The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP031565	Enterobacter hormaechei strain S13 chromosome, complete genome	4722490	533	33632	4722490	holin,head	Salmonella_phage(30.43%)	54	NA	NA
AXO43294.1|533_1268_-	hypothetical protein	NA	H6WRU1	Salmonella_phage	85.6	8.0e-114
AXO43295.1|1285_1672_-	hypothetical protein	NA	A0A1V0E5P4	Salmonella_phage	94.5	2.1e-65
AXO43296.1|1668_2067_-	hypothetical protein	NA	Q5G8X5	Enterobacteria_phage	90.9	1.3e-62
AXO43297.1|2074_2437_-	hypothetical protein	NA	A0A1V0E5P3	Salmonella_phage	90.8	3.9e-61
AXO43298.1|2429_2609_-	DUF551 domain-containing protein	NA	Q5G8X7	Enterobacteria_phage	91.5	1.2e-26
AXO43299.1|2608_3010_-	hypothetical protein	NA	I6S619	Salmonella_phage	76.7	1.1e-56
AXO43300.1|3072_3357_-	hypothetical protein	NA	A0A1V0E5P8	Salmonella_phage	75.3	1.7e-32
AXO43301.1|3367_4465_-	hypothetical protein	NA	G0ZND9	Cronobacter_phage	84.4	8.7e-181
AXO43302.1|4477_4939_-	hypothetical protein	NA	G0ZND8	Cronobacter_phage	80.4	4.5e-62
AXO43303.1|4951_6217_-	hypothetical protein	NA	Q5G8Y2	Enterobacteria_phage	90.3	2.8e-215
AXO43304.1|6219_7146_-|head	phage head morphogenesis protein	head	Q5G8Y3	Enterobacteria_phage	91.9	1.7e-161
AXO43305.1|7105_8455_-	DUF1073 domain-containing protein	NA	A0A1V0E5Q5	Salmonella_phage	87.5	1.0e-231
AXO43306.1|8470_9949_-	DNA-packaging protein	NA	G0ZND4	Cronobacter_phage	87.0	5.0e-256
AXO43307.1|9935_10415_-	DUF2280 domain-containing protein	NA	I6S1P9	Salmonella_phage	86.5	1.6e-59
AXO43308.1|10447_11086_-	hypothetical protein	NA	I6S676	Salmonella_phage	90.6	3.4e-113
AXO43309.1|11089_11296_-	hypothetical protein	NA	NA	NA	NA	NA
AXO43310.1|11495_11705_-	hypothetical protein	NA	NA	NA	NA	NA
AXO43311.1|11770_11986_-	hypothetical protein	NA	K7PM01	Enterobacterial_phage	90.9	1.2e-17
AXO43312.1|11936_12215_-	hypothetical protein	NA	K7PGW4	Enterobacterial_phage	95.5	5.1e-05
AXO43313.1|12211_12754_-	hypothetical protein	NA	A0A0U2S643	Escherichia_phage	69.8	2.7e-74
AXO43314.1|12756_13032_-|holin	phage holin family protein	holin	S4TNV9	Salmonella_phage	41.0	5.8e-09
AXO43315.1|13028_13430_-	hypothetical protein	NA	NA	NA	NA	NA
AXO43316.1|13705_14203_-	antiterminator	NA	G8C7V7	Escherichia_phage	99.4	1.1e-93
AXO43317.1|14202_14319_-	hypothetical protein	NA	NA	NA	NA	NA
AXO43318.1|14315_14678_-	RusA family crossover junction endodeoxyribonuclease	NA	K7PM48	Enterobacteria_phage	84.0	1.9e-52
AXO43319.1|14674_14965_-	DUF1364 domain-containing protein	NA	K7PGZ6	Enterobacteria_phage	91.7	6.3e-46
AXO43320.1|14957_15128_-	hypothetical protein	NA	K7P7K0	Enterobacteria_phage	92.5	1.0e-19
AXO43321.1|15127_15583_-	hypothetical protein	NA	K7P7B8	Enterobacteria_phage	75.5	4.0e-63
AXO43322.1|17337_17568_-	hypothetical protein	NA	G8C7U9	Escherichia_phage	94.7	1.4e-32
AXO43323.1|17564_17909_-	ArsR family transcriptional regulator	NA	G8C7U7	Escherichia_phage	96.5	4.6e-56
AXO43324.1|17905_18778_-	AAA family ATPase	NA	K7PLU3	Enterobacteria_phage	66.2	5.8e-103
AXO43325.1|18762_19632_-	replication protein	NA	K7PGT1	Enterobacteria_phage	51.0	5.1e-67
AXO43326.1|19976_20522_-	hypothetical protein	NA	G8C7U3	Escherichia_phage	90.6	2.0e-85
AXO43327.1|20551_20779_-	helix-turn-helix domain-containing protein	NA	G8C7U2	Escherichia_phage	100.0	4.1e-37
AXO43328.1|20889_21579_+	helix-turn-helix transcriptional regulator	NA	G8C7U1	Escherichia_phage	100.0	2.2e-126
AXO43329.1|21803_23108_+	hypothetical protein	NA	NA	NA	NA	NA
AXO43330.1|23434_23632_-	hypothetical protein	NA	G8C7T7	Escherichia_phage	92.3	1.3e-23
AXO43331.1|24036_24300_+	hypothetical protein	NA	S4TNW9	Salmonella_phage	43.4	2.3e-07
AXO43332.1|24618_24828_+	cell division protein FtsZ	NA	M9NZE2	Enterobacteria_phage	95.7	6.7e-34
AXO43333.1|24898_25867_+	hypothetical protein	NA	M9P0E1	Enterobacteria_phage	74.9	1.6e-45
AXO43334.1|25874_26159_+	host nuclease inhibitor GamL	NA	G8C7T1	Escherichia_phage	92.6	7.2e-47
AXO43335.1|26177_26924_+	phage recombination protein Bet	NA	A0A0M4RD39	Salmonella_phage	65.3	5.3e-65
AXO43336.1|26920_27538_+	exonuclease	NA	A0A0S2SY31	Pseudomonas_phage	57.3	6.2e-59
AXO43337.1|27534_27963_+	regulator	NA	G8C7S8	Escherichia_phage	95.1	2.9e-71
AXO43338.1|27959_28112_+	DUF1317 family protein	NA	T1SAR0	Salmonella_phage	44.2	1.3e-05
AXO43339.1|28108_28768_+	DNA methyltransferase	NA	G8C7S6	Escherichia_phage	91.3	3.9e-120
AXO43340.1|28764_29820_+	DNA cytosine methyltransferase	NA	Q858D4	Salmonella_phage	66.6	5.8e-150
AXO43341.1|29816_30035_+	hypothetical protein	NA	NA	NA	NA	NA
AXO43342.1|30031_30643_+	hypothetical protein	NA	NA	NA	NA	NA
AXO43343.1|30734_30950_+	TraR/DksA family transcriptional regulator	NA	A0A0N7C211	Escherichia_phage	63.8	2.0e-17
AXO43344.1|30949_31678_+	hypothetical protein	NA	L0AQZ0	Klebsiella_phage	38.6	1.8e-41
AXO43345.1|31687_31963_+	hypothetical protein	NA	NA	NA	NA	NA
AXO47442.1|32070_32319_+	DNA-binding protein	NA	S4TND0	Salmonella_phage	50.0	8.3e-15
AXO43346.1|32351_33632_+	DUF3596 domain-containing protein	NA	B6DZ48	Enterobacteria_phage	51.2	5.1e-124
>prophage 2
CP031565	Enterobacter hormaechei strain S13 chromosome, complete genome	4722490	204848	263631	4722490	protease,portal,tail,plate,tRNA,terminase,integrase,holin	Escherichia_phage(17.95%)	76	233436:233450	263186:263200
AXO43506.1|204848_205349_+|tRNA	YbaK/prolyl-tRNA synthetase associated domain-containing protein	tRNA	NA	NA	NA	NA
AXO43507.1|205757_207089_+	MFS transporter	NA	NA	NA	NA	NA
AXO43508.1|209246_209693_+	DUF441 domain-containing protein	NA	NA	NA	NA	NA
AXO43509.1|209676_210468_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AXO43510.1|210567_211755_+	cyanate MFS transporter	NA	NA	NA	NA	NA
AXO43511.1|211786_212494_-	hypothetical protein	NA	NA	NA	NA	NA
AXO43512.1|212645_212990_+	DUF488 domain-containing protein	NA	NA	NA	NA	NA
AXO43513.1|212990_213296_-	hypothetical protein	NA	NA	NA	NA	NA
AXO43514.1|213376_213631_-	DUF333 domain-containing protein	NA	NA	NA	NA	NA
AXO43515.1|213942_214971_+	sensor domain-containing diguanylate cyclase	NA	G3MA91	Bacillus_virus	32.1	1.1e-12
AXO43516.1|215016_215115_+	hypothetical protein	NA	NA	NA	NA	NA
AXO47454.1|215115_215190_+	protein YoaJ	NA	NA	NA	NA	NA
AXO43517.1|215243_215492_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
AXO47455.1|215861_215954_+	stress response membrane protein YncL	NA	NA	NA	NA	NA
AXO43518.1|216078_217578_+	cyclic diguanylate phosphodiesterase	NA	NA	NA	NA	NA
AXO43519.1|217582_217828_-	DUF2543 family protein	NA	NA	NA	NA	NA
AXO43520.1|217903_218071_-	isocitrate dehydrogenase	NA	Q77Z09	Phage_21	92.6	2.3e-21
AXO43521.1|218365_218521_+	type II toxin-antitoxin system HicA family toxin	NA	A0A0D4DC32	Acinetobacter_phage	78.4	1.2e-16
AXO43522.1|218541_218952_+	type II toxin-antitoxin system HicB family antitoxin	NA	Q775F5	Haemophilus_virus	50.4	1.9e-35
AXO43523.1|219033_219600_+	serine acetyltransferase	NA	NA	NA	NA	NA
AXO43524.1|219603_220026_-|tail	tail fiber assembly protein	tail	U5P083	Shigella_phage	47.9	2.0e-24
AXO43525.1|222591_223143_-|tail	phage tail protein I	tail	A0A0F7LDF3	Escherichia_phage	41.0	3.3e-27
AXO43526.1|223135_224050_-|plate	baseplate assembly protein	plate	D5LGZ3	Escherichia_phage	49.7	3.1e-67
AXO43527.1|224033_224387_-|plate	baseplate assembly protein	plate	E5FFH4	Burkholderia_phage	50.0	6.5e-21
AXO43528.1|224423_225542_-	late control protein D	NA	R9TNM7	Vibrio_phage	33.1	2.7e-36
AXO43529.1|225544_225760_-|tail	phage tail protein	tail	R9TR63	Vibrio_phage	52.9	8.8e-13
AXO43530.1|225734_226205_-|tail	phage tail protein	tail	D4HTW5	Vibrio_phage	34.9	1.1e-15
AXO43531.1|228406_228694_-|tail	phage tail assembly protein	tail	NA	NA	NA	NA
AXO43532.1|228745_229252_-|tail	phage tail protein	tail	NA	NA	NA	NA
AXO43533.1|229248_230718_-|tail	phage tail protein	tail	R9TMQ0	Vibrio_phage	47.1	4.1e-77
AXO43534.1|230614_231379_-|plate	phage baseplate assembly protein V	plate	A0A192Y8K5	Salmonella_phage	30.6	4.0e-07
AXO43535.1|231371_231926_-	hypothetical protein	NA	NA	NA	NA	NA
AXO43536.1|231934_232597_-	hypothetical protein	NA	R9TR34	Vibrio_phage	36.7	1.4e-21
AXO43537.1|232598_232955_-	hypothetical protein	NA	NA	NA	NA	NA
AXO43538.1|232954_233290_-	DUF2190 family protein	NA	Q9EYD5	Enterobacteria_phage	42.7	4.9e-10
AXO43539.1|233358_235395_-|protease	Clp protease ClpP	protease	S5M7Q8	Escherichia_phage	53.7	1.8e-200
233436:233450	attL	CACCGTCAACGGTGA	NA	NA	NA	NA
AXO43540.1|235407_236928_-|portal	phage portal protein	portal	K7PHM5	Enterobacterial_phage	55.8	9.6e-154
AXO43541.1|236936_237152_-	hypothetical protein	NA	NA	NA	NA	NA
AXO43542.1|237148_239269_-|terminase	phage terminase large subunit family protein	terminase	A5LH27	Enterobacteria_phage	74.8	1.1e-304
AXO43543.1|239272_239776_-	DUF1441 family protein	NA	K7PJY2	Enterobacterial_phage	62.9	3.1e-48
AXO43544.1|239955_240180_-	hypothetical protein	NA	NA	NA	NA	NA
AXO43545.1|240178_240610_+	hypothetical protein	NA	NA	NA	NA	NA
AXO43546.1|240644_241142_+	hypothetical protein	NA	NA	NA	NA	NA
AXO43547.1|241652_241844_-	hypothetical protein	NA	K7PM01	Enterobacterial_phage	85.4	3.2e-14
AXO43548.1|241934_242147_+	hypothetical protein	NA	NA	NA	NA	NA
AXO43549.1|242398_242593_-	hypothetical protein	NA	K7PM01	Enterobacterial_phage	75.0	2.9e-15
AXO43550.1|242549_242825_-	hypothetical protein	NA	G8C7W1	Escherichia_phage	80.9	1.7e-29
AXO43551.1|242826_243456_-	glycoside hydrolase family 19 protein	NA	G8C7W0	Escherichia_phage	86.6	2.3e-101
AXO43552.1|243455_243737_-|holin	phage holin family protein	holin	K7PKN9	Enterobacterial_phage	46.2	1.3e-19
AXO43553.1|243723_244110_-	hypothetical protein	NA	A0A192Y8P2	Salmonella_phage	86.7	2.7e-52
AXO43554.1|244871_245063_-	hypothetical protein	NA	NA	NA	NA	NA
AXO47456.1|245721_246327_-	hypothetical protein	NA	H9C175	Pectobacterium_phage	64.3	2.1e-72
AXO43555.1|246339_247359_-	DUF968 domain-containing protein	NA	A0A291AWV9	Escherichia_phage	51.6	1.5e-94
AXO43556.1|247366_247567_-	hypothetical protein	NA	H6WRY8	Salmonella_phage	49.2	7.9e-08
AXO43557.1|247822_248077_-	cloacin	NA	NA	NA	NA	NA
AXO43558.1|248086_249601_-	hypothetical protein	NA	NA	NA	NA	NA
AXO43559.1|249946_250180_-	hypothetical protein	NA	H6WRY6	Salmonella_phage	66.2	3.3e-21
AXO43560.1|250218_250452_-	DNA damage-inducible protein I	NA	K7PM44	Enterobacteria_phage	71.4	2.4e-24
AXO43561.1|250800_251175_-	hypothetical protein	NA	M9NZE4	Enterobacteria_phage	52.7	4.5e-12
AXO43562.1|251174_251507_-	hypothetical protein	NA	NA	NA	NA	NA
AXO43563.1|251503_251764_-	DUF977 family protein	NA	H6WRX9	Salmonella_phage	69.9	1.7e-26
AXO43564.1|251767_252187_-	PerC family transcriptional regulator	NA	NA	NA	NA	NA
AXO47457.1|252201_252783_-	replication protein	NA	A0A0U2JGJ0	Escherichia_phage	77.5	5.2e-68
AXO43565.1|253812_254367_-	hypothetical protein	NA	M9NZI6	Enterobacteria_phage	36.0	2.9e-15
AXO43566.1|254368_254593_-	XRE family transcriptional regulator	NA	K7PKH4	Enterobacteria_phage	57.1	1.2e-17
AXO43567.1|254701_255091_+	helix-turn-helix domain-containing protein	NA	K7PH19	Enterobacteria_phage	61.6	1.4e-19
AXO43568.1|255272_255521_+	hypothetical protein	NA	NA	NA	NA	NA
AXO43569.1|255793_257845_+	exonuclease	NA	S4TNL0	Salmonella_phage	51.8	6.7e-126
AXO43570.1|257897_258143_+	excisionase	NA	NA	NA	NA	NA
AXO43571.1|258123_259260_+|integrase	integrase	integrase	O21925	Phage_21	59.5	2.9e-123
AXO43572.1|259246_259525_-	hypothetical protein	NA	NA	NA	NA	NA
AXO43573.1|259569_259863_-	hypothetical protein	NA	NA	NA	NA	NA
AXO43574.1|259974_261225_-	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	94.4	7.9e-21
AXO43575.1|261342_262005_+	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA	NA
AXO43576.1|262004_262478_+	NUDIX hydrolase	NA	NA	NA	NA	NA
AXO43577.1|262518_263631_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
263186:263200	attR	TCACCGTTGACGGTG	NA	NA	NA	NA
>prophage 3
CP031565	Enterobacter hormaechei strain S13 chromosome, complete genome	4722490	442436	452436	4722490	tRNA	Klebsiella_phage(38.46%)	15	NA	NA
AXO43744.1|442436_442730_-	hypothetical protein	NA	A0A286S2B5	Klebsiella_phage	82.5	7.0e-29
AXO43745.1|442731_442959_-	transcriptional regulator	NA	A0A0N7C1T6	Escherichia_phage	54.3	3.9e-11
AXO43746.1|443083_443785_+	helix-turn-helix transcriptional regulator	NA	Q76H56	Enterobacteria_phage	46.2	3.6e-55
AXO43747.1|443960_444269_+	hypothetical protein	NA	A0A286S1T9	Klebsiella_phage	48.0	3.8e-17
AXO43748.1|444258_444450_+	hypothetical protein	NA	NA	NA	NA	NA
AXO47466.1|444626_444851_+	hypothetical protein	NA	NA	NA	NA	NA
AXO43749.1|444843_445251_+	hypothetical protein	NA	A0A286S1Q6	Klebsiella_phage	86.6	1.4e-46
AXO43750.1|445222_445444_+	hypothetical protein	NA	A0A286S1P6	Klebsiella_phage	66.7	1.1e-18
AXO43751.1|445440_445854_+	hypothetical protein	NA	A0A286S1S2	Klebsiella_phage	67.2	1.1e-46
AXO43752.1|445854_446079_+	hypothetical protein	NA	A0A1B5FPG2	Escherichia_phage	58.3	8.3e-14
AXO47467.1|446229_446478_+	excisionase	NA	S4TND0	Salmonella_phage	91.4	5.4e-38
AXO43753.1|446522_447815_+	DUF3596 domain-containing protein	NA	S4TSP2	Salmonella_phage	95.3	2.1e-242
AXO43754.1|447999_449202_+	nicotinate phosphoribosyltransferase	NA	A0A2L0UZQ6	Agrobacterium_phage	31.9	7.6e-45
AXO43755.1|449370_450771_+|tRNA	asparagine--tRNA ligase	tRNA	A0A2P1EMB4	Moumouvirus	37.3	1.9e-79
AXO43756.1|451377_452436_+	phosphoporin PhoE	NA	Q1MVN1	Enterobacteria_phage	50.1	3.1e-90
>prophage 4
CP031565	Enterobacter hormaechei strain S13 chromosome, complete genome	4722490	2544926	2643528	4722490	capsid,protease,portal,tail,tRNA,terminase,integrase,head	uncultured_Caudovirales_phage(44.44%)	89	2564107:2564123	2593341:2593357
AXO45546.1|2544926_2545874_-|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	30.5	8.4e-07
AXO45547.1|2545898_2546408_-	peptide deformylase	NA	E3SLL2	Synechococcus_phage	40.3	4.4e-18
AXO45548.1|2546535_2547660_+	DNA-protecting protein DprA	NA	NA	NA	NA	NA
AXO45549.1|2547631_2548105_+	DUF494 domain-containing protein	NA	NA	NA	NA	NA
AXO45550.1|2548131_2548686_+	hypothetical protein	NA	NA	NA	NA	NA
AXO45551.1|2548678_2549251_+	L-threonylcarbamoyladenylate synthase type 1 TsaC	NA	S4VW33	Pandoravirus	26.2	4.9e-10
AXO45552.1|2549255_2550074_+	shikimate dehydrogenase	NA	NA	NA	NA	NA
AXO45553.1|2550070_2550319_+	DUF1488 domain-containing protein	NA	NA	NA	NA	NA
AXO45554.1|2550294_2550849_-	gamma carbonic anhydrase family protein	NA	NA	NA	NA	NA
AXO45555.1|2556898_2557120_-	hypothetical protein	NA	NA	NA	NA	NA
AXO45556.1|2557368_2560482_-	hydrophobe/amphiphile efflux-1 family RND transporter	NA	NA	NA	NA	NA
AXO45557.1|2560493_2561633_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AXO45558.1|2562029_2562677_+	acrEF/envCD operon transcriptional regulator	NA	NA	NA	NA	NA
AXO45559.1|2562671_2564756_-	bifunctional diguanylate cyclase/phosphodiesterase	NA	G3MA91	Bacillus_virus	34.8	7.0e-22
2564107:2564123	attL	AGTATCGCCAGCCAGCT	NA	NA	NA	NA
AXO45560.1|2564895_2565060_-	DUF2556 domain-containing protein	NA	NA	NA	NA	NA
AXO45561.1|2565426_2566653_+|integrase	site-specific integrase	integrase	A0A2H4JB45	uncultured_Caudovirales_phage	62.2	1.4e-150
AXO45562.1|2566744_2567551_+	hypothetical protein	NA	NA	NA	NA	NA
AXO45563.1|2567655_2567940_+	AlpA family phage regulatory protein	NA	NA	NA	NA	NA
AXO45564.1|2567948_2568728_+	hypothetical protein	NA	Q8HA02	Enterobacteria_phage	52.0	3.6e-40
AXO47525.1|2569191_2569728_+	host cell division inhibitor Icd-like protein	NA	A0A2H4JGN8	uncultured_Caudovirales_phage	52.3	1.6e-10
AXO45565.1|2569720_2569918_+	hypothetical protein	NA	NA	NA	NA	NA
AXO45566.1|2569910_2570138_+	aminotransferase	NA	A0A2H4JBA1	uncultured_Caudovirales_phage	90.1	3.0e-27
AXO45567.1|2570134_2570503_+	hypothetical protein	NA	A0A2H4JCX7	uncultured_Caudovirales_phage	82.8	5.7e-52
AXO45568.1|2570499_2570865_+	hypothetical protein	NA	NA	NA	NA	NA
AXO45569.1|2570864_2572994_+	DUF927 domain-containing protein	NA	A0A1W6JPG0	Morganella_phage	57.4	4.1e-187
