assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003403135.1_ASM340313v1	CP031560	Dickeya dianthicola strain ME23 chromosome, complete genome	1	1676883-1678039	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas4,cas7,cas8c,cas5,cas3	csa3,cas8e,RT,cas2,cas1,cas4,cas7,cas8c,cas5,cas3,DinG,DEDDh,cas6f,cas7f,cas5f,cas8f,cas3f	 Type I-U?,Type I-C,Type I-U	GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC,GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC,GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	32,32,32	0	0	NA	NA	I-C:I-C:I-C	17,17,16	17	TypeI-U?,TypeI-C,TypeI-U	csa3,cas8e,RT,cas2,cas1,cas4,cas7,cas8c,cas5,cas3,DinG,DEDDh,cas6f,cas7f,cas5f,cas8f,cas3f	NA|291aa|up_5|CP031560.1_1670337_1671210_-,NA|423aa|up_4|CP031560.1_1671216_1672485_-,NA	NA|241aa|up_9|CP031560.1_1666831_1667554_+	COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|384aa|up_8|CP031560.1_1667550_1668702_+	PRK15446, PRK15446, phosphonate metabolism protein PhnM; Provisional	NA|187aa|up_7|CP031560.1_1668701_1669262_+	PRK10078, PRK10078, ribose 1,5-bisphosphokinase; Provisional	NA|250aa|up_6|CP031560.1_1669294_1670044_+	PRK11244, phnP, carbon-phosphorus lyase complex accessory protein; Provisional	NA|291aa|up_5|CP031560.1_1670337_1671210_-	NA	NA|423aa|up_4|CP031560.1_1671216_1672485_-	NA	NA|287aa|up_3|CP031560.1_1672993_1673854_+	COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|311aa|up_2|CP031560.1_1674015_1674948_+	TIGR03431, PhnD, phosphonate ABC transporter, periplasmic phosphonate binding protein	NA|289aa|up_1|CP031560.1_1675102_1675969_+	TIGR01097, PhnE, phosphonate ABC transporter, permease protein PhnE	NA|300aa|up_0|CP031560.1_1675965_1676865_+	TIGR01097, PhnE, phosphonate ABC transporter, permease protein PhnE	cas2|98aa|down_0|CP031560.1_1678220_1678514_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|342aa|down_1|CP031560.1_1678540_1679566_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|214aa|down_2|CP031560.1_1679546_1680188_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas7|293aa|down_3|CP031560.1_1680191_1681070_-	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas8c|581aa|down_4|CP031560.1_1681066_1682809_-	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas5|221aa|down_5|CP031560.1_1682805_1683468_-	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas3|754aa|down_6|CP031560.1_1683479_1685741_-	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3	NA|475aa|down_7|CP031560.1_1686234_1687659_+	PRK06931, PRK06931, diaminobutyrate--2-oxoglutarate transaminase	NA|705aa|down_8|CP031560.1_1687817_1689932_+	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|624aa|down_9|CP031560.1_1690050_1691922_+	COG4264, RhbC, Siderophore synthetase component [Secondary metabolites biosynthesis, transport, and catabolism]
GCA_003403135.1_ASM340313v1	CP031560	Dickeya dianthicola strain ME23 chromosome, complete genome	4	4025008-4025575	4,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas6f,cas7f,cas5f,cas8f,cas3f,cas1	csa3,cas8e,RT,cas2,cas1,cas4,cas7,cas8c,cas5,cas3,DinG,DEDDh,cas6f,cas7f,cas5f,cas8f,cas3f	Type I-F	TTTCTAAGCTGCCTATGCGGCAGTGAAC,TTTCTAAGCTGCCTATGCGGCAGTGAAC,TTTCTAAGCTGCCTATGCGGCAGTGAAC	28,28,28	0	0	NA	NA	I-F:I-F:I-F	9,9,7	9	TypeI-F	csa3,cas8e,RT,cas2,cas1,cas4,cas7,cas8c,cas5,cas3,DinG,DEDDh,cas6f,cas7f,cas5f,cas8f,cas3f	NA,NA	NA|469aa|up_9|CP031560.1_4013032_4014439_-	pfam00067, p450, Cytochrome P450	NA|334aa|up_8|CP031560.1_4014824_4015826_-	