The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP031685	Haemophilus influenzae strain P650-8603 chromosome, complete genome	1833710	1224744	1303725	1833710	protease,tail,terminase,capsid,plate,lysis,tRNA,portal,head	Mannheimia_phage(45.0%)	82	NA	NA
AXP41764.1|1224744_1226589_+|tRNA	tRNA(Met) cytidine acetyltransferase	tRNA	NA	NA	NA	NA
AXP41765.1|1226860_1230301_+	transcription-repair coupling factor	NA	NA	NA	NA	NA
AXP41766.1|1230353_1231745_-|protease	DegQ family serine endoprotease	protease	A0A1B1IT49	uncultured_Mediterranean_phage	31.2	7.2e-23
AXP41767.1|1231938_1232829_+	acetyl-CoA carboxylase, carboxyltransferase subunit beta	NA	NA	NA	NA	NA
AXP41768.1|1232821_1234135_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
AXP41769.1|1234413_1235094_-	vancomycin high temperature exclusion protein	NA	NA	NA	NA	NA
AXP41770.1|1235251_1236328_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
AXP41771.1|1236382_1239025_-	DNA topoisomerase (ATP-hydrolyzing) subunit A	NA	G3M9Z5	Bacillus_virus	32.3	2.7e-103
AXP41772.1|1239082_1239319_+	hypothetical protein	NA	NA	NA	NA	NA
AXP41773.1|1239396_1239579_+	hypothetical protein	NA	NA	NA	NA	NA
AXP41774.1|1239607_1241371_-	30S ribosomal protein S12 methylthiotransferase accessory protein YcaO	NA	NA	NA	NA	NA
AXP41775.1|1241485_1241887_-	hypothetical protein	NA	NA	NA	NA	NA
AXP41776.1|1241835_1242096_+	hypothetical protein	NA	NA	NA	NA	NA
AXP41777.1|1242095_1242860_+	ABC transporter ATP-binding protein	NA	F2Y2R6	Organic_Lake_phycodnavirus	29.8	1.0e-15
AXP41778.1|1242856_1243663_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
AXP41779.1|1243714_1244416_+	hydroxyacylglutathione hydrolase	NA	A0A1X9I5D3	Streptococcus_phage	28.5	5.6e-08
AXP41780.1|1244466_1245327_-	SAM-dependent methyltransferase TehB	NA	NA	NA	NA	NA
AXP41781.1|1245439_1247488_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	29.3	1.9e-59
AXP41782.1|1247638_1248751_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
AXP41783.1|1248797_1249460_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
AXP41784.1|1249566_1250250_+	acylneuraminate cytidylyltransferase	NA	NA	NA	NA	NA
AXP41785.1|1251629_1252640_-|portal	phage portal protein	portal	Q19UT6	Mannheimia_phage	61.9	1.8e-119
AXP41786.1|1252649_1254419_-|terminase	terminase	terminase	A0A0M3LRV4	Mannheimia_phage	64.6	1.5e-219
AXP41787.1|1254487_1254916_+	CopG family transcriptional regulator	NA	A0A0D4DCG1	Acinetobacter_phage	39.0	3.8e-15
AXP41788.1|1255008_1255188_-	hypothetical protein	NA	NA	NA	NA	NA
AXP41789.1|1255181_1255814_+	phage repressor protein	NA	D0UIM5	Aggregatibacter_phage	38.6	4.1e-34
AXP41790.1|1255991_1256798_+|capsid	capsid scaffolding protein	capsid	A0A0M3LNM2	Mannheimia_phage	58.6	2.5e-60