AXO45570.1|2573339_2573675_+	hypothetical protein	NA	NA	NA	NA	NA
AXO45571.1|2573721_2574234_-	hypothetical protein	NA	NA	NA	NA	NA
AXO45572.1|2574496_2575657_+|capsid	phage major capsid protein	capsid	A0A2H4JED2	uncultured_Caudovirales_phage	95.9	1.1e-205
AXO45573.1|2575708_2576269_+|head,protease	HK97 family phage prohead protease	head,protease	A0A2H4JB68	uncultured_Caudovirales_phage	92.5	2.8e-95
AXO47526.1|2576279_2577506_+|portal	phage portal protein	portal	A0A2H4JFJ9	uncultured_Caudovirales_phage	97.1	1.3e-233
AXO45574.1|2577502_2577841_+|head,tail	head-tail adaptor protein	head,tail	A0A2H4JHK5	uncultured_Caudovirales_phage	92.9	1.1e-52
AXO45575.1|2577837_2578131_+|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2H4JD08	uncultured_Caudovirales_phage	90.7	2.2e-46
AXO45576.1|2578130_2578574_+	HNH endonuclease	NA	A0A2H4JAS8	uncultured_Caudovirales_phage	93.9	3.9e-79
AXO45577.1|2578847_2579204_+|terminase	phage terminase small subunit P27 family	terminase	A0A2H4JHS3	uncultured_Caudovirales_phage	94.9	3.0e-58
AXO45578.1|2579187_2580849_+|terminase	terminase large subunit	terminase	A0A2H4JB64	uncultured_Caudovirales_phage	97.8	0.0e+00
AXO47527.1|2580881_2581475_+|tail	tail assembly protein	tail	F1C572	Cronobacter_phage	51.8	5.9e-51
AXO45579.1|2581483_2581672_+	hypothetical protein	NA	NA	NA	NA	NA
AXO45580.1|2581825_2582122_-	Fis family transcriptional regulator	NA	NA	NA	NA	NA
AXO45581.1|2582145_2583111_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
AXO45582.1|2583441_2584182_-	carbonic anhydrase family protein	NA	NA	NA	NA	NA
AXO45583.1|2584319_2585201_-	50S ribosomal protein L11 methyltransferase	NA	NA	NA	NA	NA
AXO45584.1|2585212_2586664_-	sodium/pantothenate symporter	NA	NA	NA	NA	NA
AXO45585.1|2586653_2586896_-	DUF997 family protein	NA	NA	NA	NA	NA
AXO45586.1|2587004_2588354_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
AXO45587.1|2588364_2588829_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
AXO47528.1|2588850_2589303_-	type II 3-dehydroquinate dehydratase	NA	NA	NA	NA	NA
AXO45588.1|2589537_2590137_-	protein-methionine-sulfoxide reductase heme-binding subunit MsrQ	NA	NA	NA	NA	NA
AXO45589.1|2590137_2591139_-	protein-methionine-sulfoxide reductase catalytic subunit MsrP	NA	NA	NA	NA	NA
AXO45590.1|2591216_2592191_-	oxidoreductase	NA	NA	NA	NA	NA
AXO45591.1|2592374_2594315_+	RNase E specificity factor CsrD	NA	NA	NA	NA	NA
2593341:2593357	attR	AGTATCGCCAGCCAGCT	NA	NA	NA	NA
AXO45592.1|2594597_2595641_+	rod shape-determining protein	NA	F2Y0P3	Organic_Lake_phycodnavirus	22.3	6.7e-05
AXO45593.1|2595703_2596720_+	rod shape-determining protein MreC	NA	NA	NA	NA	NA
AXO45594.1|2596719_2597208_+	rod shape-determining protein MreD	NA	NA	NA	NA	NA
AXO45595.1|2597217_2597811_+	septum formation inhibitor Maf	NA	NA	NA	NA	NA
AXO45596.1|2597800_2599270_+	ribonuclease G	NA	NA	NA	NA	NA
AXO45597.1|2603201_2604647_+|protease	metalloprotease TldD	protease	NA	NA	NA	NA
AXO45598.1|2604696_2605623_-	HTH-type transcriptional activator AaeR	NA	NA	NA	NA	NA
AXO45599.1|2605802_2606006_+	DUF1656 domain-containing protein	NA	NA	NA	NA	NA
AXO47529.1|2606013_2606946_+	p-hydroxybenzoic acid efflux pump subunit AaeA	NA	NA	NA	NA	NA
AXO45600.1|2606951_2608919_+	p-hydroxybenzoic acid efflux pump subunit AaeB	NA	NA	NA	NA	NA
AXO45601.1|2609005_2610460_+	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AXO45602.1|2610505_2610778_+	hypothetical protein	NA	NA	NA	NA	NA
AXO45603.1|2610837_2611101_-	DUF1471 domain-containing protein	NA	NA	NA	NA	NA
AXO45604.1|2611479_2611950_-	transcriptional regulator ArgR	NA	NA	NA	NA	NA
AXO45605.1|2612347_2613286_+	malate dehydrogenase	NA	NA	NA	NA	NA
AXO45606.1|2613336_2614404_-|protease	serine endoprotease DegS	protease	NA	NA	NA	NA
AXO45607.1|2614496_2615864_-|protease	serine endoprotease DegQ	protease	A0A1B1IT49	uncultured_Mediterranean_phage	26.4	8.7e-21
AXO45608.1|2616034_2616433_-	DUF1043 family protein	NA	NA	NA	NA	NA
AXO45609.1|2616622_2617747_+	cell division protein ZapE	NA	NA	NA	NA	NA
AXO45610.1|2618039_2618468_+	50S ribosomal protein L13	NA	NA	NA	NA	NA
AXO45611.1|2618483_2618876_+	30S ribosomal protein S9	NA	NA	NA	NA	NA
AXO45612.1|2619002_2619185_-	hypothetical protein	NA	NA	NA	NA	NA
AXO45613.1|2619183_2619822_+	stringent starvation protein A	NA	NA	NA	NA	NA
AXO47530.1|2619827_2620325_+|protease	ClpXP protease specificity-enhancing factor	protease	A0A1S5R3H3	Pseudomonas_phage	54.6	3.8e-27
AXO45614.1|2620427_2621210_+	transcriptional regulator NanR	NA	NA	NA	NA	NA
AXO45615.1|2621332_2622226_+	N-acetylneuraminate lyase	NA	NA	NA	NA	NA
AXO45616.1|2622338_2623829_+	MFS transporter	NA	Q6JIH2	Burkholderia_virus	21.3	1.4e-08
AXO47531.1|2623917_2624790_+	ROK family protein	NA	NA	NA	NA	NA
AXO45617.1|2624786_2625257_+	YhcH/YjgK/YiaL family protein	NA	NA	NA	NA	NA
AXO45618.1|2625346_2626639_-	cytosine deaminase	NA	NA	NA	NA	NA
AXO45619.1|2626628_2627879_-	cytosine permease	NA	NA	NA	NA	NA
AXO45620.1|2628066_2629485_-	glutamate synthase small subunit	NA	NA	NA	NA	NA
AXO45621.1|2629494_2633955_-	glutamate synthase large subunit	NA	NA	NA	NA	NA
AXO47532.1|2634642_2635584_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	34.4	2.3e-17
AXO45622.1|2635563_2637066_-	ATP-binding protein	NA	A0A248XCZ8	Klebsiella_phage	43.9	5.7e-82
AXO45623.1|2637203_2638850_+	DAK2 domain-containing protein	NA	NA	NA	NA	NA
AXO45624.1|2638942_2639962_-	NAD(P)-dependent alcohol dehydrogenase	NA	A0A0G2Y405	Acanthamoeba_polyphaga_mimivirus	31.0	3.2e-44
AXO45625.1|2640045_2640549_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AXO45626.1|2640672_2643528_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	36.9	1.6e-141
>prophage 5
CP031565	Enterobacter hormaechei strain S13 chromosome, complete genome	4722490	2784241	2836294	4722490	capsid,protease,portal,tail,tRNA,terminase,integrase,head,holin	Cronobacter_phage(56.0%)	65	2783292:2783341	2813991:2814040
2783292:2783341	attL	AAATTTGGTGGCCCCTGCTGGACTTGAACCAGCGACCAAGCGATTATGAG	NA	NA	NA	NA
AXO45764.1|2784241_2785264_-|integrase	site-specific integrase	integrase	F1BUS9	Erwinia_phage	64.6	1.0e-122
AXO45765.1|2785265_2785847_-	phage repressor protein	NA	A0A218M4J1	Erwinia_phage	36.4	4.1e-28
AXO45766.1|2785987_2786209_+	regulator	NA	NA	NA	NA	NA
AXO45767.1|2786239_2786743_+	hypothetical protein	NA	F1BUN6	Cronobacter_phage	70.1	1.6e-57
AXO45768.1|2786752_2786947_+	hypothetical protein	NA	NA	NA	NA	NA
AXO45769.1|2786936_2787365_+	hypothetical protein	NA	F1BUN5	Cronobacter_phage	50.0	2.0e-24
AXO45770.1|2787364_2787766_+	hypothetical protein	NA	F1BUN2	Cronobacter_phage	54.1	6.0e-39
AXO45771.1|2787832_2788066_+	DUF2732 family protein	NA	NA	NA	NA	NA
AXO45772.1|2788056_2788923_+	DNA adenine methylase	NA	F1BUN1	Cronobacter_phage	93.2	3.2e-146
AXO45773.1|2788919_2789132_+	hypothetical protein	NA	NA	NA	NA	NA
AXO45774.1|2789100_2791149_+	replication endonuclease	NA	F1BUM9	Cronobacter_phage	76.3	7.3e-306
AXO45775.1|2791270_2791477_+	hypothetical protein	NA	NA	NA	NA	NA
AXO45776.1|2791450_2791774_-	transcriptional regulator	NA	F1BUM8	Cronobacter_phage	88.6	3.3e-48
AXO45777.1|2791770_2792823_-|portal	phage portal protein	portal	F1BUM7	Cronobacter_phage	79.2	6.2e-160
AXO45778.1|2792819_2794595_-|terminase	terminase	terminase	F1BUM5	Cronobacter_phage	82.8	2.8e-290
AXO45779.1|2794767_2795562_+|capsid	phage capsid protein	capsid	F1BUM4	Cronobacter_phage	54.9	3.8e-69
AXO45780.1|2795621_2796644_+|capsid	phage major capsid protein, P2 family	capsid	F1BUM2	Cronobacter_phage	79.1	1.6e-152
AXO45781.1|2796646_2797348_+|terminase	terminase	terminase	F1BUM0	Cronobacter_phage	66.8	3.3e-85
AXO45782.1|2797446_2797899_+|head	head completion protein	head	F1BUL8	Cronobacter_phage	77.3	2.2e-58
AXO45783.1|2797895_2798402_+|tail	phage tail protein	tail	F1BUL7	Cronobacter_phage	69.1	2.8e-65
AXO45784.1|2798398_2799106_+	hypothetical protein	NA	F1BUL6	Cronobacter_phage	77.8	2.6e-101
