assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003425915.1_ASM342591v1	CP031670	Staphylococcus aureus strain 64 chromosome, complete genome	1	397379-397479	1	CRISPRCasFinder	no		WYL,cas3,DEDDh,DinG,csa3	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA|129aa|up_6|CP031670.1_389985_390372_-,NA|86aa|up_4|CP031670.1_391322_391580_-,NA|221aa|down_1|CP031670.1_398569_399232_-,NA|179aa|down_7|CP031670.1_405323_405860_-	NA|88aa|up_9|CP031670.1_388098_388362_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|84aa|up_8|CP031670.1_388661_388913_+	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|194aa|up_7|CP031670.1_389338_389920_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|129aa|up_6|CP031670.1_389985_390372_-	NA	NA|209aa|up_5|CP031670.1_390623_391250_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|86aa|up_4|CP031670.1_391322_391580_-	NA	NA|508aa|up_3|CP031670.1_391694_393218_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_2|CP031670.1_393233_393803_-	TIGR03137, AhpC, peroxiredoxin	NA|269aa|up_1|CP031670.1_394243_395050_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_0|CP031670.1_395130_396519_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|319aa|down_0|CP031670.1_397495_398452_-	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|221aa|down_1|CP031670.1_398569_399232_-	NA	NA|136aa|down_2|CP031670.1_399374_399782_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|CP031670.1_400294_400873_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|CP031670.1_400872_402141_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|CP031670.1_402178_403645_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|CP031670.1_403669_405211_+	PRK00074, guaA, GMP synthase; Reviewed	NA|179aa|down_7|CP031670.1_405323_405860_-	NA	NA|235aa|down_8|CP031670.1_406252_406957_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|91aa|down_9|CP031670.1_407355_407628_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCA_003425915.1_ASM342591v1	CP031670	Staphylococcus aureus strain 64 chromosome, complete genome	2	637624-637716	2	CRISPRCasFinder	no		WYL,cas3,DEDDh,DinG,csa3	Orphan	CTAAAGGTGAAGAGGAACGCAGTTGGATGCTA	32	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA|36aa|up_3|CP031670.1_634107_634215_+,NA|169aa|down_4|CP031670.1_641463_641970_+,NA|239aa|down_5|CP031670.1_642131_642848_+	NA|313aa|up_9|CP031670.1_628309_629248_+	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|179aa|up_8|CP031670.1_629458_629995_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|159aa|up_7|CP031670.1_630163_630640_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|432aa|up_6|CP031670.1_630679_631975_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|169aa|up_5|CP031670.1_632017_632524_+	pfam08741, YwhD, YwhD family	NA|337aa|up_4|CP031670.1_633022_634033_+	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|36aa|up_3|CP031670.1_634107_634215_+	NA	NA|139aa|up_2|CP031670.1_634307_634724_+	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|554aa|up_1|CP031670.1_634720_636382_+	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|212aa|up_0|CP031670.1_636770_637406_+	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|296aa|down_0|CP031670.1_637784_638672_+	cd01143, YvrC, Periplasmic binding protein YvrC	NA|329aa|down_1|CP031670.1_638783_639770_+	pfam01032, FecCD, FecCD transport family	NA|240aa|down_2|CP031670.1_639824_640544_+	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|267aa|down_3|CP031670.1_640527_641328_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|169aa|down_4|CP031670.1_641463_641970_+	NA	NA|239aa|down_5|CP031670.1_642131_642848_+	NA	NA|263aa|down_6|CP031670.1_643016_643805_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|125aa|down_7|CP031670.1_644055_644430_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|310aa|down_8|CP031670.1_645377_646307_-	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]	NA|75aa|down_9|CP031670.1_646501_646726_-	pfam11148, DUF2922, Protein of unknown function (DUF2922)