PRK10754, PRK10754, NADPH:quinone reductase	NA|468aa|up_7|CP031560.1_4015946_4017350_+	PRK08006, PRK08006, replicative DNA helicase DnaB	NA|359aa|up_6|CP031560.1_4017440_4018517_+	cd06827, PLPDE_III_AR_proteobact, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases	NA|83aa|up_5|CP031560.1_4018695_4018944_-	pfam07338, DUF1471, Protein of unknown function (DUF1471)	NA|256aa|up_4|CP031560.1_4019187_4019955_-	cd01069, PBP2_PheC, Cyclohexadienyl dehydratase, a member of the type 2 periplasmic binding fold protein superfamily	NA|458aa|up_3|CP031560.1_4020254_4021628_-	PRK10238, PRK10238, aromatic amino acid transporter AroP	NA|159aa|up_2|CP031560.1_4022018_4022495_+	COG1522, Lrp, Transcriptional regulators [Transcription]	NA|205aa|up_1|CP031560.1_4022760_4023375_+	COG1284, COG1284, Uncharacterized conserved protein [Function unknown]	NA|398aa|up_0|CP031560.1_4023416_4024610_+	PRK09257, PRK09257, aromatic amino acid transaminase	cas6f|185aa|down_0|CP031560.1_4025704_4026259_-	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4)	cas7f|336aa|down_1|CP031560.1_4026265_4027273_-	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas5f|318aa|down_2|CP031560.1_4027289_4028243_-	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas8f|446aa|down_3|CP031560.1_4028239_4029577_-	pfam09611, Cas_Csy1, CRISPR-associated protein (Cas_Csy1)	cas3f|1093aa|down_4|CP031560.1_4029591_4032870_-	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas1|334aa|down_5|CP031560.1_4032866_4033868_-	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	NA|563aa|down_6|CP031560.1_4036091_4037780_-	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|537aa|down_7|CP031560.1_4038942_4040553_+	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|944aa|down_8|CP031560.1_4040673_4043505_-	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|183aa|down_9|CP031560.1_4043760_4044309_+	PRK09010, PRK09010, single-stranded DNA-binding protein; Provisional
GCA_003403135.1_ASM340313v1	CP031560	Dickeya dianthicola strain ME23 chromosome, complete genome	5	4034291-4035760	5,3,3	CRISPRCasFinder,CRT,PILER-CR	no	cas6f,cas7f,cas5f,cas8f,cas3f,cas1	csa3,cas8e,RT,cas2,cas1,cas4,cas7,cas8c,cas5,cas3,DinG,DEDDh,cas6f,cas7f,cas5f,cas8f,cas3f	Type I-F	GTTCACTGCCGAGTAGGCAGCTTAGAAA,GTTCACTGCCGAGTAGGCAGCTTAGAAA,TTTCTAAGCTGCCTACTCGGCAGTGAAC	28,28,28	0	0	NA	NA	I-F:I-F:I-F	24,24,21	24	TypeI-F	csa3,cas8e,RT,cas2,cas1,cas4,cas7,cas8c,cas5,cas3,DinG,DEDDh,cas6f,cas7f,cas5f,cas8f,cas3f	NA,NA|163aa|down_6|CP031560.1_4045473_4045962_+,NA|282aa|down_8|CP031560.1_4046838_4047684_+	NA|458aa|up_9|CP031560.1_4020254_4021628_-	PRK10238, PRK10238, aromatic amino acid transporter AroP	NA|159aa|up_8|CP031560.1_4022018_4022495_+	COG1522, Lrp, Transcriptional regulators [Transcription]	NA|205aa|up_7|CP031560.1_4022760_4023375_+	COG1284, COG1284, Uncharacterized conserved protein [Function unknown]	NA|398aa|up_6|CP031560.1_4023416_4024610_+	PRK09257, PRK09257, aromatic amino acid transaminase	cas6f|185aa|up_5|CP031560.1_4025704_4026259_-	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4)	cas7f|336aa|up_4|CP031560.1_4026265_4027273_-	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas5f|318aa|up_3|CP031560.1_4027289_4028243_-	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas8f|446aa|up_2|CP031560.1_4028239_4029577_-	pfam09611, Cas_Csy1, CRISPR-associated protein (Cas_Csy1)	cas3f|1093aa|up_1|CP031560.1_4029591_4032870_-	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas1|334aa|up_0|CP031560.1_4032866_4033868_-	