AXO45785.1|2799102_2800230_+	DUF2586 domain-containing protein	NA	F1BUL5	Cronobacter_phage	82.9	2.5e-175
AXO45786.1|2800226_2800682_+	DUF2597 family protein	NA	F1BUL4	Cronobacter_phage	73.5	5.4e-60
AXO45787.1|2800691_2800979_+|holin	holin	holin	C7BGD7	Burkholderia_phage	51.8	2.1e-14
AXO45788.1|2800975_2801317_+	M15 family peptidase	NA	F1BUL3	Cronobacter_phage	89.1	3.2e-49
AXO45789.1|2801316_2801685_+	hypothetical protein	NA	F1BUL2	Cronobacter_phage	53.3	4.7e-22
AXO45790.1|2801581_2801821_+	hypothetical protein	NA	F1BUL1	Cronobacter_phage	56.6	4.2e-16
AXO45791.1|2801804_2802065_+	hypothetical protein	NA	A5X9I7	Aeromonas_virus	62.8	2.8e-21
AXO45792.1|2802252_2804565_+|tail	phage tail tape measure protein	tail	F1BUK9	Cronobacter_phage	56.3	2.8e-213
AXO45793.1|2804561_2804891_+	DUF2590 family protein	NA	F1BUK8	Cronobacter_phage	72.5	4.6e-37
AXO45794.1|2804887_2806072_+	hypothetical protein	NA	F1BUK6	Cronobacter_phage	78.5	1.2e-175
AXO45795.1|2806064_2806652_+	hypothetical protein	NA	F1BUK5	Cronobacter_phage	80.5	9.9e-91
AXO45796.1|2806661_2809118_+|tail	phage tail protein	tail	F1BUK3	Cronobacter_phage	57.1	1.5e-172
AXO45797.1|2809119_2809554_+|tail	tail fiber assembly protein	tail	B6SCW7	Bacteriophage	61.5	4.0e-20
AXO45798.1|2809543_2810269_+	hypothetical protein	NA	F1BUK1	Cronobacter_phage	51.0	1.2e-61
AXO45799.1|2810240_2810789_+	hypothetical protein	NA	F1BUJ9	Cronobacter_phage	72.9	1.1e-62
AXO45800.1|2810791_2812468_+	hypothetical protein	NA	F1BUJ7	Cronobacter_phage	63.7	6.3e-207
AXO45801.1|2812633_2812894_+	hypothetical protein	NA	NA	NA	NA	NA
AXO45802.1|2813311_2813890_+	hypothetical protein	NA	NA	NA	NA	NA
AXO47535.1|2814220_2815642_+	DUF4102 domain-containing protein	NA	H7BV31	unidentified_phage	28.0	3.9e-08
2813991:2814040	attR	AAATTTGGTGGCCCCTGCTGGACTTGAACCAGCGACCAAGCGATTATGAG	NA	NA	NA	NA
AXO47536.1|2816004_2816364_+	hypothetical protein	NA	NA	NA	NA	NA
AXO45803.1|2816506_2816716_+	DNA-binding protein	NA	NA	NA	NA	NA
AXO45804.1|2816724_2817504_+	hypothetical protein	NA	Q8HA02	Enterobacteria_phage	51.5	9.6e-41
AXO47537.1|2817778_2818378_+	host cell division inhibitor Icd-like protein	NA	NA	NA	NA	NA
AXO45805.1|2818343_2818556_+	hypothetical protein	NA	A0A2H4JFH8	uncultured_Caudovirales_phage	95.1	4.2e-23
AXO45806.1|2818548_2818776_+	aminotransferase	NA	A0A2H4JBA1	uncultured_Caudovirales_phage	86.5	1.7e-27
AXO45807.1|2818772_2819141_+	hypothetical protein	NA	A0A2H4JCX7	uncultured_Caudovirales_phage	99.2	1.3e-61
AXO45808.1|2819137_2820502_+	hypothetical protein	NA	A0A2H4JFA4	uncultured_Caudovirales_phage	97.1	2.0e-259
AXO45809.1|2820855_2821092_+	hypothetical protein	NA	NA	NA	NA	NA
AXO45810.1|2821133_2821907_-	hypothetical protein	NA	NA	NA	NA	NA
AXO45811.1|2822165_2823332_+|capsid	phage major capsid protein	capsid	A0A2H4JED2	uncultured_Caudovirales_phage	99.5	1.5e-215
AXO45812.1|2823383_2823944_+|head,protease	HK97 family phage prohead protease	head,protease	A0A2H4JB68	uncultured_Caudovirales_phage	98.9	5.9e-101
AXO47538.1|2823954_2825181_+|portal	phage portal protein	portal	A0A2H4JFJ9	uncultured_Caudovirales_phage	98.3	2.1e-236
AXO45813.1|2825177_2825516_+|head,tail	head-tail adaptor protein	head,tail	A0A2H4JHK5	uncultured_Caudovirales_phage	98.2	2.4e-57
AXO45814.1|2825512_2825806_+|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2H4JD08	uncultured_Caudovirales_phage	97.9	4.7e-49
AXO45815.1|2825805_2826249_+	HNH endonuclease	NA	A0A2H4JAS8	uncultured_Caudovirales_phage	97.3	4.4e-83
AXO45816.1|2826521_2826878_+|terminase	phage terminase small subunit P27 family	terminase	A0A2H4JHS3	uncultured_Caudovirales_phage	95.8	4.6e-59
AXO45817.1|2826861_2828523_+|terminase	terminase large subunit	terminase	A0A2H4JB64	uncultured_Caudovirales_phage	97.6	0.0e+00
AXO47539.1|2828555_2829149_+|tail	tail assembly protein	tail	F1C572	Cronobacter_phage	51.8	5.9e-51
AXO45818.1|2829515_2830055_-	NYN domain-containing protein	NA	NA	NA	NA	NA
AXO45819.1|2830363_2830870_+	G/U mismatch-specific DNA glycosylase	NA	NA	NA	NA	NA
AXO45820.1|2830970_2832815_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	33.7	8.4e-35
AXO45821.1|2832967_2834713_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	39.0	1.4e-76
AXO45822.1|2834828_2835044_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
AXO45823.1|2835280_2836294_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	58.9	1.4e-108
>prophage 6
CP031565	Enterobacter hormaechei strain S13 chromosome, complete genome	4722490	3049120	3056958	4722490	transposase,tRNA,integrase	Pseudomonas_phage(16.67%)	7	3052097:3052111	3056625:3056639
AXO46011.1|3049120_3050218_+	peptide chain release factor 2	NA	A0A0S4KWG0	Pseudomonas_phage	39.0	3.1e-05
AXO46012.1|3050228_3051746_+|tRNA	lysine--tRNA ligase	tRNA	A0A2K9L3L6	Tupanvirus	37.5	7.7e-87
AXO46013.1|3051794_3052337_-	isopentenyl-diphosphate Delta-isomerase	NA	NA	NA	NA	NA
3052097:3052111	attL	TCGCCTGCTCTGTCG	NA	NA	NA	NA
AXO46014.1|3052500_3053241_+	LysM peptidoglycan-binding domain-containing protein	NA	A0A7K9	Microcystis_virus	35.7	2.2e-10
AXO46015.1|3053529_3055131_+|integrase	site-specific integrase	integrase	A0A059XK29	uncultured_phage	26.2	7.3e-11
AXO46016.1|3055123_3055783_+	DUF4145 domain-containing protein	NA	M1PSB6	Streptococcus_phage	33.9	3.6e-33
AXO46017.1|3055810_3056958_-|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	93.7	4.1e-149
3056625:3056639	attR	CGACAGAGCAGGCGA	NA	NA	NA	NA
>prophage 7
CP031565	Enterobacter hormaechei strain S13 chromosome, complete genome	4722490	3286820	3297785	4722490		Enterobacteria_phage(66.67%)	13	NA	NA
AXO47554.1|3286820_3289154_-	DNA primase	NA	Q7M2A8	Enterobacteria_phage	82.2	0.0e+00
AXO46212.1|3289168_3289489_-	hypothetical protein	NA	NA	NA	NA	NA
AXO46213.1|3289485_3289713_-	hypothetical protein	NA	NA	NA	NA	NA
AXO46214.1|3289709_3290267_-	host cell division inhibitor Icd-like protein	NA	Q7M2A7	Enterobacteria_phage	67.6	2.9e-31
AXO46215.1|3290263_3290530_-	AlpA family transcriptional regulator	NA	Q7M299	Enterobacteria_phage	70.5	1.1e-28
AXO46216.1|3291073_3291805_+	glycoprotein 3	NA	Q7M2A2	Enterobacteria_phage	58.6	3.9e-68
AXO46217.1|3291801_3292065_+	hypothetical protein	NA	Q7M294	Enterobacteria_phage	58.0	1.6e-19
AXO46218.1|3292061_3292628_+	Polarity suppression protein	NA	Q7M2A1	Enterobacteria_phage	65.4	8.7e-60
AXO46219.1|3293015_3293660_-	hypothetical protein	NA	NA	NA	NA	NA
AXO46220.1|3293656_3294769_-	DUF262 domain-containing protein	NA	A0A0R6PKN1	Moraxella_phage	27.2	6.4e-14
AXO46221.1|3294768_3295971_-	DUF4102 domain-containing protein	NA	A0A1B5FPC6	Escherichia_phage	49.4	1.3e-105
AXO46222.1|3296451_3297297_+	hypothetical protein	NA	NA	NA	NA	NA
AXO46223.1|3297578_3297785_+	AlpA family transcriptional regulator	NA	A0A0R6PGY4	Moraxella_phage	41.1	8.5e-05
>prophage 8
CP031565	Enterobacter hormaechei strain S13 chromosome, complete genome	4722490	3820431	3826710	4722490		Enterobacteria_phage(50.0%)	6	NA	NA
AXO46662.1|3820431_3821823_+	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	32.8	1.7e-19
AXO46663.1|3821996_3822893_+	GalU regulator GalF	NA	A0A127AW70	Bacillus_phage	41.9	2.0e-42
AXO46664.1|3823251_3824337_+	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	52.0	7.4e-100
AXO46665.1|3824336_3825236_+	dTDP-4-dehydrorhamnose reductase	NA	A0A140G5S3	Enterobacteria_phage	36.5	2.0e-29
AXO46666.1|3825288_3826167_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	64.8	3.9e-107
AXO46667.1|3826170_3826710_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	56.9	9.8e-53
>prophage 9
CP031565	Enterobacter hormaechei strain S13 chromosome, complete genome	4722490	3999451	4082831	4722490	capsid,protease,portal,tail,transposase,tRNA,terminase,head,holin	Enterobacteria_phage(26.92%)	95	NA	NA
AXO46816.1|3999451_4001185_-|tRNA	arginine--tRNA ligase	tRNA	A0A1V0SIS8	Klosneuvirus	36.8	2.0e-86
AXO46817.1|4001423_4001984_+	VOC family protein	NA	NA	NA	NA	NA
