The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 2
CP031690	Haemophilus influenzae strain P617-9224 chromosome, complete genome	1848210	761285	764756	1848210		uncultured_virus(100.0%)	6	NA	NA
AXP62912.1|761285_761492_+	copper chaperone	NA	A0A218MNH0	uncultured_virus	52.2	3.0e-10
AXP62913.1|761566_761773_+	copper chaperone	NA	A0A218MNH0	uncultured_virus	50.7	6.7e-10
AXP62914.1|761846_762053_+	copper chaperone	NA	A0A218MNH0	uncultured_virus	50.7	6.7e-10
AXP62915.1|762126_762333_+	copper chaperone	NA	A0A218MNH0	uncultured_virus	52.2	3.0e-10
AXP62916.1|762406_762613_+	copper chaperone	NA	A0A218MNH0	uncultured_virus	50.7	6.7e-10
AXP62917.1|762587_764756_+	Cu(2+)-exporting ATPase	NA	A0A218MNH6	uncultured_virus	52.0	2.5e-195
>prophage 3
CP031690	Haemophilus influenzae strain P617-9224 chromosome, complete genome	1848210	1333014	1349249	1848210	terminase,head,holin	Haemophilus_phage(42.86%)	24	NA	NA
AXP63403.1|1333014_1333350_-	DUF4325 domain-containing protein	NA	A0A2H4J4X6	uncultured_Caudovirales_phage	41.5	8.1e-13
AXP63404.1|1333352_1334429_-	hypothetical protein	NA	NA	NA	NA	NA
AXP63405.1|1334480_1335179_-	XRE family transcriptional regulator	NA	Q7Y5W5	Haemophilus_phage	84.5	1.4e-112
AXP63406.1|1335289_1335478_+	DNA-binding protein	NA	Q7Y5W4	Haemophilus_phage	93.5	6.5e-28
AXP63407.1|1335526_1335967_+	hypothetical protein	NA	A0A0U4B0E3	Pseudomonas_phage	32.2	1.5e-14
AXP63408.1|1336015_1336690_+	hypothetical protein	NA	D0UIL6	Aggregatibacter_phage	67.9	6.9e-80
AXP63409.1|1336686_1337403_+	helix-turn-helix domain-containing protein	NA	D0UIL5	Aggregatibacter_phage	61.0	2.2e-60
AXP63410.1|1337387_1338023_+	replication P	NA	A0A1I9KFB0	Aeromonas_phage	24.7	4.8e-06
AXP63411.1|1338019_1338244_+	hypothetical protein	NA	A0A0M3LR43	Mannheimia_phage	47.9	1.1e-10
AXP63412.1|1338280_1338697_+	recombination protein NinB	NA	Q7Y5V7	Haemophilus_phage	84.7	1.1e-62
AXP63413.1|1339337_1340003_+	HNH endonuclease	NA	A0A2I7QND8	Vibrio_phage	42.8	2.2e-38
AXP63414.1|1340033_1340405_+	hypothetical protein	NA	NA	NA	NA	NA
AXP63415.1|1340454_1341420_-	hypothetical protein	NA	Q8HA04	Enterobacteria_phage	58.8	1.2e-88
AXP63416.1|1341777_1342446_+	hypothetical protein	NA	D0UIM5	Aggregatibacter_phage	62.3	6.7e-67
AXP63417.1|1342782_1343139_+|holin	phage holin, lambda family	holin	NA	NA	NA	NA
AXP63418.1|1343107_1343710_+	glycoside hydrolase family 19 protein	NA	Q7Y5V0	Haemophilus_phage	53.4	3.7e-56
AXP63419.1|1343702_1344026_+	DUF2570 domain-containing protein	NA	Q7Y5U9	Haemophilus_phage	54.6	7.8e-21
AXP63420.1|1343937_1344219_+	hypothetical protein	NA	Q776X1	Haemophilus_phage	73.3	9.4e-31
AXP63421.1|1344220_1344499_-	XRE family transcriptional regulator	NA	A0A1S5NNJ5	Burkholderia_phage	66.2	6.5e-16
AXP63422.1|1344543_1345056_+|terminase	terminase small subunit	terminase	A0A1X9SFE5	Acinetobacter_phage	39.2	1.0e-19
AXP63875.1|1345111_1346386_+|terminase	PBSX family phage terminase large subunit	terminase	A0A220NQL3	Acinetobacter_phage	55.0	7.9e-125
AXP63423.1|1346387_1347722_+	DUF1073 domain-containing protein	NA	Q7Y5U6	Haemophilus_phage	84.2	2.1e-213
AXP63424.1|1347621_1348932_+|head	phage head morphogenesis protein	head	Q7Y5U5	Haemophilus_phage	77.9	2.0e-107
AXP63425.1|1349072_1349249_+	DUF2213 domain-containing protein	NA	Q7Y5U2	Haemophilus_phage	93.1	8.5e-22
>prophage 4
CP031690	Haemophilus influenzae strain P617-9224 chromosome, complete genome	1848210	1358406	1367694	1848210	tRNA	Acinetobacter_phage(50.0%)	8	NA	NA
AXP63437.1|1358406_1361271_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.7	1.2e-149
AXP63438.1|1361305_1361581_-	hydrogenase maturation factor HybG	NA	NA	NA	NA	NA
AXP63439.1|1361711_1363145_-	bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF	NA	A0A0P0IR83	Acinetobacter_phage	38.7	1.3e-35
AXP63440.1|1363182_1364184_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	40.0	1.2e-46
AXP63441.1|1364236_1364623_-	tautomerase family protein	NA	NA	NA	NA	NA
AXP63442.1|1364671_1365259_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	40.0	2.2e-34
AXP63443.1|1365271_1366828_-	anthranilate synthase component I	NA	A0A0B5J984	Pandoravirus	33.2	2.4e-22
AXP63876.1|1366929_1367694_-	glycosyltransferase	NA	A7IW34	Paramecium_bursaria_Chlorella_virus	29.1	1.5e-14
>prophage 5
CP031690	Haemophilus influenzae strain P617-9224 chromosome, complete genome	1848210	1387922	1465677	1848210	tail,plate,tRNA,lysis	Escherichia_phage(13.64%)	60	NA	NA
AXP63459.1|1387922_1388864_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	83.1	9.3e-123
AXP63460.1|1388865_1389195_+	TusE/DsrC/DsvC family sulfur relay protein	NA	A0A2H4J8B6	uncultured_Caudovirales_phage	52.8	6.9e-25
AXP63461.1|1389302_1389512_+	molybdenum-pterin-binding protein	NA	NA	NA	NA	NA
AXP63462.1|1389566_1392056_+	TonB-dependent receptor	NA	NA	NA	NA	NA
AXP63463.1|1392159_1394940_+	insulinase family protein	NA	NA	NA	NA	NA
AXP63464.1|1395062_1396994_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	38.6	2.2e-131
AXP63465.1|1397278_1397863_+	FMN-dependent NADH-azoreductase	NA	NA	NA	NA	NA
AXP63466.1|1397939_1400546_-	type I DNA topoisomerase	NA	A0A1V0SB35	Catovirus	34.5	6.4e-89
AXP63467.1|1400641_1401559_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXP63468.1|1401622_1403047_-	Re/Si-specific NAD(P)(+) transhydrogenase subunit beta	NA	NA	NA	NA	NA
AXP63469.1|1403057_1404596_-	NAD(P)(+) transhydrogenase (Re/Si-specific) subunit alpha	NA	NA	NA	NA	NA
AXP63470.1|1404856_1407322_-	glycogen/starch/alpha-glucan phosphorylase	NA	A0A140XAG6	Dickeya_phage	54.2	5.0e-19
AXP63471.1|1407568_1408999_-	glycogen synthase GlgA	NA	NA	NA	NA	NA
AXP63472.1|1409106_1410441_-	glucose-1-phosphate adenylyltransferase	NA	NA	NA	NA	NA