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	NA|563aa|down_0|CP031560.1_4036091_4037780_-	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|537aa|down_1|CP031560.1_4038942_4040553_+	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|944aa|down_2|CP031560.1_4040673_4043505_-	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|183aa|down_3|CP031560.1_4043760_4044309_+	PRK09010, PRK09010, single-stranded DNA-binding protein; Provisional	NA|193aa|down_4|CP031560.1_4044366_4044945_-	smart00903, Flavin_Reduct, Flavin reductase like domain	NA|100aa|down_5|CP031560.1_4044979_4045279_-	cd05250, CC3_like_SDR_a, CC3(TIP30)-like, atypical (a) SDRs	NA|163aa|down_6|CP031560.1_4045473_4045962_+	NA	NA|196aa|down_7|CP031560.1_4046244_4046832_+	pfam14065, DUF4255, Protein of unknown function (DUF4255)	NA|282aa|down_8|CP031560.1_4046838_4047684_+	NA	NA|518aa|down_9|CP031560.1_4047824_4049378_+	COG3497, COG3497, Phage tail sheath protein FI [General function prediction only]
GCA_003403135.1_ASM340313v1	CP031560	Dickeya dianthicola strain ME23 chromosome, complete genome	6	4540841-4540940	6	CRISPRCasFinder	no		csa3,cas8e,RT,cas2,cas1,cas4,cas7,cas8c,cas5,cas3,DinG,DEDDh,cas6f,cas7f,cas5f,cas8f,cas3f	Orphan	CAAAAAATTTCCGGGAGAAATTTTT	25	0	0	NA	NA	NA	1	1	Orphan	csa3,cas8e,RT,cas2,cas1,cas4,cas7,cas8c,cas5,cas3,DinG,DEDDh,cas6f,cas7f,cas5f,cas8f,cas3f	NA|268aa|up_4|CP031560.1_4534551_4535355_+,NA|493aa|up_3|CP031560.1_4536322_4537801_+,NA|249aa|up_2|CP031560.1_4537819_4538566_+,NA	NA|367aa|up_9|CP031560.1_4528998_4530099_-	PRK06598, PRK06598, aspartate-semialdehyde dehydrogenase; Reviewed	NA|198aa|up_8|CP031560.1_4530297_4530891_+	PRK10739, PRK10739, YhgN family NAAT transporter	NA|439aa|up_7|CP031560.1_4530956_4532273_-	PRK14984, PRK14984, gluconate transporter	NA|173aa|up_6|CP031560.1_4532521_4533040_+	COG3265, GntK, Gluconate kinase [Carbohydrate transport and metabolism]	NA|333aa|up_5|CP031560.1_4533050_4534049_-	PRK14987, PRK14987, HTH-type transcriptional regulator GntR	NA|268aa|up_4|CP031560.1_4534551_4535355_+	NA	NA|493aa|up_3|CP031560.1_4536322_4537801_+	NA	NA|249aa|up_2|CP031560.1_4537819_4538566_+	NA	NA|401aa|up_1|CP031560.1_4538621_4539824_-	pfam00872, Transposase_mut, Transposase, Mutator family	NA|233aa|up_0|CP031560.1_4540063_4540762_-	cd02910, cupin_Yhhw_N, Escherichia coli YhhW and YhaK and related proteins, pirin-like bicupin, N-terminal cupin domain	NA|401aa|down_0|CP031560.1_4541383_4542586_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|417aa|down_1|CP031560.1_4542582_4543833_-	PRK05329, PRK05329, glycerol-3-phosphate dehydrogenase subunit GlpB	NA|548aa|down_2|CP031560.1_4543822_4545466_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|450aa|down_3|CP031560.1_4545766_4547116_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|270aa|down_4|CP031560.1_4547308_4548118_-	PRK10976, PRK10976, putative hydrolase; Provisional	NA|331aa|down_5|CP031560.1_4548170_4549163_-	PRK10749, PRK10749, lysophospholipase L2; Provisional	NA|207aa|down_6|CP031560.1_4549297_4549918_+	PRK10520, rhtB, homoserine/homoserine lactone efflux protein; Provisional	NA|208aa|down_7|CP031560.1_4550040_4550664_-	PRK10229, PRK10229, threonine efflux system; Provisional	NA|597aa|down_8|CP031560.1_4550741_4552532_-	PRK11057, PRK11057, ATP-dependent DNA helicase RecQ; Provisional	NA|157aa|down_9|CP031560.1_4552979_4553450_+	PRK11688, PRK11688, thioesterase family protein