AXO46818.1|4002062_4002806_+	copper homeostasis protein CutC	NA	NA	NA	NA	NA
AXO46819.1|4002786_4003026_+	hypothetical protein	NA	NA	NA	NA	NA
AXO46820.1|4002980_4003952_-|tRNA	tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	tRNA	NA	NA	NA	NA
AXO46821.1|4003948_4004692_-	carboxy-S-adenosyl-L-methionine synthase CmoA	NA	A0A1S6L2V9	Erwinia_phage	30.2	6.1e-29
AXO46822.1|4004733_4005129_-	hypothetical protein	NA	NA	NA	NA	NA
AXO46823.1|4005180_4005954_-	DUF72 domain-containing protein	NA	Q859D1	Escherichia_coli_phage	81.1	5.0e-58
AXO46824.1|4005932_4007246_-	DUF3596 domain-containing protein	NA	Q8W658	Enterobacteria_phage	86.5	2.2e-223
AXO46825.1|4007301_4007538_-	excisionase	NA	Q8W657	Enterobacteria_phage	84.6	1.4e-35
AXO46826.1|4007545_4007782_-	hypothetical protein	NA	NA	NA	NA	NA
AXO46827.1|4007774_4008107_-	hypothetical protein	NA	NA	NA	NA	NA
AXO46828.1|4008099_4008456_-	hypothetical protein	NA	NA	NA	NA	NA
AXO46829.1|4008445_4008874_-	hypothetical protein	NA	NA	NA	NA	NA
AXO46830.1|4008866_4009127_-	hypothetical protein	NA	NA	NA	NA	NA
AXO46831.1|4009126_4009990_-	ORF6N domain-containing protein	NA	F1C5A3	Cronobacter_phage	78.2	5.1e-128
AXO46832.1|4010002_4010506_-	hypothetical protein	NA	F1C5A2	Cronobacter_phage	61.7	7.0e-53
AXO46833.1|4010505_4010859_-	hypothetical protein	NA	A0A1B5FPB3	Escherichia_phage	70.0	1.0e-37
AXO46834.1|4010965_4011352_-	S24 family peptidase	NA	F1C5A0	Cronobacter_phage	63.2	2.3e-40
AXO46835.1|4011424_4011718_-	hypothetical protein	NA	NA	NA	NA	NA
AXO46836.1|4011904_4012564_-	LexA family transcriptional regulator	NA	C6ZR47	Salmonella_phage	68.3	4.2e-90
AXO46837.1|4012674_4012890_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AXO46838.1|4012945_4014093_-|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	93.7	4.1e-149
AXO46839.1|4014629_4015466_+	antitermination protein	NA	A0A1B5FPA5	Escherichia_phage	77.8	1.1e-119
AXO46840.1|4015577_4016498_-	hypothetical protein	NA	A0A1B5FPA3	Escherichia_phage	74.2	6.6e-57
AXO46841.1|4016642_4017029_+	hypothetical protein	NA	A0A192Y8P2	Salmonella_phage	93.8	7.3e-58
AXO46842.1|4017015_4017297_+|holin	phage holin family protein	holin	K7PKN9	Enterobacterial_phage	46.2	1.7e-19
AXO46843.1|4017296_4017839_+	hypothetical protein	NA	A0A0U2S643	Escherichia_phage	72.1	2.2e-76
AXO46844.1|4017835_4018108_+	hypothetical protein	NA	G8C7W1	Escherichia_phage	68.2	2.9e-21
AXO46845.1|4018064_4018259_+	hypothetical protein	NA	K7PM01	Enterobacterial_phage	90.7	9.1e-17
AXO46846.1|4018396_4018579_+	hypothetical protein	NA	NA	NA	NA	NA
AXO47578.1|4019045_4019621_+	DUF1983 domain-containing protein	NA	G8C7Q4	Escherichia_phage	49.4	7.8e-32
AXO46847.1|4019632_4021090_+	glycosyltransferase family 2 protein	NA	K7PKP3	Enterobacterial_phage	89.9	3.0e-269
AXO46848.1|4021101_4021437_+	hypothetical protein	NA	NA	NA	NA	NA
AXO46849.1|4021390_4021648_-	hypothetical protein	NA	K7P7V5	Enterobacteria_phage	96.3	9.2e-33
AXO46850.1|4021813_4022404_+	hypothetical protein	NA	K7PGW6	Enterobacterial_phage	81.1	1.8e-95
AXO46851.1|4022403_4022754_+	HNH endonuclease	NA	K7PHK9	Enterobacteria_phage	81.9	9.2e-52
AXO46852.1|4022910_4023384_+|terminase	phage terminase small subunit P27 family	terminase	K7PHI2	Enterobacteria_phage	99.4	7.7e-86
AXO46853.1|4023383_4025120_+|terminase	terminase large subunit	terminase	K7PKT2	Enterobacteria_phage	100.0	0.0e+00
AXO46854.1|4025119_4026424_+|portal	phage portal protein	portal	K7PJU5	Enterobacteria_phage	93.3	4.7e-234
AXO46855.1|4026437_4027286_+|protease	Clp protease ClpP	protease	K7PH05	Enterobacteria_phage	90.7	7.8e-137
AXO46856.1|4027295_4028507_+|capsid	phage major capsid protein	capsid	K7PM57	Enterobacteria_phage	87.9	9.5e-197
AXO46857.1|4028550_4028877_+|head,tail	phage gp6-like head-tail connector protein	head,tail	K7PKT4	Enterobacteria_phage	81.5	1.3e-47
AXO46858.1|4028885_4029224_+|head,tail	head-tail adaptor protein	head,tail	A0A2H4JHK5	uncultured_Caudovirales_phage	73.2	6.0e-40
AXO46859.1|4029220_4029670_+	HK97 gp10 family phage protein	NA	K7P6X4	Enterobacteria_phage	98.0	4.2e-73
AXO46860.1|4029666_4030014_+	DUF3168 domain-containing protein	NA	Q9MCS8	Enterobacteria_phage	99.1	3.8e-58
AXO46861.1|4030073_4030517_+	hypothetical protein	NA	K7PHL2	Enterobacterial_phage	93.8	4.6e-72
AXO46862.1|4030525_4030909_+|tail	phage tail protein	tail	K7PKV6	Enterobacterial_phage	93.7	4.4e-63
AXO46863.1|4030917_4031196_+	DUF4035 domain-containing protein	NA	Q9MCS5	Enterobacteria_phage	95.7	1.8e-42
AXO46864.1|4031242_4031608_+	hypothetical protein	NA	NA	NA	NA	NA
AXO46865.1|4031669_4035161_+|tail	phage tail tape measure protein	tail	A0A2H4JHR1	uncultured_Caudovirales_phage	85.8	0.0e+00
AXO46866.1|4035163_4035502_+|tail	phage tail protein	tail	K7PKL8	Enterobacterial_phage	59.8	7.3e-38
AXO46867.1|4035498_4036257_+|tail	phage minor tail protein L	tail	A0A1W6JNX9	Morganella_phage	63.6	2.3e-95
AXO46868.1|4036259_4036970_+	peptidase P60	NA	F1C573	Cronobacter_phage	69.4	5.6e-96
AXO46869.1|4036969_4037557_+|tail	tail assembly protein	tail	A0A1P8DTG7	Proteus_phage	47.4	6.1e-48
AXO46870.1|4037609_4041491_+	DUF1983 domain-containing protein	NA	Q9MCR7	Enterobacteria_phage	60.0	0.0e+00
AXO46871.1|4041492_4042458_+	hypothetical protein	NA	G1CSU0	Cronobacter_virus	39.6	6.9e-57
AXO46872.1|4042517_4043831_+|tail	phage tail protein	tail	A0A220NRP2	Escherichia_phage	59.4	3.2e-129
AXO46873.1|4043926_4044193_-	DinI family protein	NA	K7PKM2	Enterobacterial_phage	88.6	2.4e-36
AXO46874.1|4044557_4045124_-	hydrolase	NA	NA	NA	NA	NA
AXO46875.1|4045387_4047160_+|tRNA	aspartate--tRNA ligase	tRNA	NA	NA	NA	NA
AXO46876.1|4047161_4047605_+	dihydroneopterin triphosphate diphosphatase	NA	NA	NA	NA	NA
AXO46877.1|4047632_4048373_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
AXO46878.1|4048407_4048929_+	crossover junction endodeoxyribonuclease RuvC	NA	G3MA90	Bacillus_virus	35.1	2.6e-10
AXO46879.1|4049009_4049624_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
AXO46880.1|4049632_4050643_+	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.9	2.4e-07
AXO46881.1|4050695_4051481_-	zinc ABC transporter permease subunit ZnuB	NA	NA	NA	NA	NA
AXO46882.1|4051477_4052233_-	zinc ABC transporter ATP-binding protein ZnuC	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	29.8	8.8e-15
AXO46883.1|4052295_4053255_+	zinc ABC transporter substrate-binding protein ZnuA	NA	NA	NA	NA	NA
AXO46884.1|4053270_4054590_+	murein DD-endopeptidase MepM	NA	A8ATH6	Listeria_phage	40.9	1.2e-14
AXO46885.1|4054707_4055679_+	lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase	NA	NA	NA	NA	NA
AXO46886.1|4055722_4057165_-	pyruvate kinase	NA	NA	NA	NA	NA
AXO46887.1|4057279_4058149_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
AXO46888.1|4058505_4059981_+	glucose-6-phosphate dehydrogenase	NA	H6WFS4	Cyanophage	36.2	6.0e-76
AXO46889.1|4060214_4062026_+	phosphogluconate dehydratase	NA	NA	NA	NA	NA
AXO46890.1|4062065_4062707_+	keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase	NA	NA	NA	NA	NA
AXO46891.1|4062781_4063960_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
AXO46892.1|4064131_4064782_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
AXO46893.1|4066913_4067576_-	exodeoxyribonuclease X	NA	NA	NA	NA	NA
AXO46894.1|4067600_4068251_-	carbon-nitrogen hydrolase family protein	NA	NA	NA	NA	NA
AXO46895.1|4068362_4068593_-	DNA polymerase III subunit theta	NA	H9C187	Pectobacterium_phage	61.8	7.0e-16
AXO46896.1|4068730_4069102_+	CopC domain-containing protein YobA	NA	NA	NA	NA	NA
AXO46897.1|4069103_4069973_+	hypothetical protein	NA	NA	NA	NA	NA
AXO46898.1|4069989_4070328_+	DUF2511 domain-containing protein	NA	NA	NA	NA	NA
AXO46899.1|4070453_4070651_-	hypothetical protein	NA	NA	NA	NA	NA
AXO46900.1|4070696_4071677_-	DUF535 domain-containing protein	NA	NA	NA	NA	NA
AXO46901.1|4071844_4072489_+	protein-serine/threonine phosphatase	NA	A0A222YWF0	Escherichia_phage	49.8	1.9e-55
AXO46902.1|4072523_4072763_-	DUF1480 family protein	NA	NA	NA	NA	NA
AXO46903.1|4072869_4074333_-	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	NA	NA	NA	NA	NA
AXO46904.1|4074389_4077023_-	MCE family protein	NA	NA	NA	NA	NA
AXO47579.1|4076991_4078275_-	paraquat-inducible protein A	NA	NA	NA	NA	NA
AXO46905.1|4078407_4078905_+	GAF domain-containing protein	NA	NA	NA	NA	NA
AXO46906.1|4079001_4079688_+	RNA chaperone ProQ	NA	NA	NA	NA	NA
AXO46907.1|4079707_4081756_+	carboxy terminal-processing peptidase	NA	A0A0R6PIZ1	Moraxella_phage	32.6	1.3e-81
AXO46908.1|4081949_4082831_+|protease	protease HtpX	protease	NA	NA	NA	NA
>prophage 10
CP031565	Enterobacter hormaechei strain S13 chromosome, complete genome	4722490	4629710	4637251	4722490		Escherichia_phage(83.33%)	9	NA	NA
AXO47362.1|4629710_4630565_+	benzoate transporter	NA	M1I711	Paramecium_bursaria_Chlorella_virus	33.2	8.1e-25
AXO47363.1|4630667_4630973_+	DUF1161 domain-containing protein	NA	NA	NA	NA	NA
AXO47364.1|4631103_4633542_+	dimethyl sulfoxide reductase subunit A	NA	A0A077SK27	Escherichia_phage	49.4	4.9e-216
AXO47365.1|4633552_4634170_+	dimethylsulfoxide reductase subunit B	NA	A0A077SL61	Escherichia_phage	59.1	1.0e-74
AXO47366.1|4634171_4635026_+	dimethylsulfoxide reductase	NA	A0A077SK59	Escherichia_phage	34.6	2.2e-22
AXO47367.1|4635070_4635685_+	Tat proofreading chaperone DmsD	NA	A0A077SLS7	Escherichia_phage	34.2	3.6e-27
AXO47368.1|4635794_4636106_+	DNA damage-inducible SOS regulon protein	NA	NA	NA	NA	NA
AXO47369.1|4636220_4636535_-	nitroreductase	NA	NA	NA	NA	NA
AXO47370.1|4636573_4637251_-	type A chloramphenicol O-acetyltransferase	NA	G3CFL0	Escherichia_phage	62.6	2.1e-76
>prophage 11
CP031565	Enterobacter hormaechei strain S13 chromosome, complete genome	4722490	4654230	4722403	4722490	tail,protease	Salmonella_phage(33.33%)	61	NA	NA
AXO47384.1|4654230_4655052_+|protease	serine protease	protease	NA	NA	NA	NA
AXO47385.1|4655057_4655387_-	multidrug/spermidine efflux SMR transporter subunit MdtI	NA	NA	NA	NA	NA
AXO47386.1|4655373_4655736_-	multidrug/spermidine efflux SMR transporter subunit MdtJ	NA	NA	NA	NA	NA
AXO47387.1|4657194_4658142_-	alcohol dehydrogenase	NA	NA	NA	NA	NA
AXO47388.1|4658134_4659169_-	flavin-dependent oxidoreductase	NA	NA	NA	NA	NA
AXO47389.1|4659376_4659724_+	HNH nuclease family protein	NA	NA	NA	NA	NA
AXO47390.1|4659791_4660238_-	hypothetical protein	NA	NA	NA	NA	NA
AXO47391.1|4660555_4661821_+	translesion error-prone DNA polymerase V subunit UmuC	NA	I6RSM4	Salmonella_phage	81.3	1.7e-204
AXO47392.1|4661925_4662945_+	membrane dipeptidase	NA	NA	NA	NA	NA
AXO47599.1|4663083_4663155_+	pyrroloquinoline quinone precursor peptide PqqA	NA	NA	NA	NA	NA
AXO47393.1|4663210_4664128_+	pyrroloquinoline quinone biosynthesis protein PqqB	NA	NA	NA	NA	NA
AXO47394.1|4664130_4664886_+	pyrroloquinoline quinone biosynthesis protein PqqC	NA	NA	NA	NA	NA
AXO47395.1|4664888_4665167_+	pyrroloquinoline quinone biosynthesis peptide chaperone PqqD	NA	NA	NA	NA	NA
AXO47396.1|4665153_4666296_+	pyrroloquinoline quinone biosynthesis protein PqqE	NA	NA	NA	NA	NA
AXO47397.1|4666301_4668578_+	pyrroloquinoline quinone biosynthesis protein PqqF	NA	NA	NA	NA	NA
AXO47398.1|4668665_4671095_-	glucose/quinate/shikimate family membrane-bound PQQ-dependent dehydrogenase	NA	NA	NA	NA	NA
AXO47600.1|4671441_4671861_-	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1W6JNS2	Morganella_phage	54.3	6.7e-33
AXO47399.1|4672186_4672387_+	hypothetical protein	NA	NA	NA	NA	NA
AXO47400.1|4672433_4673300_-	aldo/keto reductase family oxidoreductase	NA	NA	NA	NA	NA
AXO47401.1|4673445_4675107_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	61.9	6.4e-10
AXO47402.1|4675139_4675703_-	DNA endonuclease SmrA	NA	NA	NA	NA	NA
AXO47403.1|4676053_4676959_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXO47404.1|4677134_4678445_+	amidohydrolase	NA	NA	NA	NA	NA
AXO47405.1|4679933_4681460_+	p-aminobenzoyl-glutamate transporter	NA	NA	NA	NA	NA
AXO47406.1|4682167_4682920_+	fumarate/nitrate reduction transcriptional regulator Fnr	NA	NA	NA	NA	NA
AXO47407.1|4683057_4684008_+	universal stress protein UspE	NA	NA	NA	NA	NA
AXO47408.1|4684048_4685158_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
AXO47409.1|4685265_4686654_-	Re/Si-specific NAD(P)(+) transhydrogenase subunit beta	NA	NA	NA	NA	NA
AXO47410.1|4686664_4688194_-	Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha	NA	NA	NA	NA	NA
AXO47411.1|4688729_4689674_+	DUF1471 domain-containing protein	NA	NA	NA	NA	NA
AXO47412.1|4689859_4691242_+	amino acid permease	NA	NA	NA	NA	NA
AXO47413.1|4691281_4692004_+	dihydromonapterin reductase	NA	NA	NA	NA	NA
AXO47414.1|4692000_4692336_-	GlpM family protein	NA	NA	NA	NA	NA
AXO47415.1|4692463_4693180_+	two-component system response regulator RstA	NA	NA	NA	NA	NA
AXO47416.1|4693570_4693990_+	anti-adapter protein IraM	NA	Q20GJ2	Phage_258-320	38.9	3.7e-15
AXO47417.1|4694377_4694596_+	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	68.7	1.5e-20
AXO47418.1|4695073_4695301_+	hypothetical protein	NA	NA	NA	NA	NA
AXO47419.1|4695582_4696881_+	two-component system sensor histidine kinase RstB	NA	W8CYF6	Bacillus_phage	24.5	8.0e-16
AXO47420.1|4696955_4697885_+	DNA replication terminus site-binding protein	NA	NA	NA	NA	NA
AXO47421.1|4697885_4699280_-	class II fumarate hydratase	NA	NA	NA	NA	NA
AXO47422.1|4699462_4701109_-	fumarate hydratase	NA	NA	NA	NA	NA
AXO47423.1|4701308_4702484_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
AXO47424.1|4702583_4704110_+	DUF945 domain-containing protein	NA	NA	NA	NA	NA
AXO47425.1|4704210_4705239_-	Mal regulon transcriptional regulator MalI	NA	NA	NA	NA	NA
AXO47426.1|4705752_4706076_-	hypothetical protein	NA	K7PGV5	Enterobacterial_phage	53.3	6.8e-25
AXO47427.1|4706075_4706315_-	hypothetical protein	NA	K7P7N3	Enterobacteria_phage	72.2	9.1e-27
AXO47428.1|4706397_4707720_-|tail	phage tail protein	tail	G8C7R8	Escherichia_phage	58.2	1.0e-127
AXO47429.1|4707778_4708012_-	cor protein	NA	E4WL42	Enterobacteria_phage	78.9	3.9e-30
AXO47430.1|4708790_4709105_-	hypothetical protein	NA	A0A2P0WA17	Enterobacter_phage	64.7	1.5e-32
AXO47431.1|4712904_4713438_-|tail	tail assembly protein	tail	H6WRW3	Salmonella_phage	67.0	4.0e-54
AXO47601.1|4713380_4714100_-|tail	phage tail protein	tail	A0A1V0E5M9	Salmonella_phage	82.7	3.9e-121
AXO47432.1|4714099_4714804_-|tail	phage minor tail protein L	tail	A0A1V0E5N2	Salmonella_phage	98.7	9.3e-136
AXO47433.1|4714969_4715167_+	hypothetical protein	NA	NA	NA	NA	NA
AXO47434.1|4715322_4715670_-|tail	phage tail protein	tail	H6WRV8	Salmonella_phage	95.7	8.2e-61
AXO47435.1|4716016_4719262_-	hypothetical protein	NA	A0A125RNN2	Pseudomonas_phage	41.0	1.6e-118
AXO47436.1|4719322_4719820_-	hypothetical protein	NA	NA	NA	NA	NA
AXO47437.1|4719930_4720680_-	hypothetical protein	NA	A0A0P0ZD96	Stx2-converting_phage	57.9	1.4e-65
AXO47438.1|4720748_4721462_-	hypothetical protein	NA	H6WRU8	Salmonella_phage	50.6	8.8e-41
AXO47439.1|4721451_4721619_-	Arc family DNA-binding protein	NA	A0A077KAX5	Edwardsiella_phage	63.8	1.0e-08
AXO47440.1|4721727_4722027_+	Arc family DNA-binding protein	NA	H6WRU6	Salmonella_phage	89.4	3.1e-16
AXO47441.1|4722181_4722403_-	hypothetical protein	NA	K7PJU3	Enterobacteria_phage	80.3	4.2e-26
>prophage 1
CP031570	Enterobacter hormaechei strain S13 plasmid pIncAC2-1301491, complete sequence	158968	100081	117736	158968	transposase,integrase	Escherichia_phage(50.0%)	23	105765:105824	117861:117983
AXO48228.1|100081_101086_-|transposase	IS110 family transposase IS4321	transposase	NA	NA	NA	NA
AXO48229.1|101164_101599_-	mercuric resistance operon regulatory protein	NA	NA	NA	NA	NA
AXO48230.1|101670_102021_+	mercuric ion transporter MerT	NA	NA	NA	NA	NA
AXO48231.1|102034_102310_+	mercury resistance system periplasmic binding protein MerP	NA	NA	NA	NA	NA
AXO48299.1|102345_102768_+	mercury transporter MerC	NA	NA	NA	NA	NA
AXO48232.1|102819_104514_+	mercury(II) reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	8.8e-39
AXO48233.1|104531_104894_+	transcriptional regulator	NA	NA	NA	NA	NA
AXO48234.1|104890_105127_+	mercury resistance protein	NA	NA	NA	NA	NA
AXO48235.1|105123_105831_+	EAL domain-containing protein	NA	NA	NA	NA	NA
105765:105824	attL	TGTCATTTTCAGAAGACGACTGCACCAGTTGATTGGGCGTAATGGCTGTTGTGCAGCCAG	NA	NA	NA	NA
AXO48236.1|105869_107174_+|integrase	integrase	integrase	NA	NA	NA	NA
AXO48237.1|107220_107925_+|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	99.6	9.0e-139
AXO48238.1|107870_108128_-	hypothetical protein	NA	NA	NA	NA	NA
AXO48239.1|108066_109080_-|integrase	class 1 integron integrase IntI1	integrase	A0A1P8DJJ6	Virus_Rctr41k	45.5	6.1e-72
AXO48240.1|109246_110047_+	subclass B1 metallo-beta-lactamase VIM-1	NA	NA	NA	NA	NA
AXO48241.1|110140_110599_+	aminoglycoside N-acetyltransferase AAC(6')-Il	NA	NA	NA	NA	NA
AXO48242.1|110741_111215_+	trimethoprim-resistant dihydrofolate reductase DfrA1	NA	G3MBI7	Bacillus_virus	32.1	3.7e-19
AXO48243.1|111307_112099_+	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA1	NA	NA	NA	NA	NA
AXO48244.1|112928_113633_+|transposase	IS6 family transposase IS15DIV	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
AXO48245.1|113754_114660_+	Mph(A) family macrolide 2'-phosphotransferase	NA	NA	NA	NA	NA
AXO48246.1|114656_115895_+	MFS transporter	NA	NA	NA	NA	NA
AXO48247.1|115894_116479_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AXO48248.1|116424_116781_+	hypothetical protein	NA	NA	NA	NA	NA
AXO48249.1|116971_117736_-|transposase	IS6-like element IS6100 family transposase	transposase	A0A077SL39	Escherichia_phage	65.7	4.3e-86
117861:117983	attR	CTGGCTGCACAACAGCCATTACGCCCAATCAACTGGTGCAGTCGTCTTCTGAAAATGACAATCCAGTTAGGGTATAGCTCAACCTGACATAGAAGCAAAAACTCAACCACCTTCTACCAACTC	NA	NA	NA	NA
>prophage 1
CP031569	Enterobacter hormaechei strain S13 plasmid pIncFIB-1301491, complete sequence	140243	2067	10983	140243	integrase	Macacine_betaherpesvirus(42.86%)	7	1163:1175	6235:6247
1163:1175	attL	CTGGATGGAAGAA	NA	NA	NA	NA
AXO47975.1|2067_2844_+|integrase	phage integrase family protein	integrase	I3WFA4	Macacine_betaherpesvirus	91.2	7.0e-52
AXO47976.1|3545_4556_-	replication initiation protein	NA	J9Q7H0	Salmonella_phage	55.2	6.3e-85
AXO47977.1|5296_6463_+	plasmid-partitioning protein SopA	NA	A0A2I6B2X3	Macacine_betaherpesvirus	94.3	5.5e-218
6235:6247	attR	CTGGATGGAAGAA	NA	NA	NA	NA
AXO47978.1|6462_7428_+	ParB/RepB/Spo0J family plasmid partition protein	NA	I3WF22	Macacine_betaherpesvirus	76.9	9.8e-136
AXO47979.1|8077_9349_-	translesion error-prone DNA polymerase V subunit UmuC	NA	F1C5A5	Cronobacter_phage	62.7	2.3e-153
AXO47980.1|9348_9780_-	peptidase	NA	A0A1W6JNS2	Morganella_phage	53.3	1.0e-28
AXO47981.1|10011_10983_+	StbA family protein	NA	A0A222YXF2	Escherichia_phage	47.4	1.1e-73
>prophage 1
CP031566	Enterobacter hormaechei strain S13 plasmid pIncLM-1301491, complete sequence	64859	0	8908	64859		Pseudomonas_phage(100.0%)	10	NA	NA
AXO47602.1|1297_1558_-	TraK	NA	NA	NA	NA	NA
AXO47603.1|1547_2711_-	plasmid transfer ATPase TraJ	NA	NA	NA	NA	NA
AXO47604.1|2721_3501_-	conjugal transfer protein	NA	NA	NA	NA	NA
AXO47605.1|3497_3998_-	TraH	NA	NA	NA	NA	NA
AXO47606.1|4011_5991_-	hypothetical protein	NA	NA	NA	NA	NA
AXO47607.1|5977_6295_-	NikA	NA	NA	NA	NA	NA
AXO47608.1|6570_6936_+	MobC	NA	NA	NA	NA	NA
AXO47609.1|7436_7973_-	hypothetical protein	NA	NA	NA	NA	NA
AXO47610.1|8105_8417_-	hypothetical protein	NA	NA	NA	NA	NA
AXO47611.1|8473_8908_-	single-stranded DNA-binding protein	NA	A0A0U4K5C0	Pseudomonas_phage	48.0	1.3e-26
>prophage 2
CP031566	Enterobacter hormaechei strain S13 plasmid pIncLM-1301491, complete sequence	64859	12575	13400	64859		Marinomonas_phage(100.0%)	1	NA	NA
AXO47619.1|12575_13400_-	DUF4942 domain-containing protein	NA	I6RTT5	Marinomonas_phage	29.9	2.7e-17
>prophage 3
CP031566	Enterobacter hormaechei strain S13 plasmid pIncLM-1301491, complete sequence	64859	18562	45620	64859	integrase,protease,transposase	Enterobacteria_phage(20.0%)	31	42063:42076	50345:50358
AXO47673.1|18562_19537_-	recombinase	NA	A0A0A7NPX4	Enterobacteria_phage	52.0	4.6e-85
AXO47628.1|19777_20518_-|integrase	phage integrase family protein	integrase	I3WFA4	Macacine_betaherpesvirus	51.6	9.5e-22
AXO47674.1|20536_20740_-	hypothetical protein	NA	NA	NA	NA	NA
AXO47629.1|20781_21267_-	hypothetical protein	NA	NA	NA	NA	NA
AXO47630.1|21263_21851_-	restriction endonuclease	NA	NA	NA	NA	NA
AXO47631.1|21843_22092_-	XRE family transcriptional regulator	NA	A0A248SLB9	Klebsiella_phage	53.0	1.6e-10
AXO47632.1|22078_22549_-	hypothetical protein	NA	NA	NA	NA	NA
AXO47633.1|22689_23235_+	hypothetical protein	NA	NA	NA	NA	NA
AXO47634.1|23387_23795_-	hypothetical protein	NA	NA	NA	NA	NA
AXO47635.1|23796_24375_-	hypothetical protein	NA	NA	NA	NA	NA
AXO47636.1|24352_24709_-	hypothetical protein	NA	NA	NA	NA	NA
AXO47637.1|25236_26511_+	RelB antitoxin	NA	NA	NA	NA	NA
AXO47638.1|26528_26786_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AXO47639.1|26786_27470_+	hypothetical protein	NA	NA	NA	NA	NA
AXO47640.1|27514_27733_+	hypothetical protein	NA	NA	NA	NA	NA
AXO47641.1|27735_27945_+	hypothetical protein	NA	NA	NA	NA	NA
AXO47642.1|29319_29721_-	peptidase	NA	A0A1W6JNS2	Morganella_phage	55.3	1.1e-29
AXO47643.1|29845_30310_-	mRNA interferase PemK	NA	NA	NA	NA	NA
AXO47644.1|30528_31182_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AXO47645.1|31261_31645_+	DUF1496 domain-containing protein	NA	NA	NA	NA	NA
AXO47646.1|31749_32145_+	lytic transglycosylase	NA	NA	NA	NA	NA
AXO47647.1|33460_34411_+	DsbC family protein	NA	NA	NA	NA	NA
AXO47648.1|34423_36511_+	conjugal transfer protein TrbC	NA	NA	NA	NA	NA
AXO47649.1|37092_37698_-	DNA resolvase	NA	A0A1S5Y2X8	uncultured_archaeal_virus	35.3	5.5e-20
AXO47650.1|37792_40690_+|transposase	Tn3-like element Tn5403 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	37.8	2.5e-182
AXO47651.1|40797_41559_+	DeoR/GlpR transcriptional regulator	NA	A0A077SK06	Escherichia_phage	100.0	1.9e-134
AXO47652.1|41579_42440_-	class A extended-spectrum beta-lactamase SHV-30	NA	A0A077SL40	Escherichia_phage	99.3	1.7e-155
42063:42076	attL	GCTCATGGTAATGG	NA	NA	NA	NA
AXO47653.1|42605_43529_+|transposase	IS5 family transposase	transposase	Q1MVF0	Enterobacteria_phage	97.4	9.6e-173
AXO47675.1|43713_44247_-	aminoglycoside nucleotidyltransferase ANT(2'')-Ia	NA	NA	NA	NA	NA
AXO47654.1|44395_45409_+|integrase	class 1 integron integrase IntI1	integrase	A0A1P8DJJ6	Virus_Rctr41k	45.5	1.0e-71
AXO47655.1|45347_45620_+|transposase	transposase	transposase	NA	NA	NA	NA
50345:50358	attR	CCATTACCATGAGC	NA	NA	NA	NA
>prophage 1
CP031568	Enterobacter hormaechei strain S13 plasmid pSHV12-1301491, complete sequence	132677	1620	42330	132677	integrase,transposase	Escherichia_phage(52.63%)	49	9057:9116	30742:32095
AXO47831.1|1620_2325_+|transposase	IS6 family transposase IS15DIV	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
AXO47832.1|2468_3110_-	type A-2 chloramphenicol O-acetyltransferase CatII	NA	G3CFL0	Escherichia_phage	45.9	7.3e-55
AXO47833.1|3259_3760_-	hypothetical protein	NA	NA	NA	NA	NA
AXO47834.1|3839_4544_+|transposase	IS6 family transposase IS15DIV	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
AXO47835.1|6177_7080_-	NAD(P)-dependent oxidoreductase	NA	A0A077SLF7	Escherichia_phage	99.7	2.6e-159
AXO47836.1|7117_7351_-	hypothetical protein	NA	NA	NA	NA	NA
AXO47837.1|7341_8103_+	DeoR/GlpR transcriptional regulator	NA	A0A077SK06	Escherichia_phage	100.0	1.9e-134
AXO47838.1|8123_8984_-	class A extended-spectrum beta-lactamase SHV-12	NA	A0A077SL40	Escherichia_phage	99.3	2.2e-155
AXO47839.1|8947_9130_-	hypothetical protein	NA	NA	NA	NA	NA
9057:9116	attL	TGGCACTGTTGCAAATAGTCGGTGGTGATAAACTTATCATCCCCTTTTGCTGATGGAGCT	NA	NA	NA	NA
AXO47840.1|9120_9825_+|transposase	IS6 family transposase IS15DIV	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
AXO47841.1|9858_10350_-	hypothetical protein	NA	NA	NA	NA	NA
AXO47842.1|10455_11193_+	resolvase	NA	NA	NA	NA	NA
AXO47843.1|11189_11414_+	hypothetical protein	NA	NA	NA	NA	NA
AXO47844.1|11624_13118_+|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
AXO47845.1|13148_13400_+	hypothetical protein	NA	NA	NA	NA	NA
AXO47846.1|13293_13596_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
AXO47847.1|13682_14498_-	sulfonamide-resistant dihydropteroate synthase Sul2	NA	A0A0B5J4J5	Pandoravirus	27.6	2.7e-09
AXO47848.1|14827_15004_+	DUF4102 domain-containing protein	NA	T1S9J3	Salmonella_phage	68.6	1.0e-06
AXO47849.1|15185_16190_-|transposase	IS110-like element IS5075 family transposase	transposase	NA	NA	NA	NA
AXO47850.1|16268_19235_-|transposase	Tn3 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	72.9	0.0e+00
AXO47851.1|19355_20060_-|transposase	IS6 family transposase IS15DIV	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
AXO47852.1|20135_20636_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AXO47853.1|20654_20834_+	hypothetical protein	NA	NA	NA	NA	NA
AXO47854.1|20763_21603_-	sulfonamide-resistant dihydropteroate synthase Sul1	NA	A0A0B5J4J5	Pandoravirus	27.2	5.0e-11
AXO47855.1|21596_21944_-	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA	NA
AXO47856.1|23253_23685_-	DUF4440 domain-containing protein	NA	NA	NA	NA	NA
AXO47857.1|24047_24461_-	NAD(+)--rifampin ADP-ribosyltransferase	NA	NA	NA	NA	NA
AXO47965.1|24588_25398_-	AAC(3)-II family aminoglycoside N-acetyltransferase	NA	O64018	Bacillus_phage	29.3	1.2e-17
AXO47858.1|25639_26995_-|transposase	IS1380-like element IS1247 family transposase	transposase	A0A1X9I6F6	Streptococcus_phage	29.7	2.2e-45
AXO47859.1|27482_28064_-	aminoglycoside N-acetyltransferase AAC(6')-IIc	NA	NA	NA	NA	NA
AXO47860.1|28226_29240_+|integrase	class 1 integron integrase IntI1	integrase	A0A1P8DJJ6	Virus_Rctr41k	45.5	1.0e-71
AXO47861.1|29507_29999_+	hypothetical protein	NA	NA	NA	NA	NA
AXO47862.1|30032_30737_-|transposase	IS6 family transposase IS15DIV	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
AXO47863.1|31046_31940_+	hypothetical protein	NA	NA	NA	NA	NA
AXO47864.1|32111_32342_+	hypothetical protein	NA	NA	NA	NA	NA
30742:32095	attR	AGCTCCATCAGCAAAAGGGGATGATAAGTTTATCACCACCGACTATTTGCAACAGTGCCACAATGAGTTACTCCGTAGTAATGCAAAATTACTGCATCGCAATGCAGTAGAAACTATGAAAGCAAACCAACGGCTGGTTATTGATATAAGCACCCTTAAAGAGGTGCAGGATACGCTTATCCAGACGGTTGGCGATGTTGTTAAAATCCAGAGAGAAGGGGCTATTAAGCTCAGGGAAACAGAAAAACAGGTTCTTGCCATGCGTGAGAATTTGCGCACCCGACTGACACAAAAAGGGGTAGATCATGGTGCGTAACCTTAAGAGTAGTGACGATTTTTCCCGTGAACTGTCATTTCTTTTTCACCGGTCTATAAAGATTAGAAATTCAGGTTTCGCGATATTTGGTGCGGGCCTGCTGATAATGATTTTTGGTCTTTGCTTGTGGTTGCTGTCATTACACCTCTCACCTTCAGTTCTGGACTTTGATATTGATGTGCCCTTGTCATTCTTCAATTCATCTGAAGGTGAAGATAAGTTAGTGGTTTCGGATTTTGGCGATGCATTTGGAGGCTTCCTAACTACATATTCTAAGTTGCTATTAGGGATTATGGGGCTATTAGTAGTTTCTTCAACTGCCTTTAAAATTTTAAAGGGGGAGGAAATAGGTGAGATATTCCCGATGCTTCTAATTGCTGGCGCTTTTCTTATCGGCTTGTCAGTTTTTACATCTGCTTTAGGTTCGGAAGAGACTGATGCCACTTCAGCTTCGACTGTAAAGGTTATCAAGAAATATGTAAAACATGAAAAATACGATAAACTTGTCGCATATTTAAATGATAGTAATTGGCCCTCAGGCGAAGAGGTATCTGTAAACTATTTAAAGGCGCAACTACATATAAAACTCGGCAAGCCAGATGTGAAGTTAACACAGAATGTTGTTAGGGCGTATATGTCTGGTGTATTACAGTCAAATATTCCCGTGAAAGTTCGTTATGCATTGGAAAAGACAGCTTTAGATAAATCCGTCTCACCACTTGCGATTCGTTATGAGCAAAAACGTATGTCTAAATCACATACCTTTTCAAAAGCGTCGGTTAATTGTCTTAAAGTAGGTAGTCCCGTCGCATTCGTTGGCGTTTTGTTCGCTCTTCTTGGTATAAAAATCAGGCGGCGAGTCAGATTCTTAGAATCAAATTGAATGAAAGCCCGGTACGCTGGGCTTTTTTATTCAGTAACTTTTATCAAATATGTAGTAATTTACCGGAATCTGCTTCTCCAGCTTGTTAGCTGAAAAGCTTACTCAAGTATAATAATCTACTTCTGATTATGTTTTTTATGGTTTTATTTTTACAC	NA	NA	NA	NA
AXO47865.1|32520_32841_+	hypothetical protein	NA	NA	NA	NA	NA
AXO47866.1|32937_33156_+	hypothetical protein	NA	NA	NA	NA	NA
AXO47867.1|33357_33669_+	DUF957 domain-containing protein	NA	NA	NA	NA	NA
AXO47868.1|33673_34165_+	DUF3085 domain-containing protein	NA	NA	NA	NA	NA
AXO47869.1|34244_34538_+	hypothetical protein	NA	I7B2L9	Escherichia_phage	38.6	4.1e-05
AXO47870.1|34717_34921_+	hypothetical protein	NA	NA	NA	NA	NA
AXO47871.1|34975_35200_+	hypothetical protein	NA	NA	NA	NA	NA
AXO47872.1|35239_35440_+	hypothetical protein	NA	NA	NA	NA	NA
AXO47873.1|35662_35974_+	hypothetical protein	NA	NA	NA	NA	NA
AXO47874.1|36349_36631_+	hypothetical protein	NA	NA	NA	NA	NA
AXO47875.1|36847_37453_+	hypothetical protein	NA	NA	NA	NA	NA
AXO47876.1|37785_39154_+|transposase	IS3-like element ISKpn8 family transposase	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	95.5	9.4e-108
AXO47877.1|39329_40670_+|transposase	ISNCY family transposase	transposase	NA	NA	NA	NA
AXO47878.1|41091_42330_+|transposase	IS110 family transposase	transposase	A0A0U3ULR1	Bacillus_phage	23.1	2.5e-11
>prophage 2
CP031568	Enterobacter hormaechei strain S13 plasmid pSHV12-1301491, complete sequence	132677	85482	107781	132677	protease,transposase	Escherichia_phage(42.86%)	23	NA	NA
AXO47923.1|85482_86397_+|transposase	IS5 family transposase	transposase	A0A077SK28	Escherichia_phage	98.4	3.6e-172
AXO47924.1|86435_86564_-	ABC transporter	NA	NA	NA	NA	NA
AXO47925.1|86562_86880_+	hypothetical protein	NA	NA	NA	NA	NA
AXO47926.1|86930_87338_-	hypothetical protein	NA	NA	NA	NA	NA
AXO47927.1|87795_88467_-|protease	serine protease	protease	NA	NA	NA	NA
AXO47928.1|88511_88817_-	hypothetical protein	NA	NA	NA	NA	NA
AXO47929.1|89369_90773_+|transposase	ISNCY-like element ISKpn21 family transposase	transposase	NA	NA	NA	NA
AXO47930.1|90801_91434_-	hypothetical protein	NA	NA	NA	NA	NA
AXO47931.1|91487_91910_+|transposase	transposase	transposase	A0A1B0VFY5	Salmonella_phage	97.6	6.7e-65
AXO47968.1|91956_92880_+|transposase	IS5-like element IS903B family transposase	transposase	Q9MCT5	Escherichia_phage	99.3	1.1e-176
AXO47932.1|93286_93802_-	nuclease	NA	A0A1X6WF84	Pacmanvirus	38.6	2.1e-07
AXO47933.1|94016_95444_+	DNA cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	52.3	3.4e-100
AXO47934.1|95694_97014_+	DUF1173 family protein	NA	NA	NA	NA	NA
AXO47935.1|97026_97230_+	hypothetical protein	NA	NA	NA	NA	NA
AXO47936.1|97293_98499_-	ATP/GTP-binding protein	NA	NA	NA	NA	NA
AXO47937.1|98495_99314_-	DUF4942 domain-containing protein	NA	NA	NA	NA	NA
AXO47938.1|99779_100052_-	transcriptional repressor RcnR	NA	NA	NA	NA	NA
AXO47969.1|100172_101288_+	nickel/cobalt efflux protein RcnA	NA	NA	NA	NA	NA
AXO47939.1|101545_101980_-	copper-binding protein	NA	NA	NA	NA	NA
AXO47940.1|102197_103544_-	sensor histidine kinase	NA	W8CYF6	Bacillus_phage	26.6	8.8e-18
AXO47941.1|104738_106358_+	phosphoethanolamine--lipid A transferase	NA	NA	NA	NA	NA
AXO47942.1|106434_106911_+	cupin fold metalloprotein, WbuC family	NA	NA	NA	NA	NA
AXO47943.1|107076_107781_+|transposase	IS6 family transposase IS15DIV	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
>prophage 3
CP031568	Enterobacter hormaechei strain S13 plasmid pSHV12-1301491, complete sequence	132677	124260	132120	132677	integrase,transposase	Escherichia_phage(50.0%)	7	124147:124206	129276:129388
124147:124206	attL	TGCTGCGTAACATCGTTGCTGCTCCATAACATCAAACATCGACCCACGGCGTAACGCGCT	NA	NA	NA	NA
AXO47959.1|124260_125295_+|integrase	class 1 integron integrase IntI1	integrase	A0A1P8DJJ6	Virus_Rctr41k	45.5	1.1e-71
AXO47960.1|125331_126036_+|transposase	IS6 family transposase IS15DIV	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
AXO47971.1|126195_127704_+|transposase	IS21-like element ISCfr8 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	32.7	9.9e-26
AXO47961.1|127690_128431_+	AAA family ATPase	NA	U5N3V8	Enterobacteria_phage	41.7	4.4e-43
AXO47962.1|128658_129213_-	aminoglycoside N-acetyltransferase AAC(6')-Ib3	NA	NA	NA	NA	NA
AXO47963.1|129816_130521_+|transposase	IS6 family transposase IS15DIV	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
129276:129388	attR	TGCTGCGTAACATCGTTGCTGCTCCATAACATCAAACATCGACCCACGGCGTAACGCGCTTGCTGCTTGGATGCCCGAGGCATAGACTGTACAAAAAAACAGTCATAACAAGC	NA	NA	NA	NA
AXO47964.1|131010_132120_-	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	NA	E3SJ82	Synechococcus_phage	30.2	2.8e-33
