The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP031458	Xanthomonas oryzae pv. oryzae strain JL28 chromosome, complete genome	4697691	5560	84688	4697691	protease,tRNA,transposase	Ralstonia_virus(20.0%)	59	NA	NA
AXM27104.1|5560_6901_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	tRNA	NA	NA	NA	NA
AXM27105.1|7059_7917_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
AXM27106.1|10642_11743_+	glycerophosphodiester phosphodiesterase	NA	NA	NA	NA	NA
AXM27107.1|11872_12658_-|protease	rhomboid family intramembrane serine protease	protease	NA	NA	NA	NA
AXM27108.1|13032_13989_-	TerC family protein	NA	K4F9T9	Cronobacter_phage	29.9	8.4e-31
AXM27109.1|14251_15418_+	class I SAM-dependent rRNA methyltransferase	NA	NA	NA	NA	NA
AXM27110.1|15536_15857_+	hypothetical protein	NA	NA	NA	NA	NA
AXM30355.1|17770_19081_+	MFS transporter	NA	NA	NA	NA	NA
AXM27111.1|19106_20276_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	39.0	1.3e-41
AXM27112.1|21287_21494_+	hypothetical protein	NA	NA	NA	NA	NA
AXM27113.1|21868_22306_+	hypothetical protein	NA	NA	NA	NA	NA
AXM27114.1|22354_22612_+	hypothetical protein	NA	NA	NA	NA	NA
AXM27115.1|23723_25043_-|transposase	IS701 family transposase	transposase	NA	NA	NA	NA
AXM27116.1|25434_25836_+	PAAR domain-containing protein	NA	NA	NA	NA	NA
AXM27117.1|25832_26342_+	DUF4123 domain-containing protein	NA	A4PE24	Ralstonia_virus	34.4	4.8e-09
AXM30356.1|26322_26664_+	hypothetical protein	NA	NA	NA	NA	NA
AXM27118.1|26677_27385_+	hypothetical protein	NA	A4PE25	Ralstonia_virus	34.6	2.0e-08
AXM27119.1|27381_28134_+	hypothetical protein	NA	NA	NA	NA	NA
AXM27120.1|30485_31598_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
AXM27121.1|31584_31791_-	hypothetical protein	NA	NA	NA	NA	NA
AXM27122.1|33606_33927_+	hypothetical protein	NA	NA	NA	NA	NA
AXM27123.1|34040_35402_+	MFS transporter	NA	Q6JIH2	Burkholderia_virus	26.9	8.3e-32
AXM27124.1|35677_36244_-	FUSC family protein	NA	NA	NA	NA	NA
AXM27125.1|36240_36864_-	transporter	NA	NA	NA	NA	NA
AXM27126.1|37119_37563_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AXM27127.1|37711_38341_+	GTP cyclohydrolase I FolE	NA	E7DN69	Pneumococcus_phage	48.9	1.2e-46
AXM27128.1|38414_39611_+	chromosome segregation protein SMC	NA	NA	NA	NA	NA
AXM27129.1|39610_40198_+	DUF4276 family protein	NA	NA	NA	NA	NA
AXM27130.1|40194_41667_+	DUF3375 domain-containing protein	NA	NA	NA	NA	NA
AXM27131.1|41650_42349_+	DUF4194 domain-containing protein	NA	NA	NA	NA	NA
AXM27132.1|42496_45928_+	ATP-binding protein	NA	NA	NA	NA	NA
AXM30357.1|46025_47207_+	hypothetical protein	NA	NA	NA	NA	NA
AXM27133.1|48619_49939_+|transposase	IS701 family transposase	transposase	NA	NA	NA	NA
AXM27134.1|50117_50468_+	PepSY domain-containing protein	NA	NA	NA	NA	NA
AXM27135.1|50615_52427_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
AXM27136.1|52577_53234_-	hypothetical protein	NA	NA	NA	NA	NA
AXM27137.1|53394_54630_+	peptidase M23	NA	NA	NA	NA	NA
AXM27138.1|54734_56258_+	PDZ domain-containing protein	NA	A0A0R6PIZ1	Moraxella_phage	29.2	1.7e-25
AXM27139.1|56564_57557_-	D-2-hydroxyacid dehydrogenase family protein	NA	M1HUT5	Acanthocystis_turfacea_Chlorella_virus	27.4	8.5e-10
AXM30358.1|57556_57877_-	DUF1820 family protein	NA	NA	NA	NA	NA
AXM27140.1|57993_58686_-|protease	rhomboid family intramembrane serine protease	protease	NA	NA	NA	NA
AXM27141.1|58902_60243_+	hypothetical protein	NA	NA	NA	NA	NA
AXM27142.1|61098_62226_+	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
AXM30359.1|65478_66024_-	glutathione peroxidase	NA	Q70H87	Fowlpox_virus	33.9	2.6e-16
AXM30360.1|66401_66764_-	hypothetical protein	NA	NA	NA	NA	NA
AXM27143.1|67169_69494_-	DNA recombination protein RmuC	NA	NA	NA	NA	NA
AXM27144.1|69558_69768_-	hypothetical protein	NA	NA	NA	NA	NA
AXM30361.1|69984_71400_+	amino acid permease	NA	NA	NA	NA	NA
AXM27145.1|71575_72541_+|transposase	IS1595 family transposase	transposase	NA	NA	NA	NA
AXM27146.1|73121_73346_+	hypothetical protein	NA	NA	NA	NA	NA
AXM27147.1|73521_75708_-	DNA helicase II	NA	A7KV33	Bacillus_phage	36.7	2.2e-111
AXM27148.1|75717_76056_-	hypothetical protein	NA	NA	NA	NA	NA
AXM27149.1|76055_77450_-	pyridine nucleotide-disulfide oxidoreductase	NA	NA	NA	NA	NA
AXM27150.1|78021_79440_-	cardiolipin synthase	NA	NA	NA	NA	NA
AXM27151.1|79456_80764_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXM27152.1|80861_81533_+	4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase	NA	NA	NA	NA	NA
AXM27153.1|81525_82581_+	4-oxalomesaconate tautomerase	NA	NA	NA	NA	NA
AXM30362.1|82639_82813_+	4-oxalomesaconate hydratase	NA	NA	NA	NA	NA
AXM27154.1|83452_84688_+|transposase	ISL3-like element ISXoo13 family transposase	transposase	NA	NA	NA	NA
>prophage 2
CP031458	Xanthomonas oryzae pv. oryzae strain JL28 chromosome, complete genome	4697691	123107	205082	4697691	tail,transposase	Arthrobacter_phage(18.75%)	58	NA	NA
AXM27189.1|123107_124076_+|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	60.0	8.7e-100
AXM30366.1|126568_127606_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
AXM27190.1|129299_130145_-	ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	26.7	3.7e-06
AXM30368.1|130304_131510_+	acyl-CoA desaturase	NA	NA	NA	NA	NA
AXM30367.1|131562_131895_+	calcium-dependent protein kinase 21	NA	NA	NA	NA	NA
AXM30369.1|131943_132681_+	ATP-binding cassette domain-containing protein	NA	G3M9Y6	Bacillus_virus	31.1	1.5e-19
AXM27191.1|132677_134150_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
AXM27192.1|134436_135618_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
AXM27193.1|135689_136973_+	ergothioneine biosynthesis protein EgtB	NA	NA	NA	NA	NA
AXM27194.1|136969_137956_+	L-histidine N(alpha)-methyltransferase	NA	NA	NA	NA	NA
AXM27195.1|138000_139278_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
AXM27196.1|139274_139895_-	transcriptional regulator	NA	A0A0K1LLP9	Caulobacter_phage	41.9	1.9e-07
AXM27197.1|140037_143745_-	indolepyruvate ferredoxin oxidoreductase family protein	NA	NA	NA	NA	NA
AXM27198.1|144836_145754_+	AEC family transporter	NA	NA	NA	NA	NA
AXM27199.1|146106_146739_+	ParA family protein	NA	A0A142F1W4	Mycobacterium_phage	36.6	1.6e-09
AXM27200.1|146754_147231_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
AXM27201.1|147234_147807_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
AXM27202.1|147803_149819_+	phospholipase D family protein	NA	NA	NA	NA	NA
AXM27203.1|150117_150546_+	hotdog fold thioesterase	NA	NA	NA	NA	NA
AXM27204.1|150665_151469_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AXM27205.1|151528_152518_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
AXM27206.1|152931_155004_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
AXM27207.1|155198_155810_+	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA	NA
AXM27208.1|156963_157770_-	META domain-containing protein	NA	NA	NA	NA	NA
AXM27209.1|157906_158704_-	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA	NA
AXM27210.1|158925_160335_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
AXM30370.1|160612_160951_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
AXM27211.1|160940_162416_+	ammonium transporter	NA	H8ZJB2	Ostreococcus_tauri_virus	32.2	2.0e-31
AXM27212.1|162686_163742_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
AXM27213.1|163734_165162_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
AXM30371.1|165783_166263_+	superoxide dismutase family protein	NA	I3XM75	Mamestra_brassicae_nuclear_polyhedrosis_virus	40.6	6.1e-14
AXM30372.1|166333_166966_+	superoxide dismutase family protein	NA	M1ICI8	Paramecium_bursaria_Chlorella_virus	41.0	7.8e-17
AXM27214.1|167248_168214_-|transposase	IS1595 family transposase	transposase	NA	NA	NA	NA
AXM27215.1|168301_168838_-	microcystin-dependent protein	NA	A0A0U4JYA4	Arthrobacter_phage	32.1	1.2e-10
AXM27216.1|168896_169424_-|tail	phage tail protein	tail	A0A218M5J0	Arthrobacter_phage	33.1	1.2e-15
AXM27217.1|169492_170038_-	microcystin-dependent protein	NA	A0A0U4JXW2	Arthrobacter_phage	32.9	1.9e-11
AXM27218.1|176951_180365_+	exodeoxyribonuclease V subunit gamma	NA	NA	NA	NA	NA
AXM27219.1|180361_184429_+	exodeoxyribonuclease V subunit beta	NA	S5MMD7	Bacillus_phage	22.5	4.1e-10
AXM27220.1|184616_186869_+	exodeoxyribonuclease V subunit alpha	NA	A0A0K2FLP8	Brevibacillus_phage	21.7	8.7e-10
AXM27221.1|186963_187245_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A222YWE2	Escherichia_phage	40.7	3.1e-10
AXM27222.1|187262_187553_+	addiction module antidote protein, HigA family	NA	M9MUN2	Rhodococcus_phage	53.8	1.5e-15
AXM27223.1|188490_189885_+	type III secretion system effector protein	NA	NA	NA	NA	NA
AXM27224.1|189987_190086_-	hypothetical protein	NA	NA	NA	NA	NA
AXM27225.1|190334_190667_-	hypothetical protein	NA	NA	NA	NA	NA
AXM27226.1|190807_191002_-	hypothetical protein	NA	NA	NA	NA	NA
AXM27227.1|191002_191248_+	hypothetical protein	NA	NA	NA	NA	NA
AXM27228.1|191363_191798_+	PAAR domain-containing protein	NA	NA	NA	NA	NA
AXM27229.1|192269_192602_+	hypothetical protein	NA	NA	NA	NA	NA
AXM30373.1|192700_193396_+	hypothetical protein	NA	NA	NA	NA	NA
AXM27230.1|193392_194151_+	hypothetical protein	NA	NA	NA	NA	NA
AXM27231.1|194359_194608_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AXM27232.1|194769_195036_+	hypothetical protein	NA	NA	NA	NA	NA
AXM27233.1|198212_199076_+	DUF2884 family protein	NA	NA	NA	NA	NA
AXM27234.1|199322_199751_-	organic hydroperoxide resistance protein	NA	NA	NA	NA	NA
AXM27235.1|199852_200311_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AXM27236.1|201777_202734_-|transposase	IS30 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	36.0	1.4e-41
AXM27237.1|202836_204156_-|transposase	IS701 family transposase	transposase	NA	NA	NA	NA
AXM27238.1|204284_205082_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
>prophage 3
CP031458	Xanthomonas oryzae pv. oryzae strain JL28 chromosome, complete genome	4697691	388178	446110	4697691	integrase,transposase	Leptospira_phage(25.0%)	37	432149:432168	446208:446227
AXM27350.1|388178_389144_-|transposase	IS1595 family transposase	transposase	NA	NA	NA	NA
AXM27351.1|390093_390714_+	hypothetical protein	NA	NA	NA	NA	NA
AXM27352.1|391011_391635_+	hypothetical protein	NA	NA	NA	NA	NA
AXM27353.1|392063_392984_-	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA	NA
AXM27354.1|392983_393502_-	hypothetical protein	NA	NA	NA	NA	NA
AXM27355.1|393663_396489_+	bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase	NA	NA	NA	NA	NA
AXM27356.1|396584_397145_-	VUT family protein	NA	A0A2I7SAW6	Vibrio_phage	29.6	2.1e-13
AXM27357.1|400243_400744_-	hypothetical protein	NA	NA	NA	NA	NA
AXM27358.1|400740_401610_-	DUF2145 domain-containing protein	NA	NA	NA	NA	NA
AXM30394.1|401652_402600_-	nucleoside-diphosphate sugar epimerase	NA	NA	NA	NA	NA
AXM27359.1|402733_403324_+	nitroreductase family protein	NA	NA	NA	NA	NA
AXM27360.1|403534_404287_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
AXM27361.1|404772_405192_-	anti-sigma factor antagonist	NA	NA	NA	NA	NA
AXM27362.1|405188_405620_-	ATP-binding protein	NA	NA	NA	NA	NA
AXM27363.1|405616_407623_-	HAMP domain-containing protein	NA	NA	NA	NA	NA
AXM27364.1|407840_408188_+	hypothetical protein	NA	NA	NA	NA	NA
AXM27365.1|408472_408700_+	hypothetical protein	NA	NA	NA	NA	NA
AXM27366.1|408696_409209_+	hypothetical protein	NA	Q8W6R2	Burkholderia_virus	68.8	1.6e-44
AXM27367.1|410631_410832_+	hypothetical protein	NA	NA	NA	NA	NA
AXM27368.1|410897_414827_-	avirulence protein	NA	NA	NA	NA	NA
AXM27369.1|418148_420836_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
AXM27370.1|421334_421589_-	hypothetical protein	NA	NA	NA	NA	NA
AXM30395.1|422767_423869_+|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	40.5	6.7e-40
AXM27371.1|424227_424518_-	DUF2782 domain-containing protein	NA	NA	NA	NA	NA
