assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003408535.1_ASM340853v1	CP029332	Mycobacterium avium subsp. hominissuis strain MAC109 chromosome, complete genome	1	51349-51433	1	CRISPRCasFinder	no		c2c9_V-U4,DinG,csa3,cas3,WYL,cas4,DEDDh	Orphan	CGCGCGTTTTACGCGCTCATCGCCCGGGGC	30	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,DinG,csa3,cas3,WYL,cas4,DEDDh	NA,NA|114aa|down_2|CP029332.1_54288_54630_-	NA|461aa|up_9|CP029332.1_42754_44137_-	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases	NA|139aa|up_8|CP029332.1_44230_44647_-	pfam02467, Whib, Transcription factor WhiB	NA|263aa|up_7|CP029332.1_44789_45578_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|276aa|up_6|CP029332.1_45574_46402_+	pfam00877, NLPC_P60, NlpC/P60 family	NA|121aa|up_5|CP029332.1_46450_46813_+	pfam10774, DUF4226, Domain of unknown function (DUF4226)	NA|484aa|up_4|CP029332.1_46928_48380_+	pfam10774, DUF4226, Domain of unknown function (DUF4226)	NA|106aa|up_3|CP029332.1_48430_48748_+	pfam10824, T7SS_ESX_EspC, Excreted virulence factor EspC, type VII ESX diderm	NA|104aa|up_2|CP029332.1_48744_49056_+	pfam10904, DUF2694, Protein of unknown function (DUF2694)	NA|551aa|up_1|CP029332.1_49315_50968_+	pfam18645, DUF5631, Family of unknown function (DUF5631)	NA|106aa|up_0|CP029332.1_51024_51342_+	pfam10921, DUF2710, Protein of unknown function (DUF2710)	NA|424aa|down_0|CP029332.1_52250_53522_-	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|202aa|down_1|CP029332.1_53667_54273_+	PRK00228, PRK00228, YqgE/AlgH family protein	NA|114aa|down_2|CP029332.1_54288_54630_-	NA	NA|355aa|down_3|CP029332.1_54685_55750_-	pfam10738, Lpp-LpqN, Probable lipoprotein LpqN	NA|970aa|down_4|CP029332.1_55934_58844_+	PRK00390, leuS, leucyl-tRNA synthetase; Validated	NA|224aa|down_5|CP029332.1_58850_59522_-	PRK08219, PRK08219, SDR family oxidoreductase	NA|168aa|down_6|CP029332.1_59580_60084_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|249aa|down_7|CP029332.1_60150_60897_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|603aa|down_8|CP029332.1_60893_62702_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|247aa|down_9|CP029332.1_62752_63493_-	COG1802, GntR, Transcriptional regulators [Transcription]
GCA_003408535.1_ASM340853v1	CP029332	Mycobacterium avium subsp. hominissuis strain MAC109 chromosome, complete genome	2	97736-97830	2	CRISPRCasFinder	no		c2c9_V-U4,DinG,csa3,cas3,WYL,cas4,DEDDh	Orphan	CGCAGGCGTCGCCGGCGGTGTTCGGCGGT	29	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,DinG,csa3,cas3,WYL,cas4,DEDDh	NA|157aa|up_6|CP029332.1_86631_87102_+,NA|170aa|up_3|CP029332.1_92844_93354_+,NA|218aa|up_0|CP029332.1_95992_96646_+,NA|127aa|down_5|CP029332.1_109981_110362_-,NA|87aa|down_8|CP029332.1_112383_112644_-	NA|153aa|up_9|CP029332.1_79363_79822_+	PRK00137, rplI, 50S ribosomal protein L9; Reviewed	NA|876aa|up_8|CP029332.1_80353_82981_+	PRK05636, PRK05636, replicative DNA helicase; Provisional	NA|264aa|up_7|CP029332.1_85676_86468_+	pfam01841, Transglut_core, Transglutaminase-like superfamily	NA|157aa|up_6|CP029332.1_86631_87102_+	NA	NA|489aa|up_5|CP029332.1_87220_88687_-	COG5421, COG5421, Transposase [DNA replication, recombination, and repair]	NA|481aa|up_4|CP029332.1_91377_92820_+	TIGR02692, putative_tRNA_nucleotidyltransferase, tRNA adenylyltransferase	NA|170aa|up_3|CP029332.1_92844_93354_+	NA	NA|656aa|up_2|CP029332.1_93400_95368_+	pfam06259, Abhydrolase_8, Alpha/beta hydrolase	NA|110aa|up_1|CP029332.1_95502_95832_+	pfam10817, DUF2563, Protein of unknown function (DUF2563)	NA|218aa|up_0|CP029332.1_95992_96646_+	NA	NA|420aa|down_0|CP029332.1_98031_99291_+	pfam18645, DUF5631, Family of unknown function (DUF5631)	NA|262aa|down_1|CP029332.1_99535_100321_+	PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated	NA|279aa|down_2|CP029332.1_100601_101438_+	COG3953, COG3953, SLT domain proteins [General function prediction only]	NA|496aa|down_3|CP029332.1_101440_102928_+	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|1404aa|down_4|CP029332.1_102931_107143_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|127aa|down_5|CP029332.1_109981_110362_-	NA	NA|407aa|down_6|CP029332.1_110494_111715_+	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|219aa|down_7|CP029332.1_111711_112368_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|87aa|down_8|CP029332.1_112383_112644_-	NA	NA|449aa|down_9|CP029332.1_112828_114175_-	cd08882, RHO_alpha_C_MupW-like, C-terminal catalytic domain of Pseudomonas fluorescens MupW and related aromatic ring hydroxylating dioxygenases
GCA_003408535.1_ASM340853v1	CP029332	Mycobacterium avium subsp. hominissuis strain MAC109 chromosome, complete genome	5	1538899-1538989	5	CRISPRCasFinder	no		c2c9_V-U4,DinG,csa3,cas3,WYL,cas4,DEDDh	Orphan	TGACGCTCGCGGTTGGGCCGGCG	23	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,DinG,csa3,cas3,WYL,cas4,DEDDh	NA,NA|415aa|down_1|CP029332.1_1539858_1541103_-	NA|477aa|up_9|CP029332.1_1527269_1528700_+	PRK05478, PRK05478, 3-isopropylmalate dehydratase large subunit	NA|199aa|up_8|CP029332.1_1528725_1529322_+	PRK01641, leuD, 3-isopropylmalate dehydratase small subunit	NA|213aa|up_7|CP029332.1_1529533_1530172_+	COG0776, HimA, Bacterial nucleoid DNA-binding protein [DNA replication, recombination, and repair]	NA|316aa|up_6|CP029332.1_1530265_1531213_-	cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily	NA|731aa|up_5|CP029332.1_1531297_1533490_-	PRK05443, PRK05443, polyphosphate kinase; Provisional	NA|221aa|up_4|CP029332.1_1533579_1534242_-	TIGR03552, F420_cofC, 2-phospho-L-lactate guanylyltransferase	NA|352aa|up_3|CP029332.1_1534367_1535423_+	PRK00094, gpsA, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA|370aa|up_2|CP029332.1_1535454_1536564_+	PRK01966, ddl, D-alanine--D-alanine ligase	NA|188aa|up_1|CP029332.1_1536560_1537124_-	pfam12028, DUF3515, Protein of unknown function (DUF3515)	NA|316aa|up_0|CP029332.1_1537217_1538165_+	PRK05731, PRK05731, thiamine monophosphate kinase; Provisional	NA|277aa|down_0|CP029332.1_1539025_1539856_-	PRK06180, PRK06180, short chain dehydrogenase; Provisional	NA|415aa|down_1|CP029332.1_1539858_1541103_-	NA	NA|148aa|down_2|CP029332.1_1541225_1541669_-	pfam13577, SnoaL_4, SnoaL-like domain	NA|297aa|down_3|CP029332.1_1541753_1542644_+	PRK06197, PRK06197, short chain dehydrogenase; Provisional	NA|274aa|down_4|CP029332.1_1542655_1543477_+	TIGR03971, short-chain_dehydrogenase/reductase_SDR, SDR family mycofactocin-dependent oxidoreductase	NA|65aa|down_5|CP029332.1_1543490_1543685_-	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed	NA|159aa|down_6|CP029332.1_1544346_1544823_+	cd13402, LT_TF-like, lytic transglycosylase-like domain of tail fiber-like proteins and similar domains	NA|567aa|down_7|CP029332.1_1544937_1546638_+	TIGR03599, YloV, DAK2 domain fusion protein YloV	NA|739aa|down_8|CP029332.1_1546640_1548857_+	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|239aa|down_9|CP029332.1_1548853_1549570_+	pfam07510, DUF1524, Protein of unknown function (DUF1524)