AXP41791.1|1256819_1257869_+|capsid	phage major capsid protein, P2 family	capsid	Q19UT3	Mannheimia_phage	51.9	5.7e-89
AXP41792.1|1257880_1258531_+|terminase	terminase	terminase	Q19US0	Mannheimia_phage	46.0	5.3e-45
AXP41793.1|1258823_1259330_+|head	phage head protein	head	A0A0M3LNL8	Mannheimia_phage	51.0	1.3e-33
AXP41794.1|1259329_1259539_+|tail	phage tail protein	tail	NA	NA	NA	NA
AXP41795.1|1259540_1259762_+|lysis	lysis protein	lysis	NA	NA	NA	NA
AXP41796.1|1259754_1260273_+	lysozyme	NA	A0A0M3LPQ1	Mannheimia_phage	46.6	9.5e-37
AXP41797.1|1260522_1260786_+	hypothetical protein	NA	NA	NA	NA	NA
AXP41798.1|1260782_1260998_+	TraR/DksA family transcriptional regulator	NA	A0A0M3LS11	Mannheimia_phage	47.9	1.1e-10
AXP41799.1|1260994_1261465_+|tail	phage tail protein	tail	E5G6N3	Salmonella_phage	44.6	2.8e-27
AXP41800.1|1261464_1261923_+	phage virion morphogenesis protein	NA	A0A2H4J927	uncultured_Caudovirales_phage	51.8	1.2e-27
AXP41801.1|1261900_1262161_-	hypothetical protein	NA	NA	NA	NA	NA
AXP41802.1|1262229_1265004_+|tail	phage tail tape measure protein	tail	E5G6Q1	Salmonella_phage	31.3	3.9e-84
AXP41803.1|1265225_1265678_+	hypothetical protein	NA	NA	NA	NA	NA
AXP41804.1|1265775_1266333_+	hypothetical protein	NA	NA	NA	NA	NA
AXP41805.1|1266341_1266770_+	hypothetical protein	NA	NA	NA	NA	NA
AXP41806.1|1266873_1267473_+|plate	phage baseplate assembly protein V	plate	A0A0M3LPY9	Mannheimia_phage	65.5	1.6e-43
AXP41807.1|1267474_1267813_+|plate	baseplate assembly protein W	plate	Q19UQ6	Mannheimia_phage	56.6	4.5e-19
AXP41808.1|1267809_1268724_+|plate	baseplate assembly protein	plate	Q19UQ5	Mannheimia_phage	59.2	6.7e-94
AXP41809.1|1268710_1269250_+|tail	phage tail protein I	tail	M1T2R2	Escherichia_phage	52.9	1.3e-49
AXP41810.1|1269258_1271754_+|tail	phage tail protein	tail	Q94MY0	Haemophilus_virus	73.6	1.1e-279
AXP41811.1|1271765_1272398_+	hypothetical protein	NA	Q94MX9	Haemophilus_virus	77.6	5.0e-80
AXP41812.1|1272394_1272886_+	enoyl-CoA hydratase	NA	F6MIM0	Haemophilus_phage	62.9	1.5e-52
AXP41813.1|1273043_1274228_+|tail	phage tail protein	tail	A0A1S6KZY7	Salmonella_phage	48.7	3.5e-103
AXP41814.1|1274231_1274738_+|tail	phage major tail tube protein	tail	Q19UP8	Mannheimia_phage	59.5	5.4e-53
AXP41815.1|1274803_1275103_+|tail	phage tail assembly protein	tail	A4PE51	Ralstonia_virus	45.4	1.5e-13
AXP41816.1|1275102_1275249_+|tail	GpE family phage tail protein	tail	R9QCM4	Mannheimia_phage	57.4	2.9e-07
AXP41817.1|1275416_1275854_+	oxidoreductase	NA	A0A0M3LQ18	Mannheimia_phage	56.0	1.0e-39
AXP41818.1|1275853_1277047_+	phage late control D family protein	NA	R9QBT3	Mannheimia_phage	52.0	1.6e-103
AXP41819.1|1277086_1277614_-	hypothetical protein	NA	NA	NA	NA	NA
AXP41820.1|1277603_1277996_-	DUF4325 domain-containing protein	NA	NA	NA	NA	NA
