The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP031681	Haemophilus influenzae strain P669-6977 chromosome, complete genome	2013003	20096	87941	2013003	transposase,tail,tRNA,plate,head	Haemophilus_phage(46.81%)	83	NA	NA
AXP40634.1|20096_21077_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
AXP38772.1|21223_22111_-	50S ribosomal protein L11 methyltransferase	NA	NA	NA	NA	NA
AXP38773.1|22145_23018_-	EamA family transporter	NA	NA	NA	NA	NA
AXP38774.1|23137_24592_-	sodium:pantothenate symporter	NA	NA	NA	NA	NA
AXP38775.1|24588_24846_-	DUF997 family protein	NA	NA	NA	NA	NA
AXP38776.1|25050_26397_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
AXP38777.1|26573_27041_-	acetyl-CoA carboxylase biotin carboxyl carrier protein subunit	NA	NA	NA	NA	NA
AXP38778.1|27192_27642_-	type II 3-dehydroquinate dehydratase	NA	NA	NA	NA	NA
AXP38779.1|27699_28725_-	o-succinylbenzoate synthase	NA	NA	NA	NA	NA
AXP38780.1|28757_29615_-	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA	NA
AXP40635.1|29630_29771_-	hypothetical protein	NA	NA	NA	NA	NA
AXP38781.1|29760_30327_+	hypothetical protein	NA	NA	NA	NA	NA
AXP38782.1|30398_30662_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
AXP38783.1|30928_32503_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
AXP38784.1|32537_33476_+	bifunctional riboflavin kinase/FAD synthetase	NA	A0A1V0SD03	Indivirus	31.1	1.6e-05
AXP38785.1|33504_36330_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	26.6	8.5e-79
AXP38786.1|36446_36797_+	histidine triad nucleotide-binding protein	NA	NA	NA	NA	NA
AXP38787.1|36796_37147_+	DUF1425 domain-containing protein	NA	NA	NA	NA	NA
AXP38788.1|37150_38206_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
AXP38789.1|38198_39374_+	23S rRNA (uracil(747)-C(5))-methyltransferase RlmC	NA	A0A2K5B251	Erysipelothrix_phage	28.6	1.6e-23
AXP38790.1|39738_40413_-	cAMP-activated global transcriptional regulator CRP	NA	NA	NA	NA	NA
AXP38791.1|40397_40649_-	YheU family protein	NA	NA	NA	NA	NA
AXP38792.1|40670_41327_-	nucleoid occlusion factor SlmA	NA	NA	NA	NA	NA
AXP38793.1|41330_41786_-	dUTP diphosphatase	NA	Q2NP83	Xanthomonas_phage	60.1	9.5e-49
AXP38794.1|41833_43036_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	32.1	9.6e-40
AXP38795.1|44081_44318_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
AXP38796.1|44329_44500_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
AXP38797.1|44846_46211_+	diaminobutyrate--2-oxoglutarate transaminase	NA	A0A1V0SKB7	Klosneuvirus	26.5	1.8e-26
AXP38798.1|46357_46591_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA	NA
AXP38799.1|46590_46989_+|tRNA	tRNA(fMet)-specific endonuclease VapC	tRNA	NA	NA	NA	NA
AXP38800.1|47008_48544_+	aspartate aminotransferase family protein	NA	NA	NA	NA	NA
AXP38801.1|48985_49249_+	hypothetical protein	NA	F6MIM3	Haemophilus_phage	77.9	5.5e-33
AXP38802.1|49288_50134_-	hypothetical protein	NA	F6MIM2	Haemophilus_phage	72.5	3.3e-119
AXP38803.1|50195_50315_-	Com family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
AXP38804.1|50490_50979_-	enoyl-CoA hydratase	NA	F6MIM0	Haemophilus_phage	56.2	1.9e-47
AXP38805.1|50971_51598_-	hypothetical protein	NA	Q94MX9	Haemophilus_virus	44.2	4.7e-30
AXP38806.1|51600_53301_-|tail	phage tail protein	tail	Q94MY0	Haemophilus_virus	57.0	1.5e-91
AXP38807.1|53315_53894_-	DUF2313 domain-containing protein	NA	F6MIL7	Haemophilus_phage	70.9	8.3e-74
AXP38808.1|53893_54958_-|plate	baseplate J/gp47 family protein	plate	F6MIL6	Haemophilus_phage	64.9	2.3e-125
AXP38809.1|54972_55323_-	hypothetical protein	NA	A0A0M3LQK5	Mannheimia_phage	75.0	2.2e-45
AXP38810.1|55389_56025_-|plate	phage baseplate assembly protein V	plate	F6MIL4	Haemophilus_phage	68.9	8.3e-59
AXP38811.1|56026_57145_-|tail	phage tail protein	tail	A0A0M3LPS4	Mannheimia_phage	71.6	1.3e-144
AXP38812.1|57128_58520_-	phage morphogenesis protein	NA	F6MIL2	Haemophilus_phage	41.8	5.6e-100
AXP38813.1|58522_60793_-|tail	phage tail tape measure protein	tail	A0A0M3LPB6	Mannheimia_phage	45.9	2.1e-144
AXP38814.1|60839_61049_-	hypothetical protein	NA	NA	NA	NA	NA
AXP38815.1|61069_61417_-	hypothetical protein	NA	A0A0M3LSI2	Mannheimia_phage	52.7	1.7e-21
AXP38816.1|61416_61785_-|tail	phage tail protein	tail	A0A0M3LRV6	Mannheimia_phage	54.8	9.8e-28
AXP38817.1|61794_63204_-|tail	phage tail protein	tail	A0A0M3LQC3	Mannheimia_phage	66.2	4.9e-160
AXP38818.1|63196_63373_-	DUF2635 domain-containing protein	NA	A0A0M3LQM9	Mannheimia_phage	61.1	8.8e-11
AXP38819.1|63369_64014_-	DUF1834 family protein	NA	A0A0M3LQJ7	Mannheimia_phage	44.4	2.9e-43
AXP38820.1|63997_64420_-	DUF1320 domain-containing protein	NA	A0A0M3LP98	Mannheimia_phage	61.0	7.5e-40
AXP38821.1|64423_64729_-	hypothetical protein	NA	B7SDP3	Haemophilus_phage	44.4	6.0e-15
AXP38822.1|64764_65685_-|head	head protein	head	B7SDP1	Haemophilus_phage	71.7	4.6e-127
AXP38823.1|65684_66734_-	I protein	NA	B7SDN9	Haemophilus_phage	49.9	1.0e-74
AXP38824.1|66987_67473_-	phage virion morphogenesis protein	NA	B7SDN8	Haemophilus_phage	51.6	1.0e-32
AXP38825.1|68844_70482_-	DUF935 domain-containing protein	NA	B7SDN1	Haemophilus_phage	66.4	6.0e-202
AXP38826.1|70484_72128_-	hypothetical protein	NA	B7SDN0	Haemophilus_phage	79.4	2.0e-250
AXP38827.1|72277_72778_-	DUF1804 family protein	NA	F6MIK6	Haemophilus_phage	51.8	7.0e-45
AXP38828.1|72779_73046_-	hypothetical protein	NA	NA	NA	NA	NA
AXP38829.1|73045_73303_-	hypothetical protein	NA	NA	NA	NA	NA
AXP38830.1|73426_73684_-	DUF2681 domain-containing protein	NA	NA	NA	NA	NA
AXP38831.1|73683_73974_-	DUF2644 domain-containing protein	NA	F6MIK0	Haemophilus_phage	58.7	3.3e-15
AXP38832.1|74127_74631_-	hypothetical protein	NA	A0A0M3LSH2	Mannheimia_phage	66.2	1.0e-56
AXP38833.1|74724_75150_-	mor transcription activator family protein	NA	F6MIJ8	Haemophilus_phage	48.9	9.9e-32
AXP38834.1|75262_75772_-	hypothetical protein	NA	F6MIJ7	Haemophilus_phage	43.4	3.6e-28
AXP38835.1|75831_76233_-	regulatory protein GemA	NA	F6MIJ6	Haemophilus_phage	44.4	1.8e-19
AXP38836.1|76222_76771_-	hypothetical protein	NA	A0A0M3LPP6	Mannheimia_phage	50.3	9.7e-48