AXM27372.1|424594_427396_+	DNA polymerase I	NA	A0A218MKQ4	uncultured_virus	30.4	2.4e-65
AXM27373.1|428343_429243_-	coproporphyrinogen III oxidase	NA	NA	NA	NA	NA
AXM27374.1|430369_431512_+|transposase	IS5 family transposase	transposase	A0A077K814	Ralstonia_phage	60.8	5.3e-96
AXM30396.1|431543_431807_+	xanthomonadin biosynthesis protein	NA	NA	NA	NA	NA
432149:432168	attL	AGTCGCCCCTGAAAAACCCC	NA	NA	NA	NA
AXM27375.1|433629_434505_+|integrase	integron integrase	integrase	A0A1P8DJJ6	Virus_Rctr41k	48.5	5.3e-56
AXM27376.1|434735_436574_-	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
AXM30397.1|436748_437015_+	YkgJ family cysteine cluster protein	NA	NA	NA	NA	NA
AXM27377.1|437040_437586_-	gamma carbonic anhydrase family protein	NA	NA	NA	NA	NA
AXM30398.1|437936_438971_-|transposase	IS630 family transposase	transposase	S5VXX4	Leptospira_phage	32.8	8.0e-43
AXM27378.1|441055_442363_+	MFS transporter	NA	NA	NA	NA	NA
AXM27379.1|442501_443761_+	HD-GYP domain-containing protein	NA	NA	NA	NA	NA
AXM27380.1|444189_444723_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AXM27381.1|444733_446110_-|transposase	IS5 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	55.1	5.0e-77
446208:446227	attR	GGGGTTTTTCAGGGGCGACT	NA	NA	NA	NA
>prophage 4
CP031458	Xanthomonas oryzae pv. oryzae strain JL28 chromosome, complete genome	4697691	458977	517493	4697691	tRNA,transposase	Acinetobacter_phage(30.0%)	48	NA	NA
AXM27393.1|458977_459454_+|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	tRNA	NA	NA	NA	NA
AXM27394.1|459795_461019_-	MFS transporter	NA	NA	NA	NA	NA
AXM27395.1|461123_461735_-	hypothetical protein	NA	NA	NA	NA	NA
AXM27396.1|461836_462586_-	hypothetical protein	NA	NA	NA	NA	NA
AXM27397.1|462776_464123_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
AXM27398.1|464107_465550_-	sensor histidine kinase	NA	NA	NA	NA	NA
AXM27399.1|465599_467327_-	ubiquinone-dependent pyruvate dehydrogenase	NA	NA	NA	NA	NA
AXM27400.1|467684_468281_+	Ax21 family protein	NA	NA	NA	NA	NA
AXM27401.1|468603_469629_-	NAD(P)-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
AXM27402.1|469644_470160_-	protein-export chaperone SecB	NA	NA	NA	NA	NA
AXM27403.1|470269_470704_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
AXM27404.1|470779_471202_-	hypothetical protein	NA	NA	NA	NA	NA
AXM30399.1|471230_471701_-	thioesterase	NA	NA	NA	NA	NA
AXM27405.1|472163_473129_+|transposase	IS1595 family transposase	transposase	NA	NA	NA	NA
AXM27406.1|473547_474513_+|transposase	IS1595 family transposase	transposase	NA	NA	NA	NA
AXM27407.1|474841_475123_-	hypothetical protein	NA	NA	NA	NA	NA
AXM27408.1|475038_475248_-	hypothetical protein	NA	NA	NA	NA	NA
AXM27409.1|475257_476625_+	VOC family protein	NA	NA	NA	NA	NA
AXM27410.1|476914_480055_-	AcrB/AcrD/AcrF family protein	NA	NA	NA	NA	NA
AXM27411.1|480188_483437_-	acriflavine resistance protein B	NA	NA	NA	NA	NA
AXM27412.1|483529_484774_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AXM27413.1|485033_486350_+	amidohydrolase	NA	NA	NA	NA	NA
AXM27414.1|487108_487924_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	35.8	7.4e-36
AXM27415.1|488391_489576_+|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	44.8	5.0e-41
AXM27416.1|489768_490740_-|transposase	IS30 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	34.9	7.2e-38
AXM27417.1|490906_491875_+|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	59.7	5.6e-99
AXM27418.1|492859_493657_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
AXM27419.1|495865_497242_-|transposase	IS5 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	55.8	1.4e-79
AXM30400.1|497390_499103_-	hypothetical protein	NA	NA	NA	NA	NA
AXM27420.1|499292_501524_+	NADP-dependent isocitrate dehydrogenase	NA	NA	NA	NA	NA
AXM27421.1|502127_503230_-|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	40.5	1.1e-39
AXM27422.1|504657_505239_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	59.3	3.2e-65
AXM27423.1|505235_505394_+	molybdopterin biosynthesis protein	NA	NA	NA	NA	NA
AXM27424.1|505390_506020_+	flavin reductase family protein	NA	NA	NA	NA	NA
AXM27425.1|506137_507175_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	44.1	7.2e-76
AXM27426.1|507311_508109_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	52.9	7.5e-65
AXM27427.1|508101_508818_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
AXM27428.1|509138_509831_-	cAMP-activated global transcriptional regulator CRP	NA	NA	NA	NA	NA
AXM27429.1|509968_510763_+	S-adenosylmethionine decarboxylase proenzyme	NA	NA	NA	NA	NA
AXM27430.1|510922_511237_+	QacE family quaternary ammonium compound efflux SMR transporter	NA	NA	NA	NA	NA
AXM30401.1|511518_512172_-	demethoxyubiquinone hydroxylase family protein	NA	NA	NA	NA	NA
AXM27431.1|512357_512786_+	50S ribosomal protein L13	NA	NA	NA	NA	NA
AXM27432.1|512789_513182_+	30S ribosomal protein S9	NA	NA	NA	NA	NA
AXM27433.1|513730_514348_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
AXM30402.1|514428_514644_+	bacterioferritin	NA	NA	NA	NA	NA
AXM27434.1|514986_515457_+	bacterioferritin	NA	NA	NA	NA	NA
AXM27435.1|515469_516435_-|transposase	IS1595 family transposase	transposase	NA	NA	NA	NA
AXM27436.1|516513_517493_-|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	41.4	1.9e-38
>prophage 5
CP031458	Xanthomonas oryzae pv. oryzae strain JL28 chromosome, complete genome	4697691	540457	582165	4697691	tRNA,transposase	Moraxella_phage(50.0%)	39	NA	NA
AXM27456.1|540457_541522_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	57.1	8.6e-101
AXM27457.1|541600_541957_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
AXM27458.1|542184_544356_+	beta-glucosidase	NA	NA	NA	NA	NA
AXM27459.1|546689_547652_-|transposase	IS1595 family transposase	transposase	NA	NA	NA	NA
AXM27460.1|548285_548612_-	hypothetical protein	NA	NA	NA	NA	NA
AXM27461.1|548647_549826_-	PQQ-dependent sugar dehydrogenase	NA	NA	NA	NA	NA
AXM27462.1|550000_550435_+	hypothetical protein	NA	NA	NA	NA	NA
AXM27463.1|550995_551277_-	hypothetical protein	NA	NA	NA	NA	NA
AXM27464.1|551870_553106_-|transposase	ISL3-like element ISXoo13 family transposase	transposase	NA	NA	NA	NA
AXM27465.1|553622_554939_-	amino acid permease	NA	NA	NA	NA	NA
AXM27466.1|554935_555712_-	hypothetical protein	NA	NA	NA	NA	NA
AXM27467.1|555993_556756_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
AXM27468.1|557204_558167_-|transposase	IS1595-like element ISXo2 family transposase	transposase	NA	NA	NA	NA
AXM27469.1|558386_559184_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
AXM27470.1|559238_560036_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
AXM27471.1|560191_561289_-	dipeptide epimerase	NA	NA	NA	NA	NA
AXM30404.1|561285_562698_-	NlpC-P60 family protein	NA	NA	NA	NA	NA
AXM27472.1|562921_563728_+	N-acetylmuramoyl-L-alanine amidase	NA	NA	NA	NA	NA
AXM27473.1|563820_564567_+	D-alanyl-D-alanine dipeptidase	NA	NA	NA	NA	NA
AXM30405.1|564873_565071_+	CPXCG motif-containing cysteine-rich protein	NA	NA	NA	NA	NA
AXM27474.1|565281_565659_+	hypothetical protein	NA	NA	NA	NA	NA
AXM30406.1|565884_566226_+	EF-hand domain-containing protein	NA	NA	NA	NA	NA
AXM27475.1|566293_566518_-	hypothetical protein	NA	NA	NA	NA	NA
AXM27476.1|566432_566873_+	EF-hand domain-containing protein	NA	NA	NA	NA	NA
AXM27477.1|566910_567663_+	HAD family hydrolase	NA	NA	NA	NA	NA
AXM27478.1|567788_568757_-|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	60.0	4.3e-99
AXM27479.1|568906_570226_-|transposase	IS701 family transposase	transposase	NA	NA	NA	NA
AXM27480.1|570437_571013_+	hypothetical protein	NA	NA	NA	NA	NA
AXM30407.1|571107_571755_+	hypothetical protein	NA	NA	NA	NA	NA
AXM27481.1|571797_572595_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
AXM27482.1|572603_573413_-	glycosyl transferase	NA	NA	NA	NA	NA
AXM27483.1|573588_574392_+	uroporphyrinogen-III synthase	NA	NA	NA	NA	NA
AXM27484.1|574495_575473_+	hypothetical protein	NA	NA	NA	NA	NA
AXM27485.1|575469_576735_+	heme biosynthesis protein HemY	NA	NA	NA	NA	NA
AXM30408.1|577160_577724_-	hypothetical protein	NA	NA	NA	NA	NA
AXM27486.1|577814_579110_-	acetyl-CoA C-acetyltransferase	NA	NA	NA	NA	NA
AXM27487.1|579178_580084_+	hypothetical protein	NA	NA	NA	NA	NA
AXM27488.1|580286_580667_-	peptide-binding protein	NA	NA	NA	NA	NA
AXM27489.1|581199_582165_-|transposase	IS1595 family transposase	transposase	NA	NA	NA	NA
>prophage 6
CP031458	Xanthomonas oryzae pv. oryzae strain JL28 chromosome, complete genome	4697691	711035	806149	4697691	tRNA,transposase	Ralstonia_phage(17.65%)	66	NA	NA
AXM27568.1|711035_711998_-|transposase	IS1595-like element ISXo2 family transposase	transposase	NA	NA	NA	NA
AXM27569.1|712074_712293_+	hypothetical protein	NA	NA	NA	NA	NA
AXM27570.1|712292_713567_+	DUF3380 domain-containing protein	NA	B3FJ91	Pseudomonas_phage	33.7	1.2e-21
AXM27571.1|715306_716446_+	lytic murein transglycosylase B	NA	NA	NA	NA	NA
AXM27572.1|716442_717858_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	50.6	4.3e-15
AXM27573.1|717968_718250_-	hypothetical protein	NA	NA	NA	NA	NA
AXM27574.1|718358_719564_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.9	4.6e-66
AXM27575.1|720629_720908_+	DUF493 family protein	NA	NA	NA	NA	NA
AXM27576.1|720895_721594_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
AXM27577.1|721608_722622_+	lipoyl synthase	NA	NA	NA	NA	NA
AXM27578.1|722866_724678_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AXM27579.1|724773_725769_+	restriction endonuclease	NA	NA	NA	NA	NA
AXM27580.1|726267_728451_+	PDZ domain-containing protein	NA	A0A0R6PIZ1	Moraxella_phage	31.4	1.8e-81
AXM27581.1|728742_729609_-	endonuclease	NA	NA	NA	NA	NA
AXM27582.1|729770_730826_+	bifunctional nicotinamide-nucleotide adenylyltransferase/Nudix hydroxylase	NA	A0A1B0V161	Roseobacter_phage	47.1	1.7e-80
AXM27583.1|730948_732352_+	nicotinate phosphoribosyltransferase	NA	A0A218M332	Acidovorax_phage	52.1	1.2e-131
AXM27584.1|734600_735362_+	DUF2242 domain-containing protein	NA	NA	NA	NA	NA
AXM27585.1|735486_735867_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
AXM27586.1|736038_737376_+	hypothetical protein	NA	NA	NA	NA	NA
AXM27587.1|737396_738338_+	decarboxylating 6-phosphogluconate dehydrogenase	NA	M4SJX8	Cyanophage	44.9	5.9e-69
AXM27588.1|738677_739730_-	oxidoreductase	NA	NA	NA	NA	NA
AXM30421.1|739889_740252_+	BON domain-containing protein	NA	NA	NA	NA	NA
AXM27589.1|740537_742349_+	PAS domain S-box protein	NA	A0A2K9L0Z8	Tupanvirus	28.3	3.5e-09
AXM27590.1|742345_742786_+	response regulator	NA	NA	NA	NA	NA
AXM27591.1|742789_744292_+	hybrid sensor histidine kinase/response regulator	NA	A0A2K9L5I4	Tupanvirus	26.2	1.1e-08
AXM27592.1|744383_744899_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
AXM27593.1|745067_745805_-	pteridine reductase	NA	NA	NA	NA	NA
AXM30422.1|745872_747057_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AXM27594.1|748492_749728_+|transposase	ISL3-like element ISXoo13 family transposase	transposase	NA	NA	NA	NA
AXM27595.1|750218_751175_+|transposase	IS30-like element IS1112a family transposase	transposase	Q9MBM9	Staphylococcus_prophage	35.2	1.6e-42
AXM27596.1|751456_754147_+	TonB-dependent receptor	NA	NA	NA	NA	NA
AXM27597.1|754297_757195_+	glycoside hydrolase family 2 protein	NA	L0N6M2	Herpes_simplex_virus	25.2	8.8e-23
AXM27598.1|757191_759588_+	alpha-N-acetylglucosaminidase	NA	NA	NA	NA	NA
AXM27599.1|759721_760888_+	DUF1624 domain-containing protein	NA	NA	NA	NA	NA
AXM27600.1|761102_761870_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AXM27601.1|761914_763192_+	glucose/galactose MFS transporter	NA	NA	NA	NA	NA
AXM27602.1|763232_764309_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
AXM27603.1|764305_765334_+	SIS domain-containing protein	NA	NA	NA	NA	NA
AXM27604.1|765336_766491_+	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA	NA
AXM27605.1|766910_767516_-	poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD	NA	NA	NA	NA	NA
AXM27606.1|767512_768766_-	poly-beta-1,6 N-acetyl-D-glucosamine synthase	NA	NA	NA	NA	NA
AXM27607.1|768767_770666_-	poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB	NA	NA	NA	NA	NA
AXM27608.1|770667_772710_-	poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA	NA	NA	NA	NA	NA
AXM27609.1|773334_773565_+	hypothetical protein	NA	NA	NA	NA	NA
AXM27610.1|774026_774992_-|transposase	IS1595-like element ISXo5 family transposase	transposase	NA	NA	NA	NA
AXM27611.1|778401_779165_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
AXM27612.1|779500_780469_+|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	60.0	4.3e-99
AXM27613.1|780680_781637_+|transposase	IS30 family transposase IS1112a	transposase	Q9MBM9	Staphylococcus_prophage	35.2	2.1e-42
AXM27614.1|781812_782775_+|transposase	IS1595 family transposase	transposase	NA	NA	NA	NA
AXM30423.1|782814_784047_-|tRNA	multifunctional CCA tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase	tRNA	K4IEX3	Salmonella_phage	41.7	2.0e-72
AXM27615.1|785693_786491_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
AXM27616.1|787423_787690_-|transposase	transposase	transposase	NA	NA	NA	NA
AXM27617.1|788423_789392_-|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	60.0	4.3e-99
AXM27618.1|789464_790228_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
AXM27619.1|790420_792994_-	pyridoxal-phosphate dependent enzyme	NA	NA	NA	NA	NA
AXM27620.1|793116_794112_-|transposase	IS5 family transposase	transposase	A0A077K814	Ralstonia_phage	61.0	5.4e-97
AXM30424.1|796040_796778_-	EEP domain-containing protein	NA	NA	NA	NA	NA
AXM27621.1|796827_797643_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
AXM27622.1|797734_798385_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
AXM30425.1|798478_799219_-	cytochrome c4	NA	NA	NA	NA	NA
AXM27623.1|799420_800044_+	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA	NA
AXM30426.1|800990_801686_-	VIT family protein	NA	NA	NA	NA	NA
AXM27624.1|801901_803266_+	glutamate--cysteine ligase	NA	NA	NA	NA	NA
AXM27625.1|803452_804112_-	histidine kinase	NA	W8CYF6	Bacillus_phage	23.4	7.1e-13
AXM27626.1|804116_804344_-	HAMP domain-containing protein	NA	NA	NA	NA	NA
AXM30427.1|804541_806149_+|transposase	IS701 family transposase	transposase	NA	NA	NA	NA
>prophage 7
CP031458	Xanthomonas oryzae pv. oryzae strain JL28 chromosome, complete genome	4697691	1113706	1124537	4697691	transposase	Burkholderia_phage(28.57%)	9	NA	NA
AXM27883.1|1113706_1114663_+|transposase	IS30 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	35.3	1.8e-41
AXM27884.1|1116063_1117149_-	DUF3396 domain-containing protein	NA	E5E3X8	Burkholderia_phage	37.9	4.0e-61
AXM27885.1|1117145_1118216_-	DUF3396 domain-containing protein	NA	E5E3X8	Burkholderia_phage	36.6	5.7e-60
AXM27886.1|1118223_1118919_-	VRR-NUC domain-containing protein	NA	Q8W6S1	Burkholderia_virus	46.1	2.2e-36
AXM27887.1|1118915_1119365_-	PAAR domain-containing protein	NA	A4JWV5	Burkholderia_virus	34.1	3.3e-09
AXM27888.1|1119452_1119635_-	hypothetical protein	NA	NA	NA	NA	NA
AXM30452.1|1119694_1122649_-	glycine dehydrogenase (aminomethyl-transferring)	NA	M4QFZ1	Prochlorococcus_phage	49.9	5.3e-257
AXM27889.1|1123120_1123303_-	hypothetical protein	NA	NA	NA	NA	NA
AXM30453.1|1123733_1124537_+	sulfotransferase	NA	M4QPS9	Synechococcus_phage	27.7	9.0e-26
>prophage 8
CP031458	Xanthomonas oryzae pv. oryzae strain JL28 chromosome, complete genome	4697691	1173926	1221580	4697691	plate,transposase	uncultured_Caudovirales_phage(40.0%)	32	NA	NA
AXM27927.1|1173926_1174895_-|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	60.3	8.7e-100
AXM27928.1|1175803_1176487_+	hypothetical protein	NA	NA	NA	NA	NA
AXM30459.1|1176553_1178479_+	type VI secretion system tip protein VgrG	NA	A0A2H4JCD4	uncultured_Caudovirales_phage	30.8	1.5e-34
AXM27929.1|1178475_1179300_+	DUF4123 domain-containing protein	NA	NA	NA	NA	NA
AXM27930.1|1179292_1179889_+	DUF3304 domain-containing protein	NA	NA	NA	NA	NA
AXM27931.1|1179888_1182120_+	DUF2235 domain-containing protein	NA	NA	NA	NA	NA
AXM27932.1|1182100_1182490_+	DUF2345 domain-containing protein	NA	NA	NA	NA	NA
AXM27933.1|1185053_1186031_-	hypothetical protein	NA	NA	NA	NA	NA
AXM27934.1|1186027_1188745_-	type VI secretion system tip protein VgrG	NA	NA	NA	NA	NA
AXM27935.1|1188755_1189544_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA	NA
AXM27936.1|1189543_1190878_-|plate	type VI secretion system baseplate subunit TssK	plate	NA	NA	NA	NA
AXM27937.1|1191029_1191638_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA	NA
AXM27938.1|1192024_1192513_+	hypothetical protein	NA	NA	NA	NA	NA
AXM27939.1|1192559_1193060_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA	NA
AXM27940.1|1193063_1194560_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA	NA
AXM27941.1|1194701_1195199_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA	NA
AXM27942.1|1195346_1195835_+|plate	type VI secretion system baseplate subunit TssE	plate	NA	NA	NA	NA
AXM27943.1|1195837_1197673_+|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
AXM27944.1|1197636_1198728_+|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
AXM27945.1|1198813_1201543_+	type VI secretion system ATPase TssH	NA	A0A223W0B1	Agrobacterium_phage	29.6	7.1e-91
AXM27946.1|1201573_1201927_+	hypothetical protein	NA	NA	NA	NA	NA
AXM27947.1|1202019_1204782_+	type VI secretion system tip protein VgrG	NA	A0A2H4JCD4	uncultured_Caudovirales_phage	27.4	9.6e-43
AXM27948.1|1204723_1205629_+	DUF4123 domain-containing protein	NA	NA	NA	NA	NA
AXM27949.1|1205647_1208515_+	hypothetical protein	NA	NA	NA	NA	NA
AXM27950.1|1208518_1209544_+	hypothetical protein	NA	NA	NA	NA	NA
AXM27951.1|1211508_1212531_+	hypothetical protein	NA	NA	NA	NA	NA
AXM27952.1|1212442_1214386_+	hypothetical protein	NA	NA	NA	NA	NA
AXM27953.1|1214390_1215410_+	hypothetical protein	NA	NA	NA	NA	NA
AXM27954.1|1215321_1217259_+	hypothetical protein	NA	NA	NA	NA	NA
AXM27955.1|1217267_1218299_+	hypothetical protein	NA	NA	NA	NA	NA
AXM27956.1|1218210_1220649_+	hypothetical protein	NA	NA	NA	NA	NA
AXM27957.1|1220623_1221580_-|transposase	IS30 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	35.2	4.8e-42
>prophage 9
CP031458	Xanthomonas oryzae pv. oryzae strain JL28 chromosome, complete genome	4697691	1237844	1282420	4697691	protease,transposase	Ralstonia_phage(50.0%)	35	NA	NA
AXM27968.1|1237844_1238813_-|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	60.0	1.5e-99
AXM27969.1|1238815_1239106_+	restriction endonuclease subunit S	NA	NA	NA	NA	NA
AXM27970.1|1239220_1240189_-|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	60.0	8.7e-100
AXM27971.1|1240653_1240848_+	type I restriction endonuclease subunit S	NA	NA	NA	NA	NA
AXM27972.1|1240844_1241591_+	hypothetical protein	NA	NA	NA	NA	NA
AXM27973.1|1241590_1242265_+	hypothetical protein	NA	NA	NA	NA	NA
AXM27974.1|1242348_1243668_-|transposase	IS701 family transposase	transposase	NA	NA	NA	NA
AXM27975.1|1243867_1244836_-|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	60.3	8.7e-100
AXM27976.1|1244901_1248081_+	type I restriction endonuclease subunit R	NA	A0A220A398	Liberibacter_phage	30.3	1.2e-73
AXM30463.1|1248359_1248626_+	hypothetical protein	NA	NA	NA	NA	NA
AXM27977.1|1248874_1250449_-	serine/threonine protein kinase	NA	NA	NA	NA	NA
AXM27978.1|1250618_1250861_+	hypothetical protein	NA	NA	NA	NA	NA
AXM30464.1|1250857_1251634_+	hypothetical protein	NA	NA	NA	NA	NA
AXM27979.1|1251962_1252718_+	hypothetical protein	NA	NA	NA	NA	NA
AXM27980.1|1252778_1253408_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AXM27981.1|1253622_1254402_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
AXM27982.1|1255478_1256277_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
AXM27983.1|1256768_1257194_-	type II toxin-antitoxin system death-on-curing family toxin	NA	A0A1B3AYM0	Gordonia_phage	48.5	5.8e-08
AXM27984.1|1257203_1257425_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA	NA
AXM27985.1|1257574_1258180_+	repressor LexA	NA	A0A1W6JNS2	Morganella_phage	39.2	8.6e-13
AXM30466.1|1258229_1258832_+	translesion DNA synthesis-associated protein ImuA	NA	NA	NA	NA	NA
AXM27986.1|1258841_1260260_+	DNA polymerase Y family protein	NA	NA	NA	NA	NA
AXM30467.1|1260272_1260455_+	hypothetical protein	NA	NA	NA	NA	NA
AXM30465.1|1260495_1263693_+	error-prone DNA polymerase	NA	A0A1B1PA77	Streptomyces_phage	24.8	6.0e-81
AXM30468.1|1264003_1264822_+	HDOD domain-containing protein	NA	NA	NA	NA	NA
AXM27987.1|1264934_1266332_-|protease	serine protease	protease	NA	NA	NA	NA
AXM27988.1|1266760_1268731_+	oligopeptide transporter, OPT family	NA	NA	NA	NA	NA
AXM27989.1|1269055_1270024_+|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	60.0	4.3e-99
AXM27990.1|1270396_1270759_-	hypothetical protein	NA	NA	NA	NA	NA
AXM27991.1|1271015_1271861_+	transporter	NA	NA	NA	NA	NA
AXM30469.1|1272127_1274248_+	S9 family peptidase	NA	NA	NA	NA	NA
AXM27992.1|1277694_1278156_+	hypothetical protein	NA	NA	NA	NA	NA
AXM27993.1|1278287_1279013_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AXM30470.1|1279396_1280431_-|transposase	IS630 family transposase	transposase	S5VXX4	Leptospira_phage	32.8	8.0e-43
AXM27994.1|1281451_1282420_-|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	59.7	5.6e-99
>prophage 10
CP031458	Xanthomonas oryzae pv. oryzae strain JL28 chromosome, complete genome	4697691	1329870	1378572	4697691	tRNA,integrase,transposase	Ralstonia_phage(33.33%)	41	1338421:1338480	1355091:1355754
AXM28024.1|1329870_1330836_+|transposase	IS1595-like element ISXo5 family transposase	transposase	NA	NA	NA	NA
AXM30472.1|1331530_1331668_+	acetyltransferase	NA	NA	NA	NA	NA
AXM28025.1|1332183_1333095_+	RNA methyltransferase	NA	NA	NA	NA	NA
AXM28026.1|1336168_1336931_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
AXM28027.1|1337063_1337486_-	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
AXM28028.1|1337546_1338260_-	FAA hydrolase family protein	NA	NA	NA	NA	NA
1338421:1338480	attL	GGGCAGTCTCAAGATTCAAGTGCAACACGTGATTTGAGTGCTGCGATTTCTTCCTCCATT	NA	NA	NA	NA
AXM28029.1|1341306_1341582_-	hypothetical protein	NA	NA	NA	NA	NA
AXM30473.1|1341841_1342183_+	Rieske (2Fe-2S) protein	NA	NA	NA	NA	NA
AXM28030.1|1342240_1344103_-	SLC13 family permease	NA	NA	NA	NA	NA
AXM28031.1|1344178_1344937_-|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	tRNA	NA	NA	NA	NA
AXM28032.1|1344952_1345246_-	hypothetical protein	NA	NA	NA	NA	NA
AXM28033.1|1345238_1346033_-	thiazole synthase	NA	NA	NA	NA	NA
AXM28034.1|1346568_1346769_-	sulfur carrier protein ThiS	NA	NA	NA	NA	NA
AXM28035.1|1346959_1348744_+	autotransporter domain-containing esterase	NA	NA	NA	NA	NA
AXM28036.1|1349008_1349233_-	hypothetical protein	NA	NA	NA	NA	NA
AXM30474.1|1350460_1350880_-|integrase	integrase	integrase	C8CLF4	Xylella_phage	65.2	5.1e-41
AXM28037.1|1353218_1353611_+	hypothetical protein	NA	NA	NA	NA	NA
AXM28038.1|1353701_1354094_+	histone-like nucleoid-structuring protein	NA	NA	NA	NA	NA
AXM28039.1|1354126_1354925_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
AXM28040.1|1355796_1356559_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
1355091:1355754	attR	GGGCAGTCTCAAGATTCAAGTGCAACACGTGATTTGAGTGCTGCGATTTCTTCCTCCATTGCCTCGCTTGGTGTCTTCCATCCGAGCGTCTGACGAGGGCGGGTATTCATCAGCAGTGCGATGTGATTGAGATACTCTTGGCTGACAGTGGACAGGTCGGCGCCCTTGGGCAGGAATTGGCGCAGCAGGCCGTTGGTGTTCTCGTTACTTCCCCGCTGCCACGGCGCATGTGGATCAGCGAACCACACGTCGATGTTCAATCCTTGCATCAGCTCGGCGTAGCACGTGAGCTCGGTACCGCGATCGTAGGTCAGACTTGTCCGCATTGAGGCCGGCAGTTTCTTCATTTGCCGGGTAAACCCTTCCAGCGCATCTGCGGCCGTGCAGCCATCCATGCGGCACAGCACGACAAAGCGCGTCTTGCGTTCCACCAACGTGCCCACGCAAGAACGATTGAATGCGCCCTTGATCAAGTCGCCTTCCCAATGACCTGGGACCAAGCGCGTCTGCACTTCTTCGGGGCGATGCACAATCCGCAACTCCTCCGGCACCCAGCTGCGTGTGGCCGCCGTTGTACGCCGTCATCCGCGTTTGGGCTTGTGCTGACGCAGGGCCTGGACCAGTTCCTTCTTCAAGCCCCCACGCGGATGCGCGTAGATGCTAG	NA	NA	NA	NA
AXM28041.1|1356556_1356970_-|transposase	IS30 family transposase	transposase	NA	NA	NA	NA
AXM28042.1|1356935_1357901_-|transposase	IS1595-like element ISXo5 family transposase	transposase	NA	NA	NA	NA
AXM28043.1|1358045_1359014_+|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	60.0	4.3e-99
AXM28044.1|1359205_1360174_+|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	60.0	8.7e-100
AXM28045.1|1360724_1362857_-	glycogen debranching enzyme GlgX	NA	NA	NA	NA	NA
AXM28046.1|1363158_1363922_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
AXM28047.1|1364162_1365128_+|transposase	IS1595 family transposase	transposase	NA	NA	NA	NA
AXM28048.1|1365124_1365652_-	hypothetical protein	NA	NA	NA	NA	NA
AXM28049.1|1365797_1367012_+|transposase	IS4-like element ISXo14 family transposase	transposase	A0A0F7LAS3	uncultured_marine_virus	33.4	1.1e-54
AXM28050.1|1367099_1368419_+|transposase	IS701 family transposase	transposase	NA	NA	NA	NA
AXM28051.1|1368509_1368701_+	hypothetical protein	NA	NA	NA	NA	NA
AXM28052.1|1368668_1369682_-	peptidylprolyl isomerase	NA	NA	NA	NA	NA
AXM28053.1|1369715_1369949_-	DUF378 domain-containing protein	NA	NA	NA	NA	NA
AXM28054.1|1370422_1370716_-	hypothetical protein	NA	NA	NA	NA	NA
AXM28055.1|1371080_1371269_+	hypothetical protein	NA	NA	NA	NA	NA
AXM28056.1|1371325_1372089_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
AXM28057.1|1372213_1373179_+|transposase	IS1595-like element ISXo5 family transposase	transposase	NA	NA	NA	NA
AXM28058.1|1373478_1373928_-	DUF4442 domain-containing protein	NA	NA	NA	NA	NA
AXM28059.1|1374183_1375041_-	thioredoxin	NA	A0A1J0GW78	Streptomyces_phage	41.8	1.3e-11
AXM28060.1|1375245_1375857_+	DUF998 domain-containing protein	NA	NA	NA	NA	NA
AXM28061.1|1375929_1378572_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.7	2.7e-172
>prophage 11
CP031458	Xanthomonas oryzae pv. oryzae strain JL28 chromosome, complete genome	4697691	1397672	1457984	4697691	protease,tRNA,transposase	Clostridium_phage(14.29%)	51	NA	NA
AXM28074.1|1397672_1399118_+|protease	metalloprotease TldD	protease	NA	NA	NA	NA
AXM28075.1|1399374_1399956_-	ribosome-associated protein	NA	NA	NA	NA	NA
AXM30475.1|1400101_1401469_+|protease	metalloprotease PmbA	protease	NA	NA	NA	NA
AXM28076.1|1401465_1401786_+	hypothetical protein	NA	NA	NA	NA	NA
AXM28077.1|1401758_1401947_+	hypothetical protein	NA	NA	NA	NA	NA
AXM30476.1|1401998_1402463_+	DUF4870 domain-containing protein	NA	NA	NA	NA	NA
AXM28078.1|1404297_1405173_-	polyprenyl synthetase family protein	NA	NA	NA	NA	NA
AXM28079.1|1405174_1405435_-	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA	NA
AXM28080.1|1405466_1406771_-|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	NA	NA	NA	NA
AXM28081.1|1406804_1408511_-	alkaline phosphatase	NA	NA	NA	NA	NA
AXM28082.1|1408654_1409974_+	dicarboxylate/amino acid:cation symporter	NA	NA	NA	NA	NA
AXM28083.1|1411087_1411579_+	acyl-CoA thioesterase	NA	NA	NA	NA	NA
AXM28084.1|1411786_1412536_-	NlpC/P60 family protein	NA	A0A0K2SUC1	Clostridium_phage	38.5	1.2e-19
AXM30477.1|1412645_1413182_-	NlpC/P60 family protein	NA	A0A1V0DZX6	Clostridioides_phage	40.5	3.2e-19
AXM28085.1|1413292_1413772_+	peptidylprolyl isomerase	NA	NA	NA	NA	NA
AXM28086.1|1413999_1415244_+	DUF418 domain-containing protein	NA	NA	NA	NA	NA
AXM28087.1|1415251_1416502_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AXM28088.1|1417785_1418748_+|transposase	IS1595 family transposase	transposase	NA	NA	NA	NA
AXM28089.1|1419185_1419593_+	cysteine methyltransferase	NA	NA	NA	NA	NA
AXM28090.1|1419633_1420332_+|protease	rhomboid family intramembrane serine protease	protease	NA	NA	NA	NA
AXM28091.1|1420602_1422618_-	M13 family peptidase	NA	NA	NA	NA	NA
AXM28092.1|1424005_1424857_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
AXM28093.1|1424949_1425519_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	70.1	2.6e-72
AXM28094.1|1425553_1425739_-	hypothetical protein	NA	NA	NA	NA	NA
AXM28095.1|1426390_1426558_-	hypothetical protein	NA	NA	NA	NA	NA
AXM28096.1|1426585_1427020_-	HIT family protein	NA	NA	NA	NA	NA
AXM28097.1|1427016_1427592_-	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
AXM28098.1|1427854_1429255_+	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA	NA
AXM30478.1|1429376_1429883_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
AXM28099.1|1430044_1430281_+	hypothetical protein	NA	NA	NA	NA	NA
AXM28100.1|1430241_1431459_+|protease	rhomboid family intramembrane serine protease	protease	NA	NA	NA	NA
AXM30479.1|1432776_1432962_-	hypothetical protein	NA	NA	NA	NA	NA
AXM28101.1|1432881_1434465_+	LysM peptidoglycan-binding domain-containing protein	NA	A0A2H4J9N7	uncultured_Caudovirales_phage	31.5	4.2e-11
AXM28102.1|1435015_1435864_-	phosphatidylserine decarboxylase proenzyme	NA	NA	NA	NA	NA
AXM28103.1|1435860_1436511_-	SCO family protein	NA	NA	NA	NA	NA
AXM28104.1|1436591_1437518_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
AXM28105.1|1437528_1438632_+	chorismate synthase	NA	A0A291AU41	Pandoravirus	40.4	1.6e-73
AXM28106.1|1438624_1439698_+	D-glycerate dehydrogenase	NA	M1HTA3	Paramecium_bursaria_Chlorella_virus	23.2	2.1e-14
AXM28107.1|1439782_1440808_+	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AXM30480.1|1441374_1443441_+	ferrous iron transporter B	NA	NA	NA	NA	NA
AXM28108.1|1444014_1444788_+|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
AXM28109.1|1444784_1445453_+	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
AXM28110.1|1445795_1446764_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	24.1	3.2e-09
AXM28111.1|1446869_1448087_+	tryptophan synthase subunit beta	NA	NA	NA	NA	NA
AXM28112.1|1448532_1449339_+	tryptophan synthase subunit alpha	NA	NA	NA	NA	NA
AXM28113.1|1449656_1450544_+	acetyl-CoA carboxylase carboxyl transferase subunit beta	NA	NA	NA	NA	NA
AXM28114.1|1450540_1451890_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
AXM28115.1|1452012_1452951_+	isopenicillin N synthase family oxygenase	NA	NA	NA	NA	NA
AXM30481.1|1453160_1453835_+	methylamine utilization protein	NA	NA	NA	NA	NA
AXM28116.1|1453831_1456198_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
AXM28117.1|1457221_1457984_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
>prophage 12
CP031458	Xanthomonas oryzae pv. oryzae strain JL28 chromosome, complete genome	4697691	1534532	1673624	4697691	plate,transposase	Ralstonia_phage(54.55%)	96	NA	NA
AXM30490.1|1534532_1535615_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
AXM30491.1|1538405_1538942_-	hypothetical protein	NA	A0A2I2L3Z7	Orpheovirus	33.8	4.0e-14
AXM28177.1|1540448_1541480_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
AXM28178.1|1542068_1542389_-	hypothetical protein	NA	NA	NA	NA	NA
AXM28179.1|1542723_1543323_+	transcriptional regulator	NA	NA	NA	NA	NA
AXM28180.1|1543319_1544243_+	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA	NA
AXM30492.1|1544322_1544532_-	hypothetical protein	NA	NA	NA	NA	NA
AXM28181.1|1545258_1545501_+	hypothetical protein	NA	NA	NA	NA	NA
AXM28182.1|1547012_1547501_+	hypothetical protein	NA	NA	NA	NA	NA
AXM28183.1|1550413_1552036_+	PAS domain-containing protein	NA	NA	NA	NA	NA
AXM28184.1|1552400_1552679_-	Fe(2+)-trafficking protein	NA	NA	NA	NA	NA
AXM28185.1|1552702_1553776_-	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
AXM28186.1|1554254_1555871_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
AXM28187.1|1556075_1556792_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AXM28188.1|1556949_1557888_+	hydroxyproline-2-epimerase	NA	NA	NA	NA	NA
AXM28189.1|1557887_1559150_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
AXM28190.1|1559146_1559392_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
AXM28191.1|1559363_1560698_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AXM28192.1|1560694_1561603_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
AXM28193.1|1561813_1563430_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
AXM28194.1|1563426_1564626_+	aminopeptidase P family protein	NA	NA	NA	NA	NA
AXM28195.1|1564743_1566576_+	DUF885 family protein	NA	NA	NA	NA	NA
AXM28196.1|1566572_1568438_+	DUF885 family protein	NA	NA	NA	NA	NA
AXM30493.1|1568500_1570087_+	amino acid permease	NA	NA	NA	NA	NA
AXM28197.1|1570076_1572416_+	S9 family peptidase	NA	NA	NA	NA	NA
AXM28198.1|1572412_1572700_+	hypothetical protein	NA	NA	NA	NA	NA
AXM28199.1|1572913_1573153_+	hypothetical protein	NA	NA	NA	NA	NA
AXM28200.1|1573194_1573785_+	hypothetical protein	NA	NA	NA	NA	NA
AXM28201.1|1573788_1574133_+	hypothetical protein	NA	NA	NA	NA	NA
AXM28202.1|1574129_1574426_+	hypothetical protein	NA	NA	NA	NA	NA
AXM28203.1|1574632_1576204_-	peptidase S53	NA	A0A1V0SLL0	Klosneuvirus	37.4	5.2e-70
AXM28204.1|1576667_1579025_+	Tat pathway signal protein	NA	NA	NA	NA	NA
AXM28205.1|1579525_1582363_+	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	26.1	3.2e-49
AXM28206.1|1582601_1586966_+	carbohydrate-binding protein	NA	NA	NA	NA	NA
AXM28207.1|1586962_1588549_+	glycosyl hydrolase family 43	NA	NA	NA	NA	NA
AXM28208.1|1588870_1591216_+	S9 family peptidase	NA	NA	NA	NA	NA
AXM28209.1|1591255_1591468_+	hypothetical protein	NA	NA	NA	NA	NA
AXM28210.1|1596064_1598440_+	glycoside hydrolase family 127 protein	NA	NA	NA	NA	NA
AXM30494.1|1599115_1600150_-|transposase	IS630 family transposase	transposase	S5VXX4	Leptospira_phage	32.8	8.0e-43
AXM28211.1|1600987_1602223_-|transposase	ISL3-like element ISXoo13 family transposase	transposase	NA	NA	NA	NA
AXM30495.1|1602271_1602478_+|transposase	transposase	transposase	NA	NA	NA	NA
AXM28212.1|1604151_1604529_-	hypothetical protein	NA	NA	NA	NA	NA
AXM28213.1|1604734_1605988_+	molybdopterin molybdenumtransferase MoeA	NA	NA	NA	NA	NA
AXM28214.1|1606025_1606595_+	molybdenum cofactor guanylyltransferase	NA	NA	NA	NA	NA
AXM28215.1|1606578_1606941_+	hypothetical protein	NA	NA	NA	NA	NA
AXM28216.1|1608334_1608529_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AXM28217.1|1609337_1610315_-	siroheme synthase	NA	NA	NA	NA	NA
AXM28218.1|1611522_1612488_+|transposase	IS1595-like element ISXo5 family transposase	transposase	NA	NA	NA	NA
AXM28219.1|1612852_1613032_+	hypothetical protein	NA	NA	NA	NA	NA
AXM28220.1|1613471_1614434_-|transposase	IS1595-like element ISXo2 family transposase	transposase	NA	NA	NA	NA
AXM28221.1|1614562_1615531_+|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	60.3	8.7e-100
AXM28222.1|1615846_1616830_-|transposase	IS5 family transposase	transposase	A0A077K814	Ralstonia_phage	61.5	1.5e-99
AXM30496.1|1617269_1617527_+	stress-induced protein	NA	NA	NA	NA	NA
AXM28223.1|1618826_1620062_+|transposase	ISL3 family transposase	transposase	NA	NA	NA	NA
AXM28224.1|1620818_1621589_-	phosphopantetheinyl transferase	NA	NA	NA	NA	NA
AXM28225.1|1621958_1623251_+	nucleotide sugar dehydrogenase	NA	NA	NA	NA	NA
AXM28226.1|1623234_1624497_-	TIGR03862 family flavoprotein	NA	NA	NA	NA	NA
AXM28227.1|1624508_1624940_-	FKBP-type peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
AXM28228.1|1624998_1625364_+	hypothetical protein	NA	NA	NA	NA	NA
AXM28229.1|1625497_1626466_+|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	60.3	8.7e-100
AXM28230.1|1626623_1627385_+	sulfurtransferase	NA	NA	NA	NA	NA
AXM28231.1|1627606_1628254_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AXM28232.1|1628357_1629120_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
AXM28233.1|1629646_1633360_-	ribonuclease E/G	NA	NA	NA	NA	NA
AXM28234.1|1633770_1634757_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
AXM28235.1|1634789_1636574_-	DUF3300 domain-containing protein	NA	NA	NA	NA	NA
AXM28236.1|1636922_1637183_-	zinc transporter ZupT	NA	NA	NA	NA	NA
AXM28237.1|1637209_1637443_-	zinc transporter ZupT	NA	NA	NA	NA	NA
AXM28238.1|1637458_1637881_-	energy transducer TonB	NA	NA	NA	NA	NA
AXM28239.1|1637877_1638234_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
AXM28240.1|1638321_1638921_+	Fe-S biogenesis protein NfuA	NA	NA	NA	NA	NA
AXM28241.1|1638934_1640764_+	transmembrane repetitive protein	NA	NA	NA	NA	NA
AXM28242.1|1641421_1644256_+	hypothetical protein	NA	NA	NA	NA	NA
AXM30497.1|1644284_1645031_+	hypothetical protein	NA	NA	NA	NA	NA
AXM28243.1|1645048_1647391_+	hypothetical protein	NA	NA	NA	NA	NA
AXM28244.1|1647421_1648159_+	hypothetical protein	NA	NA	NA	NA	NA
AXM28245.1|1648183_1650100_+	hypothetical protein	NA	NA	NA	NA	NA
AXM28246.1|1650151_1651120_+|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	60.3	8.7e-100
AXM28247.1|1651305_1652541_-|transposase	ISL3-like element ISXoo13 family transposase	transposase	NA	NA	NA	NA
AXM28248.1|1652711_1654028_-|transposase	IS701 family transposase	transposase	NA	NA	NA	NA
AXM28249.1|1654163_1655132_+|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	60.0	4.3e-99
AXM30498.1|1656490_1656997_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA	NA
AXM28250.1|1656989_1658504_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA	NA
AXM28251.1|1658603_1659107_+	Hcp1 family type VI secretion system effector	NA	NA	NA	NA	NA
AXM28252.1|1659142_1659976_+	ImpE protein	NA	NA	NA	NA	NA
AXM28253.1|1659963_1660467_+|plate	type VI secretion system baseplate subunit TssE	plate	NA	NA	NA	NA
AXM28254.1|1660470_1662348_+|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
AXM28255.1|1662311_1663322_+|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
AXM28256.1|1663354_1666060_+	type VI secretion system ATPase TssH	NA	H6X3M6	Enterobacteria_phage	29.3	4.3e-80
AXM28257.1|1666248_1666746_+	hypothetical protein	NA	NA	NA	NA	NA
AXM28258.1|1666979_1667306_+	hypothetical protein	NA	NA	NA	NA	NA
AXM28259.1|1667693_1668152_+	hypothetical protein	NA	NA	NA	NA	NA
AXM28260.1|1668416_1670354_+	type VI secretion system tip protein VgrG	NA	A0A077K8Q4	Ralstonia_phage	28.6	3.4e-39
AXM28261.1|1670362_1670902_+	hypothetical protein	NA	NA	NA	NA	NA
AXM28262.1|1670898_1672290_+	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA	NA
AXM28263.1|1672286_1673624_+|plate	type VI secretion system baseplate subunit TssK	plate	NA	NA	NA	NA
>prophage 13
CP031458	Xanthomonas oryzae pv. oryzae strain JL28 chromosome, complete genome	4697691	1790082	1801857	4697691	tRNA	Pseudomonas_phage(22.22%)	14	NA	NA
AXM30517.1|1790082_1791759_+	2-polyprenylphenol 6-hydroxylase	NA	E5EQ95	Micromonas_sp._RCC1109_virus	27.2	3.3e-38
AXM28338.1|1791847_1792489_+	LexA repressor 2	NA	A0A1W6JNS2	Morganella_phage	40.2	2.4e-13
AXM28339.1|1792661_1793696_+	DNA recombination/repair protein RecA	NA	A0A0S2MVG1	Bacillus_phage	60.7	6.2e-112
AXM28340.1|1793744_1793948_-	hypothetical protein	NA	NA	NA	NA	NA
AXM28341.1|1793998_1794487_+	recombination regulator RecX	NA	NA	NA	NA	NA
AXM28342.1|1794588_1797237_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.6	3.7e-84
AXM28343.1|1797376_1797589_+	carbon storage regulator	NA	J7I430	Pseudomonas_phage	76.5	1.3e-13
AXM30518.1|1798314_1798719_+	helix-turn-helix domain-containing protein	NA	A0A1W6JTD5	Pseudomonas_phage	56.6	1.1e-32
AXM28344.1|1799106_1799406_+	hypothetical protein	NA	NA	NA	NA	NA
AXM28345.1|1799428_1799656_+	hypothetical protein	NA	NA	NA	NA	NA
AXM28346.1|1799591_1800287_+	DNA helicase	NA	E5DV83	Deep-sea_thermophilic_phage	41.0	5.6e-16
AXM28347.1|1800291_1801041_+	isopentenyl transferase	NA	NA	NA	NA	NA
AXM28348.1|1801284_1801515_+	hypothetical protein	NA	D5LH07	Escherichia_phage	63.8	4.7e-20
AXM28349.1|1801557_1801857_+	endolysin	NA	A0A1W6JT17	Escherichia_phage	66.7	1.5e-15
>prophage 14
CP031458	Xanthomonas oryzae pv. oryzae strain JL28 chromosome, complete genome	4697691	1838214	1901483	4697691	tRNA,transposase	uncultured_Caudovirales_phage(42.86%)	41	NA	NA
AXM28381.1|1838214_1838977_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
AXM28382.1|1839387_1840104_+	4-hydroxy-tetrahydrodipicolinate reductase	NA	NA	NA	NA	NA
AXM28383.1|1840343_1841468_+	carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	32.2	7.8e-44
AXM28384.1|1841467_1841911_+	hypothetical protein	NA	NA	NA	NA	NA
AXM28385.1|1841919_1845162_+	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
AXM28386.1|1845158_1845635_+	transcription elongation factor GreA	NA	NA	NA	NA	NA
AXM28387.1|1845651_1846572_+	phosphoglycerate mutase	NA	NA	NA	NA	NA
AXM28388.1|1846568_1848308_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	27.8	1.3e-42
AXM28389.1|1849055_1850075_+|transposase	IS1595 family transposase	transposase	NA	NA	NA	NA
AXM28390.1|1850108_1851065_+|transposase	IS30 family transposase IS1112a	transposase	Q9MBM9	Staphylococcus_prophage	35.2	2.1e-42
AXM28391.1|1851359_1851737_+	hypothetical protein	NA	NA	NA	NA	NA
AXM28392.1|1851897_1852599_-|transposase	transposase	transposase	A9YX10	Burkholderia_phage	32.9	1.9e-16
AXM28393.1|1855405_1856353_+	LytTR family transcriptional regulator	NA	NA	NA	NA	NA
AXM28394.1|1856606_1857731_+	peptide chain release factor 2	NA	A0A0S4KWG0	Pseudomonas_phage	39.7	9.4e-05
AXM28395.1|1857935_1859453_+|tRNA	lysine--tRNA ligase	tRNA	A0A2K9KZX5	Tupanvirus	39.9	3.8e-86
AXM28396.1|1859594_1860731_+	two-component system response regulator	NA	NA	NA	NA	NA
AXM28397.1|1860732_1861071_+	hypothetical protein	NA	NA	NA	NA	NA
AXM28398.1|1861095_1863273_+	hybrid sensor histidine kinase/response regulator	NA	A0A1V0SGX0	Hokovirus	32.8	3.0e-47
AXM28399.1|1863284_1864154_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AXM28400.1|1864330_1866013_-	long-chain fatty acid--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	26.8	7.1e-33
AXM28401.1|1866662_1869431_-	aconitate hydratase AcnA	NA	NA	NA	NA	NA
AXM28402.1|1869578_1869827_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA	NA
AXM28403.1|1869823_1870234_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA	NA
AXM28404.1|1870299_1872891_+	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase	NA	NA	NA	NA	NA
AXM28405.1|1873244_1874060_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
AXM30524.1|1874715_1876959_-	EAL domain-containing protein	NA	NA	NA	NA	NA
AXM28406.1|1877067_1878144_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
AXM28407.1|1878140_1878737_-	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
AXM28408.1|1878733_1879600_-	chemotaxis protein CheR	NA	NA	NA	NA	NA
AXM28409.1|1879858_1882258_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	58.3	7.9e-09
AXM30525.1|1882336_1882642_-	hypothetical protein	NA	NA	NA	NA	NA
AXM28410.1|1882902_1883701_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
AXM28411.1|1884549_1885032_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
AXM28412.1|1885167_1885965_-	pilus assembly protein PilZ	NA	NA	NA	NA	NA
AXM28413.1|1886034_1886244_-	hypothetical protein	NA	NA	NA	NA	NA
AXM28414.1|1886922_1889184_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	54.5	1.3e-10
AXM28415.1|1889577_1891839_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	40.9	9.3e-12
AXM28416.1|1892431_1894507_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	40.9	1.3e-12
AXM30526.1|1895191_1897303_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.8	3.2e-14
AXM28417.1|1898031_1900278_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.2	2.9e-13
AXM28418.1|1900517_1901483_-|transposase	IS1595-like element ISXo5 family transposase	transposase	NA	NA	NA	NA
>prophage 15
CP031458	Xanthomonas oryzae pv. oryzae strain JL28 chromosome, complete genome	4697691	1925262	1989103	4697691	transposase	Ralstonia_phage(37.5%)	38	NA	NA
AXM28436.1|1925262_1926231_+|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	60.3	8.7e-100
AXM28437.1|1926730_1927366_-	hypothetical protein	NA	NA	NA	NA	NA
AXM28438.1|1927427_1927805_-	hypothetical protein	NA	NA	NA	NA	NA
AXM28439.1|1927746_1928055_+	hypothetical protein	NA	NA	NA	NA	NA
AXM28440.1|1928051_1928468_+	type I toxin-antitoxin system SymE family toxin	NA	NA	NA	NA	NA
AXM28441.1|1929572_1930892_-|transposase	IS701 family transposase	transposase	NA	NA	NA	NA
AXM28442.1|1931119_1931434_-	DUF1153 domain-containing protein	NA	NA	NA	NA	NA
AXM28443.1|1931366_1932326_-|transposase	IS701 family transposase	transposase	NA	NA	NA	NA
AXM28444.1|1932480_1932870_+	type VI secretion protein	NA	NA	NA	NA	NA
AXM28445.1|1932909_1935399_+	avirulence protein	NA	NA	NA	NA	NA
AXM28446.1|1936964_1939727_+	type VI secretion system tip protein VgrG	NA	A0A2H4JCD4	uncultured_Caudovirales_phage	27.2	1.5e-43
AXM28447.1|1939735_1940665_+	DUF4123 domain-containing protein	NA	NA	NA	NA	NA
AXM28448.1|1940661_1943496_+	hypothetical protein	NA	NA	NA	NA	NA
AXM30529.1|1943526_1944270_+	hypothetical protein	NA	NA	NA	NA	NA
AXM28449.1|1944294_1946637_+	hypothetical protein	NA	NA	NA	NA	NA
AXM28450.1|1946665_1947394_+	hypothetical protein	NA	NA	NA	NA	NA
AXM28451.1|1947411_1949757_+	hypothetical protein	NA	NA	NA	NA	NA
AXM28452.1|1949996_1951316_+|transposase	IS701 family transposase	transposase	NA	NA	NA	NA
AXM28453.1|1951528_1952497_-|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	60.3	8.7e-100
AXM30530.1|1953163_1954300_-	carbohydrate porin	NA	NA	NA	NA	NA
AXM28454.1|1954618_1956361_-	PTS fructose transporter subunit EIIBC	NA	NA	NA	NA	NA
AXM28455.1|1956519_1957476_-	1-phosphofructokinase family hexose kinase	NA	NA	NA	NA	NA
AXM28456.1|1957472_1959989_-	phosphoenolpyruvate--protein phosphotransferase	NA	A0A1V0SGR7	Hokovirus	28.5	6.3e-09
AXM28457.1|1960149_1961145_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
AXM28458.1|1961851_1962817_+|transposase	IS1595-like element ISXo5 family transposase	transposase	NA	NA	NA	NA
AXM28459.1|1963792_1966963_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AXM28460.1|1966975_1968280_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AXM28461.1|1968294_1968954_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AXM28462.1|1969231_1974256_+	NAD-glutamate dehydrogenase	NA	NA	NA	NA	NA
AXM28463.1|1974523_1974763_+	hypothetical protein	NA	NA	NA	NA	NA
AXM28464.1|1974704_1975688_+|transposase	IS5 family transposase	transposase	A0A077K814	Ralstonia_phage	60.5	1.4e-97
AXM28465.1|1975812_1976799_-	two-component system response regulator	NA	W8CYM9	Bacillus_phage	26.8	2.8e-05
AXM28466.1|1976832_1980927_-	response regulator	NA	A0A1V0SGX0	Hokovirus	28.4	1.9e-55
AXM28467.1|1981068_1982373_-	DUF445 family protein	NA	NA	NA	NA	NA
AXM28468.1|1982543_1983398_-	plasmid replication/partition related protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	39.8	6.4e-14
AXM30531.1|1983564_1986702_+	hypothetical protein	NA	NA	NA	NA	NA
AXM28469.1|1986762_1988115_-	aspartate aminotransferase family protein	NA	NA	NA	NA	NA
AXM28470.1|1988339_1989103_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
>prophage 16
CP031458	Xanthomonas oryzae pv. oryzae strain JL28 chromosome, complete genome	4697691	2003146	2064237	4697691	protease,tRNA,transposase	Bacillus_virus(22.22%)	52	NA	NA
AXM28481.1|2003146_2004535_-|transposase	IS701 family transposase	transposase	NA	NA	NA	NA
AXM28482.1|2005041_2006244_+	HlyD family secretion protein	NA	NA	NA	NA	NA
AXM28483.1|2006240_2007827_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
AXM28484.1|2007813_2009325_+	hypothetical protein	NA	NA	NA	NA	NA
AXM28485.1|2009470_2010718_+	polyamine ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.3	1.2e-24
AXM28486.1|2010653_2011016_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
AXM28487.1|2011031_2011862_+	putrescine ABC transporter permease PotI	NA	NA	NA	NA	NA
AXM30532.1|2012017_2012428_-	hypothetical protein	NA	NA	NA	NA	NA
AXM30533.1|2012682_2014047_+	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AXM28488.1|2014198_2015200_-	magnesium and cobalt transport protein CorA	NA	NA	NA	NA	NA
AXM28489.1|2015215_2016496_-	DUF4105 domain-containing protein	NA	NA	NA	NA	NA
AXM28490.1|2016492_2017371_-	CBS domain-containing protein	NA	NA	NA	NA	NA
AXM28491.1|2017465_2017984_-	hypothetical protein	NA	NA	NA	NA	NA
AXM28492.1|2017983_2018469_-	endoribonuclease YbeY	NA	NA	NA	NA	NA
AXM28493.1|2018523_2019186_-	hypothetical protein	NA	NA	NA	NA	NA
AXM28494.1|2019597_2020584_-	PhoH family protein	NA	W8D063	Erwinia_phage	47.7	2.5e-46
AXM28495.1|2021007_2022462_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
AXM28496.1|2024397_2025384_+	lytic transglycosylase domain-containing protein	NA	A0A0H3V0Q1	Geobacillus_virus	56.0	1.3e-29
AXM28497.1|2025913_2026558_+	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
AXM28498.1|2026557_2027817_+	cytochrome b	NA	NA	NA	NA	NA
AXM30534.1|2027824_2028568_+	cytochrome c1	NA	NA	NA	NA	NA
AXM28499.1|2028961_2029597_+	stringent starvation protein A	NA	NA	NA	NA	NA
AXM28500.1|2029675_2030116_+|protease	ClpXP protease specificity-enhancing factor	protease	A0A1S5R3H3	Pseudomonas_phage	46.2	9.3e-25
AXM28501.1|2030148_2030475_+	hypothetical protein	NA	NA	NA	NA	NA
AXM28502.1|2030685_2031102_-	DUF3301 domain-containing protein	NA	NA	NA	NA	NA
AXM30535.1|2035594_2036560_-|transposase	IS1595-like element ISXo5 family transposase	transposase	NA	NA	NA	NA
AXM30536.1|2037140_2038325_+|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	45.4	1.0e-41
AXM30537.1|2039097_2039286_+	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA	NA
AXM28503.1|2039770_2040049_+	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA	NA
AXM28504.1|2040036_2040327_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
AXM30538.1|2040928_2041108_+	hypothetical protein	NA	NA	NA	NA	NA
AXM28505.1|2041330_2041465_+	hypothetical protein	NA	NA	NA	NA	NA
AXM28506.1|2041971_2042373_-	histone-like nucleoid-structuring protein	NA	NA	NA	NA	NA
AXM28507.1|2042786_2043137_+	hypothetical protein	NA	NA	NA	NA	NA
AXM28508.1|2043000_2043390_+	ATP-dependent DNA ligase	NA	NA	NA	NA	NA
AXM28509.1|2043465_2044557_-	ribonuclease D	NA	NA	NA	NA	NA
AXM28510.1|2044828_2046664_+	formylglycine-generating enzyme family protein	NA	A0A075BSL8	Microcystis_phage	33.1	5.6e-23
AXM28511.1|2046980_2047727_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
AXM28512.1|2047944_2049207_+	virulence factor	NA	NA	NA	NA	NA
AXM28513.1|2049502_2050840_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	36.2	1.3e-37
AXM28514.1|2050923_2051686_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
AXM28515.1|2051801_2052869_-|tRNA	tRNA epoxyqueuosine(34) reductase QueG	tRNA	NA	NA	NA	NA
AXM28516.1|2052893_2054381_+	bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
AXM28517.1|2054377_2054878_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
AXM28518.1|2054930_2056664_+	N-acetylmuramoyl-L-alanine amidase	NA	A6XML1	Bacillus_virus	28.4	4.1e-15
AXM28519.1|2056801_2058679_+	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	35.2	1.4e-85
AXM28520.1|2058678_2059620_+	DUF1684 domain-containing protein	NA	NA	NA	NA	NA
AXM28521.1|2059653_2060625_+	TraB/GumN family protein	NA	NA	NA	NA	NA
AXM30539.1|2060798_2061374_-	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
AXM28522.1|2061533_2062274_-	beta-ketoacyl-ACP reductase	NA	NA	NA	NA	NA
AXM28523.1|2062361_2063261_-|tRNA	tRNA glutamyl-Q(34) synthetase GluQRS	tRNA	NA	NA	NA	NA
AXM28524.1|2063358_2064237_+|protease	protease HtpX	protease	NA	NA	NA	NA
>prophage 17
CP031458	Xanthomonas oryzae pv. oryzae strain JL28 chromosome, complete genome	4697691	2096068	2131533	4697691	tRNA,transposase	Streptococcus_phage(33.33%)	32	NA	NA
AXM28551.1|2096068_2097385_-|transposase	IS701 family transposase	transposase	NA	NA	NA	NA
AXM28552.1|2097584_2098553_-|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	60.0	4.3e-99
AXM28553.1|2098689_2100009_+|transposase	IS701 family transposase	transposase	NA	NA	NA	NA
AXM28554.1|2100232_2100721_+	general stress protein	NA	NA	NA	NA	NA
AXM28555.1|2101092_2101356_+	hypothetical protein	NA	NA	NA	NA	NA
AXM28556.1|2101381_2102145_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
AXM28557.1|2103043_2103943_-	M23 family peptidase	NA	A0A075BS18	Microcystis_phage	41.2	2.6e-13
AXM28558.1|2103882_2105232_-	dihydroorotase	NA	NA	NA	NA	NA
AXM28559.1|2105228_2105510_-	membrane protein insertion efficiency factor YidD	NA	NA	NA	NA	NA
AXM28560.1|2105600_2106641_+	RNA polymerase-binding protein DksA	NA	NA	NA	NA	NA
AXM28561.1|2106783_2107845_+	peptidase S41	NA	NA	NA	NA	NA
AXM28562.1|2107912_2109163_-	MFS transporter	NA	NA	NA	NA	NA
AXM28563.1|2109159_2109597_-	SufE family protein	NA	NA	NA	NA	NA
AXM28564.1|2110094_2111525_-|tRNA	cysteine--tRNA ligase	tRNA	M1PG92	Moumouvirus	34.5	1.1e-42
AXM28565.1|2111695_2112190_+	hypothetical protein	NA	NA	NA	NA	NA
AXM28566.1|2112502_2113528_+	N-acetylornithine carbamoyltransferase	NA	NA	NA	NA	NA
AXM28567.1|2113599_2114841_+	argininosuccinate synthase	NA	NA	NA	NA	NA
AXM28568.1|2115082_2115535_+	N-acetyltransferase	NA	NA	NA	NA	NA
AXM28569.1|2115540_2116641_+	acetylornithine deacetylase	NA	NA	NA	NA	NA
AXM28570.1|2116680_2118024_+	acetylglutamate kinase	NA	NA	NA	NA	NA
AXM28571.1|2118636_2119587_+	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA	NA
AXM28572.1|2119710_2121006_+	argininosuccinate lyase	NA	NA	NA	NA	NA
AXM28573.1|2121002_2121371_+	cupin domain-containing protein	NA	NA	NA	NA	NA
AXM28574.1|2121370_2121631_+	hypothetical protein	NA	NA	NA	NA	NA
AXM28575.1|2121644_2122799_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	37.8	1.2e-47
AXM28576.1|2122963_2124208_+	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	45.1	2.5e-91
AXM28577.1|2124575_2126489_+	CocE/NonD family hydrolase	NA	NA	NA	NA	NA
AXM28578.1|2126469_2127735_-	MFS transporter	NA	NA	NA	NA	NA
AXM28579.1|2127955_2128066_-	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
AXM28580.1|2128403_2129369_-|transposase	IS1595-like element ISXo5 family transposase	transposase	NA	NA	NA	NA
AXM28581.1|2129510_2129774_-	cytochrome D ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AXM28582.1|2130576_2131533_-|transposase	IS30 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	35.3	1.8e-41
>prophage 18
CP031458	Xanthomonas oryzae pv. oryzae strain JL28 chromosome, complete genome	4697691	2235779	2333208	4697691	protease,tRNA,transposase	uncultured_Mediterranean_phage(28.57%)	74	NA	NA
AXM28664.1|2235779_2236916_-|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
AXM28665.1|2236912_2237371_-	NUDIX hydrolase	NA	NA	NA	NA	NA
AXM28666.1|2237621_2237942_+|protease	ATP-dependent Clp protease adaptor ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	1.0e-12
AXM28667.1|2238085_2240368_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	44.6	8.7e-175
AXM28668.1|2240648_2240867_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
AXM30546.1|2240947_2241700_-|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	tRNA	NA	NA	NA	NA
AXM28669.1|2243127_2244249_-	N-acetyltransferase	NA	NA	NA	NA	NA
AXM28670.1|2244306_2245275_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	44.5	5.9e-64
AXM28671.1|2245558_2247919_+	DNA translocase FtsK	NA	G1D482	Mycobacterium_virus	45.8	2.5e-84
AXM28672.1|2248081_2250010_+	DUF3857 domain-containing protein	NA	NA	NA	NA	NA
AXM30547.1|2250116_2250746_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
AXM28673.1|2250858_2255025_-	type III effector	NA	NA	NA	NA	NA
AXM30548.1|2255261_2256638_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.3	6.8e-74
AXM28674.1|2256669_2256996_-	hypothetical protein	NA	NA	NA	NA	NA
AXM28675.1|2256992_2257400_-	fluoride efflux transporter CrcB	NA	A0A2H4J148	uncultured_Caudovirales_phage	49.1	5.7e-21
AXM28676.1|2257431_2257782_-	hypothetical protein	NA	NA	NA	NA	NA
AXM28677.1|2257778_2259110_-	voltage-gated chloride channel protein	NA	A0A1X9I5Z9	Streptococcus_phage	35.2	1.5e-41
AXM28678.1|2259430_2260636_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
AXM28679.1|2260793_2263166_-	3-hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
AXM28680.1|2263190_2263823_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AXM28681.1|2264042_2264468_+	nucleoside-diphosphate kinase	NA	A0A167REB2	Powai_lake_megavirus	41.7	1.1e-19
AXM28682.1|2264486_2265692_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
AXM28683.1|2265702_2266491_+	type IV pilus biogenesis/stability protein PilW	NA	NA	NA	NA	NA
AXM28684.1|2266487_2267348_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AXM28685.1|2267418_2268057_+	hypothetical protein	NA	NA	NA	NA	NA
AXM28686.1|2268053_2269274_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
AXM28687.1|2269284_2270682_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
AXM28688.1|2270996_2272217_+	molybdopterin molybdenumtransferase MoeA	NA	NA	NA	NA	NA
AXM28689.1|2274091_2274331_+	hypothetical protein	NA	NA	NA	NA	NA
AXM28690.1|2274598_2275567_-|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	60.3	8.7e-100
AXM28691.1|2276481_2277450_-|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	60.3	8.7e-100
AXM28692.1|2279266_2280742_+|transposase	IS5 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	54.8	1.2e-76
AXM28693.1|2280719_2281685_-|transposase	IS1595-like element ISXo5 family transposase	transposase	NA	NA	NA	NA
AXM28694.1|2281961_2283119_-	molybdopterin-synthase adenylyltransferase MoeB	NA	NA	NA	NA	NA
AXM28695.1|2283352_2284672_-|transposase	IS701 family transposase	transposase	NA	NA	NA	NA
AXM28696.1|2284769_2285826_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
AXM28697.1|2285914_2287819_-	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	36.8	1.0e-112
AXM28698.1|2288059_2288680_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
AXM28699.1|2288676_2289183_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	41.1	4.8e-25
AXM30549.1|2289241_2289727_+	hypothetical protein	NA	NA	NA	NA	NA
AXM30550.1|2289785_2289968_+	hypothetical protein	NA	NA	NA	NA	NA
AXM28700.1|2289958_2290243_+	ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	57.0	1.4e-18
AXM28701.1|2290239_2292033_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AXM28702.1|2292039_2293071_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
AXM28703.1|2293350_2294114_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
AXM30551.1|2294510_2295143_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
AXM30552.1|2295335_2295761_+	TonB-dependent receptor	NA	NA	NA	NA	NA
AXM28704.1|2298033_2299155_+	phytase	NA	NA	NA	NA	NA
AXM28705.1|2302544_2303252_+	hypothetical protein	NA	NA	NA	NA	NA
AXM28706.1|2303322_2303637_+	hypothetical protein	NA	NA	NA	NA	NA
AXM28707.1|2303596_2305093_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
AXM28708.1|2305216_2305648_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AXM28709.1|2305834_2306905_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
AXM28710.1|2306974_2308120_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	46.2	2.2e-86
AXM28711.1|2308251_2308605_+	preprotein translocase subunit YajC	NA	NA	NA	NA	NA
AXM28712.1|2308801_2310646_+	protein translocase subunit SecD	NA	NA	NA	NA	NA
AXM28713.1|2310740_2311709_+	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	30.3	1.4e-28
AXM28714.1|2311789_2312152_-	recombinase	NA	NA	NA	NA	NA
AXM28715.1|2314839_2316159_-|transposase	IS701 family transposase	transposase	NA	NA	NA	NA
AXM30553.1|2316408_2317593_-|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	45.4	1.0e-41
AXM28716.1|2317643_2318705_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
AXM28717.1|2318941_2320261_-|transposase	IS701 family transposase	transposase	NA	NA	NA	NA
AXM28718.1|2320331_2320973_-	ribonuclease T	NA	NA	NA	NA	NA
AXM28719.1|2321250_2321658_-	hypothetical protein	NA	NA	NA	NA	NA
AXM28720.1|2321790_2322501_-	phosphate transport system regulatory protein PhoU	NA	NA	NA	NA	NA
AXM28721.1|2322629_2323460_-	phosphate ABC transporter ATP-binding protein PstB	NA	W8CYL7	Bacillus_phage	32.6	5.5e-18
AXM28722.1|2323482_2324352_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
AXM28723.1|2324351_2325326_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
AXM28724.1|2325438_2326530_-	phosphate ABC transporter substrate-binding protein PstS	NA	E3SKK5	Synechococcus_phage	39.7	1.1e-47
AXM30554.1|2326717_2327791_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4SNR3	Cyanophage	38.4	5.0e-48
AXM28725.1|2327925_2329176_-	porin	NA	NA	NA	NA	NA
AXM28726.1|2329515_2329836_+	hypothetical protein	NA	NA	NA	NA	NA
AXM28727.1|2330399_2331635_-|transposase	ISL3-like element ISXoo13 family transposase	transposase	NA	NA	NA	NA
AXM28728.1|2332239_2333208_+|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	60.0	1.5e-99
>prophage 19
CP031458	Xanthomonas oryzae pv. oryzae strain JL28 chromosome, complete genome	4697691	2453037	2518864	4697691	protease,transposase	Bacillus_phage(30.0%)	56	NA	NA
AXM28801.1|2453037_2453646_+|protease	rhomboid family intramembrane serine protease	protease	NA	NA	NA	NA
AXM28802.1|2453976_2454165_-	hypothetical protein	NA	NA	NA	NA	NA
AXM30567.1|2454348_2454663_+	N-acetyltransferase	NA	NA	NA	NA	NA
AXM28803.1|2454713_2455547_+	hypothetical protein	NA	NA	NA	NA	NA
AXM28804.1|2455613_2456114_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AXM30568.1|2456205_2456784_-	hypothetical protein	NA	NA	NA	NA	NA
AXM28805.1|2456945_2457446_-	RNA polymerase sigma factor	NA	NA	NA	NA	NA
AXM28806.1|2458970_2459684_+	hypothetical protein	NA	NA	NA	NA	NA
AXM28807.1|2459935_2460175_+	HTH domain-containing protein	NA	NA	NA	NA	NA
AXM28808.1|2462405_2462654_+	hypothetical protein	NA	NA	NA	NA	NA
AXM28809.1|2462631_2463117_+	glutathione peroxidase	NA	A0A1S7DM81	Molluscum_contagiosum_virus	36.2	2.8e-14
AXM28810.1|2463267_2464047_-	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
AXM28811.1|2464235_2466116_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	38.0	2.3e-24
AXM28812.1|2466449_2467967_+	fumarate hydratase	NA	NA	NA	NA	NA
AXM28813.1|2468103_2468739_+	glutathione S-transferase family protein	NA	NA	NA	NA	NA
AXM28814.1|2469167_2470301_-	phospholipase	NA	NA	NA	NA	NA
AXM28815.1|2470623_2471706_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
AXM30569.1|2472005_2472887_+	hypothetical protein	NA	NA	NA	NA	NA
AXM28816.1|2473650_2474625_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	39.6	2.0e-19
AXM28817.1|2474791_2475025_+	hypothetical protein	NA	NA	NA	NA	NA
AXM28818.1|2476919_2477683_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
AXM28819.1|2479248_2482644_-	PAS domain S-box protein	NA	A0A1V0SGX0	Hokovirus	27.8	2.9e-25
AXM28820.1|2482858_2483239_-	response regulator	NA	NA	NA	NA	NA
AXM28821.1|2484254_2484458_+	hypothetical protein	NA	NA	NA	NA	NA
AXM28822.1|2486084_2486744_-	keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase	NA	NA	NA	NA	NA
AXM28823.1|2486799_2488716_-	phosphogluconate dehydratase	NA	NA	NA	NA	NA
AXM28824.1|2488818_2489538_-	6-phosphogluconolactonase	NA	NA	NA	NA	NA
AXM28825.1|2489534_2490542_-	glucokinase	NA	NA	NA	NA	NA
AXM28826.1|2490538_2491969_-	glucose-6-phosphate dehydrogenase	NA	A0A222YYZ2	Synechococcus_phage	34.5	2.2e-67
AXM28827.1|2492402_2493500_+	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	30.1	2.2e-22
AXM28828.1|2493628_2494501_-	folate-binding protein	NA	NA	NA	NA	NA
AXM30570.1|2494444_2494711_+	DUF1674 domain-containing protein	NA	NA	NA	NA	NA
AXM28829.1|2494770_2495166_+	succinate dehydrogenase, cytochrome b556 subunit	NA	NA	NA	NA	NA
AXM28830.1|2495162_2495549_+	succinate dehydrogenase, hydrophobic membrane anchor protein	NA	NA	NA	NA	NA
AXM28831.1|2495583_2497374_+	succinate dehydrogenase flavoprotein subunit	NA	NA	NA	NA	NA
AXM28832.1|2497377_2497587_+	hypothetical protein	NA	NA	NA	NA	NA
AXM28833.1|2497603_2498386_+	succinate dehydrogenase iron-sulfur subunit	NA	NA	NA	NA	NA
AXM28834.1|2498496_2498745_+	succinate dehydrogenase assembly factor 2 family protein	NA	NA	NA	NA	NA
AXM28835.1|2498695_2499148_+	hypothetical protein	NA	NA	NA	NA	NA
AXM28836.1|2499171_2500413_+	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
AXM28837.1|2500405_2501140_+	lipoprotein-releasing system ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	34.5	1.0e-31
AXM28838.1|2501140_2501323_+	hypothetical protein	NA	NA	NA	NA	NA
AXM28839.1|2502533_2503499_-|transposase	IS1595-like element ISXo5 family transposase	transposase	NA	NA	NA	NA
AXM28840.1|2503752_2506161_+	DNA internalization-related competence protein ComEC/Rec2	NA	NA	NA	NA	NA
AXM28841.1|2506189_2506852_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
AXM28842.1|2506855_2507320_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
AXM28843.1|2507316_2509086_+	lipid A export permease/ATP-binding protein MsbA	NA	W8CYL7	Bacillus_phage	28.0	9.4e-52
AXM28844.1|2509082_2510123_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
AXM28845.1|2510414_2511194_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
AXM30571.1|2511190_2511655_+	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
AXM28846.1|2511597_2513097_+	hypothetical protein	NA	NA	NA	NA	NA
AXM28847.1|2513093_2514950_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
AXM28848.1|2514949_2515582_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
AXM28849.1|2516056_2516563_-	glyoxalase	NA	NA	NA	NA	NA
AXM28850.1|2516729_2517629_-|transposase	IS30 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	35.1	2.8e-36
AXM30572.1|2517679_2518864_+|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	44.8	5.0e-41
>prophage 20
CP031458	Xanthomonas oryzae pv. oryzae strain JL28 chromosome, complete genome	4697691	2523250	2597220	4697691	tRNA,transposase	Ralstonia_phage(20.0%)	55	NA	NA
AXM28852.1|2523250_2524216_-|transposase	IS1595 family transposase	transposase	NA	NA	NA	NA
AXM28853.1|2524360_2525329_+|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	60.3	8.7e-100
AXM28854.1|2525743_2526700_+|transposase	IS30 family transposase IS1112a	transposase	Q9MBM9	Staphylococcus_prophage	35.2	2.1e-42
AXM28855.1|2527954_2528626_-|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	38.9	5.2e-27
AXM28856.1|2528622_2528844_-|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
AXM28857.1|2529017_2533034_-	avirulence protein	NA	NA	NA	NA	NA
AXM28858.1|2533258_2533558_-	hypothetical protein	NA	A0A1W6DY99	Xanthomonas_phage	91.3	1.9e-45
AXM28859.1|2533561_2533756_-	hypothetical protein	NA	A0A1W6DXV7	Xanthomonas_phage	82.3	3.9e-20
AXM28860.1|2533986_2534750_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
AXM28861.1|2534839_2538595_-	avirulence protein	NA	NA	NA	NA	NA
AXM28862.1|2538818_2539118_-	hypothetical protein	NA	A0A1W6DY99	Xanthomonas_phage	91.3	1.9e-45
AXM28863.1|2539121_2539316_-	hypothetical protein	NA	A0A1W6DXV7	Xanthomonas_phage	80.6	2.5e-19
AXM28864.1|2542871_2543192_-	hypothetical protein	NA	NA	NA	NA	NA
AXM28865.1|2546259_2547057_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
AXM28866.1|2547207_2548557_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	51.6	4.5e-94
AXM28867.1|2548563_2549328_+	energy transducer TonB	NA	NA	NA	NA	NA
AXM30573.1|2549688_2550156_+	energy transducer TonB	NA	NA	NA	NA	NA
AXM30574.1|2550342_2551444_+|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	39.2	1.2e-36
AXM28868.1|2552621_2553590_-|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	60.0	1.5e-99
AXM28869.1|2553781_2554750_-|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	60.3	8.7e-100
AXM28870.1|2555610_2556810_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
AXM28871.1|2556958_2557141_+	cold shock domain-containing protein	NA	NA	NA	NA	NA
AXM28872.1|2557462_2558938_+|transposase	IS5 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	66.8	2.9e-99
AXM30575.1|2558992_2560177_-|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	44.8	5.0e-41
AXM28873.1|2560621_2561587_+|transposase	IS1595-like element ISXo5 family transposase	transposase	NA	NA	NA	NA
AXM28874.1|2562939_2563908_-|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	60.3	8.7e-100
AXM28875.1|2564066_2564414_-	hypothetical protein	NA	NA	NA	NA	NA
AXM28876.1|2564415_2565183_-	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA	NA
AXM28877.1|2566253_2567051_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
AXM28878.1|2567262_2569791_-	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	34.0	4.0e-64
AXM28879.1|2570357_2571803_-	acetylhydrolase	NA	M1HKG7	Acanthocystis_turfacea_Chlorella_virus	25.8	1.8e-08
AXM30576.1|2571756_2571981_+	hypothetical protein	NA	NA	NA	NA	NA
AXM28880.1|2572174_2572315_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AXM30577.1|2572314_2573463_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AXM28881.1|2573584_2574580_+	methyltransferase domain-containing protein	NA	A0A2H4J145	uncultured_Caudovirales_phage	46.9	3.7e-05
AXM28882.1|2574576_2575716_+	5-methyltetrahydrofolate--homocysteine methyltransferase	NA	A0A140XBC7	Dickeya_phage	66.7	2.2e-17
AXM28883.1|2575858_2578612_+	methionine synthase	NA	NA	NA	NA	NA
AXM28884.1|2578998_2580204_-	AGE family epimerase/isomerase	NA	NA	NA	NA	NA
AXM28885.1|2580200_2581259_-	carbohydrate kinase	NA	NA	NA	NA	NA
AXM28886.1|2581183_2582494_-	L-fucose:H+ symporter permease	NA	NA	NA	NA	NA
AXM30578.1|2582507_2583683_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
AXM28887.1|2583823_2584669_-	transporter	NA	NA	NA	NA	NA
AXM28888.1|2585002_2585755_-	DUF2058 family protein	NA	NA	NA	NA	NA
AXM28889.1|2585755_2585992_-	protein SlyX	NA	NA	NA	NA	NA
AXM28890.1|2585984_2587334_-	UDP-glucose/GDP-mannose dehydrogenase family protein	NA	A0A127AXI2	Bacillus_phage	40.4	2.4e-79
AXM28891.1|2587359_2588325_-	FKBP-type peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
AXM28892.1|2588416_2588974_-	glutathione peroxidase	NA	NA	NA	NA	NA
AXM28893.1|2589109_2589358_+	hypothetical protein	NA	NA	NA	NA	NA
AXM28894.1|2589360_2589723_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AXM28895.1|2589719_2590595_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.9	3.3e-13
AXM28896.1|2590591_2591578_+	ABC transporter permease	NA	NA	NA	NA	NA
AXM28897.1|2591587_2592424_+	hypothetical protein	NA	NA	NA	NA	NA
AXM28898.1|2593056_2593479_+	hypothetical protein	NA	NA	NA	NA	NA
AXM30579.1|2593601_2595005_-	class II fumarate hydratase	NA	NA	NA	NA	NA
AXM28899.1|2596456_2597220_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
>prophage 21
CP031458	Xanthomonas oryzae pv. oryzae strain JL28 chromosome, complete genome	4697691	2673552	2745798	4697691	tRNA,protease,coat,transposase	Emiliania_huxleyi_virus(20.0%)	58	NA	NA
AXM28949.1|2673552_2674587_+|coat	spore coat U domain-containing protein	coat	NA	NA	NA	NA
AXM28950.1|2674633_2674966_+	hypothetical protein	NA	NA	NA	NA	NA
AXM28951.1|2674968_2675694_+	molecular chaperone	NA	NA	NA	NA	NA
AXM28952.1|2676069_2676873_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
AXM28953.1|2677042_2677921_+	elongation factor Ts	NA	NA	NA	NA	NA
AXM28954.1|2678048_2678426_+	HDOD domain-containing protein	NA	NA	NA	NA	NA
AXM28955.1|2678482_2679205_+	UMP kinase	NA	NA	NA	NA	NA
AXM28956.1|2679385_2679943_+	ribosome recycling factor	NA	NA	NA	NA	NA
AXM30585.1|2679960_2680722_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	32.6	3.6e-16
AXM28957.1|2680718_2681546_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
AXM28958.1|2681548_2682739_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
AXM28959.1|2682765_2684112_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
AXM28960.1|2684108_2686562_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