AXP63473.1|1410430_1412407_-	glycogen debranching enzyme GlgX	NA	NA	NA	NA	NA
AXP63474.1|1412505_1414698_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
AXP63475.1|1414707_1416807_-	4-alpha-glucanotransferase	NA	NA	NA	NA	NA
AXP63476.1|1416868_1417333_-	YcgN family cysteine cluster protein	NA	NA	NA	NA	NA
AXP63477.1|1417398_1419066_-|tRNA	glutamine--tRNA ligase	tRNA	A0A222YZ70	Escherichia_phage	77.5	8.1e-255
AXP63478.1|1419485_1420961_-	ribonuclease G	NA	NA	NA	NA	NA
AXP63479.1|1421076_1422591_+	sodium/proline symporter PutP	NA	NA	NA	NA	NA
AXP63480.1|1422587_1423553_+|tRNA	tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	tRNA	NA	NA	NA	NA
AXP63481.1|1423595_1424474_-	cytidine deaminase	NA	NA	NA	NA	NA
AXP63482.1|1424747_1425230_+	DNA starvation/stationary phase protection protein	NA	NA	NA	NA	NA
AXP63483.1|1425706_1426945_-	peptidase T	NA	NA	NA	NA	NA
AXP63484.1|1427210_1428359_+	spermidine/putrescine ABC transporter ATP-binding protein PotA	NA	Q6GZ03	Mycoplasma_phage	37.1	1.9e-29
AXP63485.1|1428342_1429203_+	spermidine/putrescine ABC transporter permease	NA	Q6GZ02	Mycoplasma_phage	28.2	4.5e-15
AXP63486.1|1429202_1429973_+	spermidine/putrescine ABC transporter permease PotC	NA	NA	NA	NA	NA
AXP63487.1|1430103_1431186_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
AXP63488.1|1431266_1433210_-	ABC transporter ATP-binding protein	NA	A0A2K9L0W2	Tupanvirus	29.8	3.2e-53
AXP63489.1|1433303_1434689_-	deoxyguanosinetriphosphate triphosphohydrolase family protein	NA	NA	NA	NA	NA
AXP63490.1|1434781_1435477_-|lysis	CidB/LrgB family autolysis modulator	lysis	NA	NA	NA	NA
AXP63491.1|1435495_1435918_-	hypothetical protein	NA	NA	NA	NA	NA
AXP63878.1|1436053_1436515_+	thermonuclease family protein	NA	A0A0R6PHV6	Moraxella_phage	47.0	5.9e-30
AXP63492.1|1436516_1437716_+	cysteine desulfurase	NA	Q2XUY6	environmental_halophage	31.6	2.2e-60
AXP63493.1|1437712_1438093_+	hypothetical protein	NA	NA	NA	NA	NA
AXP63494.1|1438083_1438869_+	hypothetical protein	NA	NA	NA	NA	NA
AXP63495.1|1438995_1439835_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	38.9	6.1e-41
AXP63496.1|1439867_1441001_-	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA	NA
AXP63497.1|1441081_1442002_-|tRNA	tRNA pseudouridine(55) synthase TruB	tRNA	NA	NA	NA	NA
AXP63498.1|1442001_1442388_-	30S ribosome-binding factor RbfA	NA	NA	NA	NA	NA
AXP63499.1|1442552_1444223_+	SAM-dependent DNA methyltransferase	NA	A0A2H4PQP4	Staphylococcus_phage	30.5	1.4e-49
AXP63500.1|1444215_1445481_+	restriction endonuclease subunit S	NA	NA	NA	NA	NA
AXP63501.1|1445473_1446520_+	hypothetical protein	NA	NA	NA	NA	NA
AXP63879.1|1446521_1449689_+	type I restriction endonuclease subunit R	NA	A0A220A398	Liberibacter_phage	30.6	9.5e-79
AXP63502.1|1449767_1452302_-	translation initiation factor IF-2	NA	A0A2H4UTS4	Bodo_saltans_virus	26.4	1.8e-27
AXP63503.1|1452313_1453801_-	transcription termination/antitermination protein NusA	NA	NA	NA	NA	NA
AXP63504.1|1453817_1454273_-	ribosome maturation factor RimP	NA	NA	NA	NA	NA
AXP63505.1|1455934_1456699_-	hypothetical protein	NA	NA	NA	NA	NA
AXP63506.1|1456702_1457230_-	hypothetical protein	NA	NA	NA	NA	NA
AXP63880.1|1457239_1458379_-	hypothetical protein	NA	NA	NA	NA	NA
AXP63507.1|1458395_1458764_-	hypothetical protein	NA	NA	NA	NA	NA
AXP63508.1|1458777_1459599_-	hypothetical protein	NA	NA	NA	NA	NA
AXP63509.1|1459655_1460159_-	enoyl-CoA hydratase	NA	F6MIM0	Haemophilus_phage	63.6	1.7e-51
AXP63510.1|1460155_1460758_-	hypothetical protein	NA	Q94MX9	Haemophilus_virus	90.0	1.7e-93
AXP63511.1|1460769_1463292_-|tail	phage tail protein	tail	Q94MY0	Haemophilus_virus	65.4	2.2e-243
AXP63512.1|1463300_1463837_-|tail	phage tail protein I	tail	M1T2R2	Escherichia_phage	52.5	1.6e-50
AXP63513.1|1463826_1464741_-|plate	baseplate assembly protein	plate	Q19UQ5	Mannheimia_phage	59.5	5.1e-94
AXP63514.1|1464737_1465076_-|plate	baseplate assembly protein W	plate	Q19UQ6	Mannheimia_phage	56.6	3.4e-19
AXP63515.1|1465077_1465677_-|plate	phage baseplate assembly protein V	plate	A0A0M3LPY9	Mannheimia_phage	66.0	4.2e-44
>prophage 6
CP031690	Haemophilus influenzae strain P617-9224 chromosome, complete genome	1848210	1470627	1506492	1848210	capsid,head,portal,tRNA,tail,protease,terminase,lysis	Mannheimia_phage(56.25%)	35	NA	NA
AXP63520.1|1470627_1470801_-	hypothetical protein	NA	Q19UR2	Mannheimia_phage	53.3	3.2e-05
AXP63521.1|1470903_1471215_+	hypothetical protein	NA	NA	NA	NA	NA
AXP63522.1|1471225_1471408_-	hypothetical protein	NA	Q19UR2	Mannheimia_phage	47.8	8.8e-06
AXP63523.1|1471511_1471859_+	hypothetical protein	NA	NA	NA	NA	NA
AXP63524.1|1471859_1472321_-	phage virion morphogenesis protein	NA	A0A2H4J927	uncultured_Caudovirales_phage	48.9	1.5e-25
AXP63525.1|1472320_1472791_-|tail	phage tail protein	tail	E5G6N3	Salmonella_phage	47.8	1.5e-28
AXP63526.1|1472787_1473003_-	TraR/DksA family transcriptional regulator	NA	F1BUS2	Erwinia_phage	50.0	1.1e-10
AXP63527.1|1472999_1473263_-	hypothetical protein	NA	NA	NA	NA	NA
AXP63528.1|1473177_1473528_-	chemotaxis protein	NA	NA	NA	NA	NA
AXP63529.1|1473512_1474031_-	lysozyme	NA	A0A0M3LPQ1	Mannheimia_phage	46.6	2.5e-37
AXP63530.1|1474023_1474245_-|lysis	lysis protein	lysis	NA	NA	NA	NA
AXP63531.1|1474246_1474456_-|tail	phage tail protein	tail	NA	NA	NA	NA
AXP63532.1|1474455_1474962_-|head	phage head protein	head	A0A0M3LNL8	Mannheimia_phage	51.0	2.8e-33
AXP63533.1|1475255_1475906_-|terminase	terminase	terminase	Q19US0	Mannheimia_phage	46.0	4.1e-45
AXP63534.1|1475917_1476967_-|capsid	phage major capsid protein, P2 family	capsid	Q19UT3	Mannheimia_phage	51.9	2.6e-89
AXP63535.1|1476988_1477804_-|capsid	capsid scaffolding protein	capsid	A0A0M3LNM2	Mannheimia_phage	60.5	6.9e-66
AXP63536.1|1477968_1479750_+|terminase	terminase	terminase	A0A0M3LRV4	Mannheimia_phage	65.2	1.6e-216
AXP63537.1|1479759_1480770_+|portal	phage portal protein	portal	Q19UT6	Mannheimia_phage	60.4	1.8e-116
AXP63538.1|1481477_1482161_-	acylneuraminate cytidylyltransferase	NA	NA	NA	NA	NA
AXP63539.1|1482265_1482928_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
AXP63540.1|1482974_1484087_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
AXP63541.1|1484237_1486286_+|tRNA	methionine--tRNA ligase	tRNA	A0A2K9V939	Bandra_megavirus	29.3	2.2e-60
AXP63542.1|1486396_1487257_+	S-adenosyl-L-methionine-dependent methyltransferase TehB	NA	NA	NA	NA	NA
AXP63543.1|1487300_1488002_-	hydroxyacylglutathione hydrolase	NA	A0A1X9I5D3	Streptococcus_phage	28.5	1.3e-07
AXP63544.1|1488053_1488860_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
AXP63881.1|1489179_1489572_+	hypothetical protein	NA	NA	NA	NA	NA
AXP63545.1|1489708_1491472_+	30S ribosomal protein S12 methylthiotransferase accessory protein YcaO	NA	NA	NA	NA	NA
AXP63546.1|1492076_1494719_+	DNA topoisomerase (ATP-hydrolyzing) subunit A	NA	G3M9Z5	Bacillus_virus	32.3	2.1e-103
AXP63547.1|1494773_1495850_-	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
AXP63548.1|1496007_1496688_+	vancomycin high temperature exclusion protein	NA	NA	NA	NA	NA
AXP63549.1|1496975_1498289_-	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
AXP63550.1|1498281_1499172_-	acetyl-CoA carboxylase carboxyl transferase subunit beta	NA	NA	NA	NA	NA
AXP63551.1|1499365_1500757_+|protease	DegQ family serine endoprotease	protease	A0A1B1IT49	uncultured_Mediterranean_phage	31.2	7.2e-23
AXP63552.1|1500809_1504250_-	transcription-repair coupling factor	NA	NA	NA	NA	NA
AXP63553.1|1504521_1506492_-|tRNA	tRNA(Met) cytidine acetyltransferase	tRNA	NA	NA	NA	NA
>prophage 7
CP031690	Haemophilus influenzae strain P617-9224 chromosome, complete genome	1848210	1670851	1679360	1848210		uncultured_Caudovirales_phage(16.67%)	9	NA	NA
AXP63689.1|1670851_1671535_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	50.7	2.3e-54
AXP63690.1|1671527_1671953_+	6-carboxytetrahydropterin synthase QueD	NA	A0A1U9WRB3	Streptococcus_virus	42.0	2.3e-20
AXP63691.1|1671953_1672589_+	7-carboxy-7-deazaguanine synthase	NA	S4TZT1	uncultured_phage	30.3	8.7e-16
AXP63888.1|1672978_1673212_+	branched-chain amino acid aminotransferase	NA	NA	NA	NA	NA
AXP63692.1|1673195_1675379_+	DNA helicase II	NA	A7KV33	Bacillus_phage	37.6	6.7e-116
AXP63693.1|1675498_1676470_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
AXP63694.1|1676484_1677372_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
AXP63695.1|1677381_1678374_+	dipeptide transport ATP-binding protein DppD	NA	G3M9Y6	Bacillus_virus	30.8	2.0e-14
AXP63696.1|1678376_1679360_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.8	1.8e-20