AXP38837.1|76883_77171_-	hypothetical protein	NA	NA	NA	NA	NA
AXP38838.1|77174_77405_-	DUF551 domain-containing protein	NA	NA	NA	NA	NA
AXP38839.1|77405_77780_-	hypothetical protein	NA	F6MIJ4	Haemophilus_phage	49.2	4.5e-28
AXP38840.1|77888_78269_-	hypothetical protein	NA	NA	NA	NA	NA
AXP38841.1|78271_78445_-	FMN-dependent NADH-azoreductase	NA	NA	NA	NA	NA
AXP38842.1|78615_78813_-	ANR family transcriptional regulator	NA	NA	NA	NA	NA
AXP38843.1|78998_79616_-	DUF3164 family protein	NA	A0A0M3LQ92	Mannheimia_phage	59.6	3.6e-67
AXP38844.1|79616_79808_-	HTH domain-containing protein	NA	F6MII8	Haemophilus_phage	57.6	9.5e-11
AXP38845.1|79816_80113_-	hypothetical protein	NA	NA	NA	NA	NA
AXP38846.1|80123_81005_-	helix-turn-helix domain-containing protein	NA	A0A0M3LP72	Mannheimia_phage	76.1	7.6e-119
AXP38847.1|81016_82999_-|transposase	transposase	transposase	A0A0M3LPN5	Mannheimia_phage	54.6	2.3e-184
AXP38848.1|83042_83321_-	DNA-binding protein	NA	F6MII4	Haemophilus_phage	58.8	1.0e-16
AXP38849.1|83496_84213_+	helix-turn-helix domain-containing protein	NA	F6MII3	Haemophilus_phage	33.3	4.2e-27
AXP38850.1|84910_85726_+	formamidopyrimidine-DNA glycosylase	NA	A0A127AWE5	Bacillus_phage	30.7	2.3e-21
AXP38851.1|85799_86822_-	outer membrane-stress sensor serine endopeptidase DegS	NA	A0A1B1IT49	uncultured_Mediterranean_phage	28.7	2.6e-17
AXP38852.1|86822_87941_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A1V0SE20	Indivirus	33.2	2.1e-49
>prophage 2
CP031681	Haemophilus influenzae strain P669-6977 chromosome, complete genome	2013003	404141	440547	2013003	transposase,plate,head,tail	Haemophilus_phage(62.16%)	50	NA	NA
AXP39137.1|404141_404855_-	helix-turn-helix domain-containing protein	NA	F6MII3	Haemophilus_phage	43.2	5.7e-40
AXP39138.1|405053_405317_+	transcriptional regulator	NA	F6MII4	Haemophilus_phage	73.6	1.7e-29
AXP39139.1|405331_407299_+|transposase	transposase	transposase	F6MII5	Haemophilus_phage	60.7	9.6e-231
AXP39140.1|407291_407708_+	hypothetical protein	NA	NA	NA	NA	NA
AXP39141.1|407759_408641_+	transcriptional regulator	NA	A0A0M3LP72	Mannheimia_phage	64.7	2.5e-98
AXP39142.1|408651_408948_+	hypothetical protein	NA	NA	NA	NA	NA
AXP39143.1|408956_409148_+	HTH domain-containing protein	NA	F6MII8	Haemophilus_phage	57.6	9.5e-11
AXP39144.1|409148_409766_+	DUF3164 family protein	NA	A0A0M3LQ92	Mannheimia_phage	59.6	3.6e-67
AXP39145.1|409949_410159_+	ANR family transcriptional regulator	NA	NA	NA	NA	NA
AXP39146.1|410312_410567_+	hypothetical protein	NA	NA	NA	NA	NA
AXP39147.1|410833_411394_+	hypothetical protein	NA	A0A0M3LP85	Mannheimia_phage	25.9	2.5e-14
AXP39148.1|411397_411646_+	hypothetical protein	NA	NA	NA	NA	NA
AXP39149.1|411755_411995_+	hypothetical protein	NA	NA	NA	NA	NA
AXP39150.1|411991_412540_+	hypothetical protein	NA	A0A0M3LPP6	Mannheimia_phage	50.3	1.7e-47
AXP39151.1|412529_412931_+	regulatory protein GemA	NA	F6MIJ6	Haemophilus_phage	42.1	5.9e-18
AXP39152.1|412984_413884_+	hypothetical protein	NA	NA	NA	NA	NA
AXP39153.1|413969_414398_+	mor transcription activator family protein	NA	F6MIJ8	Haemophilus_phage	42.3	4.3e-27
AXP39154.1|414477_414984_+	hypothetical protein	NA	A0A0M3LSH2	Mannheimia_phage	67.9	2.5e-58
AXP39155.1|415137_415428_+	DUF2644 domain-containing protein	NA	F6MIK0	Haemophilus_phage	61.3	2.3e-16
AXP39156.1|415427_415685_+	DUF2681 domain-containing protein	NA	NA	NA	NA	NA
AXP39157.1|415808_416066_+	hypothetical protein	NA	NA	NA	NA	NA
AXP39158.1|416065_416332_+	hypothetical protein	NA	NA	NA	NA	NA
AXP39159.1|416333_416837_+	DUF1804 family protein	NA	F6MIK6	Haemophilus_phage	51.8	7.1e-45
AXP39160.1|418630_420253_+	DUF935 domain-containing protein	NA	B7SDN1	Haemophilus_phage	68.7	2.8e-204
AXP39161.1|420236_421538_+|head	phage head morphogenesis protein	head	B7SDN5	Haemophilus_phage	70.3	1.4e-174
AXP39162.1|421673_422090_+	phage virion morphogenesis protein	NA	B7SDN8	Haemophilus_phage	67.4	2.8e-47
AXP39163.1|422371_423409_+	I protein	NA	B7SDN9	Haemophilus_phage	47.0	1.9e-68
AXP39164.1|423408_424332_+|head	head protein	head	B7SDP1	Haemophilus_phage	74.9	7.9e-135
AXP39165.1|424395_424701_+	hypothetical protein	NA	B7SDP3	Haemophilus_phage	55.7	3.3e-21
AXP39166.1|424710_425142_+	DUF1320 domain-containing protein	NA	B7SDP4	Haemophilus_phage	60.9	4.6e-37
AXP39167.1|425125_425788_+	DUF1834 family protein	NA	A0A0M3LQJ7	Mannheimia_phage	45.0	9.3e-45
AXP39168.1|425759_425942_+	DUF2635 domain-containing protein	NA	A0A0M3LQM9	Mannheimia_phage	64.8	8.2e-12
AXP39169.1|425934_427350_+|tail	phage tail protein	tail	B7SDP8	Haemophilus_phage	62.2	3.3e-156
AXP39170.1|427359_427731_+|tail	phage tail protein	tail	A0A0M3LRV6	Mannheimia_phage	65.0	1.2e-36
AXP39171.1|427730_428072_+	hypothetical protein	NA	A0A0M3LSI2	Mannheimia_phage	49.5	5.3e-20
AXP39172.1|428086_428293_+	hypothetical protein	NA	NA	NA	NA	NA
AXP39173.1|428339_430628_+|tail	phage tail tape measure protein	tail	A0A0M3LPB6	Mannheimia_phage	33.6	3.7e-93
AXP39174.1|430630_431965_+	phage morphogenesis protein	NA	F6MIL2	Haemophilus_phage	44.7	3.5e-107
AXP39175.1|431954_433079_+|tail	phage tail protein	tail	F6MIL3	Haemophilus_phage	72.1	1.6e-145
AXP39176.1|433088_433724_+|plate	phage baseplate assembly protein V	plate	A0A0M3LPA3	Mannheimia_phage	58.7	2.1e-62
AXP39177.1|433793_434144_+	hypothetical protein	NA	A0A0M3LQK5	Mannheimia_phage	75.0	1.4e-44
AXP39178.1|434158_435223_+|plate	baseplate J/gp47 family protein	plate	F6MIL6	Haemophilus_phage	66.6	3.7e-128
AXP39179.1|435242_435815_+	DUF2313 domain-containing protein	NA	F6MIL7	Haemophilus_phage	62.9	5.3e-65
AXP39180.1|435818_437933_+|tail	phage tail protein	tail	Q94MY0	Haemophilus_virus	71.2	1.3e-244
AXP39181.1|437944_438547_+	hypothetical protein	NA	Q94MX9	Haemophilus_virus	92.5	1.2e-96
AXP39182.1|438543_439044_+	enoyl-CoA hydratase	NA	F6MIM0	Haemophilus_phage	64.3	2.7e-52
AXP39183.1|439024_439228_-	hypothetical protein	NA	NA	NA	NA	NA
AXP39184.1|439218_439338_+	Com family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
AXP39185.1|439399_440245_+	hypothetical protein	NA	F6MIM2	Haemophilus_phage	72.8	1.9e-119
AXP39186.1|440283_440547_-	hypothetical protein	NA	F6MIM3	Haemophilus_phage	79.1	1.4e-33
>prophage 3
CP031681	Haemophilus influenzae strain P669-6977 chromosome, complete genome	2013003	700618	798715	2013003	portal,integrase,terminase,tail,tRNA,protease	Haemophilus_phage(10.42%)	115	711938:711955	737122:737139
AXP39427.1|700618_701203_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
AXP39428.1|701250_702342_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
AXP39429.1|702415_704296_+	acyltransferase	NA	A0A1R3Y5Q6	Salmonella_virus	35.9	1.4e-48
AXP39430.1|704338_705481_-	ribonuclease D	NA	NA	NA	NA	NA
AXP39431.1|705536_707225_-	long-chain-fatty-acid--CoA ligase FadD	NA	A0A2H4PQM9	Staphylococcus_phage	26.0	3.9e-31
AXP39432.1|707267_707819_-	Slp family lipoprotein	NA	NA	NA	NA	NA
AXP39433.1|707843_708554_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	tRNA	NA	NA	NA	NA
AXP39434.1|708566_710489_-	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	32.9	4.7e-97
AXP39435.1|710815_711226_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
AXP39436.1|711242_711929_+	protein TolQ	NA	NA	NA	NA	NA
711938:711955	attL	AAAATTGACCGCACTTTG	NA	NA	NA	NA
AXP39437.1|711999_712419_+	protein TolR	NA	NA	NA	NA	NA
AXP39438.1|712434_713709_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
AXP39439.1|713750_715034_+	protein TolB	NA	NA	NA	NA	NA
AXP39440.1|715057_715519_+	outer membrane protein P6	NA	NA	NA	NA	NA
AXP39441.1|715952_716978_-|integrase	site-specific integrase	integrase	K7PKD7	Enterobacteria_phage	35.4	7.4e-57
AXP39442.1|716875_717190_-	DNA-binding protein	NA	NA	NA	NA	NA
AXP39443.1|717316_717604_-	hypothetical protein	NA	NA	NA	NA	NA
AXP39444.1|717607_717877_-	hypothetical protein	NA	NA	NA	NA	NA
AXP40643.1|718141_718630_-	hypothetical protein	NA	NA	NA	NA	NA
AXP39445.1|718746_719163_-	hypothetical protein	NA	E5E463	Acinetobacter_phage	65.2	1.3e-07
AXP39446.1|719166_719820_-	hypothetical protein	NA	A0A0M3LNU4	Mannheimia_phage	35.1	1.9e-05
AXP39447.1|719870_721034_-	DNA (cytosine-5-)-methyltransferase	NA	A0A2I7RFJ9	Vibrio_phage	46.4	7.5e-90
AXP39448.1|721041_721401_-	hypothetical protein	NA	NA	NA	NA	NA
AXP39449.1|721397_721643_-	hypothetical protein	NA	NA	NA	NA	NA
AXP39450.1|721639_722536_-	recombination-associated protein RdgC	NA	S4TWL4	Salmonella_phage	43.7	8.4e-57
AXP39451.1|722660_723521_-	hypothetical protein	NA	A0A0U3TGV3	Pseudomonas_phage	68.0	1.7e-35
AXP39452.1|723582_724017_-	single-stranded DNA-binding protein	NA	A0A059WRL7	Vibrio_phage	36.2	7.5e-19
AXP39453.1|724016_724667_-	translocation protein TolB precursor	NA	A0A0M3LP90	Mannheimia_phage	70.6	5.8e-84
AXP39454.1|725601_725895_-	hypothetical protein	NA	NA	NA	NA	NA
AXP39455.1|725891_726236_-	hypothetical protein	NA	NA	NA	NA	NA
AXP39456.1|726249_726987_-	site-specific DNA-methyltransferase	NA	A0A0E3U2R2	Fusobacterium_phage	77.5	5.2e-113
AXP39457.1|727077_728109_-	endonuclease	NA	D0UIK6	Aggregatibacter_phage	82.8	5.2e-42
AXP39458.1|728098_728350_-	hypothetical protein	NA	NA	NA	NA	NA
AXP39459.1|728333_728513_+	hypothetical protein	NA	NA	NA	NA	NA
AXP39460.1|728481_728799_-	hypothetical protein	NA	NA	NA	NA	NA
AXP39461.1|728966_729188_-	hypothetical protein	NA	NA	NA	NA	NA
AXP39462.1|729202_729373_+	DUF1508 domain-containing protein	NA	NA	NA	NA	NA
AXP39463.1|729928_730849_-	DUF3800 domain-containing protein	NA	A5X9G9	Aeromonas_virus	43.7	5.1e-57
AXP39464.1|731037_731739_-	helix-turn-helix transcriptional regulator	NA	A0A0U4JEE2	Pseudomonas_phage	24.4	1.6e-15
AXP39465.1|731887_732103_+	helix-turn-helix domain-containing protein	NA	G8C7U2	Escherichia_phage	50.0	2.9e-08
AXP39466.1|732176_732884_+	hypothetical protein	NA	Q7Y5W2	Haemophilus_phage	52.3	1.8e-46
AXP39467.1|732880_733639_+	helix-turn-helix domain-containing protein	NA	D0UIL5	Aggregatibacter_phage	67.8	1.0e-63
AXP39468.1|733623_734259_+	replication P	NA	NA	NA	NA	NA
AXP39469.1|734255_734480_+	hypothetical protein	NA	A0A0M3LR43	Mannheimia_phage	47.9	1.1e-10
AXP39470.1|734516_734936_+	recombination protein NinB	NA	Q7Y5V7	Haemophilus_phage	86.2	1.9e-64
AXP39471.1|735024_735561_+	recombination protein NinG	NA	D0UIK8	Aggregatibacter_phage	68.6	7.0e-59
AXP39472.1|735569_736088_+	antitermination protein	NA	NA	NA	NA	NA
AXP39473.1|736348_736600_+	hypothetical protein	NA	NA	NA	NA	NA
AXP39474.1|736580_737123_+	lysozyme	NA	A0A0M3LPQ1	Mannheimia_phage	51.4	6.9e-46
AXP39475.1|737095_737431_+	DUF2570 domain-containing protein	NA	Q7Y5U9	Haemophilus_phage	50.0	1.9e-17
737122:737139	attR	AAAATTGACCGCACTTTG	NA	NA	NA	NA
AXP39476.1|737342_737624_+	hypothetical protein	NA	Q776X1	Haemophilus_phage	73.3	1.6e-30
AXP39477.1|737894_738368_+	DUF1441 family protein	NA	K7PJY2	Enterobacterial_phage	53.0	1.9e-39
AXP39478.1|738370_740494_+|terminase	phage terminase large subunit family protein	terminase	K7PH52	Enterobacterial_phage	66.5	1.4e-272
AXP39479.1|740484_740727_+	hypothetical protein	NA	NA	NA	NA	NA
AXP39480.1|740729_742253_+|portal	phage portal protein	portal	S5MW34	Escherichia_phage	57.5	2.7e-156
AXP40644.1|742203_744231_+|protease	Clp protease ClpP	protease	A0A1W6JT88	Pseudomonas_phage	57.0	5.7e-202
AXP39481.1|744309_744633_+	DUF2190 family protein	NA	NA	NA	NA	NA
AXP39482.1|744613_744925_+	hypothetical protein	NA	NA	NA	NA	NA
AXP39483.1|744927_745458_+|tail	phage tail protein	tail	M9NZH5	Enterobacteria_phage	42.4	2.9e-17
AXP39484.1|745466_745877_+|tail	phage tail protein	tail	NA	NA	NA	NA
AXP39485.1|745879_746530_+	hypothetical protein	NA	NA	NA	NA	NA
AXP39486.1|746804_747212_+	hypothetical protein	NA	NA	NA	NA	NA
AXP39487.1|747256_747484_+	DUF4035 domain-containing protein	NA	NA	NA	NA	NA
AXP39488.1|747552_747936_+	diaminopimelate decarboxylase	NA	NA	NA	NA	NA
AXP39489.1|747919_748222_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AXP40645.1|748237_748474_+	hypothetical protein	NA	NA	NA	NA	NA
AXP39490.1|748525_751918_+|tail	phage tail tape measure protein	tail	A0A2P1CKJ3	Pantoea_phage	24.0	3.5e-39
AXP39491.1|751926_752259_+|tail	phage tail protein	tail	Q5G8W6	Enterobacteria_phage	37.0	4.2e-14
AXP39492.1|752768_753920_+	type I restriction endonuclease subunit R	NA	A0A1S5SAB0	Streptococcus_phage	30.1	6.8e-35
AXP39493.1|754226_755117_+	hypothetical protein	NA	D0UIK6	Aggregatibacter_phage	56.2	1.8e-83
AXP39494.1|755532_756051_+	hypothetical protein	NA	G0ZNF0	Cronobacter_phage	49.2	1.3e-30
AXP39495.1|756094_756745_+|tail	phage minor tail protein L	tail	J9Q7Y5	Salmonella_phage	41.0	3.4e-39
AXP39496.1|757391_758111_+|tail	tail assembly protein	tail	G8C7R3	Escherichia_phage	40.7	1.4e-33
AXP39497.1|758114_761765_+|tail	phage tail protein	tail	A0A0R6PIC9	Moraxella_phage	37.1	1.6e-138
AXP40646.1|761961_763584_+|tail	tail fiber protein	tail	Q94MY0	Haemophilus_virus	63.7	3.5e-210
AXP39498.1|763595_764198_+	hypothetical protein	NA	Q94MX9	Haemophilus_virus	93.0	1.6e-96
AXP39499.1|764194_764653_+	enoyl-CoA hydratase	NA	F6MIM0	Haemophilus_phage	56.4	9.9e-46
AXP39500.1|765301_766027_+|tRNA	tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ	tRNA	NA	NA	NA	NA
AXP39501.1|766079_766532_+	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
AXP39502.1|766598_767813_+	IscS subfamily cysteine desulfurase	NA	H7BUW1	unidentified_phage	35.1	2.0e-32
AXP39503.1|767836_768253_+	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	80.6	2.0e-53
AXP39504.1|768310_768634_+	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	46.7	5.7e-24
AXP39505.1|768646_769171_+	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
AXP39506.1|769221_769908_+	DUF2625 domain-containing protein	NA	NA	NA	NA	NA
AXP39507.1|769926_771786_+	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.3	2.3e-109
AXP39508.1|771825_772167_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
AXP39509.1|772166_772361_+	Fe-S assembly protein IscX	NA	NA	NA	NA	NA
AXP39510.1|772411_773026_-	hypothetical protein	NA	NA	NA	NA	NA
AXP39511.1|773043_774315_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
AXP39512.1|774324_775431_-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin)	NA	NA	NA	NA	NA
AXP39513.1|775439_776351_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AXP39514.1|776422_776962_-	type IV pilus biogenesis/stability protein PilW	NA	NA	NA	NA	NA
AXP39515.1|777061_778234_-|tRNA	bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN	tRNA	NA	NA	NA	NA
AXP39516.1|778459_779338_+	D-alanyl-D-alanine carboxypeptidase	NA	NA	NA	NA	NA
AXP39517.1|779703_780585_+	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXP39518.1|780584_781505_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	27.3	2.9e-12
AXP39519.1|781508_782357_+	iron transport system membrane protein	NA	NA	NA	NA	NA
AXP39520.1|782349_783165_+	metal ABC transporter permease	NA	NA	NA	NA	NA
AXP39521.1|783264_783912_-	thiaminase II	NA	NA	NA	NA	NA
AXP39522.1|783921_784866_-	thiamine biosynthesis protein	NA	NA	NA	NA	NA
AXP39523.1|784887_785625_-	ABC transporter permease	NA	NA	NA	NA	NA
AXP39524.1|785621_786344_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.5	1.5e-27
AXP39525.1|786728_787697_+	CMP-Neu5Ac--lipooligosaccharide alpha 2-3 sialyltransferase	NA	NA	NA	NA	NA
AXP39526.1|787869_788886_+	UDP-glucose 4-epimerase GalE	NA	A0A2K9L1R4	Tupanvirus	48.9	1.2e-88
AXP39527.1|789027_790305_+	MFS transporter	NA	NA	NA	NA	NA
AXP39528.1|790389_791034_+	adenylate kinase	NA	A0A1B4XWI3	Tenacibaculum_phage	28.1	1.0e-11
AXP39529.1|791193_791796_-	cytochrome C	NA	NA	NA	NA	NA
AXP39530.1|791810_792263_-	nitrate reductase cytochrome c-type subunit	NA	NA	NA	NA	NA
AXP39531.1|792259_793123_-	ferredoxin-type protein NapH	NA	NA	NA	NA	NA
AXP39532.1|793122_793962_-	ferredoxin-type protein NapG	NA	NA	NA	NA	NA
AXP39533.1|794015_796499_-	periplasmic nitrate reductase subunit alpha	NA	NA	NA	NA	NA
AXP39534.1|796535_796817_-	chaperone NapD	NA	NA	NA	NA	NA
AXP39535.1|796809_797340_-	ferredoxin-type protein NapF	NA	NA	NA	NA	NA
AXP39536.1|797545_797890_-	DUF469 domain-containing protein	NA	NA	NA	NA	NA
AXP39537.1|797974_798715_-|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	tRNA	NA	NA	NA	NA
>prophage 4
CP031681	Haemophilus influenzae strain P669-6977 chromosome, complete genome	2013003	1345637	1435022	2013003	portal,plate,lysis,terminase,tail,tRNA,protease,capsid,head	Mannheimia_phage(41.94%)	83	NA	NA
AXP39991.1|1345637_1347608_+|tRNA	tRNA(Met) cytidine acetyltransferase	tRNA	NA	NA	NA	NA
AXP39992.1|1347879_1351320_+	transcription-repair coupling factor	NA	NA	NA	NA	NA
AXP39993.1|1351372_1352764_-|protease	DegQ family serine endoprotease	protease	A0A1B1IT49	uncultured_Mediterranean_phage	31.2	7.2e-23
AXP39994.1|1352957_1353848_+	acetyl-CoA carboxylase carboxyl transferase subunit beta	NA	NA	NA	NA	NA
AXP39995.1|1353840_1355154_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
AXP39996.1|1355441_1356122_-	vancomycin high temperature exclusion protein	NA	NA	NA	NA	NA
AXP39997.1|1356279_1357356_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
AXP39998.1|1357410_1360053_-	DNA topoisomerase (ATP-hydrolyzing) subunit A	NA	G3M9Z5	Bacillus_virus	32.3	2.1e-103
AXP39999.1|1360110_1360347_+	hypothetical protein	NA	NA	NA	NA	NA
AXP40000.1|1360652_1362416_-	30S ribosomal protein S12 methylthiotransferase accessory protein YcaO	NA	NA	NA	NA	NA
AXP40665.1|1362552_1362945_-	hypothetical protein	NA	NA	NA	NA	NA
AXP40001.1|1363264_1364071_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AXP40002.1|1364122_1364824_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
AXP40003.1|1364867_1365728_-	S-adenosyl-L-methionine-dependent methyltransferase TehB	NA	NA	NA	NA	NA
AXP40004.1|1365838_1367887_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0S905	Catovirus	24.7	9.3e-27
AXP40005.1|1368037_1369150_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
AXP40006.1|1369196_1369859_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
AXP40007.1|1369963_1370647_+	acylneuraminate cytidylyltransferase	NA	NA	NA	NA	NA
AXP40008.1|1371354_1372365_-|portal	phage portal protein	portal	Q19UT6	Mannheimia_phage	60.4	1.8e-116
AXP40009.1|1372374_1374150_-|terminase	terminase	terminase	A0A0M3LRV4	Mannheimia_phage	64.1	1.1e-217
AXP40010.1|1374314_1375130_+|capsid	capsid scaffolding protein	capsid	A0A0M3LNM2	Mannheimia_phage	60.5	6.9e-66
AXP40011.1|1375150_1376200_+|capsid	phage major capsid protein, P2 family	capsid	Q19UT3	Mannheimia_phage	51.6	4.4e-89
AXP40012.1|1376211_1376862_+|terminase	terminase	terminase	Q19US0	Mannheimia_phage	46.0	2.4e-45
AXP40013.1|1377155_1377662_+|head	phage head protein	head	A0A0M3LNL8	Mannheimia_phage	51.0	1.4e-32
AXP40014.1|1377661_1377871_+|tail	phage tail protein	tail	E5G6M9	Salmonella_phage	40.6	4.5e-06
AXP40015.1|1377872_1378094_+|lysis	lysis protein	lysis	NA	NA	NA	NA
AXP40016.1|1378086_1378605_+	lysozyme	NA	A0A0M3LPQ1	Mannheimia_phage	46.0	9.5e-37
AXP40017.1|1378589_1378940_+	chemotaxis protein	NA	NA	NA	NA	NA
AXP40018.1|1378854_1379118_+	hypothetical protein	NA	NA	NA	NA	NA
AXP40019.1|1379114_1379330_+	TraR/DksA family transcriptional regulator	NA	A0A0M3LS11	Mannheimia_phage	47.9	1.1e-10
AXP40020.1|1379554_1380025_+|tail	phage tail protein	tail	E5G6N3	Salmonella_phage	45.3	7.3e-28
AXP40021.1|1380024_1380486_+	phage virion morphogenesis protein	NA	Q19UR2	Mannheimia_phage	42.7	3.4e-22
AXP40022.1|1380486_1380834_-	hypothetical protein	NA	NA	NA	NA	NA
AXP40023.1|1380937_1381075_+	hypothetical protein	NA	NA	NA	NA	NA
AXP40024.1|1381129_1381441_-	hypothetical protein	NA	NA	NA	NA	NA
AXP40025.1|1381543_1381717_+	hypothetical protein	NA	Q19UR2	Mannheimia_phage	53.3	3.2e-05
AXP40026.1|1381694_1381967_-	hypothetical protein	NA	NA	NA	NA	NA
AXP40027.1|1382037_1384776_+|tail	phage tail tape measure protein	tail	V5YUN9	Pseudomonas_phage	35.7	7.2e-83
AXP40028.1|1384996_1385449_+	hypothetical protein	NA	NA	NA	NA	NA
AXP40029.1|1385546_1386104_+	hypothetical protein	NA	NA	NA	NA	NA
AXP40030.1|1386112_1386541_+	hypothetical protein	NA	NA	NA	NA	NA
AXP40031.1|1386644_1387244_+|plate	phage baseplate assembly protein V	plate	A0A0M3LPY9	Mannheimia_phage	66.0	4.2e-44
AXP40032.1|1387245_1387584_+|plate	baseplate assembly protein W	plate	Q19UQ6	Mannheimia_phage	56.6	3.4e-19
AXP40033.1|1387580_1388495_+|plate	baseplate assembly protein	plate	Q19UQ5	Mannheimia_phage	59.5	1.8e-94
AXP40034.1|1388484_1389021_+|tail	phage tail protein I	tail	M1T2R2	Escherichia_phage	53.7	5.4e-51
AXP40035.1|1389029_1391555_+|tail	phage tail protein	tail	Q94MY0	Haemophilus_virus	64.8	2.0e-241
AXP40036.1|1391566_1392169_+	hypothetical protein	NA	Q94MX9	Haemophilus_virus	91.0	3.4e-94
AXP40037.1|1392165_1392669_+	enoyl-CoA hydratase	NA	F6MIM0	Haemophilus_phage	63.6	1.7e-51
AXP40038.1|1392725_1393547_+	hypothetical protein	NA	NA	NA	NA	NA
AXP40039.1|1393560_1393929_+	hypothetical protein	NA	NA	NA	NA	NA
AXP40666.1|1393945_1395085_+	hypothetical protein	NA	NA	NA	NA	NA
AXP40040.1|1395094_1395622_+	hypothetical protein	NA	NA	NA	NA	NA
AXP40041.1|1395625_1396390_+	hypothetical protein	NA	NA	NA	NA	NA
AXP40042.1|1398051_1398507_+	ribosome maturation factor RimP	NA	NA	NA	NA	NA
AXP40043.1|1398523_1400011_+	transcription termination/antitermination protein NusA	NA	NA	NA	NA	NA
AXP40044.1|1400022_1402557_+	translation initiation factor IF-2	NA	A0A2H4UTS4	Bodo_saltans_virus	26.4	1.8e-27
AXP40667.1|1402635_1405803_-	type I restriction endonuclease subunit R	NA	A0A220A398	Liberibacter_phage	30.6	9.5e-79
AXP40045.1|1405804_1406851_-	hypothetical protein	NA	NA	NA	NA	NA
AXP40046.1|1406843_1408109_-	restriction endonuclease subunit S	NA	NA	NA	NA	NA
AXP40047.1|1408101_1409772_-	SAM-dependent DNA methyltransferase	NA	A0A2H4UVW8	Bodo_saltans_virus	22.0	2.7e-08
AXP40048.1|1409936_1410323_+	30S ribosome-binding factor RbfA	NA	NA	NA	NA	NA
AXP40049.1|1410322_1411243_+|tRNA	tRNA pseudouridine(55) synthase TruB	tRNA	NA	NA	NA	NA
AXP40050.1|1411323_1412457_+	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA	NA
AXP40051.1|1412489_1413329_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	38.9	6.1e-41
AXP40052.1|1413455_1414241_-	hypothetical protein	NA	NA	NA	NA	NA
AXP40053.1|1414231_1414612_-	hypothetical protein	NA	NA	NA	NA	NA
AXP40054.1|1414608_1415808_-	cysteine desulfurase	NA	Q2XUY6	environmental_halophage	31.6	2.2e-60
AXP40668.1|1415809_1416271_-	thermonuclease family protein	NA	NA	NA	NA	NA
AXP40055.1|1416406_1416829_+	hypothetical protein	NA	NA	NA	NA	NA
AXP40056.1|1416847_1417543_+|lysis	CidB/LrgB family autolysis modulator	lysis	NA	NA	NA	NA
AXP40057.1|1417635_1419021_+	deoxyguanosinetriphosphate triphosphohydrolase family protein	NA	NA	NA	NA	NA
AXP40058.1|1419114_1421058_+	ABC transporter ATP-binding protein	NA	A0A2K9L0W2	Tupanvirus	29.8	3.2e-53
AXP40059.1|1421138_1422221_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
AXP40060.1|1422351_1423122_-	spermidine/putrescine ABC transporter permease PotC	NA	NA	NA	NA	NA
AXP40061.1|1423121_1423982_-	spermidine/putrescine ABC transporter permease	NA	NA	NA	NA	NA
AXP40669.1|1423965_1425114_-	spermidine/putrescine ABC transporter ATP-binding protein PotA	NA	G3M9Y6	Bacillus_virus	38.3	8.3e-33
AXP40062.1|1425380_1426619_+	peptidase T	NA	NA	NA	NA	NA
AXP40063.1|1427190_1427673_-	DNA starvation/stationary phase protection protein	NA	NA	NA	NA	NA
AXP40064.1|1427946_1428825_+	cytidine deaminase	NA	NA	NA	NA	NA
AXP40065.1|1428867_1429833_-|tRNA	tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	tRNA	NA	NA	NA	NA
AXP40066.1|1429829_1431344_-	sodium/proline symporter PutP	NA	NA	NA	NA	NA
AXP40067.1|1431459_1432935_+	ribonuclease G	NA	NA	NA	NA	NA
AXP40068.1|1433354_1435022_+|tRNA	glutamine--tRNA ligase	tRNA	A0A222YZ70	Escherichia_phage	77.5	8.1e-255
>prophage 5
CP031681	Haemophilus influenzae strain P669-6977 chromosome, complete genome	2013003	1502051	1518331	2013003	terminase,holin,head	Haemophilus_phage(47.37%)	24	NA	NA
AXP40120.1|1502051_1502228_-	DUF2213 domain-containing protein	NA	Q7Y5U2	Haemophilus_phage	93.1	8.5e-22
AXP40121.1|1502368_1503679_-|head	phage head morphogenesis protein	head	Q7Y5U5	Haemophilus_phage	78.3	5.3e-108
AXP40122.1|1503578_1504913_-	DUF1073 domain-containing protein	NA	Q7Y5U6	Haemophilus_phage	84.2	2.1e-213
AXP40672.1|1504914_1506189_-|terminase	PBSX family phage terminase large subunit	terminase	A0A220NQL3	Acinetobacter_phage	55.0	7.9e-125
AXP40123.1|1506244_1506757_-|terminase	terminase small subunit	terminase	A0A1X9SFE5	Acinetobacter_phage	39.2	1.0e-19
AXP40124.1|1506801_1507080_+	XRE family transcriptional regulator	NA	A0A1S5NNJ5	Burkholderia_phage	66.2	6.5e-16
AXP40125.1|1507081_1507363_-	hypothetical protein	NA	Q776X1	Haemophilus_phage	73.3	9.4e-31
AXP40126.1|1507274_1507598_-	DUF2570 domain-containing protein	NA	Q7Y5U9	Haemophilus_phage	53.7	5.0e-20
AXP40127.1|1507590_1508193_-	glycoside hydrolase family 19 protein	NA	Q7Y5V0	Haemophilus_phage	53.4	3.7e-56
AXP40128.1|1508161_1508518_-|holin	phage holin, lambda family	holin	NA	NA	NA	NA
AXP40129.1|1508854_1509523_-	hypothetical protein	NA	D0UIM5	Aggregatibacter_phage	62.3	6.7e-67
AXP40130.1|1509880_1510846_+	hypothetical protein	NA	Q8HA04	Enterobacteria_phage	58.8	1.2e-88
AXP40131.1|1510895_1511267_-	hypothetical protein	NA	NA	NA	NA	NA
AXP40132.1|1511297_1511963_-	HNH endonuclease	NA	A0A2I7QND8	Vibrio_phage	42.8	2.2e-38
AXP40133.1|1512603_1513020_-	recombination protein NinB	NA	Q7Y5V7	Haemophilus_phage	84.7	1.1e-62
AXP40134.1|1513056_1513281_-	hypothetical protein	NA	A0A0M3LR43	Mannheimia_phage	47.9	1.1e-10
AXP40135.1|1513277_1513913_-	replication P	NA	NA	NA	NA	NA
AXP40136.1|1513897_1514656_-	helix-turn-helix domain-containing protein	NA	D0UIL5	Aggregatibacter_phage	68.3	2.4e-60
AXP40137.1|1514652_1515327_-	hypothetical protein	NA	D0UIL6	Aggregatibacter_phage	67.9	6.9e-80
AXP40138.1|1515375_1515816_-	hypothetical protein	NA	NA	NA	NA	NA
AXP40139.1|1515864_1516053_-	DNA-binding protein	NA	Q7Y5W4	Haemophilus_phage	93.5	6.5e-28
AXP40140.1|1516163_1516862_+	XRE family transcriptional regulator	NA	Q7Y5W5	Haemophilus_phage	84.5	1.4e-112
AXP40141.1|1516913_1517993_+	hypothetical protein	NA	NA	NA	NA	NA
AXP40142.1|1517995_1518331_+	DUF4325 domain-containing protein	NA	A0A2H4J4X6	uncultured_Caudovirales_phage	41.5	8.1e-13
>prophage 6
CP031681	Haemophilus influenzae strain P669-6977 chromosome, complete genome	2013003	1559478	1651288	2013003	transposase,terminase,holin,tail,tRNA,protease,plate,head	Burkholderia_virus(14.29%)	105	NA	NA
AXP40189.1|1559478_1561386_-|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	42.3	1.1e-114
AXP40190.1|1561476_1562106_-	23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE	NA	NA	NA	NA	NA
AXP40191.1|1562232_1562532_+	ribosome assembly RNA-binding protein YhbY	NA	NA	NA	NA	NA
AXP40192.1|1562570_1563047_-	transcription elongation factor GreA	NA	NA	NA	NA	NA
AXP40193.1|1563210_1564650_+	serine-type D-Ala-D-Ala carboxypeptidase	NA	NA	NA	NA	NA
AXP40194.1|1565422_1565692_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
AXP40195.1|1565827_1565965_-	hypothetical protein	NA	NA	NA	NA	NA
AXP40196.1|1565961_1566690_-	hypothetical protein	NA	NA	NA	NA	NA
AXP40197.1|1566923_1567457_-	beta-hydroxydecanoyl-ACP dehydratase	NA	NA	NA	NA	NA
AXP40198.1|1567625_1569431_-|protease	Lon protease family protein	protease	NA	NA	NA	NA
AXP40199.1|1569527_1569974_+	macrodomain Ter protein	NA	NA	NA	NA	NA
AXP40200.1|1570042_1571965_-	exodeoxyribonuclease V subunit alpha	NA	A0A1P8DII4	Virus_Rctr197k	25.3	9.7e-18
AXP40201.1|1571964_1575600_-	exodeoxyribonuclease V subunit beta	NA	NA	NA	NA	NA
AXP40202.1|1575712_1576066_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
AXP40676.1|1576131_1576329_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
AXP40203.1|1576539_1577082_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	33.9	1.4e-14
AXP40204.1|1577214_1578027_-	D-hexose-6-phosphate mutarotase	NA	NA	NA	NA	NA
AXP40205.1|1578108_1578546_-	DUF4976 domain-containing protein	NA	NA	NA	NA	NA
AXP40206.1|1578565_1580617_-	AAA family ATPase	NA	M1PXF0	Moumouvirus	37.9	3.2e-11
AXP40207.1|1581745_1582507_-	protein phosphatase	NA	NA	NA	NA	NA
AXP40208.1|1582506_1583352_-	NAD-dependent deacetylase	NA	NA	NA	NA	NA
AXP40209.1|1583348_1583549_-	cell division protein FtsK	NA	NA	NA	NA	NA
AXP40210.1|1583767_1584766_+	hypothetical protein	NA	NA	NA	NA	NA
AXP40211.1|1584814_1585525_-	NAD-dependent deacylase	NA	A0A1C3S788	Escherichia_phage	27.8	7.4e-16
AXP40212.1|1585508_1585964_-	hypothetical protein	NA	I6X231	Vibriophage	63.0	2.1e-43
AXP40213.1|1586022_1586976_-	WYL domain-containing transcriptional regulator	NA	NA	NA	NA	NA
AXP40214.1|1587041_1587527_-	endopeptidase	NA	NA	NA	NA	NA
AXP40215.1|1587579_1587870_-	integration host factor subunit alpha	NA	Q2A099	Sodalis_phage	38.2	1.9e-10
AXP40216.1|1587871_1590259_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AXP40217.1|1590292_1591282_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.0	5.5e-33
AXP40218.1|1591430_1592171_-	hypothetical protein	NA	NA	NA	NA	NA
AXP40219.1|1592216_1592465_+	2Fe-2S ferredoxin-like protein	NA	G9IAA2	Pseudomonas_phage	50.6	3.5e-13
AXP40220.1|1592459_1593272_-	4-hydroxy-tetrahydrodipicolinate reductase	NA	NA	NA	NA	NA
AXP40221.1|1593288_1593921_-	hypothetical protein	NA	NA	NA	NA	NA
AXP40222.1|1593917_1594409_-	phosphatidylglycerophosphatase A	NA	NA	NA	NA	NA
AXP40223.1|1594405_1595392_-	thiamine-phosphate kinase	NA	NA	NA	NA	NA
AXP40224.1|1595456_1595891_-	transcription antitermination factor NusB	NA	NA	NA	NA	NA
AXP40225.1|1595894_1596368_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	45.4	3.9e-29
AXP40226.1|1596594_1597998_+|tRNA	asparagine--tRNA ligase	tRNA	A0A1V0SDB6	Indivirus	38.6	2.2e-83
AXP40227.1|1598073_1598763_+	carbonic anhydrase	NA	NA	NA	NA	NA
AXP40228.1|1599153_1599417_+	hypothetical protein	NA	F6MIM3	Haemophilus_phage	76.7	6.1e-32
AXP40229.1|1599456_1600302_-	hypothetical protein	NA	F6MIM2	Haemophilus_phage	71.7	1.6e-118
AXP40230.1|1600358_1600478_-	Com family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
AXP40231.1|1600653_1601154_-	enoyl-CoA hydratase	NA	F6MIM0	Haemophilus_phage	63.5	9.1e-53
AXP40232.1|1601150_1601753_-	hypothetical protein	NA	Q94MX9	Haemophilus_virus	91.0	2.6e-94
AXP40233.1|1601764_1603474_-|tail	phage tail protein	tail	Q94MY0	Haemophilus_virus	66.7	8.0e-157
AXP40234.1|1603505_1604075_-|tail	phage tail protein	tail	A4JWL7	Burkholderia_virus	45.3	4.5e-40
AXP40235.1|1604067_1605174_-|plate	baseplate J/gp47 family protein	plate	A4JWL6	Burkholderia_virus	36.2	2.3e-56
AXP40236.1|1605173_1605539_-|plate	phage baseplate protein	plate	NA	NA	NA	NA
AXP40237.1|1605593_1606202_-|plate	phage baseplate assembly protein V	plate	A0A291LA20	Bordetella_phage	42.1	2.2e-08
AXP40238.1|1606188_1607253_-	hypothetical protein	NA	NA	NA	NA	NA
AXP40239.1|1607245_1607476_-	hypothetical protein	NA	Q6QIA3	Burkholderia_phage	47.8	7.2e-13
AXP40240.1|1607456_1608389_-	hypothetical protein	NA	NA	NA	NA	NA
AXP40241.1|1608388_1610737_-|tail	phage tail tape measure protein	tail	K4ICR4	Acidithiobacillus_phage	40.3	3.7e-72
AXP40242.1|1610774_1611008_+	hypothetical protein	NA	NA	NA	NA	NA
AXP40243.1|1611023_1611164_-|tail	GpE family phage tail protein	tail	NA	NA	NA	NA
AXP40244.1|1611184_1611460_-|tail	phage tail assembly protein	tail	NA	NA	NA	NA
AXP40245.1|1611553_1612072_-|tail	phage major tail tube protein	tail	A4JWK6	Burkholderia_virus	45.0	1.5e-37
AXP40246.1|1612082_1613468_-|tail	phage tail protein	tail	A4JWK5	Burkholderia_virus	44.3	4.0e-98
AXP40247.1|1613477_1613975_-	hypothetical protein	NA	NA	NA	NA	NA
AXP40248.1|1613986_1614421_-	DUF1320 domain-containing protein	NA	A4JWK2	Burkholderia_virus	36.4	4.4e-19
AXP40249.1|1614420_1614792_-	hypothetical protein	NA	NA	NA	NA	NA
AXP40250.1|1614857_1615769_-	hypothetical protein	NA	A4JWK0	Burkholderia_virus	47.3	1.2e-71
AXP40251.1|1615798_1616902_-	peptidase	NA	A4JWJ9	Burkholderia_virus	39.5	5.5e-66
AXP40252.1|1617144_1617645_-	phage virion morphogenesis protein	NA	G8GWE3	Rhodobacter_phage	31.5	3.8e-14
AXP40253.1|1617847_1618036_-	hypothetical protein	NA	NA	NA	NA	NA
AXP40254.1|1618222_1619500_-|head	phage head morphogenesis protein	head	J9STS2	Pseudomonas_phage	48.1	3.3e-54
AXP40255.1|1619500_1620916_-	DUF935 family protein	NA	Q6QIC0	Burkholderia_phage	45.2	5.0e-112
AXP40256.1|1620917_1622240_-|terminase	terminase	terminase	A0A2P9JZI8	Alteromonadaceae_phage	64.2	1.8e-148
AXP40257.1|1622223_1622772_-	DUF3486 family protein	NA	Q6QIC2	Burkholderia_phage	40.3	5.9e-29
AXP40258.1|1622781_1623084_-	hypothetical protein	NA	A0A0S4L0A3	Pseudomonas_phage	52.0	3.1e-24
AXP40259.1|1623080_1623389_-	hypothetical protein	NA	Q6QIC4	Burkholderia_phage	39.4	6.3e-12
AXP40260.1|1623512_1623770_-	DUF2681 domain-containing protein	NA	NA	NA	NA	NA
AXP40261.1|1623766_1623997_-	DUF2644 domain-containing protein	NA	F6MIK0	Haemophilus_phage	70.7	3.3e-18
AXP40262.1|1624236_1624773_-	N-acetylmuramoyl-L-alanine amidase	NA	F6MIJ9	Haemophilus_phage	68.0	7.2e-72
AXP40263.1|1624859_1625279_-	hypothetical protein	NA	NA	NA	NA	NA
AXP40677.1|1625352_1625727_-	transcriptional regulator	NA	Q6QIE8	Burkholderia_phage	46.2	1.9e-23
AXP40264.1|1625730_1626219_-	regulatory protein GemA	NA	A0A0C4UQU3	Shigella_phage	31.7	4.8e-14
AXP40265.1|1626327_1627296_-	hypothetical protein	NA	NA	NA	NA	NA
AXP40266.1|1627377_1627578_-	hypothetical protein	NA	NA	NA	NA	NA
AXP40267.1|1627749_1627947_-	ANR family transcriptional regulator	NA	NA	NA	NA	NA
AXP40268.1|1628051_1628570_-	host-nuclease inhibitor protein Gam	NA	F6MIJ0	Haemophilus_phage	55.2	1.0e-43
AXP40269.1|1628591_1628795_-	hypothetical protein	NA	NA	NA	NA	NA
AXP40270.1|1628794_1629712_-	helix-turn-helix domain-containing protein	NA	A0A2I7S9C3	Vibrio_phage	39.6	2.5e-56
AXP40271.1|1629738_1631748_-|transposase	transposase	transposase	M4M9R2	Vibrio_phage	35.7	1.8e-99
AXP40272.1|1631758_1631986_-	transcriptional regulator	NA	A0A0M3LPY8	Mannheimia_phage	69.0	2.1e-20
AXP40273.1|1632196_1632697_+	ci repressor-like protein	NA	A0A0M3LP76	Mannheimia_phage	53.6	1.9e-10
AXP40274.1|1633009_1633588_-	ABC transporter ATP-binding protein	NA	A0A2I4R674	Erysipelothrix_phage	41.8	5.7e-06
AXP40275.1|1633560_1633965_-	ABC transporter	NA	NA	NA	NA	NA
AXP40276.1|1633844_1634081_-	ATP-binding cassette domain-containing protein	NA	NA	NA	NA	NA
AXP40277.1|1634075_1634432_+	hypothetical protein	NA	NA	NA	NA	NA
AXP40278.1|1634903_1635122_+	hypothetical protein	NA	NA	NA	NA	NA
AXP40279.1|1635102_1636533_-	bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase	NA	A0A1B1IUK5	uncultured_Mediterranean_phage	27.9	1.4e-32
AXP40280.1|1636629_1637565_+	LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferase	NA	A0A1W6JP29	Morganella_phage	39.9	1.5e-53
AXP40281.1|1637638_1639537_+	DNA topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	36.4	2.5e-98
AXP40282.1|1639603_1641847_+	DNA topoisomerase IV subunit A	NA	G3M9Z5	Bacillus_virus	36.0	1.1e-86
AXP40283.1|1641888_1643103_+	sodium/glutamate symport carrier protein	NA	NA	NA	NA	NA
AXP40284.1|1643141_1644050_-	RimK family alpha-L-glutamate ligase	NA	NA	NA	NA	NA
AXP40285.1|1644164_1644428_+	glutaredoxin	NA	A0A2I7SAE2	Vibrio_phage	71.4	3.2e-25
AXP40286.1|1644494_1645715_-	3-oxoacyl-ACP synthase I	NA	NA	NA	NA	NA
AXP40287.1|1645863_1647876_+|tRNA	bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC	tRNA	NA	NA	NA	NA
AXP40678.1|1648111_1648915_+	protein LicA	NA	NA	NA	NA	NA
AXP40288.1|1648914_1649793_+	DMT family transporter	NA	NA	NA	NA	NA
AXP40289.1|1649789_1650491_+|holin	CTP--phosphocholine cytidylyltransferase	holin	NA	NA	NA	NA
AXP40290.1|1650490_1651288_+|holin	phosphorylcholine transferase LicD	holin	A0A1V0SD50	Indivirus	46.7	1.0e-05
>prophage 7
CP031681	Haemophilus influenzae strain P669-6977 chromosome, complete genome	2013003	1674476	1721340	2013003	terminase,portal,tail,protease	Mannheimia_phage(13.51%)	62	NA	NA
AXP40316.1|1674476_1675193_-	hypothetical protein	NA	A0A0M3LSH7	Mannheimia_phage	58.2	8.2e-71
AXP40317.1|1675204_1675438_-	DUF935 family protein	NA	B7SDN1	Haemophilus_phage	64.9	1.6e-20
AXP40318.1|1677473_1677932_-	enoyl-CoA hydratase	NA	F6MIM0	Haemophilus_phage	56.4	9.9e-46
AXP40319.1|1677928_1678531_-	hypothetical protein	NA	Q94MX9	Haemophilus_virus	93.0	1.6e-96
AXP40679.1|1678542_1680165_-|tail	tail fiber protein	tail	Q94MY0	Haemophilus_virus	63.7	3.5e-210
AXP40320.1|1680361_1684012_-|tail	phage tail protein	tail	A0A0R6PIC9	Moraxella_phage	37.1	1.6e-138
AXP40321.1|1684015_1684735_-|tail	tail assembly protein	tail	G8C7R3	Escherichia_phage	40.7	1.4e-33
AXP40322.1|1684673_1685381_-	hypothetical protein	NA	Q3HQU3	Burkholderia_phage	44.3	1.6e-50
AXP40323.1|1685382_1686033_-|tail	phage minor tail protein L	tail	J9Q7Y5	Salmonella_phage	40.2	4.1e-37
AXP40324.1|1686752_1687286_-	DUF4236 domain-containing protein	NA	NA	NA	NA	NA
AXP40325.1|1687347_1687692_-|tail	phage tail protein	tail	Q687F2	Enterobacteria_phage	34.9	1.2e-14
AXP40326.1|1687692_1690071_-	hypothetical protein	NA	A0A088FB58	Idiomarinaceae_phage	23.9	9.2e-18
AXP40327.1|1690012_1690318_-|tail	phage tail protein	tail	NA	NA	NA	NA
AXP40328.1|1690380_1690764_-|tail	phage tail protein	tail	NA	NA	NA	NA
AXP40329.1|1690769_1691270_-|tail	phage tail protein	tail	O64327	Escherichia_phage	56.1	7.5e-39
AXP40330.1|1691262_1691667_-|tail	phage tail protein	tail	K7PHM6	Enterobacterial_phage	32.1	7.5e-13
AXP40331.1|1691663_1692209_-|tail	phage tail protein	tail	K7PMB7	Enterobacterial_phage	40.6	1.9e-27
AXP40332.1|1692208_1692514_-	hypothetical protein	NA	NA	NA	NA	NA
AXP40333.1|1692494_1692818_-	DUF2190 family protein	NA	NA	NA	NA	NA
AXP40334.1|1692896_1694891_-|protease	Clp protease ClpP	protease	A0A1W6JT88	Pseudomonas_phage	54.6	5.4e-197
AXP40335.1|1694862_1696386_-|portal	phage portal protein	portal	K7PJP3	Enterobacteria_phage	57.8	4.6e-156
AXP40336.1|1696389_1696608_-	hypothetical protein	NA	NA	NA	NA	NA
AXP40337.1|1696604_1698728_-|terminase	phage terminase large subunit family protein	terminase	K7PH52	Enterobacterial_phage	67.3	1.3e-273
AXP40338.1|1698730_1699225_-	DUF1441 family protein	NA	K7PJY2	Enterobacterial_phage	54.2	1.0e-40
AXP40339.1|1699495_1699777_-	hypothetical protein	NA	Q776X1	Haemophilus_phage	70.0	1.5e-28
AXP40340.1|1699688_1700024_-	DUF2570 domain-containing protein	NA	Q7Y5U9	Haemophilus_phage	49.0	9.2e-17
AXP40341.1|1699996_1700539_-	lysozyme	NA	A0A0M3LPQ1	Mannheimia_phage	52.0	3.1e-46
AXP40342.1|1700519_1700771_-	hypothetical protein	NA	NA	NA	NA	NA
AXP40343.1|1701072_1701843_-	XRE family transcriptional regulator	NA	Q76H56	Enterobacteria_phage	26.3	1.1e-15
AXP40344.1|1701968_1702175_+	transcriptional regulator	NA	NA	NA	NA	NA
AXP40345.1|1702218_1702671_+	hypothetical protein	NA	NA	NA	NA	NA
AXP40346.1|1702717_1703392_+	hypothetical protein	NA	D0UIL6	Aggregatibacter_phage	55.1	1.5e-61
AXP40347.1|1703388_1704147_+	helix-turn-helix domain-containing protein	NA	D0UIL5	Aggregatibacter_phage	69.3	1.6e-61
AXP40348.1|1704131_1704773_+	replication P	NA	NA	NA	NA	NA
AXP40349.1|1704769_1704994_+	hypothetical protein	NA	A0A0M3LR43	Mannheimia_phage	47.9	1.1e-10
AXP40350.1|1705030_1705447_+	recombination protein NinB	NA	Q7Y5V7	Haemophilus_phage	75.2	7.3e-56
AXP40351.1|1705539_1706127_+	recombinase NinG	NA	A0A2I7RAC0	Vibrio_phage	48.5	8.3e-37
AXP40352.1|1706128_1706494_+	RNA polymerase subunit sigma-70	NA	NA	NA	NA	NA
AXP40353.1|1706533_1707052_+	hypothetical protein	NA	NA	NA	NA	NA
AXP40354.1|1707286_1708108_+	NYN domain-containing protein	NA	A0A0R6PGY5	Moraxella_phage	40.9	3.1e-34
AXP40355.1|1708258_1708444_+	hypothetical protein	NA	NA	NA	NA	NA
AXP40356.1|1708829_1709141_+	hypothetical protein	NA	NA	NA	NA	NA
AXP40357.1|1709277_1709499_+	hypothetical protein	NA	NA	NA	NA	NA
AXP40358.1|1709642_1709936_+	hypothetical protein	NA	NA	NA	NA	NA
AXP40359.1|1709913_1710117_-	hypothetical protein	NA	NA	NA	NA	NA
AXP40360.1|1710348_1711086_+	site-specific DNA-methyltransferase	NA	A0A0E3U2R2	Fusobacterium_phage	77.5	5.2e-113
AXP40361.1|1711099_1711444_+	hypothetical protein	NA	NA	NA	NA	NA
AXP40362.1|1711440_1711734_+	hypothetical protein	NA	NA	NA	NA	NA
AXP40363.1|1712668_1713319_+	translocation protein TolB precursor	NA	A0A0M3LP90	Mannheimia_phage	70.6	5.8e-84
AXP40364.1|1713318_1713753_+	single-stranded DNA-binding protein	NA	A0A059WRL7	Vibrio_phage	36.2	7.5e-19
AXP40365.1|1713814_1714675_+	hypothetical protein	NA	A0A0U3TGV3	Pseudomonas_phage	68.0	1.7e-35
AXP40366.1|1714799_1715696_+	recombination-associated protein RdgC	NA	S4TWL4	Salmonella_phage	43.7	8.4e-57
AXP40367.1|1715692_1715938_+	hypothetical protein	NA	NA	NA	NA	NA
AXP40368.1|1715934_1716294_+	hypothetical protein	NA	NA	NA	NA	NA
AXP40369.1|1716301_1717465_+	DNA (cytosine-5-)-methyltransferase	NA	A0A2I7RFJ9	Vibrio_phage	46.4	7.5e-90
AXP40370.1|1717515_1718169_+	hypothetical protein	NA	A0A0M3LNU4	Mannheimia_phage	35.1	1.9e-05
AXP40371.1|1718172_1718589_+	hypothetical protein	NA	E5E463	Acinetobacter_phage	65.2	1.3e-07
AXP40680.1|1718705_1719194_+	hypothetical protein	NA	NA	NA	NA	NA
AXP40372.1|1719183_1719507_+	hypothetical protein	NA	NA	NA	NA	NA
AXP40373.1|1719499_1719844_+	DUF551 domain-containing protein	NA	NA	NA	NA	NA
AXP40374.1|1719895_1720096_+	AlpA family phage regulatory protein	NA	NA	NA	NA	NA
AXP40375.1|1720092_1721340_-	DUF4102 domain-containing protein	NA	A0A1V0E8G8	Vibrio_phage	37.2	6.2e-74
>prophage 8
CP031681	Haemophilus influenzae strain P669-6977 chromosome, complete genome	2013003	1835579	1844089	2013003		Bacillus_virus(33.33%)	9	NA	NA
AXP40472.1|1835579_1836263_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	50.7	2.3e-54
AXP40473.1|1836255_1836681_+	6-carboxytetrahydropterin synthase QueD	NA	A0A1U9WRB3	Streptococcus_virus	42.0	2.3e-20
AXP40474.1|1836681_1837317_+	7-carboxy-7-deazaguanine synthase	NA	A0A218M2Y8	Acidovorax_phage	35.2	2.9e-11
AXP40686.1|1837706_1837940_+	branched-chain amino acid aminotransferase	NA	NA	NA	NA	NA
AXP40475.1|1837923_1840107_+	DNA helicase II	NA	A7KV33	Bacillus_phage	37.6	6.7e-116
AXP40476.1|1840227_1841199_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
AXP40477.1|1841213_1842101_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
AXP40478.1|1842110_1843103_+	dipeptide ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	29.5	7.5e-14
AXP40479.1|1843105_1844089_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	26.8	7.1e-17
