The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP031546	Escherichia coli strain cq9 chromosome, complete genome	5184499	594931	639309	5184499	integrase,protease,tail,plate,holin,portal,capsid	Enterobacteria_phage(89.74%)	53	590693:590709	644318:644334
590693:590709	attL	TCGGTGGCGTTTCTGGT	NA	NA	NA	NA
AXO05406.1|594931_595174_+	DUF4177 domain-containing protein	NA	A0A0A7NPW2	Enterobacteria_phage	100.0	2.5e-40
AXO05407.1|595166_595400_+	membrane protein insertion efficiency factor YidD	NA	NA	NA	NA	NA
AXO05408.1|595529_595670_-	Hok/Gef family protein	NA	A0A0A7NPZ4	Enterobacteria_phage	100.0	7.0e-19
AXO05409.1|595861_596122_-	hypothetical protein	NA	NA	NA	NA	NA
AXO05410.1|596164_597265_-	phage late control D family protein	NA	A0A0A7NQ97	Enterobacteria_phage	100.0	1.2e-206
AXO05411.1|597422_598607_+|tail	phage tail sheath family protein	tail	A0A0A7NV69	Enterobacteria_phage	99.5	5.6e-226
AXO05412.1|598606_599119_+|tail	phage major tail tube protein	tail	A0A0A7NPV8	Enterobacteria_phage	100.0	3.2e-93
AXO05413.1|599173_599539_+|tail	phage tail protein	tail	A0A0A7NPZ0	Enterobacteria_phage	97.5	3.8e-56
AXO05414.1|599466_599703_+|tail	GpE family phage tail protein	tail	A0A0A7NQ96	Enterobacteria_phage	98.0	3.9e-22
AXO05415.1|599689_602497_+|tail	phage tail tape measure protein	tail	A0A0A7NRZ9	Enterobacteria_phage	98.2	0.0e+00
AXO05416.1|602503_602998_+|tail	phage tail protein	tail	A0A0A7NV65	Enterobacteria_phage	98.2	1.8e-85
AXO05417.1|603066_603600_-|tail	tail fiber assembly protein	tail	A0A077SL44	Escherichia_phage	67.2	1.8e-62
AXO05418.1|603602_606194_-|tail	phage tail protein	tail	U5N099	Enterobacteria_phage	52.9	1.0e-163
AXO05419.1|606196_606727_-|tail	phage tail protein I	tail	A0A0A7NPV1	Enterobacteria_phage	99.4	1.1e-93
AXO05420.1|606719_607616_-|plate	baseplate assembly protein	plate	A0A0A7NPY5	Enterobacteria_phage	99.3	5.5e-157
AXO05421.1|608547_609183_-	phage virion morphogenesis protein	NA	A0A0A7NV60	Enterobacteria_phage	100.0	1.1e-114
AXO05422.1|609175_609643_-|tail	phage tail protein	tail	A0A0A7NPU6	Enterobacteria_phage	99.4	1.3e-85
AXO09693.1|609629_609809_-	hypothetical protein	NA	NA	NA	NA	NA
AXO05423.1|609780_610188_-	DUF2570 domain-containing protein	NA	A0A0A7NPY2	Enterobacteria_phage	97.0	3.8e-65
AXO05424.1|610184_610577_-	M15 family peptidase	NA	A0A0A7NQ86	Enterobacteria_phage	100.0	5.8e-71
AXO05425.1|610573_610897_-|holin	holin	holin	A0A0A7NRY9	Enterobacteria_phage	98.1	6.1e-50
AXO05426.1|610899_611100_-|tail	phage tail protein	tail	A0A0A7NV57	Enterobacteria_phage	98.5	6.0e-32
AXO05427.1|611099_611594_-|capsid	capsid assembly protein	capsid	A0A0A7NPU2	Enterobacteria_phage	98.8	6.6e-88
AXO05428.1|612543_613596_-|capsid	phage major capsid protein, P2 family	capsid	A0A0A7NQ82	Enterobacteria_phage	100.0	6.8e-199
AXO05429.1|613618_614455_-|capsid	phage capsid protein	capsid	A0A0A7NRY7	Enterobacteria_phage	100.0	2.7e-150
AXO05430.1|614609_616361_+	oxidoreductase	NA	A0A0A7NV54	Enterobacteria_phage	98.3	0.0e+00
AXO05431.1|616360_617407_+|portal	phage portal protein	portal	A0A0A7NPT9	Enterobacteria_phage	100.0	1.5e-206
AXO05432.1|617897_618422_-	ead/Ea22-like family protein	NA	NA	NA	NA	NA
AXO05433.1|618485_618797_-	chromosome partitioning protein	NA	A0A0A7NPT5	Enterobacteria_phage	93.2	3.2e-48
AXO05434.1|618801_619761_-	recombinase	NA	A0A0A7NPX4	Enterobacteria_phage	99.7	9.9e-181
AXO05435.1|622667_623033_-	hypothetical protein	NA	A0A0A7NRY1	Enterobacteria_phage	95.9	1.1e-60
AXO05436.1|623029_623647_-	hypothetical protein	NA	K7PLX4	Enterobacteria_phage	50.6	1.9e-12
AXO09694.1|623656_624193_-	DNA-binding protein	NA	NA	NA	NA	NA
AXO05437.1|624519_624765_-	MarR family transcriptional regulator	NA	A0A0A7NV47	Enterobacteria_phage	98.8	3.3e-40
AXO05438.1|624761_624965_-	hypothetical protein	NA	A0A0A7NPS8	Enterobacteria_phage	100.0	4.0e-31
AXO05439.1|625161_625404_-	DUF4754 domain-containing protein	NA	A0A0A7NQ71	Enterobacteria_phage	98.8	1.5e-37
AXO05440.1|625415_625694_-	hypothetical protein	NA	A0A0A7NRX5	Enterobacteria_phage	79.3	5.3e-34
AXO05441.1|625704_626055_-	DUF4761 family protein	NA	A0A0A7NV42	Enterobacteria_phage	98.3	7.8e-59
AXO05442.1|626092_626518_-	hypothetical protein	NA	A0A0A7NPS5	Enterobacteria_phage	100.0	9.1e-78
AXO05443.1|626626_626926_+	XRE family transcriptional regulator	NA	A0A0A7NPW3	Enterobacteria_phage	98.9	2.1e-44
AXO09695.1|626992_627988_+|integrase	integrase	integrase	A0A0A7NQ69	Enterobacteria_phage	99.4	1.2e-192
AXO05444.1|628279_628531_+	antitoxin ChpS	NA	NA	NA	NA	NA
AXO05445.1|628524_628875_+	type II toxin-antitoxin system ChpB family toxin	NA	NA	NA	NA	NA
AXO05446.1|628954_629485_-	inorganic pyrophosphatase	NA	A0A2H4J8U1	uncultured_Caudovirales_phage	63.9	9.4e-56
AXO05447.1|629794_630751_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXO05448.1|630829_631039_+	hypothetical protein	NA	NA	NA	NA	NA
AXO05449.1|631060_632563_+	sugar ABC transporter ATP-binding protein	NA	F2Y2R6	Organic_Lake_phycodnavirus	30.3	1.1e-11
AXO05450.1|632573_633599_+	ABC transporter permease	NA	NA	NA	NA	NA
AXO05451.1|633585_634581_+	sugar ABC transporter permease YjfF	NA	NA	NA	NA	NA
AXO05452.1|634613_635612_-	fructose 1,6-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	42.7	5.7e-70
AXO05453.1|635787_637161_+	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase	NA	NA	NA	NA	NA
AXO05454.1|637311_637863_-	ribosome-associated protein	NA	NA	NA	NA	NA
AXO05455.1|637956_639309_+|protease	metalloprotease PmbA	protease	NA	NA	NA	NA
644318:644334	attR	TCGGTGGCGTTTCTGGT	NA	NA	NA	NA
>prophage 2
CP031546	Escherichia coli strain cq9 chromosome, complete genome	5184499	660786	710421	5184499	holin,tRNA,transposase	Escherichia_phage(18.75%)	48	NA	NA
AXO05478.1|660786_663642_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	36.7	1.8e-140
AXO05479.1|663641_664085_-	DNA polymerase III subunit chi	NA	NA	NA	NA	NA
AXO05480.1|664438_665950_-	cytosol aminopeptidase	NA	Q6GYZ8	Mycoplasma_phage	38.0	6.0e-47
AXO05481.1|666216_667317_+	lipopolysaccharide ABC transporter permease LptF	NA	NA	NA	NA	NA
AXO05482.1|667316_668399_+	LPS export ABC transporter permease LptG	NA	NA	NA	NA	NA
AXO05483.1|668559_670062_-	DUF853 domain-containing protein	NA	A0A248XCZ8	Klebsiella_phage	44.2	4.6e-84
AXO05484.1|670139_671138_-	transcriptional regulator	NA	NA	NA	NA	NA
AXO05485.1|671204_672524_-	gluconate permease	NA	NA	NA	NA	NA
AXO05486.1|672586_673351_-	gluconate 5-dehydrogenase	NA	NA	NA	NA	NA
AXO05487.1|673374_674406_-	L-idonate 5-dehydrogenase	NA	NA	NA	NA	NA
AXO05488.1|674622_675186_+	thermosensitive gluconokinase	NA	NA	NA	NA	NA
AXO05489.1|675189_676209_-	aldehyde reductase Ahr	NA	A0A0G2Y405	Acanthamoeba_polyphaga_mimivirus	30.7	1.4e-44
AXO05490.1|676526_676721_+	hypothetical protein	NA	NA	NA	NA	NA
AXO09697.1|676749_677940_+	DUF4102 domain-containing protein	NA	B7SYF8	Stenotrophomonas_phage	40.1	9.4e-72
AXO05491.1|679451_679682_-	hypothetical protein	NA	NA	NA	NA	NA
AXO05492.1|679697_679892_+	hypothetical protein	NA	NA	NA	NA	NA
AXO05493.1|680595_680739_+	hypothetical protein	NA	NA	NA	NA	NA
AXO05494.1|680766_682095_-|transposase	IS4 family transposase IS4	transposase	NA	NA	NA	NA
AXO05495.1|682721_683939_+	MFS transporter	NA	NA	NA	NA	NA
AXO09698.1|683950_685069_+	gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
AXO05496.1|685111_685237_+	hypothetical protein	NA	NA	NA	NA	NA
AXO05497.1|685289_685547_-	hypothetical protein	NA	NA	NA	NA	NA
AXO05498.1|685860_687027_+|transposase	IS3-like element IS911 family transposase	transposase	Q716C2	Shigella_phage	99.3	1.8e-184
AXO05499.1|686962_687376_-	DUF2254 domain-containing protein	NA	NA	NA	NA	NA
AXO05500.1|687335_687494_-|holin	choline transporter	holin	NA	NA	NA	NA
AXO05501.1|687438_689442_-	BCCT family transporter	NA	A0A2I7QNT1	Vibrio_phage	25.9	7.5e-21
AXO05502.1|689589_690746_-|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	45.1	3.6e-68
AXO05503.1|691523_691937_+	hypothetical protein	NA	NA	NA	NA	NA
AXO05504.1|692493_693261_-	Fe(3+) dicitrate transport ATP-binding protein FecE	NA	G3M9Y6	Bacillus_virus	24.8	6.4e-13
AXO05505.1|693261_694218_-	iron-dicitrate ABC transporter permease FecD	NA	A0A2H4IY97	uncultured_Caudovirales_phage	26.1	1.1e-17
AXO05506.1|694214_695213_-	Fe3+ dicitrate ABC transporter permease	NA	NA	NA	NA	NA
AXO05507.1|695209_696112_-	Fe(3+)-dicitrate ABC transporter substrate-binding protein FecB	NA	NA	NA	NA	NA
AXO05508.1|696156_698481_-	fe(3+) dicitrate transporter fecA	NA	NA	NA	NA	NA
AXO05509.1|698567_699521_-	protein FecR	NA	NA	NA	NA	NA
AXO05510.1|699517_700039_-	RNA polymerase sigma factor FecI	NA	NA	NA	NA	NA
AXO05511.1|701555_701744_-	hypothetical protein	NA	NA	NA	NA	NA
AXO05512.1|701788_702046_+	biofilm development YmgB/AriR family protein	NA	NA	NA	NA	NA
AXO05513.1|702208_702418_-	hypothetical protein	NA	A0A0N7BTS3	Escherichia_phage	96.0	5.9e-06
AXO05514.1|702781_704155_+	esterase-like activity of phytase family protein	NA	NA	NA	NA	NA