AXP41821.1|1277977_1278970_-	hypothetical protein	NA	NA	NA	NA	NA
AXP41822.1|1279023_1279209_-	hypothetical protein	NA	NA	NA	NA	NA
AXP41823.1|1279219_1280392_-	hypothetical protein	NA	NA	NA	NA	NA
AXP41824.1|1280405_1281101_-	helix-turn-helix transcriptional regulator	NA	A0A0M3LPF9	Mannheimia_phage	38.8	2.0e-34
AXP41825.1|1281220_1281445_+	transcriptional regulator	NA	Q76H55	Enterobacteria_phage	55.9	7.0e-13
AXP41826.1|1281499_1281742_-	hypothetical protein	NA	NA	NA	NA	NA
AXP41827.1|1281779_1282076_-	hypothetical protein	NA	NA	NA	NA	NA
AXP41828.1|1282528_1282870_+	hypothetical protein	NA	NA	NA	NA	NA
AXP41829.1|1282932_1283175_+	hypothetical protein	NA	Q19UN6	Mannheimia_phage	68.1	1.2e-21
AXP41830.1|1283265_1283529_+	hypothetical protein	NA	NA	NA	NA	NA
AXP41831.1|1283952_1284195_+	hypothetical protein	NA	NA	NA	NA	NA
AXP41832.1|1284320_1284629_+	hypothetical protein	NA	NA	NA	NA	NA
AXP41833.1|1284638_1286825_+	replication endonuclease	NA	Q94N00	Haemophilus_virus	42.8	2.2e-167
AXP41834.1|1286880_1287390_+	hypothetical protein	NA	A0A0M3LTD8	Mannheimia_phage	42.6	4.8e-25
AXP41835.1|1287389_1287557_+	DNA-binding protein	NA	NA	NA	NA	NA
AXP41836.1|1287537_1288830_-	DUF4102 domain-containing protein	NA	A0A1B5FPC6	Escherichia_phage	33.0	1.1e-44
AXP41837.1|1290115_1290571_+	ribosome maturation factor RimP	NA	NA	NA	NA	NA
AXP41838.1|1290587_1292075_+	transcription termination/antitermination protein NusA	NA	NA	NA	NA	NA
AXP41839.1|1292086_1294606_+	translation initiation factor IF-2	NA	A0A2H4UTS4	Bodo_saltans_virus	26.4	1.8e-27
AXP41840.1|1294684_1297852_-	type I restriction endonuclease subunit R	NA	A0A220A398	Liberibacter_phage	27.3	8.0e-78
AXP42361.1|1298757_1299288_-	hypothetical protein	NA	NA	NA	NA	NA
AXP41841.1|1299289_1300594_-	restriction endonuclease subunit S	NA	NA	NA	NA	NA
AXP41842.1|1300586_1302254_-	SAM-dependent DNA methyltransferase	NA	A0A2H4PQP4	Staphylococcus_phage	30.5	2.4e-49
AXP41843.1|1302418_1302805_+	30S ribosome-binding factor RbfA	NA	NA	NA	NA	NA
AXP41844.1|1302804_1303725_+|tRNA	tRNA pseudouridine(55) synthase TruB	tRNA	NA	NA	NA	NA
>prophage 2
CP031685	Haemophilus influenzae strain P650-8603 chromosome, complete genome	1833710	1392228	1398421	1833710		Mannheimia_phage(57.14%)	13	NA	NA
AXP41911.1|1392228_1392411_+	hypothetical protein	NA	A0A0M3LQV3	Mannheimia_phage	45.5	1.2e-05
AXP41912.1|1392454_1392904_-	CopG family transcriptional regulator	NA	NA	NA	NA	NA
AXP41913.1|1392935_1393118_-	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA	NA
AXP41914.1|1393274_1393886_-	hypothetical protein	NA	D0UIL6	Aggregatibacter_phage	45.7	6.8e-42
AXP41915.1|1393933_1394230_-	hypothetical protein	NA	Q7Y5W3	Haemophilus_phage	68.4	5.8e-31
AXP41916.1|1394250_1394457_-	XRE family transcriptional regulator	NA	A0A0M3LSY2	Mannheimia_phage	67.7	1.9e-17
AXP41917.1|1394587_1395244_+	LexA family transcriptional regulator	NA	A0A0M3LSL8	Mannheimia_phage	58.9	5.5e-66
AXP41918.1|1395311_1396241_+	hypothetical protein	NA	NA	NA	NA	NA
AXP41919.1|1396242_1396722_+	hypothetical protein	NA	NA	NA	NA	NA
AXP41920.1|1397196_1397367_-	DUF1508 domain-containing protein	NA	NA	NA	NA	NA
AXP41921.1|1397381_1397603_+	hypothetical protein	NA	NA	NA	NA	NA
AXP41922.1|1397812_1398169_+	hypothetical protein	NA	A0A0M3LPU3	Mannheimia_phage	48.6	4.7e-11
AXP41923.1|1398154_1398421_-	hypothetical protein	NA	A0A0N9STP5	Staphylococcus_phage	49.2	5.6e-09
>prophage 3
CP031685	Haemophilus influenzae strain P650-8603 chromosome, complete genome	1833710	1646763	1655275	1833710		uncultured_Caudovirales_phage(16.67%)	9	NA	NA
AXP42159.1|1646763_1647447_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	50.7	5.1e-54
AXP42160.1|1647439_1647865_+	6-carboxytetrahydropterin synthase QueD	NA	A0A1U9WRB3	Streptococcus_virus	42.7	1.3e-20
AXP42161.1|1647865_1648501_+	7-carboxy-7-deazaguanine synthase	NA	S4TZT1	uncultured_phage	30.3	8.7e-16
AXP42162.1|1648893_1649127_+	branched-chain amino acid aminotransferase	NA	NA	NA	NA	NA
AXP42163.1|1649110_1651294_+	DNA helicase II	NA	A7KV33	Bacillus_phage	37.6	3.0e-116
AXP42164.1|1651413_1652385_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
AXP42165.1|1652399_1653287_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
AXP42166.1|1653296_1654289_+	dipeptide ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.8	1.5e-14
AXP42167.1|1654291_1655275_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.2	1.4e-20
>prophage 4
CP031685	Haemophilus influenzae strain P650-8603 chromosome, complete genome	1833710	1782587	1791656	1833710		Escherichia_phage(83.33%)	9	NA	NA
AXP42290.1|1782587_1784432_+	ABC transporter ATP-binding protein	NA	F2Y2R6	Organic_Lake_phycodnavirus	29.6	1.6e-22
AXP42291.1|1784557_1784836_-	copper chaperone	NA	NA	NA	NA	NA
AXP42374.1|1784844_1785162_-	hypothetical protein	NA	NA	NA	NA	NA
AXP42292.1|1785181_1786291_-	transglutaminase family protein	NA	NA	NA	NA	NA
AXP42293.1|1786543_1788964_+	twin-arginine translocation signal domain-containing protein	NA	A0A077SK27	Escherichia_phage	50.7	1.3e-224
AXP42294.1|1788974_1789592_+	dimethyl sulfoxide reductase subunit B	NA	A0A077SL61	Escherichia_phage	57.3	7.5e-73
AXP42295.1|1789593_1790433_+	dimethyl sulfoxide reductase subunit C	NA	A0A077SK59	Escherichia_phage	31.4	7.2e-18
AXP42296.1|1790544_1791156_+	Tat proofreading chaperone DmsD	NA	A0A077SLS7	Escherichia_phage	33.0	7.8e-22
AXP42297.1|1791155_1791656_+	ferredoxin-type protein NapF	NA	A0A077SLP0	Escherichia_phage	32.9	1.7e-14