GCA_003408535.1_ASM340853v1	CP029332	Mycobacterium avium subsp. hominissuis strain MAC109 chromosome, complete genome	6	1729789-1729879	6	CRISPRCasFinder	no		c2c9_V-U4,DinG,csa3,cas3,WYL,cas4,DEDDh	Orphan	CGCGCCGCGCGGCGGCGCGCATCGTCGCCGGGC	33	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,DinG,csa3,cas3,WYL,cas4,DEDDh	NA|109aa|up_7|CP029332.1_1723142_1723469_-,NA	NA|508aa|up_9|CP029332.1_1718382_1719906_+	cd17631, FACL_FadD13-like, fatty acyl-CoA synthetase, including FadD13	NA|1076aa|up_8|CP029332.1_1719902_1723130_+	PRK12999, PRK12999, pyruvate carboxylase; Reviewed	NA|109aa|up_7|CP029332.1_1723142_1723469_-	NA	NA|260aa|up_6|CP029332.1_1723588_1724368_+	PRK07231, FabG-like, SDR family oxidoreductase	NA|401aa|up_5|CP029332.1_1724428_1725631_+	cd03784, GT1_Gtf-like, UDP-glycosyltransferases and similar proteins	NA|247aa|up_4|CP029332.1_1725619_1726360_-	pfam01738, DLH, Dienelactone hydrolase family	NA|267aa|up_3|CP029332.1_1726402_1727203_+	PRK01827, thyA, thymidylate synthase; Reviewed	NA|182aa|up_2|CP029332.1_1727199_1727745_+	pfam00186, DHFR_1, Dihydrofolate reductase	NA|245aa|up_1|CP029332.1_1727814_1728549_+	pfam05103, DivIVA, DivIVA protein	NA|403aa|up_0|CP029332.1_1728579_1729788_+	COG3214, COG3214, Uncharacterized protein conserved in bacteria [Function unknown]	NA|251aa|down_0|CP029332.1_1729893_1730646_+	PRK00847, thyX, FAD-dependent thymidylate synthase; Reviewed	NA|301aa|down_1|CP029332.1_1730689_1731592_+	PRK03170, PRK03170, dihydrodipicolinate synthase; Provisional	NA|559aa|down_2|CP029332.1_1731611_1733288_+	COG0595, COG0595, mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]	NA|291aa|down_3|CP029332.1_1733396_1734269_-	TIGR00027, Hypothetical_protein_Rv0893c/MT0917/Mb0917c	NA|277aa|down_4|CP029332.1_1734274_1735105_-	TIGR03971, short-chain_dehydrogenase/reductase_SDR, SDR family mycofactocin-dependent oxidoreductase	NA|105aa|down_5|CP029332.1_1735104_1735419_-	COG1359, COG1359, Uncharacterized conserved protein [Function unknown]	NA|775aa|down_6|CP029332.1_1735785_1738110_+	COG1674, FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning]	NA|181aa|down_7|CP029332.1_1738198_1738741_-	PRK07922, PRK07922, amino-acid N-acetyltransferase	NA|191aa|down_8|CP029332.1_1738806_1739379_+	COG0558, PgsA, Phosphatidylglycerophosphate synthase [Lipid metabolism]	NA|109aa|down_9|CP029332.1_1739506_1739833_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins
GCA_003408535.1_ASM340853v1	CP029332	Mycobacterium avium subsp. hominissuis strain MAC109 chromosome, complete genome	7	2099235-2099344	7	CRISPRCasFinder	no		c2c9_V-U4,DinG,csa3,cas3,WYL,cas4,DEDDh	Orphan	CCTGACTTTTATCACTGTCGGCGATCCGGCGGTTG	35	1	3	2099270-2099309|2099270-2099309|2099270-2099309	CP029332.1_37695-37656|CP029332.1_2101015-2101054|CP029332.1_2102715-2102754	NA	1	1	Orphan	c2c9_V-U4,DinG,csa3,cas3,WYL,cas4,DEDDh	NA|299aa|up_4|CP029332.1_2093661_2094558_-,NA	NA|419aa|up_9|CP029332.1_2087628_2088885_-	COG1819, COG1819, Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]	NA|219aa|up_8|CP029332.1_2089017_2089674_-	pfam13578, Methyltransf_24, Methyltransferase domain	NA|350aa|up_7|CP029332.1_2089691_2090741_-	pfam04230, PS_pyruv_trans, Polysaccharide pyruvyl transferase	NA|341aa|up_6|CP029332.1_2090743_2091766_-	cd04196, GT_2_like_d, Subfamily of Glycosyltransferase Family GT2 of unknown function	NA|369aa|up_5|CP029332.1_2092438_2093545_-	TIGR04371, conserved_hypothetical_protein, putative sugar O-methyltransferase	NA|299aa|up_4|CP029332.1_2093661_2094558_-	NA	NA|341aa|up_3|CP029332.1_2095339_2096362_+	COG1089, Gmd, GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane]	NA|321aa|up_2|CP029332.1_2096370_2097333_+	cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, extended (e) SDRs	NA|236aa|up_1|CP029332.1_2097502_2098210_+	TIGR01444, 2-O-methyltransferase_NoeI, methyltransferase, FkbM family	NA|266aa|up_0|CP029332.1_2098269_2099067_+	cd06433, GT_2_WfgS_like, WfgS and WfeV are involved in O-antigen biosynthesis	NA|489aa|down_0|CP029332.1_2099502_2100969_+	COG5421, COG5421, Transposase [DNA replication, recombination, and repair]	NA|489aa|down_1|CP029332.1_2101202_2102669_+	COG5421, COG5421, Transposase [DNA replication, recombination, and repair]	NA|489aa|down_2|CP029332.1_2102902_2104369_+	COG5421, COG5421, Transposase [DNA replication, recombination, and repair]	NA|231aa|down_3|CP029332.1_2104627_2105320_-	TIGR01248, drrC, daunorubicin resistance protein C	NA|247aa|down_4|CP029332.1_2105418_2106159_-	TIGR00025, Mtu_efflux, ABC transporter efflux protein, DrrB family	NA|316aa|down_5|CP029332.1_2106155_2107103_-	TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit	NA|362aa|down_6|CP029332.1_2107315_2108401_-	pfam13358, DDE_3, DDE superfamily endonuclease	NA|973aa|down_7|CP029332.1_2108444_2111363_-	TIGR00833, Putative_membrane_protein_ActII-3, Transport protein	NA|964aa|down_8|CP029332.1_2111421_2114313_-	TIGR00833, Putative_membrane_protein_ActII-3, Transport protein	NA|140aa|down_9|CP029332.1_2114309_2114729_-	pfam05423, Mycobact_memb, Mycobacterium membrane protein
GCA_003408535.1_ASM340853v1	CP029332	Mycobacterium avium subsp. hominissuis strain MAC109 chromosome, complete genome	9	3147699-3147781	9	CRISPRCasFinder	no	DEDDh	c2c9_V-U4,DinG,csa3,cas3,WYL,cas4,DEDDh	Unclear	GGCCCAAGCTGAATCGCCCGGCTCCT	26	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,DinG,csa3,cas3,WYL,cas4,DEDDh	NA|227aa|up_4|CP029332.1_3142804_3143485_+,NA|298aa|up_3|CP029332.1_3143488_3144382_-,NA|295aa|down_4|CP029332.1_3152548_3153433_-,NA|130aa|down_7|CP029332.1_3155623_3156013_-	NA|425aa|up_9|CP029332.1_3138011_3139286_-	PHA03247, PHA03247, large tegument protein UL36; Provisional	NA|387aa|up_8|CP029332.1_3139285_3140446_-	COG0275, COG0275, Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]	NA|144aa|up_7|CP029332.1_3140420_3140852_-	COG2001, COG2001, Uncharacterized protein conserved in bacteria [Function unknown]	NA|134aa|up_6|CP029332.1_3141288_3141690_-	pfam11239, DUF3040, Protein of unknown function (DUF3040)	NA|201aa|up_5|CP029332.1_3142082_3142685_+	COG0456, RimI, Acetyltransferases [General function prediction only]	NA|227aa|up_4|CP029332.1_3142804_3143485_+	NA	NA|298aa|up_3|CP029332.1_3143488_3144382_-	NA	NA|350aa|up_2|CP029332.1_3144647_3145697_+	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]	NA|506aa|up_1|CP029332.1_3145701_3147219_+	TIGR03459, crt_membr, carotene biosynthesis associated membrane protein	NA|135aa|up_0|CP029332.1_3147212_3147617_-	pfam18367, Rv2175c_C, Rv2175c C-terminal domain of unknown function	NA|397aa|down_0|CP029332.1_3147792_3148983_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|482aa|down_1|CP029332.1_3149117_3150563_+	COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]	NA|463aa|down_2|CP029332.1_3150559_3151948_-	pfam01474, DAHP_synth_2, Class-II DAHP synthetase family	NA|163aa|down_3|CP029332.1_3152039_3152528_-	pfam16473, DUF5051, 3' exoribonuclease, RNase T-like	NA|295aa|down_4|CP029332.1_3152548_3153433_-	NA	NA|430aa|down_5|CP029332.1_3153524_3154814_+	PRK13375, pimE, mannosyltransferase; Provisional	NA|242aa|down_6|CP029332.1_3154810_3155536_-	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like	NA|130aa|down_7|CP029332.1_3155623_3156013_-	NA	NA|427aa|down_8|CP029332.1_3156009_3157290_-	COG0003, ArsA, Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|146aa|down_9|CP029332.1_3157282_3157720_-	cd07819, SRPBCC_2, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins
