The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP022723	Bifidobacterium bifidum strain S6 chromosome, complete genome	2311342	52150	102686	2311342	transposase,protease,integrase,tRNA	uncultured_Mediterranean_phage(25.0%)	42	47676:47693	106895:106912
47676:47693	attL	CGGCGATGTCGATCTTCT	NA	NA	NA	NA
AXM90777.1|52150_53236_+|integrase	site-specific integrase	integrase	A0A0E3XBN7	Gordonia_phage	39.0	8.9e-61
AXM90778.1|53252_53816_-	hypothetical protein	NA	NA	NA	NA	NA
AXM90779.1|53808_54978_-	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA	NA
AXM90780.1|55393_56332_-|protease	zinc metalloprotease HtpX	protease	NA	NA	NA	NA
AXM90781.1|56503_57955_-	glutamate synthase	NA	NA	NA	NA	NA
AXM90782.1|58125_60327_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	28.5	6.7e-39
AXM90783.1|60705_62619_-	peptidase	NA	A0A1B1IT49	uncultured_Mediterranean_phage	25.8	8.4e-14
AXM90784.1|62987_64289_+|tRNA	tRNA-guanine(34) transglycosylase	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	32.4	2.8e-53
AXM90785.1|64655_64916_+	hypothetical protein	NA	NA	NA	NA	NA
AXM92317.1|64922_65420_-	N-acetyltransferase	NA	NA	NA	NA	NA
AXM90786.1|65416_66235_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AXM90787.1|66356_66689_-	hypothetical protein	NA	NA	NA	NA	NA
AXM90788.1|66731_66968_-	hypothetical protein	NA	NA	NA	NA	NA
AXM90789.1|67001_67439_+	DivIVA domain-containing protein	NA	NA	NA	NA	NA
AXM90790.1|67589_68105_+	(deoxy)nucleoside triphosphate pyrophosphohydrolase	NA	NA	NA	NA	NA
AXM90791.1|68101_71287_+	DUF3427 domain-containing protein	NA	U3PFS7	Lactobacillus_phage	26.0	2.9e-19
AXM90792.1|71306_71513_+	hypothetical protein	NA	NA	NA	NA	NA
AXM90793.1|71636_72137_+	hypothetical protein	NA	NA	NA	NA	NA
AXM92318.1|72141_73146_-	peptide-methionine (R)-S-oxide reductase	NA	NA	NA	NA	NA
AXM90794.1|73247_73748_-	hypothetical protein	NA	NA	NA	NA	NA
AXM90795.1|73826_74582_-	DUF1109 domain-containing protein	NA	NA	NA	NA	NA
AXM92319.1|74845_75796_-	EamA family transporter	NA	NA	NA	NA	NA
AXM90796.1|75855_76911_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AXM90797.1|77064_79392_-	hypothetical protein	NA	NA	NA	NA	NA
AXM90798.1|79388_82214_-	ABC transporter	NA	NA	NA	NA	NA
AXM92320.1|82438_84970_-	peptidase	NA	NA	NA	NA	NA
AXM90799.1|85209_85911_+	DUF2662 domain-containing protein	NA	NA	NA	NA	NA
AXM90800.1|85938_86481_+	FHA domain-containing protein	NA	NA	NA	NA	NA
AXM90801.1|86487_88137_+	serine/threonine-protein phosphatase	NA	NA	NA	NA	NA
AXM90802.1|88133_89612_+	FtsW/RodA/SpoVE family cell cycle protein	NA	NA	NA	NA	NA
AXM90803.1|89608_91075_+	penicillin-binding protein	NA	NA	NA	NA	NA
AXM90804.1|92056_94114_+	serine/threonine protein kinase	NA	Q8JE84	Murine_leukemia_virus	31.8	2.0e-16
AXM90805.1|94339_94984_-	glutamine amidotransferase	NA	A0A0P0IKJ1	Acinetobacter_phage	40.7	1.3e-35
AXM90806.1|95079_96309_-	class E sortase	NA	NA	NA	NA	NA
AXM90807.1|96305_97094_-	DUF881 domain-containing protein	NA	NA	NA	NA	NA
AXM90808.1|97171_97612_+	septation inhibitor protein	NA	NA	NA	NA	NA
AXM90809.1|97737_99066_-	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AXM90810.1|99498_99600_-|integrase	integrase	integrase	NA	NA	NA	NA
AXM90811.1|100019_100805_-|protease	rhomboid family intramembrane serine protease	protease	NA	NA	NA	NA
AXM90812.1|100991_101213_+	hypothetical protein	NA	NA	NA	NA	NA
AXM92321.1|101319_102174_-|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	38.1	1.6e-44
AXM90813.1|102125_102686_-|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
106895:106912	attR	CGGCGATGTCGATCTTCT	NA	NA	NA	NA
>prophage 2
CP022723	Bifidobacterium bifidum strain S6 chromosome, complete genome	2311342	422621	463523	2311342	holin,tRNA,transposase,capsid,tail,integrase,portal	Gordonia_phage(25.0%)	37	427862:427877	459431:459446
AXM91006.1|422621_422921_+|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCAB subunit C	tRNA	NA	NA	NA	NA
AXM91007.1|422923_424462_+|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCAB subunit A	tRNA	NA	NA	NA	NA
AXM91008.1|424486_425986_+|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCAB subunit B	tRNA	NA	NA	NA	NA
AXM91009.1|426201_427245_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AXM91010.1|427241_427556_+	DUF2469 domain-containing protein	NA	NA	NA	NA	NA
AXM91011.1|427795_429409_+	hypothetical protein	NA	NA	NA	NA	NA
427862:427877	attL	TTCGTCAACAACGGCG	NA	NA	NA	NA
AXM91012.1|429613_431674_+	transcription termination factor Rho	NA	NA	NA	NA	NA
AXM91013.1|431771_433001_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
AXM91014.1|433170_433713_+	AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AXM91015.1|433825_434254_+	chorismate mutase	NA	NA	NA	NA	NA
AXM92353.1|434375_436556_+	hypothetical protein	NA	NA	NA	NA	NA
AXM91016.1|436666_439408_-|tRNA	valine--tRNA ligase	tRNA	A0A2K9KZB8	Tupanvirus	38.6	1.8e-163
AXM91017.1|439490_441047_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXM92354.1|441130_441757_-	endonuclease III	NA	NA	NA	NA	NA
AXM91018.1|441805_442567_-	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	33.1	6.3e-13
AXM91019.1|442713_443472_+	hypothetical protein	NA	NA	NA	NA	NA
AXM91020.1|443844_444432_-	hypothetical protein	NA	NA	NA	NA	NA
AXM91021.1|444964_445459_-	inorganic pyrophosphatase	NA	NA	NA	NA	NA
AXM91022.1|445625_447941_-	DUF3416 domain-containing protein	NA	NA	NA	NA	NA
AXM92355.1|448218_450438_+	peptidase	NA	NA	NA	NA	NA
AXM91023.1|450588_450816_-	antitoxin	NA	NA	NA	NA	NA
AXM92356.1|450761_451028_-	hypothetical protein	NA	NA	NA	NA	NA
AXM91024.1|451191_452298_-|transposase	IS30 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	31.1	5.0e-35
AXM91025.1|452792_453623_+|integrase	integrase	integrase	A0A2P1CCU8	Gordonia_phage	43.7	6.8e-53
AXM91026.1|453619_454492_-	N-acetylmuramoyl-L-alanine amidase	NA	NA	NA	NA	NA
AXM91027.1|454491_454848_-|holin	holin	holin	NA	NA	NA	NA
AXM91028.1|454863_455541_-	hypothetical protein	NA	NA	NA	NA	NA
AXM91029.1|455537_457052_-	hypothetical protein	NA	NA	NA	NA	NA
AXM91030.1|457051_458920_-|tail	phage tail protein	tail	U3PFW9	Lactobacillus_phage	68.8	6.2e-70
AXM91031.1|458923_459154_-	hypothetical protein	NA	NA	NA	NA	NA
AXM91032.1|459078_459351_-	hypothetical protein	NA	NA	NA	NA	NA
AXM91033.1|459350_459734_-	hypothetical protein	NA	A0A2P1CBZ9	Gordonia_phage	38.1	5.6e-18
459431:459446	attR	CGCCGTTGTTGACGAA	NA	NA	NA	NA
AXM91034.1|459740_460151_-	hypothetical protein	NA	NA	NA	NA	NA
AXM92357.1|460172_460493_-	hypothetical protein	NA	NA	NA	NA	NA
AXM92358.1|460537_460867_-	hypothetical protein	NA	NA	NA	NA	NA
AXM91035.1|460866_462423_-|capsid	phage major capsid protein	capsid	I6S2W2	Marinomonas_phage	40.6	7.6e-13
AXM91036.1|462419_463523_-|portal	phage portal protein	portal	A0A2R4A099	Microbacterium_phage	38.3	2.8e-62
>prophage 3
CP022723	Bifidobacterium bifidum strain S6 chromosome, complete genome	2311342	974331	1042136	2311342	transposase,protease,integrase	Agrobacterium_phage(30.0%)	58	975709:975725	978758:978774
AXM91379.1|974331_975660_+|integrase	site-specific integrase	integrase	A0A2I7SCV1	Paenibacillus_phage	24.1	1.0e-10
975709:975725	attL	ACCGAGATACCGAAAAA	NA	NA	NA	NA
AXM91380.1|975807_976575_-	cell filamentation protein Fic	NA	S4TP71	Salmonella_phage	28.3	2.5e-09
AXM91381.1|976577_976769_-	hypothetical protein	NA	NA	NA	NA	NA
AXM91382.1|976964_977180_+|integrase	integrase	integrase	NA	NA	NA	NA
AXM91383.1|977899_978622_+	EcsC family protein	NA	NA	NA	NA	NA
AXM91384.1|978700_978937_+	macrolide ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
978758:978774	attR	ACCGAGATACCGAAAAA	NA	NA	NA	NA
AXM91385.1|978965_979889_+	colicin transporter	NA	NA	NA	NA	NA
AXM91386.1|979995_985512_+	cell wall anchor protein	NA	NA	NA	NA	NA
AXM91387.1|985757_985991_+	hypothetical protein	NA	NA	NA	NA	NA
AXM91388.1|986005_986851_+	hypothetical protein	NA	NA	NA	NA	NA
AXM91389.1|987237_989634_+	transfer complex protein	NA	NA	NA	NA	NA
AXM91390.1|989638_991342_+	glycoside hydrolase	NA	M4I0L3	Staphylococcus_phage	42.5	2.5e-17
AXM91391.1|991356_991896_+	cobalt transporter	NA	NA	NA	NA	NA
AXM91392.1|991951_993319_+	molecular chaperone	NA	NA	NA	NA	NA
AXM91393.1|993325_995158_-	conjugal transfer protein TraG	NA	NA	NA	NA	NA
AXM91394.1|995170_995482_-	hypothetical protein	NA	NA	NA	NA	NA
AXM91395.1|995478_995787_-	aminopeptidase	NA	NA	NA	NA	NA
AXM91396.1|998986_1000165_-|transposase	IS256 family transposase	transposase	NA	NA	NA	NA
AXM91397.1|1004046_1004484_-	TnpV protein	NA	NA	NA	NA	NA
AXM91398.1|1004548_1004848_+	hypothetical protein	NA	NA	NA	NA	NA
AXM91399.1|1004877_1006815_-	hypothetical protein	NA	NA	NA	NA	NA
AXM91400.1|1006827_1007907_-	mobilization protein	NA	NA	NA	NA	NA
AXM91401.1|1007951_1009586_-	mobilization protein	NA	NA	NA	NA	NA
AXM91402.1|1009588_1009969_-	plasmid mobilization relaxosome protein MobC	NA	NA	NA	NA	NA
AXM91403.1|1010417_1010666_-	DUF2442 domain-containing protein	NA	NA	NA	NA	NA
AXM91404.1|1010682_1010970_-	hypothetical protein	NA	NA	NA	NA	NA
AXM91405.1|1011322_1011646_-	hypothetical protein	NA	NA	NA	NA	NA
AXM91406.1|1011642_1011945_-	hypothetical protein	NA	NA	NA	NA	NA
AXM91407.1|1012374_1012806_+	gas vesicle protein	NA	NA	NA	NA	NA
AXM91408.1|1012825_1015033_+	DNA topoisomerase III	NA	NA	NA	NA	NA
AXM91409.1|1015084_1015594_+	hypothetical protein	NA	NA	NA	NA	NA
AXM91410.1|1015701_1016115_+	hypothetical protein	NA	NA	NA	NA	NA
AXM91411.1|1016139_1016508_+	hypothetical protein	NA	NA	NA	NA	NA
AXM91412.1|1016550_1017864_+	toxin HipA	NA	NA	NA	NA	NA
AXM91413.1|1018381_1019305_-	colicin transporter	NA	NA	NA	NA	NA
AXM92403.1|1019333_1019606_-	macrolide ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AXM91414.1|1019611_1020283_-	DNA partition protein	NA	NA	NA	NA	NA
AXM91415.1|1020502_1021000_-	WhiB family transcriptional regulator	NA	NA	NA	NA	NA
AXM91416.1|1020996_1021251_-	hypothetical protein	NA	NA	NA	NA	NA
AXM91417.1|1021247_1022378_-	hypothetical protein	NA	A0A1W6JTD5	Pseudomonas_phage	43.0	3.7e-09
AXM91418.1|1022526_1022718_-	hypothetical protein	NA	NA	NA	NA	NA
AXM91419.1|1022885_1023659_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AXM91420.1|1023850_1024096_-	transcriptional regulator	NA	NA	NA	NA	NA
AXM91421.1|1024283_1025282_+	peptidyl-prolyl cis-trans isomerase	NA	A0A1V0S9I2	Catovirus	44.1	2.3e-23
AXM92404.1|1025427_1026279_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
AXM91422.1|1026475_1026982_+	ATP-binding protein	NA	NA	NA	NA	NA
AXM91423.1|1027018_1028170_+	amidohydrolase	NA	NA	NA	NA	NA
AXM91424.1|1028252_1029950_+	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	35.6	1.8e-84
AXM91425.1|1029982_1030264_+	hypothetical protein	NA	NA	NA	NA	NA
AXM91426.1|1030383_1032759_+	formate acetyltransferase	NA	A0A2P0VNR5	Tetraselmis_virus	38.8	2.9e-149
AXM92405.1|1032950_1033832_+	pyruvate formate-lyase 1-activating enzyme	NA	NA	NA	NA	NA
AXM91427.1|1033967_1034558_+	hypothetical protein	NA	NA	NA	NA	NA
AXM91428.1|1034547_1035834_+	ribonuclease D	NA	NA	NA	NA	NA
AXM91429.1|1035886_1037272_+	trigger factor	NA	NA	NA	NA	NA
AXM91430.1|1037477_1038881_+	chloride channel protein	NA	NA	NA	NA	NA
AXM91431.1|1039385_1039997_+|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	49.7	6.8e-42
AXM92406.1|1040002_1040722_+|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	42.6	2.9e-36
AXM91432.1|1040822_1042136_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	50.4	3.3e-110