AXO05515.1|704393_705779_-|transposase	IS66 family transposase	transposase	A0A0P0ZBS5	Stx2-converting_phage	89.3	3.4e-259
AXO05516.1|705828_706176_-	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZBY2	Stx2-converting_phage	100.0	2.2e-61
AXO09699.1|706172_706553_-	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZBP6	Stx2-converting_phage	99.2	7.1e-66
AXO05517.1|706671_706908_-	hypothetical protein	NA	NA	NA	NA	NA
AXO05518.1|706907_707429_-	hypothetical protein	NA	NA	NA	NA	NA
AXO05519.1|707329_707737_-	hypothetical protein	NA	NA	NA	NA	NA
AXO05520.1|707990_708581_-	inovirus Gp2 family protein	NA	NA	NA	NA	NA
AXO05521.1|708619_709402_-	AAA family ATPase	NA	A0A2L1IVB6	Escherichia_phage	100.0	2.0e-139
AXO05522.1|709398_710421_-|transposase	IS21 family transposase IS100	transposase	A0A2L1IVA1	Escherichia_phage	100.0	1.9e-201
>prophage 3
CP031546	Escherichia coli strain cq9 chromosome, complete genome	5184499	1204149	1249171	5184499	plate,transposase	Streptococcus_phage(22.22%)	38	NA	NA
AXO05957.1|1204149_1205481_-|plate	type VI secretion system baseplate subunit TssK	plate	NA	NA	NA	NA
AXO05958.1|1205483_1206008_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA	NA
AXO05959.1|1206004_1207285_-	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA	NA
AXO05960.1|1207309_1208392_-|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
AXO05961.1|1208355_1210206_-|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
AXO05962.1|1210209_1210623_-|plate	type VI secretion system baseplate subunit TssE	plate	NA	NA	NA	NA
AXO05963.1|1210629_1212105_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA	NA
AXO05964.1|1212155_1212380_-	hypothetical protein	NA	NA	NA	NA	NA
AXO05965.1|1212414_1212915_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA	NA
AXO05966.1|1213612_1214131_+	Hcp family type VI secretion system effector	NA	NA	NA	NA	NA
AXO05967.1|1214163_1214301_+	hypothetical protein	NA	NA	NA	NA	NA
AXO05968.1|1214340_1216482_+	type VI secretion system tip protein VgrG	NA	A0A077K8Q4	Ralstonia_phage	25.0	1.1e-25
AXO05969.1|1216557_1220811_+	RHS repeat family protein	NA	A0A2H4JHK7	uncultured_Caudovirales_phage	44.2	3.2e-21
AXO05970.1|1220822_1221272_+	hypothetical protein	NA	NA	NA	NA	NA
AXO05971.1|1222710_1223481_-	amidohydrolase	NA	NA	NA	NA	NA
AXO05972.1|1223634_1224108_+	inhibitor of vertebrate lysozyme	NA	NA	NA	NA	NA
AXO05973.1|1224150_1226595_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AXO05974.1|1226834_1227413_+	phosphoheptose isomerase	NA	A0A067XQR2	Caulobacter_phage	32.0	1.1e-14
AXO05975.1|1227618_1228386_+	class II glutamine amidotransferase	NA	NA	NA	NA	NA
AXO05976.1|1228356_1229097_-	transpeptidase	NA	NA	NA	NA	NA
AXO05977.1|1229388_1230147_+	peptidoglycan endopeptidase	NA	A0A1V0DZX6	Clostridioides_phage	37.7	2.6e-19
AXO05978.1|1230322_1230820_+|transposase	transposase	transposase	NA	NA	NA	NA
AXO05979.1|1231137_1232877_-	flagellar type III secretion system protein FlhA	NA	NA	NA	NA	NA
AXO09719.1|1232818_1233607_+	putative lateral flagellar export/assembly protein LafU	NA	NA	NA	NA	NA
AXO05980.1|1233677_1234733_+	DNA polymerase IV	NA	NA	NA	NA	NA
AXO05981.1|1234729_1235182_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AXO05982.1|1235274_1235463_-	hypothetical protein	NA	NA	NA	NA	NA
AXO05983.1|1235488_1235755_+	hypothetical protein	NA	NA	NA	NA	NA
AXO05984.1|1236111_1237569_-	cytosol nonspecific dipeptidase	NA	NA	NA	NA	NA
AXO05985.1|1237829_1238288_+	xanthine phosphoribosyltransferase	NA	NA	NA	NA	NA
AXO05986.1|1238379_1239624_+	esterase	NA	NA	NA	NA	NA
AXO05987.1|1239681_1240083_+	sigma factor-binding protein Crl	NA	NA	NA	NA	NA
AXO05988.1|1240121_1241177_-	phosphoporin PhoE	NA	Q1MVN1	Enterobacteria_phage	60.1	1.2e-115
AXO05989.1|1241464_1242568_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	40.4	1.1e-61
AXO05990.1|1242579_1243833_+	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	47.0	1.7e-95
AXO05991.1|1245332_1245872_-	recombinase family protein	NA	Q2A092	Sodalis_phage	43.8	1.1e-27
AXO05992.1|1247724_1247913_+	hypothetical protein	NA	NA	NA	NA	NA
AXO09720.1|1248196_1249171_-|transposase	IS30-like element ISApl1 family transposase	transposase	W5R8L2	Staphylococcus_phage	39.1	2.3e-52
>prophage 4
CP031546	Escherichia coli strain cq9 chromosome, complete genome	5184499	2339088	2394306	5184499	tail,plate,holin,lysis,tRNA,terminase	Escherichia_phage(82.26%)	73	NA	NA
AXO09760.1|2339088_2340321_-	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	39.5	3.1e-17
AXO07002.1|2340575_2341559_+	zinc transporter ZntB	NA	NA	NA	NA	NA
AXO07003.1|2341833_2342007_+	hypothetical protein	NA	NA	NA	NA	NA
AXO07004.1|2342036_2343410_+	ATP-dependent RNA helicase DbpA	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	33.1	6.6e-53
AXO07005.1|2343538_2344474_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	100.0	2.8e-148
AXO07006.1|2344525_2345761_-	DUF3596 domain-containing protein	NA	A0A0U2JGI6	Escherichia_phage	99.5	1.1e-240
AXO07007.1|2345762_2345978_-	hypothetical protein	NA	A0A0U2RY08	Escherichia_phage	100.0	1.8e-37
AXO07008.1|2346077_2346266_-	DUF1187 family protein	NA	A0A0U2QL97	Escherichia_phage	100.0	1.9e-27
AXO07009.1|2346258_2346453_-	restriction alleviation protein, Lar family	NA	A0A0U2QQP4	Escherichia_phage	100.0	9.0e-33
AXO07010.1|2346516_2347569_-	enterohemolysin	NA	A0A0U2S5Y9	Escherichia_phage	63.6	8.5e-117
AXO07011.1|2347580_2350703_-	exodeoxyribonuclease VIII	NA	A0A0U2I1R6	Escherichia_phage	93.9	0.0e+00
AXO07012.1|2350804_2351080_-	hypothetical protein	NA	A0A0U2QW85	Escherichia_phage	100.0	5.0e-45
AXO07013.1|2351154_2351355_-	hypothetical protein	NA	A0A0U2SHB5	Escherichia_phage	86.8	3.7e-21
AXO07014.1|2351284_2351521_-	DUF1482 family protein	NA	NA	NA	NA	NA
AXO07015.1|2351441_2351651_-	host cell division inhibitory peptide Kil	NA	NA	NA	NA	NA
AXO07016.1|2351669_2351942_-	hypothetical protein	NA	NA	NA	NA	NA
AXO07017.1|2352364_2352517_-	DUF1391 domain-containing protein	NA	M4QQ57	Salicola_phage	55.3	3.5e-08
AXO07018.1|2352528_2352663_-	hypothetical protein	NA	NA	NA	NA	NA
AXO07019.1|2352898_2353363_-	helix-turn-helix domain-containing protein	NA	A0A0U2QW76	Escherichia_phage	70.2	1.2e-54
AXO07020.1|2353467_2353743_+	helix-turn-helix domain-containing protein	NA	A0A0U2S629	Escherichia_phage	65.9	1.4e-23
AXO07021.1|2353726_2354149_+	hypothetical protein	NA	A0A0U2RXZ9	Escherichia_phage	94.3	3.4e-69
AXO07022.1|2354226_2355357_+	hypothetical protein	NA	G9L6A8	Escherichia_phage	65.7	8.7e-43
AXO07023.1|2355363_2356110_+	DNA replication protein DnaC	NA	V5UQI5	Shigella_phage	81.3	4.3e-115
AXO07024.1|2356130_2356874_+	DUF1627 domain-containing protein	NA	A0A0U2SAW4	Escherichia_phage	83.0	9.9e-104
AXO07025.1|2356860_2357361_+	hypothetical protein	NA	G9L663	Escherichia_phage	65.9	1.2e-36
AXO07026.1|2357804_2358164_+	hypothetical protein	NA	A0A076GCN9	Escherichia_phage	73.8	4.3e-36
AXO07027.1|2358164_2358380_+	hypothetical protein	NA	A0A222YWK2	Escherichia_phage	94.4	2.2e-35
AXO07028.1|2358381_2358600_+	DUF4014 domain-containing protein	NA	A0A1I9LJM2	Stx_converting_phage	90.3	1.4e-29
AXO07029.1|2358601_2359147_+	hypothetical protein	NA	A0A2I6PID2	Escherichia_phage	56.6	9.7e-24
AXO07030.1|2359381_2359594_+	Hok/Gef family protein	NA	A0A0U2QV81	Escherichia_phage	92.9	8.1e-27
AXO07031.1|2359568_2359784_-	hypothetical protein	NA	NA	NA	NA	NA
AXO07032.1|2360107_2360707_+	DUF1367 family protein	NA	A0A0U2RT94	Escherichia_phage	92.5	3.5e-107
AXO07033.1|2360706_2360997_+	DUF1364 domain-containing protein	NA	A0A0U2KD41	Escherichia_phage	89.6	4.3e-47
AXO07034.1|2360993_2361536_+	DUF1133 family protein	NA	A0A0U2S606	Escherichia_phage	74.6	1.6e-74
AXO07035.1|2361923_2362649_+	pertussis toxin-like subunit ArtA	NA	A0A0U2KD26	Escherichia_phage	66.0	7.5e-80
AXO09761.1|2362716_2363142_+	subtilase cytotoxin subunit B-like protein	NA	NA	NA	NA	NA
AXO07036.1|2363199_2363592_+|holin	holin	holin	Q9MBZ5	Enterobacteria_phage	89.2	5.7e-50
AXO09762.1|2363581_2363857_+|holin	phage holin family protein	holin	A0A0U2SHD1	Escherichia_phage	94.5	9.8e-41
AXO07037.1|2363859_2364237_+	M15 family peptidase	NA	Q9MBZ3	Enterobacteria_phage	97.6	5.1e-64
AXO07038.1|2364448_2365018_+	hypothetical protein	NA	A0A0N7KZV8	Escherichia_phage	94.7	1.9e-99
AXO09763.1|2365169_2365637_+|lysis	lysis protein	lysis	A0A0H4IT10	Shigella_phage	84.4	4.8e-64
AXO07039.1|2366134_2366344_+	hypothetical protein	NA	NA	NA	NA	NA
AXO07040.1|2366347_2367439_+|terminase	terminase small subunit	terminase	A0A0U2RXW9	Escherichia_phage	90.8	5.3e-146
AXO07041.1|2367428_2368757_+|terminase	terminase	terminase	A0A0U2JTW9	Escherichia_phage	99.8	3.4e-264
AXO07042.1|2368775_2370212_+	DUF1073 domain-containing protein	NA	A0A0U2S5X9	Escherichia_phage	99.4	8.8e-274
AXO09764.1|2370270_2370990_+	hypothetical protein	NA	A0A0U2I1R8	Escherichia_phage	98.3	3.6e-135
AXO07043.1|2370970_2372293_+	DUF2213 domain-containing protein	NA	A0A0U2QW61	Escherichia_phage	95.7	4.7e-189
