assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003410275.1_ASM341027v1	CP031609	Escherichia coli strain S10 chromosome, complete genome	1	129941-130073	1	PILER-CR	no		cas3,DEDDh,c2c9_V-U4,cas14j,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG	Orphan	ATCACCAATATTGAAAA	17	0	0	NA	NA	NA	2	2	Orphan	cas3,DEDDh,c2c9_V-U4,cas14j,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG	NA|150aa|up_9|CP031609.1_121182_121632_+,NA|73aa|down_7|CP031609.1_138010_138229_+	NA|150aa|up_9|CP031609.1_121182_121632_+	NA	NA|60aa|up_8|CP031609.1_121748_121928_-	COG5302, COG5302, Post-segregation antitoxin (ccd killing mechanism protein) encoded by the F plasmid [General function prediction only]	NA|160aa|up_7|CP031609.1_121948_122428_-	PRK10769, folA, type 3 dihydrofolate reductase	NA|621aa|up_6|CP031609.1_122619_124482_-	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|177aa|up_5|CP031609.1_124474_125005_-	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|444aa|up_4|CP031609.1_125112_126444_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|up_3|CP031609.1_126502_126790_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_2|CP031609.1_126786_128073_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_1|CP031609.1_128123_129065_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_0|CP031609.1_129079_129850_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|down_0|CP031609.1_130322_131837_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|down_1|CP031609.1_131867_133010_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|down_2|CP031609.1_133127_134345_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|down_3|CP031609.1_134418_135972_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|down_4|CP031609.1_136080_136866_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|down_5|CP031609.1_136871_137462_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_6|CP031609.1_137580_137976_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|73aa|down_7|CP031609.1_138010_138229_+	NA	NA|1073aa|down_8|CP031609.1_138236_141455_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_9|CP031609.1_141472_142621_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit
GCA_003410275.1_ASM341027v1	CP031609	Escherichia coli strain S10 chromosome, complete genome	2	2049095-2049794	2,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3	cas3,DEDDh,c2c9_V-U4,cas14j,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG	Unclear	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	9,11,11	11	Unclear	cas3,DEDDh,c2c9_V-U4,cas14j,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG	NA,NA	NA|447aa|up_9|CP031609.1_2033392_2034733_+	TIGR03247, glucar-dehydr, glucarate dehydratase	NA|447aa|up_8|CP031609.1_2034753_2036094_+	TIGR03247, glucar-dehydr, glucarate dehydratase	NA|919aa|up_7|CP031609.1_2036324_2039081_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|434aa|up_6|CP031609.1_2039137_2040439_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_5|CP031609.1_2040486_2042721_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|264aa|up_4|CP031609.1_2042816_2043608_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_3|CP031609.1_2043835_2045473_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_2|CP031609.1_2045560_2046859_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_1|CP031609.1_2046918_2047791_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|224aa|up_0|CP031609.1_2048084_2048756_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|CP031609.1_2050432_2051911_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|CP031609.1_2051937_2053215_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|CP031609.1_2053533_2054319_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|CP031609.1_2054388_2055843_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|446aa|down_4|CP031609.1_2055936_2057274_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|CP031609.1_2057251_2058031_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|CP031609.1_2058027_2058888_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|CP031609.1_2059035_2059611_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|CP031609.1_2059627_2059888_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|CP031609.1_2059878_2061150_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCA_003410275.1_ASM341027v1	CP031609	Escherichia coli strain S10 chromosome, complete genome	3	2075828-2076040	3,2,2	PILER-CR,CRT,CRISPRCasFinder	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,DEDDh,c2c9_V-U4,cas14j,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG	Type I-E	GTGTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTGTTCCCCGCGCCAGCGGGGATAAACCGN,TGTGTTCCCCGCGCCAGCGGGGATAAACCG	31,32,30	0	0	NA	NA	I-E:I-E:I-E	3,3,3	3	TypeI-E	cas3,DEDDh,c2c9_V-U4,cas14j,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG	NA,NA	NA|245aa|up_9|CP031609.1_2065493_2066228_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|up_8|CP031609.1_2066492_2066645_+	pfam01848, HOK_GEF, Hok/gef family	cas3|900aa|up_7|CP031609.1_2066839_2069539_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|521aa|up_6|CP031609.1_2069968_2071531_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|179aa|up_5|CP031609.1_2071527_2072064_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|352aa|up_4|CP031609.1_2072078_2073134_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|CP031609.1_2073144_2073891_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|CP031609.1_2073872_2074523_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|308aa|up_1|CP031609.1_2074519_2075443_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|CP031609.1_2075439_2075733_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|CP031609.1_2076122_2077160_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|CP031609.1_2077411_2078320_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|CP031609.1_2078321_2079749_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|CP031609.1_2079748_2080354_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|CP031609.1_2080403_2080727_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|CP031609.1_2080920_2081232_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|CP031609.1_2081250_2081961_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|CP031609.1_2081960_2082440_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|CP031609.1_2082436_2083486_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|CP031609.1_2083466_2084228_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCA_003410275.1_ASM341027v1	CP031609	Escherichia coli strain S10 chromosome, complete genome	4	3195586-3195709	3	CRISPRCasFinder	no	DEDDh	cas3,DEDDh,c2c9_V-U4,cas14j,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,c2c9_V-U4,cas14j,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG	NA,NA|75aa|down_7|CP031609.1_3204295_3204520_-,NA|30aa|down_8|CP031609.1_3204606_3204696_+	NA|79aa|up_9|CP031609.1_3184493_3184730_-	PRK15396, PRK15396, major outer membrane lipoprotein	NA|471aa|up_8|CP031609.1_3185040_3186453_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_7|CP031609.1_3187009_3187219_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_6|CP031609.1_3187674_3188301_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_5|CP031609.1_3188321_3190424_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|216aa|up_4|CP031609.1_3190427_3191075_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_3|CP031609.1_3191138_3191807_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_2|CP031609.1_3191803_3192589_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_1|CP031609.1_3192592_3193405_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|102aa|up_0|CP031609.1_3195145_3195451_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|CP031609.1_3196024_3197281_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|CP031609.1_3197321_3198695_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|CP031609.1_3198909_3199551_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|CP031609.1_3199590_3200739_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|CP031609.1_3201029_3202241_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|CP031609.1_3202353_3203286_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|CP031609.1_3203282_3204308_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|75aa|down_7|CP031609.1_3204295_3204520_-	NA	NA|30aa|down_8|CP031609.1_3204606_3204696_+	NA	NA|390aa|down_9|CP031609.1_3204861_3206031_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]
GCA_003410275.1_ASM341027v1	CP031609	Escherichia coli strain S10 chromosome, complete genome	5	4029805-4029952	4,4	CRISPRCasFinder,PILER-CR	no		cas3,DEDDh,c2c9_V-U4,cas14j,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG	Orphan	TTTCTAAGCTGCCTGTACGGCAGTGAAC,GAATTTCTAAGCTGCCTGTACGGCAGTGAAC	28,31	0	0	NA	NA	I-F:I-F	2,2	2	Orphan	cas3,DEDDh,c2c9_V-U4,cas14j,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG	NA,NA|61aa|down_9|CP031609.1_4041860_4042043_+	NA|431aa|up_9|CP031609.1_4014629_4015922_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|448aa|up_8|CP031609.1_4016012_4017356_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|204aa|up_7|CP031609.1_4017366_4017978_-	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|1369aa|up_6|CP031609.1_4018136_4022243_-	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|165aa|up_5|CP031609.1_4022377_4022872_-	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|322aa|up_4|CP031609.1_4023416_4024382_+	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|589aa|up_3|CP031609.1_4024504_4026271_+	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|574aa|up_2|CP031609.1_4026271_4027993_+	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|235aa|up_1|CP031609.1_4028034_4028739_+	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|73aa|up_0|CP031609.1_4029023_4029242_+	PRK00276, infA, translation initiation factor IF-1; Validated	NA|759aa|down_0|CP031609.1_4030164_4032441_-	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|107aa|down_1|CP031609.1_4032471_4032792_-	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|75aa|down_2|CP031609.1_4033114_4033339_+	PRK09937, PRK09937, cold shock-like protein CspD	NA|649aa|down_3|CP031609.1_4033411_4035358_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|372aa|down_4|CP031609.1_4035354_4036470_-	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|331aa|down_5|CP031609.1_4036584_4037577_+	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|553aa|down_6|CP031609.1_4037573_4039232_-	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|232aa|down_7|CP031609.1_4039657_4040353_+	PRK05420, PRK05420, aquaporin Z; Provisional	NA|342aa|down_8|CP031609.1_4040584_4041610_+	COG3547, COG3547, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|61aa|down_9|CP031609.1_4041860_4042043_+	NA
GCA_003410275.1_ASM341027v1	CP031609	Escherichia coli strain S10 chromosome, complete genome	6	4640049-4640184	5	CRISPRCasFinder	no		cas3,DEDDh,c2c9_V-U4,cas14j,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG	Orphan	GCCATTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,c2c9_V-U4,cas14j,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG	NA|82aa|up_9|CP031609.1_4629372_4629618_-,NA|272aa|up_8|CP031609.1_4630030_4630846_-,NA|78aa|down_4|CP031609.1_4644616_4644850_-,NA|63aa|down_8|CP031609.1_4647897_4648086_+	NA|82aa|up_9|CP031609.1_4629372_4629618_-	NA	NA|272aa|up_8|CP031609.1_4630030_4630846_-	NA	NA|350aa|up_7|CP031609.1_4631088_4632138_-	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|319aa|up_6|CP031609.1_4632224_4633181_-	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism]	NA|324aa|up_5|CP031609.1_4633177_4634149_-	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism]	NA|500aa|up_4|CP031609.1_4634141_4635641_-	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|329aa|up_3|CP031609.1_4635673_4636660_-	cd20002, PBP1_LsrB_Quorum_Sensing-like, ligand-binding protein LsrB-like of ABC transporter periplasmic binding protein	NA|147aa|up_2|CP031609.1_4636910_4637351_-	COG4405, COG4405, Uncharacterized protein conserved in bacteria [Function unknown]	NA|461aa|up_1|CP031609.1_4637617_4639000_-	PRK06846, PRK06846, putative deaminase; Validated	NA|317aa|up_0|CP031609.1_4639009_4639960_-	PRK12352, PRK12352, putative carbamate kinase; Reviewed	NA|473aa|down_0|CP031609.1_4640205_4641624_-	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|516aa|down_1|CP031609.1_4641623_4643171_-	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|288aa|down_2|CP031609.1_4643160_4644024_-	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|202aa|down_3|CP031609.1_4644063_4644669_-	sd00045, ANK, ankyrin repeats	NA|78aa|down_4|CP031609.1_4644616_4644850_-	NA	NA|166aa|down_5|CP031609.1_4644926_4645424_+	pfam06496, DUF1097, Protein of unknown function (DUF1097)	NA|311aa|down_6|CP031609.1_4645515_4646448_+	PRK10094, PRK10094, HTH-type transcriptional activator AllS	NA|363aa|down_7|CP031609.1_4646489_4647578_-	smart00052, EAL, Putative diguanylate phosphodiesterase	NA|63aa|down_8|CP031609.1_4647897_4648086_+	NA	NA|678aa|down_9|CP031609.1_4648452_4650486_-	PRK09928, PRK09928, choline transport protein BetT; Provisional