GCA_003425915.1_ASM342591v1	CP031670	Staphylococcus aureus strain 64 chromosome, complete genome	3	700542-700640	3	CRISPRCasFinder	no		WYL,cas3,DEDDh,DinG,csa3	Orphan	AAGAGCCCCTAATTAATAAATTAAAAGGGG	30	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA,NA|230aa|down_2|CP031670.1_702461_703151_-,NA|100aa|down_5|CP031670.1_704320_704620_+	NA|206aa|up_9|CP031670.1_689716_690334_+	COG1392, COG1392, Phosphate transport regulator (distant homolog of PhoU) [Inorganic ion transport and metabolism]	NA|336aa|up_8|CP031670.1_690349_691357_+	pfam01384, PHO4, Phosphate transporter family	NA|266aa|up_7|CP031670.1_691944_692742_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|215aa|up_6|CP031670.1_693102_693747_+	COG0670, COG0670, Integral membrane protein, interacts with FtsH [General function prediction only]	NA|717aa|up_5|CP031670.1_694443_696594_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|142aa|up_4|CP031670.1_696673_697099_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|239aa|up_3|CP031670.1_697288_698005_+	PRK12378, PRK12378, YebC/PmpR family DNA-binding transcriptional regulator	NA|158aa|up_2|CP031670.1_698004_698478_+	COG3542, COG3542, Uncharacterized conserved protein [Function unknown]	NA|215aa|up_1|CP031670.1_698830_699475_+	COG2306, COG2306, Predicted RNA-binding protein, associated with RNAses E/G family [General function prediction only]	NA|289aa|up_0|CP031670.1_699590_700457_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|407aa|down_0|CP031670.1_700657_701878_+	cd17471, MFS_Set, Sugar efflux transporter (Set) family of the Major Facilitator Superfamily of transporters	NA|163aa|down_1|CP031670.1_701874_702363_+	COG2839, COG2839, Uncharacterized protein conserved in bacteria [Function unknown]	NA|230aa|down_2|CP031670.1_702461_703151_-	NA	NA|148aa|down_3|CP031670.1_703277_703721_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|132aa|down_4|CP031670.1_703787_704183_+	PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional	NA|100aa|down_5|CP031670.1_704320_704620_+	NA	NA|181aa|down_6|CP031670.1_704699_705242_+	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|189aa|down_7|CP031670.1_705337_705904_-	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only]	NA|153aa|down_8|CP031670.1_705905_706364_-	PRK00124, PRK00124, YaiI/YqxD family protein	NA|228aa|down_9|CP031670.1_706366_707050_-	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed
GCA_003425915.1_ASM342591v1	CP031670	Staphylococcus aureus strain 64 chromosome, complete genome	4	753499-753581	4	CRISPRCasFinder	no		WYL,cas3,DEDDh,DinG,csa3	Orphan	CCAATTTCTACAGACAATGCAAGTTGG	27	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA,NA	NA|203aa|up_9|CP031670.1_739425_740034_+	pfam01063, Aminotran_4, Amino-transferase class IV	NA|237aa|up_8|CP031670.1_740393_741104_+	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]	NA|335aa|up_7|CP031670.1_741087_742092_+	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]	NA|647aa|up_6|CP031670.1_742565_744506_+	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|626aa|up_5|CP031670.1_744782_746660_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|594aa|up_4|CP031670.1_746671_748453_+	TIGR01389, recQ, ATP-dependent DNA helicase RecQ	NA|326aa|up_3|CP031670.1_748674_749652_+	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|505aa|up_2|CP031670.1_749644_751159_+	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold	NA|353aa|up_1|CP031670.1_751398_752457_+	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional	NA|181aa|up_0|CP031670.1_752807_753350_+	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]	NA|306aa|down_0|CP031670.1_754029_754947_-	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|502aa|down_1|CP031670.1_755216_756722_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|167aa|down_2|CP031670.1_757062_757563_-	COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General function prediction only]	NA|289aa|down_3|CP031670.1_757582_758449_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|133aa|down_4|CP031670.1_759249_759648_+	COG1780, NrdI, Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]	NA|702aa|down_5|CP031670.1_759610_761716_+	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|324aa|down_6|CP031670.1_761833_762805_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|338aa|down_7|CP031670.1_763470_764484_+	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]	NA|319aa|down_8|CP031670.1_764470_765427_+	COG4605, CeuC, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]	NA|254aa|down_9|CP031670.1_765423_766185_+	COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
GCA_003425915.1_ASM342591v1	CP031670	Staphylococcus aureus strain 64 chromosome, complete genome	5	794551-794631	5	CRISPRCasFinder	no	cas3	WYL,cas3,DEDDh,DinG,csa3	Unclear	TTCTTTATGTTGGGGCCCCGCCAACT	26	1	9	794577-794605|794577-794605|794577-794605|794577-794605|794577-794605|794577-794605|794577-794605|794577-794605|794577-794605	CP031670.1_2832891-2832919|CP031670.1_358873-358845|CP031670.1_358928-358900|CP031670.1_1910576-1910548|CP031670.1_843147-843175|CP031670.1_955082-955110|CP031670.1_1731891-1731919|CP031670.1_2077484-2077512|CP031670.1_2582341-2582313	NA	1	1	Unclear	WYL,cas3,DEDDh,DinG,csa3	NA,NA	cas3|361aa|up_9|CP031670.1_780095_781178_+	COG4098, comFA, Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]	NA|225aa|up_8|CP031670.1_781170_781845_+	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only]	NA|191aa|up_7|CP031670.1_781905_782478_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|844aa|up_6|CP031670.1_782891_785423_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|331aa|up_5|CP031670.1_785855_786848_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|280aa|up_4|CP031670.1_787256_788096_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_3|CP031670.1_788269_788920_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_2|CP031670.1_788916_789153_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_1|CP031670.1_789421_791407_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_0|CP031670.1_791414_794261_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|down_0|CP031670.1_794867_795800_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|down_1|CP031670.1_795805_796645_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|down_2|CP031670.1_796652_797138_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|down_3|CP031670.1_797145_798585_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|down_4|CP031670.1_798651_799587_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_5|CP031670.1_800410_801322_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_6|CP031670.1_801318_802314_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_7|CP031670.1_802423_803368_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_8|CP031670.1_803940_804528_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|290aa|down_9|CP031670.1_804770_805640_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
GCA_003425915.1_ASM342591v1	CP031670	Staphylococcus aureus strain 64 chromosome, complete genome	6	843081-843162	6	CRISPRCasFinder	no		WYL,cas3,DEDDh,DinG,csa3	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	2	843105-843138|843105-843138	CP031670.1_1418504-1418471|CP031670.1_1506856-1506889	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA|38aa|up_1|CP031670.1_841983_842097_+,NA	NA|206aa|up_9|CP031670.1_836838_837456_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_8|CP031670.1_837610_838105_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_7|CP031670.1_838503_838926_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_6|CP031670.1_839073_839790_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_5|CP031670.1_839872_840412_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_4|CP031670.1_840561_840882_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_3|CP031670.1_841025_841382_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_2|CP031670.1_841539_841920_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|38aa|up_1|CP031670.1_841983_842097_+	NA	NA|293aa|up_0|CP031670.1_842098_842977_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|130aa|down_0|CP031670.1_843715_844105_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|CP031670.1_844097_844394_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|CP031670.1_844643_845669_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|CP031670.1_845661_846357_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|CP031670.1_846374_847196_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|65aa|down_5|CP031670.1_847549_847744_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_6|CP031670.1_847976_848828_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_7|CP031670.1_849155_849917_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|down_8|CP031670.1_850014_851322_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|414aa|down_9|CP031670.1_851436_852678_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily
GCA_003425915.1_ASM342591v1	CP031670	Staphylococcus aureus strain 64 chromosome, complete genome	7	1082439-1082526	7	CRISPRCasFinder	no		WYL,cas3,DEDDh,DinG,csa3	Orphan	CCCCTAACAACTAAAAGTTGTAAGG	25	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA,NA|45aa|down_0|CP031670.1_1082535_1082670_-,NA|432aa|down_1|CP031670.1_1082821_1084117_+	NA|224aa|up_9|CP031670.1_1070229_1070901_+	PRK03619, PRK03619, phosphoribosylformylglycinamidine synthase subunit PurQ	NA|730aa|up_8|CP031670.1_1070893_1073083_+	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL	NA|495aa|up_7|CP031670.1_1073061_1074546_+	PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional	NA|343aa|up_6|CP031670.1_1074538_1075567_+	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|189aa|up_5|CP031670.1_1075569_1076136_+	COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]	NA|493aa|up_4|CP031670.1_1076150_1077629_+	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|416aa|up_3|CP031670.1_1077650_1078898_+	PRK13790, PRK13790, phosphoribosylamine--glycine ligase; Provisional	NA|269aa|up_2|CP031670.1_1079162_1079969_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|467aa|up_1|CP031670.1_1079961_1081362_-	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|192aa|up_0|CP031670.1_1081376_1081952_-	COG4721, COG4721, ABC-type cobalt transport system, predicted permease component [Inorganic ion transport and metabolism]	NA|45aa|down_0|CP031670.1_1082535_1082670_-	NA	NA|432aa|down_1|CP031670.1_1082821_1084117_+	NA	NA|391aa|down_2|CP031670.1_1084541_1085714_+	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only]	NA|181aa|down_3|CP031670.1_1085767_1086310_+	pfam05128, DUF697, Domain of unknown function (DUF697)	NA|89aa|down_4|CP031670.1_1086463_1086730_+	PRK13780, PRK13780, phosphocarrier protein HPr; Provisional	NA|573aa|down_5|CP031670.1_1086732_1088451_+	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|78aa|down_6|CP031670.1_1088687_1088921_-	cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile	NA|454aa|down_7|CP031670.1_1089118_1090480_+	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|340aa|down_8|CP031670.1_1090476_1091496_+	COG1294, AppB, Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]	NA|221aa|down_9|CP031670.1_1091628_1092291_+	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
GCA_003425915.1_ASM342591v1	CP031670	Staphylococcus aureus strain 64 chromosome, complete genome	8	1210167-1210353	1	CRT	no		WYL,cas3,DEDDh,DinG,csa3	Orphan	GGCGGGGCCCCAACATAGA	19	3	27	1210186-1210222|1210186-1210222|1210186-1210222|1210186-1210222|1210186-1210222|1210186-1210222|1210242-1210278|1210242-1210278|1210242-1210278|1210242-1210278|1210242-1210278|1210242-1210278|1210242-1210278|1210242-1210278|1210242-1210278|1210298-1210334|1210298-1210334|1210298-1210334|1210298-1210334|1210298-1210334|1210298-1210334|1210298-1210334|1210298-1210334|1210298-1210334|1210298-1210334|1210298-1210334|1210298-1210334	CP031670.1_1910545-1910581|CP031670.1_843178-843142|CP031670.1_1731922-1731886|CP031670.1_2077515-2077479|CP031670.1_2582310-2582346|CP031670.1_2832922-2832886|CP031670.1_1066186-1066150|CP031670.1_1418430-1418466|CP031670.1_2066709-2066673|CP031670.1_1506930-1506894|CP031670.1_2667521-2667485|CP031670.1_799987-799951|CP031670.1_1206274-1206310|CP031670.1_1210354-1210390|CP031670.1_2066650-2066614|CP031670.1_135469-135505|CP031670.1_636662-636698|CP031670.1_752553-752517|CP031670.1_753487-753523|CP031670.1_800043-800007|CP031670.1_1418488-1418524|CP031670.1_1506872-1506836|CP031670.1_2068166-2068130|CP031670.1_2068225-2068189|CP031670.1_1092383-1092347|CP031670.1_2557063-2557027|CP031670.1_1206330-1206366	NA	3	3	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA|169aa|up_7|CP031670.1_1204115_1204622_+,NA|62aa|up_4|CP031670.1_1206534_1206720_-,NA|78aa|up_3|CP031670.1_1207341_1207575_-,NA|49aa|up_1|CP031670.1_1209683_1209830_+,NA|66aa|up_0|CP031670.1_1209813_1210011_+,NA|76aa|down_6|CP031670.1_1217366_1217594_+	NA|110aa|up_9|CP031670.1_1202344_1202674_+	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|134aa|up_8|CP031670.1_1203042_1203444_-	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed	NA|169aa|up_7|CP031670.1_1204115_1204622_+	NA	NA|166aa|up_6|CP031670.1_1204880_1205378_+	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|117aa|up_5|CP031670.1_1205531_1205882_+	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN	NA|62aa|up_4|CP031670.1_1206534_1206720_-	NA	NA|78aa|up_3|CP031670.1_1207341_1207575_-	NA	NA|320aa|up_2|CP031670.1_1208051_1209011_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|49aa|up_1|CP031670.1_1209683_1209830_+	NA	NA|66aa|up_0|CP031670.1_1209813_1210011_+	NA	NA|239aa|down_0|CP031670.1_1210567_1211284_-	PRK13350, PRK13350, superantigen-like protein; Reviewed	NA|242aa|down_1|CP031670.1_1211391_1212117_-	PRK13349, PRK13349, superantigen-like protein; Reviewed	NA|242aa|down_2|CP031670.1_1212211_1212937_-	PRK13043, PRK13043, superantigen-like protein; Reviewed	NA|334aa|down_3|CP031670.1_1213374_1214376_+	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional	NA|312aa|down_4|CP031670.1_1214395_1215331_+	PRK12353, PRK12353, putative amino acid kinase; Reviewed	NA|519aa|down_5|CP031670.1_1215502_1217059_+	COG1288, COG1288, Predicted membrane protein [Function unknown]	NA|76aa|down_6|CP031670.1_1217366_1217594_+	NA	NA|316aa|down_7|CP031670.1_1217898_1218846_-	cd09325, TDT_C4-dicarb_trans, C4-dicarboxylate transporters of the Tellurite-resistance/Dicarboxylate Transporter (TDT) family	NA|63aa|down_8|CP031670.1_1219094_1219283_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|45aa|down_9|CP031670.1_1220194_1220329_+	pfam05480, Staph_haemo, Staphylococcus haemolytic protein
GCA_003425915.1_ASM342591v1	CP031670	Staphylococcus aureus strain 64 chromosome, complete genome	9	1910585-1910811	8	CRISPRCasFinder	no		WYL,cas3,DEDDh,DinG,csa3	Orphan	GGGCCCCAACACAGAAGCTGGCCAATAGTCAGCTTTCAATAATGTGCAAGTTGG	54	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA,NA	NA|199aa|up_9|CP031670.1_1901140_1901737_-	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed	NA|286aa|up_8|CP031670.1_1901765_1902623_-	PRK13668, PRK13668, hypothetical protein; Provisional	NA|104aa|up_7|CP031670.1_1902722_1903034_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|359aa|up_6|CP031670.1_1903098_1904175_-	cd05656, M42_Frv, M42 Peptidase, endoglucanases	NA|105aa|up_5|CP031670.1_1904258_1904573_+	COG5584, COG5584, Predicted small secreted protein [Function unknown]	NA|281aa|up_4|CP031670.1_1904697_1905540_-	cd07728, YtnP-like_MBL-fold, Bacillus subtilis YtnP and related proteins; MBL-fold metallo hydrolase domain	NA|215aa|up_3|CP031670.1_1906009_1906654_-	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed	NA|264aa|up_2|CP031670.1_1906668_1907460_-	COG0510, ycfN, Thiamine kinase and related kinases [Coenzyme transport and metabolism]	NA|283aa|up_1|CP031670.1_1908009_1908858_-	TIGR01121, D-alanine_aminotransferase, D-amino acid aminotransferase	NA|470aa|up_0|CP031670.1_1908861_1910271_-	PRK07318, PRK07318, dipeptidase PepV; Reviewed	NA|141aa|down_0|CP031670.1_1911190_1911613_-	pfam12732, YtxH, YtxH-like protein	NA|232aa|down_1|CP031670.1_1911629_1912325_-	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]	NA|554aa|down_2|CP031670.1_1912321_1913983_-	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins	NA|423aa|down_3|CP031670.1_1914389_1915658_+	pfam03486, HI0933_like, HI0933-like protein	NA|104aa|down_4|CP031670.1_1922659_1922971_-	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein	NA|806aa|down_5|CP031670.1_1922992_1925410_-	PRK00390, leuS, leucyl-tRNA synthetase; Validated	NA|394aa|down_6|CP031670.1_1925697_1926879_-	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|318aa|down_7|CP031670.1_1926988_1927942_+	COG1242, COG1242, Predicted Fe-S oxidoreductase [General function prediction only]	NA|188aa|down_8|CP031670.1_1927938_1928502_+	pfam06962, rRNA_methylase, Putative rRNA methylase	NA|134aa|down_9|CP031670.1_1928621_1929023_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family
GCA_003425915.1_ASM342591v1	CP031670	Staphylococcus aureus strain 64 chromosome, complete genome	10	2266394-2266544	9	CRISPRCasFinder	no	csa3	WYL,cas3,DEDDh,DinG,csa3	Type I-A	AACTTTAGTTGTTAGGGGCTCTTATGCA	28	0	0	NA	NA	NA	2	2	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA|77aa|up_5|CP031670.1_2261265_2261496_-,NA|364aa|up_0|CP031670.1_2265284_2266376_+,NA	NA|237aa|up_9|CP031670.1_2256875_2257586_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|CP031670.1_2257706_2258150_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|CP031670.1_2258349_2258763_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|CP031670.1_2259220_2260594_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|CP031670.1_2261265_2261496_-	NA	NA|313aa|up_4|CP031670.1_2261526_2262465_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|CP031670.1_2262899_2263565_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|CP031670.1_2263716_2264037_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|CP031670.1_2264038_2265019_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|CP031670.1_2265284_2266376_+	NA	NA|68aa|down_0|CP031670.1_2267404_2267608_-	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|379aa|down_1|CP031670.1_2267666_2268803_-	pfam02037, SAP, SAP domain	NA|286aa|down_2|CP031670.1_2269888_2270746_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_3|CP031670.1_2270813_2271596_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_4|CP031670.1_2271827_2273633_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_5|CP031670.1_2274313_2275852_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_6|CP031670.1_2275886_2278019_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_7|CP031670.1_2278030_2278465_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_8|CP031670.1_2278464_2279571_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|2479aa|down_9|CP031670.1_2279889_2287326_-	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain
