA	NA
AXP78093.1|1360724_1363214_+	translation initiation factor IF-2	NA	A0A2H4UTS4	Bodo_saltans_virus	26.0	3.5e-28
AXP78094.1|1363292_1366460_-	type I restriction endonuclease subunit R	NA	A0A220A398	Liberibacter_phage	27.1	9.5e-79
AXP78095.1|1366463_1367096_-	hypothetical protein	NA	NA	NA	NA	NA
AXP78096.1|1367092_1368409_-	restriction endonuclease subunit S	NA	NA	NA	NA	NA
AXP78097.1|1368401_1370078_-	SAM-dependent DNA methyltransferase	NA	A0A2H4PQP4	Staphylococcus_phage	30.1	4.1e-49
AXP78098.1|1370242_1370629_+	30S ribosome-binding factor RbfA	NA	NA	NA	NA	NA
AXP78099.1|1370628_1371549_+|tRNA	tRNA pseudouridine(55) synthase TruB	tRNA	NA	NA	NA	NA
AXP78100.1|1371628_1372762_+	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA	NA
AXP78101.1|1372794_1373634_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	39.3	1.0e-40
AXP78102.1|1373677_1374475_-	hypothetical protein	NA	NA	NA	NA	NA
AXP78103.1|1374465_1374846_-	hypothetical protein	NA	NA	NA	NA	NA
AXP78104.1|1374842_1376042_-	cysteine desulfurase	NA	Q2XUY6	environmental_halophage	32.0	2.0e-61
AXP78619.1|1376043_1376505_-	thermonuclease family protein	NA	A0A0R6PHV6	Moraxella_phage	47.0	6.9e-31
AXP78105.1|1376640_1377063_+	hypothetical protein	NA	NA	NA	NA	NA
AXP78106.1|1377081_1377777_+|lysis	CidB/LrgB family autolysis modulator	lysis	NA	NA	NA	NA
AXP78107.1|1377869_1379255_+	deoxyguanosinetriphosphate triphosphohydrolase family protein	NA	NA	NA	NA	NA
AXP78108.1|1379348_1381292_+	ABC transporter ATP-binding protein	NA	A0A2K9L0W2	Tupanvirus	29.8	1.6e-52
AXP78109.1|1381372_1382512_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
AXP78110.1|1382584_1383355_-	spermidine/putrescine ABC transporter permease PotC	NA	NA	NA	NA	NA
AXP78111.1|1383354_1384215_-	spermidine/putrescine ABC transporter permease	NA	Q6GZ02	Mycoplasma_phage	28.2	4.5e-15
AXP78112.1|1384198_1385347_-	spermidine/putrescine ABC transporter ATP-binding protein PotA	NA	Q6GZ03	Mycoplasma_phage	36.6	3.3e-29
AXP78113.1|1387424_1387907_-	DNA starvation/stationary phase protection protein	NA	NA	NA	NA	NA
AXP78114.1|1388180_1389059_+	cytidine deaminase	NA	NA	NA	NA	NA
AXP78115.1|1389102_1390068_-|tRNA	tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	tRNA	NA	NA	NA	NA
AXP78116.1|1390064_1391579_-	sodium/proline symporter PutP	NA	NA	NA	NA	NA
AXP78117.1|1391694_1393170_+	ribonuclease G	NA	NA	NA	NA	NA
AXP78118.1|1393706_1395380_+|tRNA	glutamine--tRNA ligase	tRNA	A0A222YZ70	Escherichia_phage	76.7	1.1e-254
>prophage 4
CP031683	Haemophilus influenzae strain P662-7189 chromosome, complete genome	1904311	1442384	1454375	1904311	tRNA	Acinetobacter_phage(42.86%)	11	NA	NA
AXP78620.1|1442384_1443389_-	phosphate ABC transporter substrate-binding protein PstS	NA	A0A222YW41	Synechococcus_phage	40.5	1.2e-51
AXP78149.1|1443846_1444395_+	non-heme ferritin	NA	NA	NA	NA	NA
AXP78150.1|1444410_1444908_+	non-heme ferritin	NA	NA	NA	NA	NA
AXP78151.1|1445049_1445925_+	glycosyltransferase	NA	A7IW34	Paramecium_bursaria_Chlorella_virus	29.7	2.9e-17
AXP78152.1|1446026_1447583_+	anthranilate synthase component I	NA	A0A0B5J984	Pandoravirus	33.2	2.4e-22
AXP78153.1|1447595_1448183_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	40.0	2.2e-34
AXP78154.1|1448231_1448618_+	tautomerase family protein	NA	NA	NA	NA	NA
AXP78155.1|1448670_1449672_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	39.2	1.3e-45
AXP78156.1|1449709_1451143_+	bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF	NA	A0A0P0IR83	Acinetobacter_phage	38.0	1.2e-33
AXP78157.1|1451204_1451477_+	hydrogenase maturation factor HybG	NA	NA	NA	NA	NA
AXP78158.1|1451510_1454375_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.4	2.3e-148
>prophage 5
CP031683	Haemophilus influenzae strain P662-7189 chromosome, complete genome	1904311	1462445	1478677	1904311	head,holin,terminase	Haemophilus_phage(42.86%)	24	NA	NA
AXP78171.1|1462445_1462622_-	DUF2213 domain-containing protein	NA	Q7Y5U2	Haemophilus_phage	93.1	8.5e-22
AXP78172.1|1462762_1464073_-|head	phage head morphogenesis protein	head	Q7Y5U5	Haemophilus_phage	78.3	5.3e-108
AXP78173.1|1463972_1465307_-	DUF1073 domain-containing protein	NA	Q7Y5U6	Haemophilus_phage	84.2	2.1e-213
AXP78621.1|1465308_1466583_-|terminase	PBSX family phage terminase large subunit	terminase	A0A220NQL3	Acinetobacter_phage	55.0	7.9e-125
AXP78174.1|1466638_1467151_-|terminase	terminase small subunit	terminase	A0A1X9SFE5	Acinetobacter_phage	39.2	1.0e-19
AXP78175.1|1467195_1467474_+	XRE family transcriptional regulator	NA	A0A1S5NNJ5	Burkholderia_phage	66.2	6.5e-16
AXP78176.1|1467475_1467757_-	hypothetical protein	NA	Q776X1	Haemophilus_phage	73.3	9.4e-31
AXP78177.1|1467668_1467992_-	DUF2570 domain-containing protein	NA	Q7Y5U9	Haemophilus_phage	54.6	7.8e-21
AXP78178.1|1467984_1468587_-	glycoside hydrolase family 19 protein	NA	Q7Y5V0	Haemophilus_phage	53.4	3.7e-56
AXP78179.1|1468555_1468912_-|holin	phage holin, lambda family	holin	NA	NA	NA	NA
AXP78180.1|1469248_1469917_-	hypothetical protein	NA	D0UIM5	Aggregatibacter_phage	62.3	6.7e-67
AXP78181.1|1470274_1471240_+	hypothetical protein	NA	Q8HA04	Enterobacteria_phage	58.8	1.2e-88
AXP78182.1|1471289_1471661_-	hypothetical protein	NA	NA	NA	NA	NA
AXP78183.1|1471691_1472357_-	HNH endonuclease	NA	A0A2I7QND8	Vibrio_phage	42.8	2.2e-38
AXP78184.1|1472993_1473413_-	recombination protein NinB	NA	Q7Y5V7	Haemophilus_phage	75.4	1.9e-56
AXP78185.1|1473449_1473674_-	hypothetical protein	NA	A0A0M3LR43	Mannheimia_phage	47.9	1.1e-10
AXP78186.1|1473670_1474291_-	replication P	NA	A0A0M3LS65	Mannheimia_phage	39.1	1.9e-28
AXP78187.1|1474287_1475010_-	helix-turn-helix domain-containing protein	NA	D0UIL5	Aggregatibacter_phage	68.3	2.0e-61
AXP78188.1|1475006_1475675_-	hypothetical protein	NA	D0UIL6	Aggregatibacter_phage	51.7	2.2e-54
AXP78189.1|1475721_1476162_-	hypothetical protein	NA	K7PJS5	Enterobacterial_phage	30.3	1.8e-12
AXP78190.1|1476210_1476399_-	DNA-binding protein	NA	Q7Y5W4	Haemophilus_phage	93.5	6.5e-28
AXP78191.1|1476509_1477208_+	XRE family transcriptional regulator	NA	Q7Y5W5	Haemophilus_phage	84.5	1.4e-112
AXP78192.1|1477259_1478339_+	hypothetical protein	NA	NA	NA	NA	NA
AXP78193.1|1478341_1478677_+	DUF4325 domain-containing protein	NA	A0A2H4J4X6	uncultured_Caudovirales_phage	41.5	8.1e-13
>prophage 6
CP031683	Haemophilus influenzae strain P662-7189 chromosome, complete genome	1904311	1716868	1725382	1904311		uncultured_Caudovirales_phage(16.67%)	9	NA	NA
AXP78422.1|1716868_1717552_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	50.7	3.0e-54
AXP78423.1|1717544_1717970_+	6-carboxytetrahydropterin synthase QueD	NA	A0A1U9WRB3	Streptococcus_virus	42.7	1.3e-20
AXP78424.1|1717970_1718606_+	7-carboxy-7-deazaguanine synthase QueE	NA	S4TZT1	uncultured_phage	30.3	1.1e-15
AXP78425.1|1719000_1719234_+	branched-chain amino acid aminotransferase	NA	NA	NA	NA	NA
AXP78426.1|1719217_1721401_+	DNA helicase II	NA	A7KV33	Bacillus_phage	37.6	2.3e-116
AXP78427.1|1721520_1722492_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
AXP78428.1|1722506_1723394_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
AXP78429.1|1723403_1724396_+	dipeptide ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.8	1.5e-14
AXP78430.1|1724398_1725382_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.8	1.8e-20
>prophage 7
CP031683	Haemophilus influenzae strain P662-7189 chromosome, complete genome	1904311	1852333	1861401	1904311		Escherichia_phage(83.33%)	9	NA	NA
AXP78549.1|1852333_1854178_+	ABC transporter ATP-binding protein	NA	F2Y2R6	Organic_Lake_phycodnavirus	29.9	5.6e-23
AXP78550.1|1854301_1854580_-	copper chaperone	NA	NA	NA	NA	NA
AXP78632.1|1854588_1854906_-	hypothetical protein	NA	NA	NA	NA	NA
AXP78551.1|1854925_1856035_-	transglutaminase family protein	NA	NA	NA	NA	NA
AXP78552.1|1856288_1858709_+	twin-arginine translocation signal domain-containing protein	NA	A0A077SK27	Escherichia_phage	50.2	2.6e-222
AXP78553.1|1858719_1859337_+	dimethylsulfoxide reductase subunit B	NA	A0A077SL61	Escherichia_phage	56.8	4.9e-72
AXP78554.1|1859338_1860178_+	dimethyl sulfoxide reductase anchor subunit	NA	A0A077SK59	Escherichia_phage	31.5	4.2e-18
AXP78555.1|1860289_1860901_+	Tat proofreading chaperone DmsD	NA	A0A077SLS7	Escherichia_phage	32.5	1.3e-21
AXP78556.1|1860900_1861401_+	ferredoxin-type protein NapF	NA	A0A077SLP0	Escherichia_phage	32.0	3.2e-13