AXO07044.1|2372285_2372903_+	hypothetical protein	NA	A0A0U2S600	Escherichia_phage	98.0	9.4e-116
AXO07045.1|2372917_2373946_+	hypothetical protein	NA	A0A0U2QQI2	Escherichia_phage	99.7	1.9e-190
AXO07046.1|2374003_2374474_+	hypothetical protein	NA	A0A0U2SAX6	Escherichia_phage	98.1	2.7e-83
AXO07047.1|2374473_2374914_+	hypothetical protein	NA	A0A0U2S646	Escherichia_phage	99.3	1.2e-77
AXO07048.1|2374910_2375351_+	hypothetical protein	NA	A0A0U2RTA8	Escherichia_phage	97.9	2.8e-82
AXO07049.1|2375337_2376282_+	hypothetical protein	NA	A0A0U2SH76	Escherichia_phage	98.7	1.4e-171
AXO07050.1|2376281_2377619_+	hypothetical protein	NA	A0A0U2KD19	Escherichia_phage	96.4	3.6e-245
AXO07051.1|2377642_2378074_+	hypothetical protein	NA	A0A0U2S616	Escherichia_phage	100.0	3.3e-75
AXO07052.1|2378070_2378688_+	hypothetical protein	NA	A0A0U2S634	Escherichia_phage	87.8	4.5e-94
AXO07053.1|2378752_2380813_+	lytic transglycosylase domain-containing protein	NA	A0A0U2QV45	Escherichia_phage	42.8	1.9e-128
AXO07054.1|2380816_2381485_+	hypothetical protein	NA	A0A0U2JGI7	Escherichia_phage	98.2	4.7e-121
AXO07055.1|2381481_2381748_+	hypothetical protein	NA	A0A0U2JGJ3	Escherichia_phage	98.9	1.7e-45
AXO07056.1|2381747_2382755_+	hypothetical protein	NA	A0A0U2QL72	Escherichia_phage	91.3	3.6e-181
AXO07057.1|2382754_2383468_+|plate	phage baseplate protein	plate	A0A0U2JTX5	Escherichia_phage	97.0	3.0e-126
AXO07058.1|2383718_2384066_+	hypothetical protein	NA	A0A0U2I1S2	Escherichia_phage	100.0	1.5e-62
AXO07059.1|2384041_2384602_-	phage antirepressor Ant	NA	A0A0U2QL80	Escherichia_phage	84.9	1.0e-84
AXO07060.1|2384585_2384927_+	hypothetical protein	NA	NA	NA	NA	NA
AXO07061.1|2384938_2385685_+	hypothetical protein	NA	NA	NA	NA	NA
AXO07062.1|2385727_2386954_+	hypothetical protein	NA	A0A0U2RJZ0	Escherichia_phage	98.8	4.4e-226
AXO07063.1|2386937_2387564_+	hypothetical protein	NA	A0A0U2RK03	Escherichia_phage	99.5	5.8e-121
AXO07064.1|2387560_2388916_+|tail	phage tail protein	tail	A0A0U2SAV1	Escherichia_phage	84.7	2.2e-218
AXO07065.1|2388918_2389464_+|tail	tail fiber assembly protein	tail	Q8W612	Enterobacteria_phage	75.8	2.9e-76
AXO07066.1|2389487_2391491_+|tail	phage tail protein	tail	A0A0U2SH60	Escherichia_phage	59.7	5.5e-242
AXO07067.1|2391490_2392054_+	DUF4376 domain-containing protein	NA	A0A0U2QQK4	Escherichia_phage	96.8	7.8e-101
AXO07068.1|2392597_2393032_-	universal stress protein UspF	NA	A0A1W6JNV4	Morganella_phage	52.8	1.4e-28
AXO07069.1|2393172_2394306_-	phosphoporin PhoE	NA	Q1MVN1	Enterobacteria_phage	58.8	8.3e-118
>prophage 5
CP031546	Escherichia coli strain cq9 chromosome, complete genome	5184499	2601349	2654786	5184499	tail,transposase,portal,capsid,lysis,head,terminase	Enterobacteria_phage(36.17%)	71	NA	NA
AXO07244.1|2601349_2601925_-|tail	tail fiber assembly protein	tail	K7PMH7	Enterobacteria_phage	95.3	6.5e-103
AXO07245.1|2601924_2604885_-	hypothetical protein	NA	A0A0K2FIZ6	Escherichia_phage	53.5	4.2e-52
AXO07246.1|2604949_2605549_-	Ail/Lom family protein	NA	H6WZM8	Escherichia_phage	92.5	2.3e-103
AXO07247.1|2609155_2609797_-|tail	tail assembly protein	tail	A5LH42	Enterobacteria_phage	86.5	2.9e-96
AXO07248.1|2609694_2610438_-|tail	phage tail protein	tail	K7PLW1	Enterobacteria_phage	94.3	4.4e-144
AXO07249.1|2610443_2611142_-|tail	phage minor tail protein L	tail	A0A0K2FJ01	Enterobacteria_phage	98.7	2.1e-132
AXO07250.1|2611141_2611471_-|tail	phage tail protein	tail	A0A2R9YJM0	Escherichia_phage	96.3	1.8e-57
AXO07251.1|2611467_2614029_-|tail	phage tail tape measure protein	tail	A0A0K2FI43	Enterobacteria_phage	95.1	0.0e+00
AXO07252.1|2614021_2614456_-|tail	phage tail assembly protein T	tail	A0A0K2FJB3	Enterobacteria_phage	100.0	6.9e-65
AXO07253.1|2614437_2614860_-|tail	phage minor tail protein G	tail	A0A0K2FIQ8	Enterobacteria_phage	85.7	2.2e-60
AXO09771.1|2614875_2615616_-|tail	phage tail protein	tail	A0A0K2FJ05	Enterobacteria_phage	97.2	5.2e-129
AXO07254.1|2615623_2616019_-|tail	phage tail protein	tail	A0A2R9YJI2	Escherichia_phage	98.5	8.5e-70
AXO07255.1|2616015_2616594_-|tail	phage tail protein	tail	A0A2R9YJK4	Escherichia_phage	99.5	5.9e-80
AXO07256.1|2616605_2616959_-|tail	phage tail protein	tail	A0A2R9YJJ5	Escherichia_phage	97.4	6.4e-61
AXO07257.1|2616970_2617366_-	DNA-packaging protein FI	NA	A0A2R9YJP4	Escherichia_phage	95.5	1.1e-58
AXO07258.1|2617407_2618433_-|capsid	minor capsid protein E	capsid	C6ZCY2	Enterobacteria_phage	98.2	2.8e-189
AXO07259.1|2618488_2618821_-|head	head decoration protein	head	A0A2R9YJN3	Escherichia_phage	98.2	2.5e-54
AXO07260.1|2618830_2620150_-	S49 family peptidase	NA	A0A2I6TC87	Escherichia_phage	98.4	4.0e-233
AXO07261.1|2620130_2621732_-|portal	phage portal protein	portal	A0A0K2FJC0	Enterobacteria_phage	99.4	1.3e-310
AXO07262.1|2621728_2621935_-|head,tail	Lambda prophage-derived head-to-tail joining protein W	head,tail	A0A2R9YJL2	Escherichia_phage	100.0	5.8e-30
AXO07263.1|2621931_2623857_-|terminase	phage terminase large subunit family protein	terminase	A0A0K2FJ14	Enterobacteria_phage	99.4	0.0e+00
AXO07264.1|2623831_2624377_-|terminase	terminase small subunit	terminase	A0A0K2FIG2	Enterobacteria_phage	98.9	1.8e-94
AXO07265.1|2624516_2624618_-	hypothetical protein	NA	NA	NA	NA	NA
AXO07266.1|2624765_2624999_+	DUF3950 domain-containing protein	NA	A0A0K2FIR8	Escherichia_phage	84.1	2.5e-21
AXO07267.1|2625617_2625791_-	protein GnsB	NA	NA	NA	NA	NA
AXO07268.1|2625962_2626235_-	hypothetical protein	NA	NA	NA	NA	NA
AXO07269.1|2626265_2626454_-	cold-shock protein	NA	NA	NA	NA	NA
AXO07270.1|2626464_2626677_-	cold-shock protein CspI	NA	A0A1W6JNX5	Morganella_phage	74.3	1.2e-22
AXO07271.1|2627039_2627537_-	DUF2514 domain-containing protein	NA	A0A291LBG9	Klebsiella_phage	29.5	2.9e-06
AXO07272.1|2627533_2628067_-	lysozyme from lambdoid prophage Qin	NA	K7PLY1	Enterobacteria_phage	93.2	6.4e-97
AXO07273.1|2628063_2628375_-	DUF1327 domain-containing protein	NA	K7PGU6	Enterobacteria_phage	64.6	2.0e-26
AXO07274.1|2628379_2628595_-|lysis	lysis protein S	lysis	A5LH82	Enterobacteria_phage	94.4	1.1e-31
AXO07275.1|2629348_2629564_-	cold-shock protein CspB	NA	A0A1W6JNX5	Morganella_phage	76.5	3.4e-25
AXO07276.1|2629864_2630077_+	cold-shock protein CspF	NA	NA	NA	NA	NA
AXO07277.1|2630498_2631251_-	antitermination protein Q	NA	A0A192Y5X6	Salmonella_phage	92.8	7.1e-134
AXO07278.1|2631264_2632314_-	DUF968 domain-containing protein	NA	A0A291AWV9	Escherichia_phage	57.3	1.3e-112
AXO07279.1|2632315_2632594_-	hypothetical protein	NA	NA	NA	NA	NA
AXO07280.1|2632660_2632912_-	hypothetical protein	NA	NA	NA	NA	NA
AXO07281.1|2633128_2633284_-	protein HokD	NA	A0A0U2QV81	Escherichia_phage	96.1	1.5e-17
AXO07282.1|2633355_2633643_-	mRNA interferase RelE	NA	A0A2H4JBF4	uncultured_Caudovirales_phage	66.0	1.4e-29
AXO07283.1|2633642_2633882_-	antitoxin RelB	NA	A0A2H4JBG1	uncultured_Caudovirales_phage	54.4	1.6e-18
AXO07284.1|2633906_2634212_+	hypothetical protein	NA	NA	NA	NA	NA
AXO07285.1|2634414_2634747_+	protein FlxA	NA	NA	NA	NA	NA
AXO07286.1|2635016_2635139_-	plasmid mobilization protein	NA	NA	NA	NA	NA
AXO07287.1|2635183_2636497_-|transposase	ISNCY family transposase	transposase	NA	NA	NA	NA
AXO07288.1|2636674_2636857_+	hypothetical protein	NA	Q7Y2Q9	Escherichia_phage	74.5	6.3e-12
AXO07289.1|2636831_2637011_-	hypothetical protein	NA	NA	NA	NA	NA
AXO07290.1|2638163_2638520_-	class I SAM-dependent methyltransferase	NA	H9C170	Pectobacterium_phage	69.6	1.6e-38
AXO07291.1|2638516_2638939_-	DUF977 family protein	NA	A0A0U2QQN3	Escherichia_phage	92.0	4.4e-64
AXO07292.1|2638979_2639999_-	hypothetical protein	NA	U5P0A0	Shigella_phage	60.2	2.4e-55
AXO07293.1|2639925_2640447_-	hypothetical protein	NA	NA	NA	NA	NA
AXO07294.1|2640430_2640661_-	division inhibition gene dicB repressor	NA	NA	NA	NA	NA
AXO07295.1|2640744_2641152_+	transcriptional regulator	NA	K7PM82	Enterobacteria_phage	54.7	4.4e-13
AXO07296.1|2641318_2641474_+	DUF1391 domain-containing protein	NA	M4QQ57	Salicola_phage	53.2	3.0e-07
AXO07297.1|2641433_2641604_+	hypothetical protein	NA	NA	NA	NA	NA
AXO07298.1|2641633_2641852_+	hypothetical protein	NA	NA	NA	NA	NA
AXO07299.1|2642419_2642608_+	division inhibition protein DicB	NA	NA	NA	NA	NA
AXO07300.1|2642604_2642796_+	DUF1482 family protein	NA	NA	NA	NA	NA
AXO07301.1|2642888_2645360_+	exonuclease	NA	A0A192Y6E0	Salmonella_phage	56.7	8.5e-59
AXO07302.1|2645432_2645684_+	DNA-binding protein	NA	S4TND0	Salmonella_phage	50.0	2.2e-15
AXO07303.1|2645703_2646999_+	DUF3596 domain-containing protein	NA	B6DZ48	Enterobacteria_phage	62.1	3.3e-155
AXO07304.1|2647018_2647129_-	transporter	NA	NA	NA	NA	NA
AXO07305.1|2647186_2648206_-	starvation-sensing protein RspB	NA	E3SJ82	Synechococcus_phage	25.9	9.7e-17
AXO07306.1|2648217_2649432_-	starvation-sensing protein RspA	NA	Q6A202	Oenococcus_phage	29.0	1.4e-46
AXO07307.1|2649412_2649601_-	hypothetical protein	NA	NA	NA	NA	NA
AXO07308.1|2649637_2649964_-	YnfA family protein	NA	A0A218MNG8	uncultured_virus	55.6	9.9e-24
AXO07309.1|2650098_2650440_+	DUF1283 family protein	NA	NA	NA	NA	NA
AXO07310.1|2650474_2651035_+	spermidine N1-acetyltransferase	NA	NA	NA	NA	NA
AXO07311.1|2651037_2651748_-	YnfC family lipoprotein	NA	NA	NA	NA	NA
AXO07312.1|2651855_2652161_+	DUF1161 domain-containing protein	NA	NA	NA	NA	NA
AXO07313.1|2652359_2654786_+	dimethyl sulfoxide reductase subunit A	NA	A0A077SK27	Escherichia_phage	49.0	7.7e-214
>prophage 6
CP031546	Escherichia coli strain cq9 chromosome, complete genome	5184499	3231922	3241363	5184499		Enterobacteria_phage(85.71%)	10	NA	NA
AXO07852.1|3231922_3233059_+	VWA domain-containing protein	NA	Q9EYF7	Enterobacteria_phage	97.7	1.1e-162
AXO07853.1|3233055_3235056_+	hypothetical protein	NA	Q9EYF6	Enterobacteria_phage	96.1	0.0e+00
AXO07854.1|3235180_3235642_+	DUF1307 domain-containing protein	NA	Q9EYF5	Enterobacteria_phage	100.0	1.9e-76
AXO07855.1|3235681_3236152_-	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	100.0	5.2e-82
AXO07856.1|3236198_3236918_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AXO07857.1|3236914_3238600_-	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	99.6	2.5e-304
AXO07858.1|3238821_3239553_+	transcriptional regulator	NA	Q9EYF2	Enterobacteria_phage	99.5	9.7e-112
AXO07859.1|3239612_3239720_+	protein YohO	NA	NA	NA	NA	NA
AXO07860.1|3239700_3240432_-	ABC transporter permease	NA	NA	NA	NA	NA
AXO07861.1|3240436_3241363_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.8	1.7e-23
>prophage 7
CP031546	Escherichia coli strain cq9 chromosome, complete genome	5184499	3719519	3808274	5184499	integrase,tail,plate,holin,portal,tRNA,capsid,head,terminase	Enterobacteria_phage(53.7%)	104	3763320:3763349	3806864:3806893
AXO08292.1|3719519_3720257_-|tRNA	tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase	tRNA	NA	NA	NA	NA
AXO08293.1|3720388_3721723_+	ATP-dependent RNA helicase SrmB	NA	E3T5E1	Cafeteria_roenbergensis_virus	30.8	2.9e-45
AXO08294.1|3721931_3722813_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXO08295.1|3722915_3723503_+	cysteine/O-acetylserine efflux protein	NA	NA	NA	NA	NA
AXO08296.1|3723558_3723942_-	autonomous glycyl radical cofactor GrcA	NA	Q7Y524	Enterobacteria_phage	72.0	1.4e-32
AXO08297.1|3724246_3724936_+	uracil-DNA glycosylase	NA	A0A172DS90	Canid_alphaherpesvirus	48.8	7.1e-56
AXO08298.1|3724983_3726021_-	methyltransferase	NA	NA	NA	NA	NA
AXO08299.1|3726010_3726214_-	hypothetical protein	NA	NA	NA	NA	NA
AXO08300.1|3726227_3726647_+	thiol disulfide reductase thioredoxin	NA	A0A0K2FIM3	Achromobacter_phage	38.5	2.8e-15
AXO09813.1|3726715_3727414_+	DTW domain-containing protein	NA	NA	NA	NA	NA
AXO08301.1|3727445_3730106_+	protein lysine acetyltransferase	NA	NA	NA	NA	NA
AXO08302.1|3730219_3731575_+	phosphatidylserine synthase	NA	NA	NA	NA	NA
AXO08303.1|3731620_3731944_+	YfiM family lipoprotein	NA	NA	NA	NA	NA
AXO08304.1|3731940_3733239_-	alpha-ketoglutarate permease	NA	Q6JIH2	Burkholderia_virus	32.2	1.3e-45
AXO08305.1|3733220_3733334_-	alpha-ketoglutarate permease	NA	NA	NA	NA	NA
AXO08306.1|3739102_3741676_-	ATP-dependent chaperone ClpB	NA	H6X3M6	Enterobacteria_phage	35.5	7.6e-127
AXO08307.1|3741805_3742537_-	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
AXO08308.1|3742533_3743514_-	ribosomal large subunit pseudouridine synthase D	NA	NA	NA	NA	NA
AXO08309.1|3743648_3744386_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
AXO08310.1|3744415_3744622_+	hypothetical protein	NA	NA	NA	NA	NA
AXO08311.1|3744656_3744998_+	ribosome-associated inhibitor A	NA	NA	NA	NA	NA
AXO09814.1|3745101_3745149_+	hypothetical protein	NA	NA	NA	NA	NA
AXO08312.1|3745247_3746408_+	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA	NA
AXO08313.1|3746450_3747572_-	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA	NA
AXO08314.1|3747582_3748653_-	3-deoxy-7-phosphoheptulonate synthase AroF	NA	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	51.2	4.0e-90
AXO08315.1|3748862_3749228_+	DUF2799 domain-containing protein	NA	NA	NA	NA	NA
AXO08316.1|3749377_3749896_+	DUF4154 domain-containing protein	NA	NA	NA	NA	NA
AXO08317.1|3749885_3751112_+	diguanylate cyclase	NA	NA	NA	NA	NA
AXO08318.1|3751127_3751610_+	OmpA family protein	NA	NA	NA	NA	NA
AXO08319.1|3751685_3752033_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
AXO08320.1|3752074_3752842_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
AXO08321.1|3752872_3753421_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
AXO08322.1|3753439_3753688_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
AXO08323.1|3753824_3755186_-	signal recognition particle protein	NA	NA	NA	NA	NA
AXO09815.1|3755352_3756144_+	inner membrane protein YpjD	NA	NA	NA	NA	NA
AXO09816.1|3756209_3757451_+	DUF21 domain-containing protein	NA	NA	NA	NA	NA
AXO08324.1|3757505_3758099_-	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
AXO08325.1|3758095_3758290_-	molecular chaperone GrpE	NA	NA	NA	NA	NA
AXO08326.1|3758221_3759100_+	NAD(+) kinase	NA	NA	NA	NA	NA
AXO08327.1|3759185_3760847_+	DNA repair protein RecN	NA	NA	NA	NA	NA
AXO08328.1|3760995_3761337_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA	NA
AXO08329.1|3761398_3761689_-	RnfH family protein	NA	NA	NA	NA	NA
AXO08330.1|3761678_3762155_-	ubiquinone-binding protein	NA	NA	NA	NA	NA
AXO08331.1|3762286_3762769_+	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	46.8	4.0e-29
3763320:3763349	attL	CGGGTTCAACTCCCGCCAGCTCCACCACTT	NA	NA	NA	NA
AXO08332.1|3763544_3764108_-	DUF4376 domain-containing protein	NA	A0A0U2QQK4	Escherichia_phage	96.2	3.3e-99
AXO08333.1|3764107_3766111_-|tail	phage tail protein	tail	A0A0U2SH60	Escherichia_phage	58.0	1.6e-228
AXO08334.1|3766136_3767225_-	late control protein	NA	R9TNM7	Vibrio_phage	29.7	1.3e-32
AXO08335.1|3767215_3767434_-|tail	phage tail protein	tail	A0A077K8R0	Ralstonia_phage	49.3	3.2e-10
AXO08336.1|3767408_3767897_-|tail	phage tail protein	tail	A0A2H4J875	uncultured_Caudovirales_phage	34.1	1.1e-13
AXO08337.1|3767899_3769552_-	hypothetical protein	NA	R9TRP8	Vibrio_phage	31.4	5.4e-41
AXO08338.1|3769669_3769972_-|tail	phage tail assembly protein	tail	NA	NA	NA	NA
AXO08339.1|3770030_3770549_-|tail	phage tail protein	tail	NA	NA	NA	NA
AXO08340.1|3770545_3772021_-|tail	phage tail protein	tail	R9TMQ0	Vibrio_phage	38.5	5.1e-75
AXO08341.1|3772075_3772618_-|tail	tail fiber assembly protein	tail	Q8W612	Enterobacteria_phage	70.9	8.1e-71
AXO08342.1|3772620_3773850_-|tail	phage tail protein	tail	Q8W613	Enterobacteria_phage	82.1	4.5e-109
AXO08343.1|3773846_3774437_-|tail	phage tail protein I	tail	A0A193GYD1	Enterobacter_phage	38.5	4.7e-24
AXO08344.1|3774429_3775344_-|plate	baseplate assembly protein	plate	D5LGZ3	Escherichia_phage	43.2	2.2e-60
AXO08345.1|3775318_3775675_-|plate	baseplate assembly protein	plate	V5YTB2	Pseudomonas_phage	46.8	2.8e-19
AXO08346.1|3775708_3776332_-|plate	phage baseplate assembly protein V	plate	F1BUP5	Erwinia_phage	29.8	1.4e-10
AXO09817.1|3776315_3776867_-	hypothetical protein	NA	NA	NA	NA	NA
AXO08347.1|3776878_3777601_-	hypothetical protein	NA	NA	NA	NA	NA
AXO08348.1|3777986_3778352_-	DNA breaking-rejoining protein	NA	NA	NA	NA	NA
AXO08349.1|3778402_3779431_-|capsid	minor capsid protein E	capsid	C6ZCY2	Enterobacteria_phage	58.9	5.8e-110
AXO08350.1|3779500_3779836_-|head	head decoration protein	head	A0A2R9YJN3	Escherichia_phage	52.3	1.1e-20
AXO09818.1|3781481_3783005_-|portal	phage portal protein	portal	E4WL21	Enterobacteria_phage	63.6	1.2e-183
AXO08351.1|3783049_3783259_-|tail	phage tail protein	tail	K7PM10	Enterobacteria_phage	49.2	1.4e-10
AXO08352.1|3783262_3785179_-|terminase	phage terminase large subunit family protein	terminase	O64317	Escherichia_phage	64.6	1.9e-252
AXO08353.1|3785150_3785699_-|terminase	terminase small subunit	terminase	A0A0U2S671	Escherichia_phage	87.1	1.1e-59
AXO08354.1|3786029_3786227_+	hypothetical protein	NA	NA	NA	NA	NA
AXO08355.1|3786325_3786622_-	hypothetical protein	NA	Q8W634	Enterobacteria_phage	98.0	5.6e-50
AXO08356.1|3787227_3787509_-	hypothetical protein	NA	NA	NA	NA	NA
AXO08357.1|3787579_3787957_-	M15 family peptidase	NA	Q9MBZ3	Enterobacteria_phage	96.8	3.9e-64
AXO08358.1|3787959_3788235_-|holin	phage holin family protein	holin	Q9MBZ4	Enterobacteria_phage	98.9	8.6e-45
AXO08359.1|3788224_3788617_-|holin	holin	holin	Q9MBZ5	Enterobacteria_phage	90.0	3.7e-49
AXO08360.1|3788787_3788985_+	hypothetical protein	NA	Q9MBZ6	Enterobacteria_phage	100.0	2.5e-30
AXO08361.1|3789035_3789299_-	Shiga toxin Stx2e subunit B	NA	Q9MBZ7	Enterobacteria_phage	100.0	2.9e-42
AXO08362.1|3789311_3790271_-	Shiga toxin Stx2 subunit A	NA	Q9MBZ8	Enterobacteria_phage	99.4	7.6e-173
AXO08363.1|3790655_3791714_-	site-specific DNA-methyltransferase	NA	Q8W637	Enterobacteria_phage	98.9	6.8e-207
AXO08364.1|3791864_3792062_-	TrmB family transcriptional regulator	NA	Q9MC00	Enterobacteria_phage	100.0	2.1e-29
AXO08365.1|3792322_3793375_+	hypothetical protein	NA	NA	NA	NA	NA
AXO08366.1|3793375_3793768_+	hypothetical protein	NA	NA	NA	NA	NA
AXO08367.1|3793764_3794430_+	hypothetical protein	NA	NA	NA	NA	NA
AXO08368.1|3794460_3794808_-	antitermination protein	NA	A0A0P0ZCW0	Stx2-converting_phage	90.9	1.9e-57
AXO09819.1|3794807_3795050_-	hypothetical protein	NA	Q8W639	Enterobacteria_phage	98.8	9.2e-35
AXO08369.1|3795061_3796453_-	replicative DNA helicase	NA	Q8W640	Enterobacteria_phage	97.8	1.3e-261
AXO08370.1|3796449_3797340_-	AAA family ATPase	NA	Q8W641	Enterobacteria_phage	64.5	9.5e-85
AXO08371.1|3797359_3798337_-	replication protein	NA	Q8W642	Enterobacteria_phage	97.6	1.3e-42
AXO08372.1|3798333_3798633_-	transcriptional regulator	NA	NA	NA	NA	NA
AXO08373.1|3798629_3798854_-	hypothetical protein	NA	NA	NA	NA	NA
AXO08374.1|3798850_3799513_-	hypothetical protein	NA	Q8W643	Enterobacteria_phage	88.8	2.6e-103
AXO09820.1|3799625_3800333_-	DNA-binding protein	NA	Q8W645	Enterobacteria_phage	98.3	6.1e-127
AXO08375.1|3800452_3800704_+	bssS family protein	NA	NA	NA	NA	NA
AXO08376.1|3800788_3800998_-	hypothetical protein	NA	Q8W647	Enterobacteria_phage	94.0	3.1e-31
AXO08377.1|3801109_3801766_+	helix-turn-helix domain-containing protein	NA	Q8W648	Enterobacteria_phage	99.5	2.8e-126
AXO08378.1|3801869_3802400_+	helix-turn-helix domain-containing protein	NA	Q8W649	Enterobacteria_phage	97.0	2.2e-65
AXO08379.1|3802596_3802785_+	hypothetical protein	NA	Q8W652	Enterobacteria_phage	100.0	4.5e-29
AXO08380.1|3802781_3803363_+	hypothetical protein	NA	Q8W653	Enterobacteria_phage	87.6	1.5e-99
AXO08381.1|3803539_3803728_+	hypothetical protein	NA	NA	NA	NA	NA
AXO08382.1|3803724_3804552_+	SPFH/Band 7/PHB domain protein	NA	Q8W654	Enterobacteria_phage	98.9	4.0e-130
AXO08383.1|3804993_3805236_+	DUF4222 domain-containing protein	NA	Q8W656	Enterobacteria_phage	100.0	6.8e-38
AXO08384.1|3805239_3805386_+	hypothetical protein	NA	A0A1B5FPC2	Escherichia_phage	93.8	5.4e-22
AXO08385.1|3805394_3805604_+	excisionase	NA	I6PBM8	Cronobacter_phage	86.8	1.6e-30
AXO08386.1|3805558_3806731_+|integrase	site-specific integrase	integrase	I6PDJ1	Cronobacter_phage	87.9	2.2e-198
AXO08387.1|3807074_3808274_+	DUF4102 domain-containing protein	NA	A0A1B5FPC6	Escherichia_phage	50.1	7.7e-106
3806864:3806893	attR	CGGGTTCAACTCCCGCCAGCTCCACCACTT	NA	NA	NA	NA
>prophage 8
CP031546	Escherichia coli strain cq9 chromosome, complete genome	5184499	3811442	3881444	5184499	integrase,transposase	Enterobacteria_phage(42.86%)	52	3817954:3817972	3835988:3836006
AXO08392.1|3811442_3812015_-	Polarity suppression protein	NA	Q7M2A1	Enterobacteria_phage	96.2	1.4e-94
AXO08393.1|3812088_3812589_-	transactivation protein	NA	NA	NA	NA	NA
AXO08394.1|3812585_3813320_-	glycoprotein 3	NA	Q7M2A2	Enterobacteria_phage	98.4	5.2e-129
AXO08395.1|3813559_3813757_+	hypothetical protein	NA	NA	NA	NA	NA
AXO08396.1|3813872_3814139_+	AlpA family transcriptional regulator	NA	Q7M299	Enterobacteria_phage	97.7	1.4e-44
AXO08397.1|3814135_3814726_+	host cell division inhibitor Icd-like protein	NA	Q7M2A7	Enterobacteria_phage	100.0	8.8e-71
AXO08398.1|3814718_3815006_+	Derepression protein	NA	Q7M2A0	Enterobacteria_phage	98.9	5.1e-48
AXO08399.1|3814998_3815454_+	hypothetical protein	NA	Q7M298	Enterobacteria_phage	100.0	7.2e-65
AXO08400.1|3815589_3815910_+	hypothetical protein	NA	NA	NA	NA	NA
AXO08401.1|3815924_3818258_+	DNA primase	NA	Q7M2A8	Enterobacteria_phage	98.8	0.0e+00
3817954:3817972	attL	ATTTTATCGGCTATCTGGA	NA	NA	NA	NA
AXO08402.1|3818481_3818619_+|integrase	attP region and P4int integrase	integrase	NA	NA	NA	NA
AXO08403.1|3822515_3822734_-	DNA invertase	NA	A0A1S6L009	Salmonella_phage	70.0	2.7e-09
AXO08404.1|3823089_3824463_-	hypothetical protein	NA	NA	NA	NA	NA
AXO08405.1|3824607_3824805_+	hypothetical protein	NA	NA	NA	NA	NA
AXO08406.1|3824978_3825263_-	hypothetical protein	NA	NA	NA	NA	NA
AXO08407.1|3825457_3826774_+|integrase	site-specific integrase	integrase	A0A248SL35	Klebsiella_phage	28.6	3.0e-34
AXO08408.1|3826903_3827500_+	hypothetical protein	NA	A0A1B0VBK8	Salmonella_phage	87.4	2.1e-96
AXO08409.1|3827586_3829203_-	hypothetical protein	NA	NA	NA	NA	NA
AXO08410.1|3829910_3830138_+	AlpA family phage regulatory protein	NA	NA	NA	NA	NA
AXO08411.1|3830243_3830471_+	DUF3987 domain-containing protein	NA	NA	NA	NA	NA
AXO08412.1|3830719_3832153_+	DUF3987 domain-containing protein	NA	NA	NA	NA	NA
AXO08413.1|3832420_3833992_-|transposase	IS66 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	58.5	4.2e-168
AXO08414.1|3834011_3834359_-	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZDM8	Stx2-converting_phage	77.6	5.2e-47
AXO08415.1|3834358_3835009_-	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZCV4	Stx2-converting_phage	41.9	1.4e-16
AXO08416.1|3835722_3836286_+	inovirus Gp2 family protein	NA	NA	NA	NA	NA
3835988:3836006	attR	ATTTTATCGGCTATCTGGA	NA	NA	NA	NA
AXO08417.1|3839012_3840122_-	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	35.0	3.3e-26
AXO08418.1|3840478_3841711_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
AXO08419.1|3841773_3843081_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
AXO08420.1|3843091_3843943_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
AXO08421.1|3843947_3845150_+	galactosidase	NA	NA	NA	NA	NA
AXO08422.1|3845181_3847239_+	beta-galactosidase	NA	NA	NA	NA	NA
AXO08423.1|3847302_3847617_+	PTS sugar transporter	NA	NA	NA	NA	NA
AXO08424.1|3847753_3849025_-	maltoporin	NA	NA	NA	NA	NA
AXO08425.1|3849295_3850366_+	LacI family DNA-binding transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	42.5	3.0e-69
AXO08426.1|3851094_3852126_-|transposase	IS3 family transposase	transposase	Q9ZXG3	Shigella_phage	94.6	4.3e-166
AXO08427.1|3852506_3853517_+	LacI family DNA-binding transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	28.3	5.1e-18
AXO08428.1|3853610_3855737_+	alpha-galactosidase	NA	NA	NA	NA	NA
AXO08429.1|3855791_3857069_+	MFS transporter	NA	NA	NA	NA	NA
AXO08430.1|3857065_3858496_+	glycoside hydrolase family 32 protein	NA	NA	NA	NA	NA
AXO08431.1|3858559_3859075_+	PTS glucose transporter subunit IIA	NA	NA	NA	NA	NA
AXO08432.1|3859080_3859284_+	DUF2913 family protein	NA	NA	NA	NA	NA
AXO08433.1|3859300_3859657_+	DUF2913 family protein	NA	NA	NA	NA	NA
AXO08434.1|3859686_3860613_+	aminoimidazole riboside kinase	NA	NA	NA	NA	NA
AXO08435.1|3860712_3862209_+	carbohydrate porin	NA	NA	NA	NA	NA
AXO08436.1|3864024_3864396_-	hypothetical protein	NA	NA	NA	NA	NA
AXO08437.1|3864689_3866213_+	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	31.6	1.4e-43
AXO08438.1|3866972_3872708_-	DUF4011 domain-containing protein	NA	NA	NA	NA	NA
AXO08439.1|3872894_3874937_-	DUF262 domain-containing protein	NA	NA	NA	NA	NA
AXO08440.1|3874929_3876381_-	DUF262 domain-containing protein	NA	NA	NA	NA	NA
AXO08441.1|3877076_3877859_-	AAA family ATPase	NA	A0A2L1IVB6	Escherichia_phage	99.2	3.8e-138
AXO08442.1|3877855_3878878_-|transposase	IS21 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	98.8	3.9e-199
AXO08443.1|3880171_3881444_+|transposase	IS3 family transposase	transposase	Q9ZXG3	Shigella_phage	95.3	4.7e-170
>prophage 9
CP031546	Escherichia coli strain cq9 chromosome, complete genome	5184499	3970841	3984024	5184499		Escherichia_phage(50.0%)	12	NA	NA
AXO08526.1|3970841_3973403_+	DNA mismatch repair protein MutS	NA	E3T5Q7	Cafeteria_roenbergensis_virus	20.6	1.7e-30
AXO08527.1|3973508_3974165_+	protein-serine/threonine phosphatase	NA	A0A222YWF0	Escherichia_phage	46.3	8.0e-49
AXO08528.1|3974215_3974983_-	DeoR/GlpR transcriptional regulator	NA	A0A077SK06	Escherichia_phage	56.7	3.3e-70
AXO08529.1|3975178_3976087_+	NAD(P)-dependent oxidoreductase	NA	A0A077SLF7	Escherichia_phage	76.9	3.0e-118
AXO08530.1|3976083_3977346_+	four-carbon acid sugar kinase family protein	NA	A0A077SLJ7	Escherichia_phage	61.2	3.7e-135
AXO08531.1|3977342_3977981_+	aldolase	NA	A0A077SK32	Escherichia_phage	75.0	1.4e-82
AXO08532.1|3977985_3978762_+	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
AXO08533.1|3978850_3980215_+	GntP family transporter	NA	NA	NA	NA	NA
AXO08534.1|3980308_3981301_-	RNA polymerase sigma factor RpoS	NA	G8CLC7	Synechococcus_phage	37.6	6.1e-32
AXO08535.1|3981363_3982503_-	murein hydrolase activator NlpD	NA	D7RWE0	Brochothrix_phage	35.6	1.7e-06
AXO08536.1|3982642_3983269_-	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	49.7	5.7e-36
AXO08537.1|3983262_3984024_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	48.0	3.4e-59
>prophage 10
CP031546	Escherichia coli strain cq9 chromosome, complete genome	5184499	4278702	4289984	5184499	transposase	Stx2-converting_phage(42.86%)	10	NA	NA
AXO08808.1|4278702_4282116_-	DUF4145 domain-containing protein	NA	Q6NDX2	Leptospira_phage	26.2	8.5e-17
AXO08809.1|4282399_4282597_+	hypothetical protein	NA	NA	NA	NA	NA
AXO08810.1|4283540_4283804_-	hypothetical protein	NA	A0A1L2CUJ8	Pectobacterium_phage	71.6	1.0e-26
AXO08811.1|4284096_4285668_-|transposase	IS66 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	58.7	9.9e-170
AXO08812.1|4285687_4286035_-	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZDM8	Stx2-converting_phage	76.6	2.6e-46
AXO08813.1|4286034_4286712_-	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZCV4	Stx2-converting_phage	46.0	3.3e-21
AXO08814.1|4286673_4286778_+	copper resistance protein	NA	NA	NA	NA	NA
AXO08815.1|4286977_4288060_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A075BTZ7	Microcystis_phage	38.6	5.5e-10
AXO08816.1|4288062_4289007_-	hypothetical protein	NA	NA	NA	NA	NA
AXO08817.1|4289003_4289984_-	thymidylate synthase	NA	A0A218MLB7	uncultured_virus	34.2	7.3e-22
>prophage 11
CP031546	Escherichia coli strain cq9 chromosome, complete genome	5184499	5052529	5074324	5184499	integrase,holin	Morganella_phage(33.33%)	28	5045586:5045600	5067798:5067812
5045586:5045600	attL	GGCTCAACAGCTACC	NA	NA	NA	NA
AXO09552.1|5052529_5053489_-	RNA-directed DNA polymerase	NA	E5E3S8	Burkholderia_phage	28.0	5.7e-11
AXO09553.1|5053786_5054428_-	orotate phosphoribosyltransferase	NA	NA	NA	NA	NA
AXO09554.1|5054493_5055210_-	ribonuclease PH	NA	NA	NA	NA	NA
AXO09555.1|5055141_5055324_+	hypothetical protein	NA	NA	NA	NA	NA
AXO09556.1|5055336_5056200_+	YicC family protein	NA	NA	NA	NA	NA
AXO09557.1|5056388_5057648_+|integrase	site-specific integrase	integrase	A0A1W6JPG6	Morganella_phage	78.1	3.0e-193
AXO09558.1|5057743_5058709_+	hypothetical protein	NA	A0A1W6JPD1	Morganella_phage	51.2	3.0e-07
AXO09559.1|5058823_5059027_+	AlpA family phage regulatory protein	NA	NA	NA	NA	NA
AXO09560.1|5059026_5059458_+	hypothetical protein	NA	A0A1W6JPH9	Morganella_phage	49.7	3.9e-28
AXO09561.1|5059470_5060304_+	antA/AntB antirepressor family protein	NA	G9L6G1	Escherichia_phage	47.5	5.3e-21
AXO09562.1|5060296_5060479_+	DUF4222 domain-containing protein	NA	NA	NA	NA	NA
AXO09563.1|5060472_5061540_+	ash family protein	NA	A0A1C9IHV9	Salmonella_phage	37.2	7.5e-12
AXO09564.1|5061532_5061727_+	hypothetical protein	NA	NA	NA	NA	NA
AXO09565.1|5061723_5061987_+|holin	nicotinic acetylcholine receptor subunit beta	holin	NA	NA	NA	NA
AXO09566.1|5061983_5062205_+	hypothetical protein	NA	NA	NA	NA	NA
AXO09567.1|5062197_5062800_+	hypothetical protein	NA	A0A286S1S7	Klebsiella_phage	36.3	2.6e-25
AXO09568.1|5062810_5063152_+	hypothetical protein	NA	A0A1B5FPL8	Escherichia_phage	61.5	2.5e-33
AXO09569.1|5063144_5063516_+	hypothetical protein	NA	NA	NA	NA	NA
AXO09570.1|5063502_5066259_+	DUF927 domain-containing protein	NA	A0A1W6JPG0	Morganella_phage	57.0	3.4e-298
AXO09571.1|5066325_5066577_+	hypothetical protein	NA	NA	NA	NA	NA
AXO09572.1|5067021_5067483_+	DUF2824 family protein	NA	Q2A0B3	Sodalis_phage	72.2	2.9e-61
AXO09573.1|5067476_5068154_+	DNA transfer protein	NA	Q2A0B2	Sodalis_phage	71.6	7.0e-56
5067798:5067812	attR	GGCTCAACAGCTACC	NA	NA	NA	NA
AXO09574.1|5068153_5069575_+	acyltransferase	NA	B6SCW4	Bacteriophage	53.0	3.7e-123
AXO09575.1|5069574_5071680_+	injection protein	NA	A0A2I7QQN9	Vibrio_phage	37.1	7.2e-91
AXO09865.1|5071698_5072088_-	hypothetical protein	NA	NA	NA	NA	NA
AXO09576.1|5073000_5073483_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A142KB62	Gordonia_phage	43.9	1.5e-28
AXO09577.1|5073486_5073864_+	hypothetical protein	NA	NA	NA	NA	NA
AXO09578.1|5073880_5074324_-	hypothetical protein	NA	A0A1W6JPI4	Morganella_phage	66.4	4.8e-45
>prophage 12
CP031546	Escherichia coli strain cq9 chromosome, complete genome	5184499	5102461	5109408	5184499	transposase	Stx2-converting_phage(85.71%)	8	NA	NA
AXO09866.1|5102461_5103349_-	WYL domain-containing protein	NA	A0A0R6PH67	Moraxella_phage	27.7	6.6e-30
AXO09597.1|5103454_5104132_+|transposase	transposase	transposase	A0A0P0ZCV4	Stx2-converting_phage	47.2	7.3e-21
AXO09598.1|5104131_5104479_+	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZDM8	Stx2-converting_phage	76.6	2.6e-46
AXO09599.1|5104498_5106070_+|transposase	IS66 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	58.7	3.8e-169
AXO09600.1|5106398_5106626_+	DUF4222 domain-containing protein	NA	NA	NA	NA	NA
AXO09601.1|5106819_5107470_+	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZCV4	Stx2-converting_phage	41.9	1.4e-16
AXO09602.1|5107469_5107817_+	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZDM8	Stx2-converting_phage	77.6	5.2e-47
AXO09603.1|5107836_5109408_+|transposase	IS66 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	58.5	4.2e-168
>prophage 1
CP031548	Escherichia coli strain cq9 plasmid unnamed2, complete sequence	221041	0	113282	221041	transposase	Stx2-converting_phage(37.5%)	112	NA	NA
AXO10113.1|323_1049_+|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	51.6	8.9e-65
AXO10114.1|1078_2650_-|transposase	IS66 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	58.7	9.9e-170
AXO10115.1|2669_3017_-	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZDM8	Stx2-converting_phage	76.6	2.6e-46
AXO10116.1|3112_3694_-|transposase	transposase	transposase	A0A0P0ZCV4	Stx2-converting_phage	48.4	8.8e-15
AXO10117.1|3670_3790_+	copper resistance protein	NA	NA	NA	NA	NA
AXO10118.1|3777_3894_+	hypothetical protein	NA	NA	NA	NA	NA
AXO10119.1|3935_4100_-	heat-stable enterotoxin ST-IA/ST-P domain protein	NA	NA	NA	NA	NA
AXO10120.1|4083_4302_-	ST-Ia family heat-stable enterotoxin	NA	NA	NA	NA	NA
AXO10121.1|5529_5895_+|transposase	transposase	transposase	NA	NA	NA	NA
AXO10122.1|5894_7082_+|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
AXO10123.1|9095_9311_+	heat-stable enterotoxin ST-II	NA	NA	NA	NA	NA
AXO10124.1|11796_12162_+|transposase	transposase	transposase	NA	NA	NA	NA
AXO10125.1|12161_13349_+|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
AXO10126.1|13625_13991_+|transposase	transposase	transposase	NA	NA	NA	NA
AXO10127.1|13990_15178_+|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
AXO10128.1|18788_19301_+	toxin-activating lysine-acyltransferase	NA	NA	NA	NA	NA
AXO10129.1|19312_22387_+	RTX toxin hemolysin A	NA	NA	NA	NA	NA
AXO10130.1|22458_24582_+	alpha-hemolysin translocation ATP-binding protein HlyB	NA	W8CYL7	Bacillus_phage	29.9	1.7e-47
AXO10131.1|24600_26037_+	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA	NA
AXO10322.1|27826_28333_+	thiol peroxidase	NA	NA	NA	NA	NA
AXO10132.1|28552_28813_-	EAL domain-containing protein	NA	NA	NA	NA	NA
AXO10133.1|29288_30104_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AXO10134.1|31121_32024_-	F18 fimbrial adhesin subunit FedF	NA	NA	NA	NA	NA
AXO10135.1|32321_32861_-	F18 fimbrial subunit FedE	NA	NA	NA	NA	NA
AXO10323.1|32823_33507_-	F18 fimbrial chaperone FedD	NA	NA	NA	NA	NA
AXO10136.1|33508_35923_-	F18 fimbrial usher protein FedC	NA	NA	NA	NA	NA
AXO10324.1|36015_36531_-	F18 fimbrial major subunit FedA	NA	NA	NA	NA	NA
AXO10137.1|37945_38206_-	hypothetical protein	NA	NA	NA	NA	NA
AXO10138.1|38224_38590_+|transposase	transposase	transposase	NA	NA	NA	NA
AXO10139.1|38589_39777_+|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
AXO10140.1|40257_41094_-	RepB family plasmid replication initiator protein	NA	NA	NA	NA	NA
AXO10141.1|42327_42579_+	plasmid stabilization protein	NA	NA	NA	NA	NA
AXO10142.1|42568_42850_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A2H4JBF4	uncultured_Caudovirales_phage	62.4	3.8e-24
AXO10143.1|42995_43319_+	hypothetical protein	NA	A0A0K1LL53	Rhodobacter_phage	46.1	7.0e-14
AXO10144.1|43363_43609_+	hypothetical protein	NA	NA	NA	NA	NA
AXO10145.1|43598_43814_+	hypothetical protein	NA	NA	NA	NA	NA
AXO10146.1|44202_45390_-|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
AXO10147.1|45389_45755_-|transposase	transposase	transposase	NA	NA	NA	NA
AXO10148.1|46032_47220_-|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
AXO10149.1|47219_47585_-|transposase	transposase	transposase	NA	NA	NA	NA
AXO10150.1|47861_49094_-|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
AXO10151.1|49048_49414_-|transposase	transposase	transposase	NA	NA	NA	NA
AXO10152.1|51046_51310_+	hypothetical protein	NA	NA	NA	NA	NA
AXO10153.1|51607_51904_+	hypothetical protein	NA	NA	NA	NA	NA
AXO10154.1|53242_53716_+	hypothetical protein	NA	NA	NA	NA	NA
AXO10155.1|54138_54504_+|transposase	transposase	transposase	NA	NA	NA	NA
AXO10156.1|54503_55691_+|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
AXO10157.1|55967_56333_+|transposase	transposase	transposase	NA	NA	NA	NA
AXO10158.1|56332_57520_+|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
AXO10159.1|57796_58162_+|transposase	transposase	transposase	NA	NA	NA	NA
AXO10160.1|58161_59349_+|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
AXO10161.1|59829_60666_-	RepB family plasmid replication initiator protein	NA	NA	NA	NA	NA
AXO10162.1|61899_62151_+	plasmid stabilization protein	NA	NA	NA	NA	NA
AXO10163.1|62140_62422_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A2H4JBF4	uncultured_Caudovirales_phage	62.4	3.8e-24
AXO10164.1|62567_62891_+	hypothetical protein	NA	A0A0K1LL53	Rhodobacter_phage	46.1	7.0e-14
AXO10165.1|62935_63181_+	hypothetical protein	NA	NA	NA	NA	NA
AXO10166.1|63170_63386_+	hypothetical protein	NA	NA	NA	NA	NA
AXO10167.1|63774_64962_-|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
AXO10168.1|64961_65327_-|transposase	transposase	transposase	NA	NA	NA	NA
AXO10169.1|65603_66791_-|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
AXO10170.1|66790_67156_-|transposase	transposase	transposase	NA	NA	NA	NA
AXO10171.1|67433_68621_-|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
AXO10172.1|68620_68986_-|transposase	transposase	transposase	NA	NA	NA	NA
AXO10173.1|70618_70882_+	hypothetical protein	NA	NA	NA	NA	NA
AXO10174.1|71179_71476_+	hypothetical protein	NA	NA	NA	NA	NA
AXO10175.1|72814_73288_+	hypothetical protein	NA	NA	NA	NA	NA
AXO10176.1|73710_74076_+|transposase	transposase	transposase	NA	NA	NA	NA
AXO10177.1|74075_75263_+|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
AXO10178.1|75539_75905_+|transposase	transposase	transposase	NA	NA	NA	NA
AXO10179.1|75904_77092_+|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
AXO10180.1|77368_77734_+|transposase	transposase	transposase	NA	NA	NA	NA
AXO10181.1|77733_78921_+|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
AXO10182.1|79203_79479_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
AXO10183.1|79478_79763_-	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA	NA
AXO10184.1|80672_81542_-	incFII family plasmid replication initiator RepA	NA	NA	NA	NA	NA
AXO10325.1|81522_81597_-	positive regulator of RepFIC repA1 expression	NA	NA	NA	NA	NA
AXO10326.1|81685_81790_+	replication protein RepA	NA	NA	NA	NA	NA
AXO10185.1|81833_82088_-	replication regulatory protein repA2	NA	NA	NA	NA	NA
AXO10327.1|82352_82583_-	hypothetical protein	NA	NA	NA	NA	NA
AXO10186.1|82746_83346_-	hypothetical protein	NA	NA	NA	NA	NA
AXO10187.1|83732_83933_-	hypothetical protein	NA	NA	NA	NA	NA
AXO10188.1|84064_84625_-	fertility inhibition protein FinO	NA	NA	NA	NA	NA
AXO10189.1|84679_85423_-	type-F conjugative transfer system pilin acetylase TraX	NA	A0A077JBM8	Xanthomonas_phage	30.5	2.4e-09
AXO10190.1|85442_90713_-	conjugative transfer relaxase/helicase TraI	NA	NA	NA	NA	NA
AXO10191.1|90712_92902_-	type IV conjugative transfer system coupling protein TraD	NA	NA	NA	NA	NA
AXO10192.1|92952_93756_-	hypothetical protein	NA	NA	NA	NA	NA
AXO10193.1|93892_94627_-	complement resistance protein TraT	NA	NA	NA	NA	NA
AXO10194.1|94656_95154_-	entry exclusion protein	NA	NA	NA	NA	NA
AXO10195.1|95172_97992_-	conjugal transfer protein TraG	NA	NA	NA	NA	NA
AXO10196.1|97988_99362_-	conjugal transfer protein TraH	NA	NA	NA	NA	NA
AXO10197.1|99348_99774_-	conjugal transfer protein TrbF	NA	NA	NA	NA	NA
AXO10198.1|99727_100102_-	conjugal transfer protein TrbJ	NA	NA	NA	NA	NA
AXO10199.1|99998_100544_-	type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB	NA	NA	NA	NA	NA
AXO10200.1|100530_100815_-	type-F conjugative transfer system pilin chaperone TraQ	NA	NA	NA	NA	NA
AXO10201.1|100895_101210_+	toxin ArtA	NA	NA	NA	NA	NA
AXO10202.1|101211_101559_-	conjugal transfer protein TrbA	NA	NA	NA	NA	NA
AXO10203.1|101574_102348_-	type-F conjugative transfer system pilin assembly protein TraF	NA	NA	NA	NA	NA
AXO10204.1|102310_102571_-	conjugal transfer protein TrbE	NA	NA	NA	NA	NA
AXO10205.1|102594_103995_-	type-F conjugative transfer system mating-pair stabilization protein TraN	NA	NA	NA	NA	NA
AXO10206.1|104041_105613_-|transposase	IS66 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	58.5	4.2e-168
AXO10207.1|105632_105980_-	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZDM8	Stx2-converting_phage	77.6	5.2e-47
AXO10208.1|105979_106630_-	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZBP6	Stx2-converting_phage	43.1	1.4e-16
AXO10209.1|106747_106987_-	hypothetical protein	NA	NA	NA	NA	NA
AXO10328.1|107005_107164_-	type I toxin-antitoxin system hok family toxin	NA	NA	NA	NA	NA
AXO10210.1|108575_109010_-	conjugation system SOS inhibitor PsiB	NA	NA	NA	NA	NA
AXO10211.1|109064_111023_-	ParB/RepB/Spo0J family partition protein	NA	G8DH78	Emiliania_huxleyi_virus	29.7	6.2e-20
AXO10212.1|111086_111320_-	DUF905 domain-containing protein	NA	NA	NA	NA	NA
AXO10213.1|111375_111906_-	single-stranded DNA-binding protein	NA	A0A0A0P1Q9	Enterobacteria_phage	78.1	1.0e-46
AXO10214.1|111931_112138_-	single-stranded DNA-binding protein	NA	NA	NA	NA	NA
AXO10215.1|112165_112633_+	hypothetical protein	NA	NA	NA	NA	NA
AXO10216.1|112613_112808_+	hypothetical protein	NA	NA	NA	NA	NA
AXO10217.1|112718_113282_-	class I SAM-dependent methyltransferase	NA	A0A2I7RQ20	Vibrio_phage	39.3	2.3e-20
>prophage 2
CP031548	Escherichia coli strain cq9 plasmid unnamed2, complete sequence	221041	118167	118515	221041		Stx2-converting_phage(100.0%)	1	NA	NA
AXO10221.1|118167_118515_-	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZDM8	Stx2-converting_phage	77.6	5.2e-47
>prophage 3
CP031548	Escherichia coli strain cq9 plasmid unnamed2, complete sequence	221041	121687	165937	221041	transposase	Stx2-converting_phage(27.78%)	45	NA	NA
AXO10225.1|121687_122341_-	DNA methylase	NA	A0A2I7RE86	Vibrio_phage	38.4	1.5e-23
AXO10226.1|122920_123319_+	reverse transcriptase	NA	A0A0U4J920	Pseudomonas_phage	56.4	6.2e-28
AXO10227.1|123322_124894_-|transposase	IS66 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	58.5	4.2e-168
AXO10228.1|124913_125261_-	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZDM8	Stx2-converting_phage	77.6	5.2e-47
AXO10229.1|125260_125911_-	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZBP6	Stx2-converting_phage	43.1	1.4e-16
AXO10230.1|126233_127402_-|transposase	IS3 family transposase	transposase	Q716C2	Shigella_phage	98.0	1.6e-180
AXO10231.1|127461_127602_+	type I toxin-antitoxin system hok family toxin	NA	NA	NA	NA	NA
AXO10232.1|127881_128139_+	replication regulatory protein RepA2	NA	NA	NA	NA	NA
AXO10331.1|128160_128289_-	replication protein RepA	NA	NA	NA	NA	NA
AXO10330.1|128372_128447_+	RepA leader peptide Tap	NA	NA	NA	NA	NA
AXO10233.1|128439_129462_+	replication initiation protein	NA	NA	NA	NA	NA
AXO10234.1|130377_130647_+	hypothetical protein	NA	NA	NA	NA	NA
AXO10235.1|130643_130925_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
AXO10332.1|131244_131799_+	3'-5' exonuclease	NA	K7RFY5	Vibrio_phage	40.6	4.9e-23
AXO10236.1|132031_133108_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AXO10237.1|135106_135481_-	heat-labile enterotoxin LT subunit B	NA	D1GID8	Vibrio_virus	79.8	1.1e-50
AXO10238.1|135477_136254_-	heat-labile enterotoxin LT subunit A	NA	A0A023W6A1	Vibrio_virus	80.2	4.9e-122
AXO10239.1|136719_136902_-	hypothetical protein	NA	NA	NA	NA	NA
AXO10240.1|137120_137834_+	hypothetical protein	NA	NA	NA	NA	NA
AXO10241.1|138045_139017_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AXO10333.1|141200_141914_-|transposase	transposase	transposase	NA	NA	NA	NA
AXO10242.1|142217_142916_-	AAA family ATPase	NA	A0A2L1IVB6	Escherichia_phage	87.3	2.8e-116
AXO10243.1|145420_145915_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AXO10334.1|147996_148104_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
AXO10335.1|148356_148533_+	serine/threonine protein kinase	NA	NA	NA	NA	NA
AXO10244.1|148653_149394_+	site-specific recombinase	NA	I3WFA4	Macacine_betaherpesvirus	57.6	2.0e-24
AXO10245.1|149678_150656_-	repFIB replication protein A	NA	J9Q7H0	Salmonella_phage	59.2	1.4e-100
AXO10246.1|150965_151445_-	hypothetical protein	NA	NA	NA	NA	NA
AXO10247.1|151582_151870_-	type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family	NA	A0A2H4JBF4	uncultured_Caudovirales_phage	47.4	2.2e-19
AXO10248.1|151866_152118_-	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA	NA
AXO10249.1|152290_152503_-	hypothetical protein	NA	NA	NA	NA	NA
AXO10250.1|152492_152678_+	hypothetical protein	NA	NA	NA	NA	NA
AXO10251.1|152876_154082_+	ParA family protein	NA	Q1MVJ3	Enterobacteria_phage	88.9	1.8e-203
AXO10252.1|154078_155041_+	ParB/RepB/Spo0J family partition protein	NA	Q1MVJ4	Enterobacteria_phage	68.2	4.0e-113
AXO10253.1|156218_156362_+	DUF1281 domain-containing protein	NA	NA	NA	NA	NA
AXO10254.1|156368_156728_+	hypothetical protein	NA	NA	NA	NA	NA
AXO10255.1|156791_157103_+	hypothetical protein	NA	NA	NA	NA	NA
AXO10256.1|158754_159405_+	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZBP6	Stx2-converting_phage	43.1	1.4e-16
AXO10257.1|159723_160911_-|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
AXO10258.1|160910_161276_-|transposase	transposase	transposase	NA	NA	NA	NA
AXO10259.1|161599_163171_+|transposase	IS66 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	58.5	4.2e-168
AXO10260.1|163405_163717_+	hypothetical protein	NA	NA	NA	NA	NA
AXO10261.1|164227_164443_-	hypothetical protein	NA	NA	NA	NA	NA
AXO10262.1|164578_165139_-	fertility inhibition protein FinO	NA	NA	NA	NA	NA
AXO10263.1|165193_165937_-	type-F conjugative transfer system pilin acetylase TraX	NA	A0A077JBM8	Xanthomonas_phage	30.5	1.9e-09
>prophage 4
CP031548	Escherichia coli strain cq9 plasmid unnamed2, complete sequence	221041	190622	190844	221041		Vibrio_virus(100.0%)	1	NA	NA
AXO10283.1|190622_190844_-	conjugal transfer protein TraR	NA	A2I309	Vibrio_virus	40.8	2.0e-07
>prophage 5
CP031548	Escherichia coli strain cq9 plasmid unnamed2, complete sequence	221041	198789	206434	221041		Yersinia_phage(25.0%)	11	NA	NA
AXO10296.1|198789_199719_-	DUF945 domain-containing protein	NA	A0A2C9CYF8	Yersinia_phage	38.2	1.9e-43
AXO10297.1|199728_200016_-	hypothetical protein	NA	NA	NA	NA	NA
AXO10337.1|200562_200721_-	stable plasmid inheritance protein	NA	NA	NA	NA	NA
AXO10298.1|200995_201715_-	protein PsiA	NA	NA	NA	NA	NA
AXO10299.1|201711_202146_-	conjugation system SOS inhibitor PsiB	NA	NA	NA	NA	NA
AXO10300.1|202200_204159_-	ParB/RepB/Spo0J family partition protein	NA	G8DH78	Emiliania_huxleyi_virus	29.6	1.5e-21
AXO10301.1|204222_204456_-	DUF905 domain-containing protein	NA	NA	NA	NA	NA
AXO10302.1|204517_205057_-	single-stranded DNA-binding protein	NA	I3PGW4	Xanthomonas_phage	74.8	5.2e-46
AXO10303.1|205082_205289_-	single-stranded DNA-binding protein	NA	NA	NA	NA	NA
AXO10304.1|205765_205960_+	hypothetical protein	NA	NA	NA	NA	NA
AXO10305.1|205870_206434_-	class I SAM-dependent methyltransferase	NA	A0A2I7RQ20	Vibrio_phage	39.3	2.3e-20
>prophage 6
CP031548	Escherichia coli strain cq9 plasmid unnamed2, complete sequence	221041	212101	220442	221041	transposase	Vibrio_phage(25.0%)	9	NA	NA
AXO10313.1|212101_212785_-	DNA methylase	NA	A0A2I7RE86	Vibrio_phage	37.4	1.3e-28
AXO10314.1|213167_214139_-	DUF1281 domain-containing protein	NA	NA	NA	NA	NA
AXO10315.1|214508_215468_+	plasmid stabilization protein	NA	A0A222YXF2	Escherichia_phage	40.9	4.2e-62
AXO10316.1|215467_215863_+	plasmid stabilization protein	NA	NA	NA	NA	NA
AXO10317.1|216004_216916_-	TIR domain-containing protein	NA	NA	NA	NA	NA
AXO10318.1|217004_218192_-	hypothetical protein	NA	A0A2I6UI42	Bacillus_phage	28.7	3.4e-05
AXO10319.1|218455_218737_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
AXO10320.1|218733_219003_-	hypothetical protein	NA	NA	NA	NA	NA
AXO10321.1|219269_220442_+|transposase	IS21 family transposase	transposase	U5N3F9	Enterobacteria_phage	99.2	7.0e-229
>prophage 1
CP031549	Escherichia coli strain cq9 plasmid unnamed3, complete sequence	189020	81547	121434	189020	transposase	Escherichia_phage(33.33%)	40	NA	NA
AXO10430.1|81547_82552_-|transposase	IS110-like element IS5075 family transposase	transposase	NA	NA	NA	NA
AXO10431.1|86223_86505_-|transposase	transposase	transposase	NA	NA	NA	NA
AXO10432.1|88244_88535_+	DUF1010 domain-containing protein	NA	NA	NA	NA	NA
AXO10433.1|88540_89332_+	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2	NA	NA	NA	NA	NA
AXO10434.1|89593_90853_+	chloramphenicol efflux MFS transporter CmlA1	NA	S4TR35	Salmonella_phage	31.7	4.8e-26
AXO10435.1|90945_91737_+	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA1	NA	NA	NA	NA	NA
AXO10436.1|91906_92239_+	quaternary ammonium compound efflux SMR transporter QacL	NA	NA	NA	NA	NA
AXO10437.1|92378_92564_+	hypothetical protein	NA	NA	NA	NA	NA
AXO10438.1|93418_94210_-	sulfonamide-resistant dihydropteroate synthase Sul3	NA	A0A0B5J4J5	Pandoravirus	26.5	1.2e-14
AXO10439.1|94679_94925_-	hypothetical protein	NA	NA	NA	NA	NA
AXO10440.1|94962_95826_-	SDR family NAD(P)-dependent oxidoreductase	NA	W8CYX9	Bacillus_phage	31.0	2.5e-05
AXO10441.1|96915_97731_+	aminoglycoside O-phosphotransferase APH(3')-Ia	NA	A0A193DTG4	Autographa_californica_nuclear_polyhedrosis_virus	100.0	6.1e-163
AXO10442.1|97920_98625_-|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	99.6	3.1e-139
AXO10443.1|100015_100723_-	EAL domain-containing protein	NA	NA	NA	NA	NA
AXO10444.1|100719_100956_-	mercury resistance protein	NA	NA	NA	NA	NA
AXO10445.1|100952_101315_-	transcriptional regulator	NA	NA	NA	NA	NA
AXO10446.1|101332_103027_-	mercury(II) reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	8.8e-39
AXO10552.1|103078_103501_-	mercury transporter MerC	NA	NA	NA	NA	NA
AXO10447.1|103536_103812_-	mercury resistance system periplasmic binding protein MerP	NA	NA	NA	NA	NA
AXO10448.1|103825_104176_-	mercuric ion transporter MerT	NA	NA	NA	NA	NA
AXO10449.1|104247_104682_+	mercuric resistance operon regulatory protein	NA	NA	NA	NA	NA
AXO10450.1|104728_105433_-|transposase	IS6 family transposase IS15DI	transposase	A0A077SL39	Escherichia_phage	99.6	1.2e-138
AXO10451.1|105479_105752_-	hypothetical protein	NA	NA	NA	NA	NA
AXO10553.1|105932_106106_+	toxin-antitoxin system, antitoxin component, AbrB family protein	NA	NA	NA	NA	NA
AXO10452.1|106047_106278_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA	NA
AXO10453.1|106274_106691_+	PIN domain-containing protein	NA	NA	NA	NA	NA
AXO10454.1|106852_108991_-	AAA family ATPase	NA	NA	NA	NA	NA
AXO10455.1|109344_109602_+	hypothetical protein	NA	NA	NA	NA	NA
AXO10456.1|109601_110192_+	hypothetical protein	NA	NA	NA	NA	NA
AXO10457.1|110454_112011_+	ATP-binding cassette domain-containing protein	NA	NA	NA	NA	NA
AXO10458.1|112202_112820_+	proQ/FINO family protein	NA	NA	NA	NA	NA
AXO10459.1|113112_114246_-	permease	NA	NA	NA	NA	NA
AXO10460.1|114351_114675_+	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AXO10461.1|114775_115486_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	73.4	2.1e-95
AXO10462.1|117924_118629_-|transposase	IS6 family transposase IS15DI	transposase	A0A077SL39	Escherichia_phage	99.6	1.2e-138
AXO10463.1|118665_119007_-	hypothetical protein	NA	NA	NA	NA	NA
AXO10464.1|119521_119632_-	hypothetical protein	NA	E4ZFP9	Streptococcus_phage	88.6	1.9e-08
AXO10465.1|119636_120374_-	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B)	NA	E4ZFQ0	Streptococcus_phage	99.6	6.3e-135
AXO10466.1|120499_120595_-	23S rRNA methyltransferase attenuator leader peptide ErmL	NA	NA	NA	NA	NA
AXO10467.1|120729_121434_+|transposase	IS6 family transposase IS15DIV	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
>prophage 2
CP031549	Escherichia coli strain cq9 plasmid unnamed3, complete sequence	189020	159705	186119	189020	transposase	Escherichia_phage(33.33%)	41	NA	NA
AXO10506.1|159705_160893_-|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
AXO10507.1|160892_161258_-|transposase	transposase	transposase	NA	NA	NA	NA
AXO10508.1|161185_162280_-	phosphohydrolase	NA	H7BVI4	unidentified_phage	29.7	1.2e-44
AXO10509.1|162548_163157_+	hypothetical protein	NA	NA	NA	NA	NA
AXO10510.1|163161_163683_+	hypothetical protein	NA	NA	NA	NA	NA
AXO10511.1|163685_164207_+	hypothetical protein	NA	NA	NA	NA	NA
AXO10558.1|164333_164777_+	hypothetical protein	NA	NA	NA	NA	NA
AXO10512.1|164766_165081_+	hypothetical protein	NA	NA	NA	NA	NA
AXO10513.1|165085_165940_+	hypothetical protein	NA	NA	NA	NA	NA
AXO10514.1|165921_166899_+	S49 family peptidase	NA	Q9JMP1	Wolbachia_phage	31.5	7.1e-17
AXO10515.1|166914_167775_+	DsbA family protein	NA	NA	NA	NA	NA
AXO10516.1|167808_168237_+	hypothetical protein	NA	NA	NA	NA	NA
AXO10517.1|168293_168653_+	hypothetical protein	NA	A0A076G835	Escherichia_phage	49.4	5.6e-20
AXO10518.1|168652_169099_+	Fe3+-siderophore ABC transporter permease	NA	NA	NA	NA	NA
AXO10519.1|169095_169614_+	nitrite reductase	NA	NA	NA	NA	NA
AXO10520.1|169613_169844_+	hypothetical protein	NA	NA	NA	NA	NA
AXO10521.1|169830_170688_+	hypothetical protein	NA	NA	NA	NA	NA
AXO10522.1|170713_170902_+	hypothetical protein	NA	NA	NA	NA	NA
AXO10523.1|170918_171446_+	nuclease	NA	O64020	Bacillus_phage	37.0	1.3e-09
AXO10524.1|171503_171776_+	HU family DNA-binding protein	NA	A3E2K9	Sodalis_phage	59.6	4.2e-20
AXO10525.1|171863_172157_+	chromosome segregation protein ParM	NA	NA	NA	NA	NA
AXO10526.1|172183_172486_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AXO10527.1|172490_172841_-	diaminopimelate decarboxylase	NA	NA	NA	NA	NA
AXO10528.1|173003_173552_+	transcriptional regulator	NA	NA	NA	NA	NA
AXO10529.1|173641_173893_+	hypothetical protein	NA	NA	NA	NA	NA
AXO10530.1|173892_174087_+	hypothetical protein	NA	NA	NA	NA	NA
AXO10531.1|174097_174469_+	hypothetical protein	NA	NA	NA	NA	NA
AXO10532.1|174461_174932_+	hypothetical protein	NA	NA	NA	NA	NA
AXO10533.1|174946_175288_-	hypothetical protein	NA	NA	NA	NA	NA
AXO10534.1|175405_175867_+	DUF1643 domain-containing protein	NA	B5WZV8	Pseudomonas_phage	60.5	1.5e-46
AXO10535.1|175869_176367_+	hypothetical protein	NA	NA	NA	NA	NA
AXO10536.1|176581_177286_-|transposase	IS6 family transposase IS15DIV	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
AXO10537.1|177836_178541_+|transposase	IS6 family transposase IS15DIV	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
AXO10538.1|178574_179066_-	hypothetical protein	NA	NA	NA	NA	NA
AXO10539.1|179172_179910_+	resolvase	NA	NA	NA	NA	NA
AXO10540.1|179906_180131_+	hypothetical protein	NA	NA	NA	NA	NA
AXO10541.1|180341_181835_+|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
AXO10542.1|181865_182750_+	DUF3363 domain-containing protein	NA	NA	NA	NA	NA
AXO10543.1|182966_184181_+	chloramphenicol/florfenicol efflux MFS transporter FloR	NA	S4TR35	Salmonella_phage	28.7	5.5e-19
AXO10544.1|184208_184514_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXO10545.1|184625_186119_+|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