AXM28961.1|2686961_2687975_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
AXM28962.1|2687971_2688433_+	beta-hydroxyacyl-ACP dehydratase	NA	NA	NA	NA	NA
AXM28963.1|2688456_2689248_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
AXM30586.1|2689286_2690543_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
AXM28964.1|2690539_2691280_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	38.0	1.6e-24
AXM28965.1|2691737_2695328_+	DNA polymerase III subunit alpha	NA	A0A291AVA6	Streptomyces_phage	36.6	4.4e-181
AXM28966.1|2695503_2696463_+	acetyl-CoA carboxylase carboxyltransferase subunit alpha	NA	NA	NA	NA	NA
AXM28967.1|2697302_2699483_+	ligand-gated channel	NA	NA	NA	NA	NA
AXM28968.1|2699482_2700220_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	27.6	3.5e-08
AXM28969.1|2700216_2701629_+	DUF3526 domain-containing protein	NA	NA	NA	NA	NA
AXM28970.1|2701565_2702909_+	DUF3526 domain-containing protein	NA	NA	NA	NA	NA
AXM28971.1|2703730_2703997_+	hypothetical protein	NA	NA	NA	NA	NA
AXM30587.1|2704074_2704521_-	CopD family protein	NA	NA	NA	NA	NA
AXM28972.1|2704594_2705197_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AXM30588.1|2705364_2706681_+	polyhydroxyalkanoate depolymerase	NA	NA	NA	NA	NA
AXM28973.1|2707153_2707717_+	hypothetical protein	NA	NA	NA	NA	NA
AXM30589.1|2711411_2711582_+	adenylyl-sulfate kinase	NA	NA	NA	NA	NA
AXM28974.1|2712810_2714292_+|transposase	IS5 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	66.7	3.7e-102
AXM28975.1|2714334_2714730_+	type I toxin-antitoxin system SymE family toxin	NA	NA	NA	NA	NA
AXM30590.1|2714769_2716146_-|transposase	IS5 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	55.1	2.0e-78
AXM30591.1|2717776_2718451_+	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	24.5	1.9e-08
AXM28976.1|2718455_2719232_+	VUT family protein	NA	R4TNY5	Halovirus	27.2	1.9e-09
AXM28977.1|2719652_2721590_+	DUF885 family protein	NA	NA	NA	NA	NA
AXM28978.1|2721771_2722749_-	homocysteine S-methyltransferase	NA	NA	NA	NA	NA
AXM28979.1|2722745_2724143_-	S-methylmethionine permease	NA	NA	NA	NA	NA
AXM28980.1|2724413_2725472_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
AXM28981.1|2726235_2726685_+	DUF2147 domain-containing protein	NA	NA	NA	NA	NA
AXM28982.1|2726909_2728994_+|tRNA	methionine--tRNA ligase	tRNA	NA	NA	NA	NA
AXM28983.1|2729201_2729798_+	HAD family hydrolase	NA	NA	NA	NA	NA
AXM28984.1|2729799_2730228_+	Rnf electron transport complex subunit RnfB	NA	NA	NA	NA	NA
AXM28985.1|2730440_2730623_-	hypothetical protein	NA	NA	NA	NA	NA
AXM28986.1|2730846_2731629_+	hypothetical protein	NA	NA	NA	NA	NA
AXM28987.1|2731714_2732083_+	DUF4345 domain-containing protein	NA	NA	NA	NA	NA
AXM28988.1|2732141_2732705_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
AXM28989.1|2732689_2733535_+	hypothetical protein	NA	NA	NA	NA	NA
AXM30592.1|2733760_2734759_+	acyl-CoA desaturase	NA	G4YAW5	Emiliania_huxleyi_virus	30.6	2.3e-18
AXM28990.1|2734755_2736006_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AXM28991.1|2735930_2736890_+	DUF1365 domain-containing protein	NA	NA	NA	NA	NA
AXM28992.1|2736886_2738182_+	class I SAM-dependent methyltransferase	NA	A0A2I2L5L3	Orpheovirus	32.4	3.9e-39
AXM28993.1|2738178_2738724_+	DUF2878 domain-containing protein	NA	NA	NA	NA	NA
AXM28994.1|2738720_2739503_+	DUF1295 domain-containing protein	NA	NA	NA	NA	NA
AXM28995.1|2739520_2740591_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AXM28996.1|2740752_2741100_-	RidA family protein	NA	NA	NA	NA	NA
AXM28997.1|2742080_2744645_+	bifunctional lysylphosphatidylglycerol flippase/synthetase MprF	NA	NA	NA	NA	NA
AXM28998.1|2745036_2745798_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
>prophage 22
CP031458	Xanthomonas oryzae pv. oryzae strain JL28 chromosome, complete genome	4697691	2898422	2978366	4697691	tRNA,transposase	Bacillus_phage(18.18%)	57	NA	NA
AXM29107.1|2898422_2899391_-|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	60.3	8.7e-100
AXM29108.1|2899401_2899602_-	hypothetical protein	NA	NA	NA	NA	NA
AXM29109.1|2899680_2899896_-	hypothetical protein	NA	NA	NA	NA	NA
AXM29110.1|2900296_2901541_-	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AXM29111.1|2901537_2901816_-	hypothetical protein	NA	NA	NA	NA	NA
AXM29112.1|2901893_2902295_-	hypothetical protein	NA	NA	NA	NA	NA
AXM29113.1|2902348_2902576_-	hypothetical protein	NA	NA	NA	NA	NA
AXM29114.1|2902577_2902949_-	biotin/lipoyl-binding protein	NA	NA	NA	NA	NA
AXM29115.1|2902945_2903242_-	hypothetical protein	NA	NA	NA	NA	NA
AXM29116.1|2903952_2905416_+	glycoside hydrolase family 125 protein	NA	NA	NA	NA	NA
AXM29117.1|2905551_2907894_+	alpha-mannosidase	NA	NA	NA	NA	NA
AXM29118.1|2908173_2910015_+	beta-galactosidase	NA	NA	NA	NA	NA
AXM30600.1|2910064_2912596_-	type III secretion system effector protein XopK	NA	NA	NA	NA	NA
AXM29119.1|2912677_2913013_+	hypothetical protein	NA	NA	NA	NA	NA
AXM29120.1|2913213_2913414_+	hypothetical protein	NA	NA	NA	NA	NA
AXM29121.1|2913756_2914992_+|transposase	ISL3-like element ISXoo13 family transposase	transposase	NA	NA	NA	NA
AXM29122.1|2915491_2916595_+	exo-alpha-sialidase	NA	NA	NA	NA	NA
AXM30601.1|2916736_2918695_+	hypothetical protein	NA	NA	NA	NA	NA
AXM29123.1|2918719_2919451_-	copper homeostasis protein CutC	NA	NA	NA	NA	NA
AXM29124.1|2919447_2920512_-	N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase	NA	NA	NA	NA	NA
AXM30602.1|2925133_2926216_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
AXM29125.1|2926227_2926851_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AXM29126.1|2927101_2927578_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
AXM29127.1|2927611_2928814_-	chemotaxis protein	NA	NA	NA	NA	NA
AXM29128.1|2928821_2935763_-	response regulator	NA	W8CYM9	Bacillus_phage	31.1	2.9e-11
AXM29129.1|2935876_2937913_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	42.1	2.1e-23
AXM29130.1|2937952_2938483_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
AXM29131.1|2938482_2938845_-	response regulator	NA	A0A220YL79	Alteromonas_virus	26.8	9.0e-10
AXM29132.1|2938862_2939264_-	response regulator	NA	NA	NA	NA	NA
AXM29133.1|2939513_2940464_+	glutathione synthase	NA	NA	NA	NA	NA
AXM29134.1|2940460_2941336_+	energy transducer TonB	NA	NA	NA	NA	NA
AXM29135.1|2941630_2942545_-	ADP-ribosylglycohydrolase family protein	NA	A0A1S6UB21	Serratia_phage	48.5	1.2e-63
AXM29136.1|2942541_2943261_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	tRNA	NA	NA	NA	NA
AXM29137.1|2943274_2945302_-	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	33.2	4.6e-95
AXM29138.1|2945501_2946026_-	hypothetical protein	NA	NA	NA	NA	NA
AXM29139.1|2946039_2948484_-	penicillin-binding protein 1B	NA	NA	NA	NA	NA
AXM29140.1|2948725_2950828_+	glycosyltransferase	NA	NA	NA	NA	NA
AXM30603.1|2951160_2952603_-	hypothetical protein	NA	NA	NA	NA	NA
AXM29141.1|2952920_2955107_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	NA	NA	NA	NA
AXM29142.1|2955396_2955477_+	pyrroloquinoline quinone precursor peptide PqqA	NA	NA	NA	NA	NA
AXM29143.1|2955560_2956460_+	pyrroloquinoline quinone biosynthesis protein PqqB	NA	NA	NA	NA	NA
AXM29144.1|2956456_2957209_+	pyrroloquinoline-quinone synthase	NA	NA	NA	NA	NA
AXM29145.1|2957205_2957484_+	pyrroloquinoline quinone biosynthesis protein PqqD	NA	NA	NA	NA	NA
AXM29146.1|2957480_2958599_+	pyrroloquinoline quinone biosynthesis protein PqqE	NA	NA	NA	NA	NA
AXM29147.1|2958661_2959174_+	hypothetical protein	NA	NA	NA	NA	NA
AXM29148.1|2959484_2960248_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
AXM29149.1|2960418_2961933_+	PhoPQ-regulated protein	NA	NA	NA	NA	NA
AXM29150.1|2963374_2966017_+	TonB-dependent receptor	NA	NA	NA	NA	NA
AXM29151.1|2966237_2970359_-	ATP-dependent RNA helicase HrpA	NA	A0A1V0SDF7	Indivirus	28.5	5.6e-47
AXM29152.1|2970460_2971006_+	DNA starvation/stationary phase protection protein	NA	A0A2H4N7L5	Lake_Baikal_phage	32.4	1.5e-16
AXM29153.1|2971221_2971449_-	hypothetical protein	NA	NA	NA	NA	NA
AXM29154.1|2971561_2973358_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	2.6e-81
AXM29155.1|2973496_2973994_+	hypothetical protein	NA	NA	NA	NA	NA
AXM29156.1|2974072_2974477_+	response regulator	NA	NA	NA	NA	NA
AXM29157.1|2975107_2975782_-	7-cyano-7-deazaguanine synthase	NA	A0A088F6S9	Vibrio_phage	34.7	6.4e-25
AXM29158.1|2976160_2977537_+|transposase	IS5 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	47.0	1.1e-58
AXM29159.1|2977603_2978366_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
>prophage 23
CP031458	Xanthomonas oryzae pv. oryzae strain JL28 chromosome, complete genome	4697691	3040938	3186872	4697691	tRNA,transposase	Ralstonia_phage(16.0%)	115	NA	NA
AXM29197.1|3040938_3043770_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SGW1	Hokovirus	22.2	4.1e-41
AXM29198.1|3043776_3044793_-	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
AXM29199.1|3044991_3046596_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
AXM29200.1|3046712_3046982_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
AXM29201.1|3047073_3048126_-	GTPase ObgE	NA	NA	NA	NA	NA
AXM29202.1|3048358_3048619_-	50S ribosomal protein L27	NA	NA	NA	NA	NA
AXM29203.1|3048631_3048952_-	50S ribosomal protein L21	NA	NA	NA	NA	NA
AXM29204.1|3049244_3052211_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	55.8	3.3e-307
AXM29205.1|3052207_3052615_+	acyl-CoA thioesterase	NA	NA	NA	NA	NA
AXM29206.1|3052728_3053193_-	copper chaperone PCu(A)C	NA	NA	NA	NA	NA
AXM29207.1|3053216_3053987_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AXM29208.1|3054057_3054963_+	acyl-CoA thioesterase II	NA	NA	NA	NA	NA
AXM29209.1|3055190_3055694_+	pathogenicity-like protein	NA	NA	NA	NA	NA
AXM29210.1|3055805_3056549_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
AXM30606.1|3056803_3057259_+	hypothetical protein	NA	NA	NA	NA	NA
AXM29211.1|3057403_3058202_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
AXM29212.1|3058244_3058826_-	calcium-binding protein	NA	NA	NA	NA	NA
AXM29213.1|3058886_3059801_+	arginyltransferase	NA	NA	NA	NA	NA
AXM29214.1|3059754_3061086_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
AXM29215.1|3061390_3062992_-	hypothetical protein	NA	NA	NA	NA	NA
AXM29216.1|3063437_3064514_+	DUF4432 family protein	NA	NA	NA	NA	NA
AXM29217.1|3064609_3065083_-	DUF3574 domain-containing protein	NA	NA	NA	NA	NA
AXM29218.1|3065318_3067754_+	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	22.5	2.6e-12
AXM30607.1|3068302_3068851_+	hypothetical protein	NA	NA	NA	NA	NA
AXM29219.1|3069076_3069835_+	trehalose-phosphatase	NA	NA	NA	NA	NA
AXM29220.1|3069879_3071658_+	glycoside hydrolase family 15 protein	NA	NA	NA	NA	NA
AXM29221.1|3071654_3073022_+	alpha,alpha-trehalose-phosphate synthase (UDP-forming)	NA	NA	NA	NA	NA
AXM29222.1|3073271_3073652_-	DUF393 domain-containing protein	NA	NA	NA	NA	NA
AXM30608.1|3073626_3074133_-	DUF4166 domain-containing protein	NA	NA	NA	NA	NA
AXM29223.1|3074153_3074960_-	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
AXM29224.1|3074967_3075963_-	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA	NA
AXM29225.1|3076083_3076965_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
AXM29226.1|3077122_3078781_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	38.0	1.2e-93
AXM29227.1|3079209_3079506_-	hypothetical protein	NA	NA	NA	NA	NA
AXM29228.1|3079825_3080701_-	succinate--CoA ligase subunit alpha	NA	NA	NA	NA	NA
AXM29229.1|3080725_3081895_-	succinyl-CoA ligase subunit beta	NA	NA	NA	NA	NA
AXM29230.1|3082128_3083742_+	sensor histidine kinase	NA	NA	NA	NA	NA
AXM29231.1|3084072_3085464_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
AXM29232.1|3085536_3085743_+	DUF2559 family protein	NA	NA	NA	NA	NA
AXM29233.1|3086322_3088056_-	type IV-A pilus assembly ATPase PilB	NA	NA	NA	NA	NA
AXM29234.1|3088090_3089617_-	hypothetical protein	NA	NA	NA	NA	NA
AXM29235.1|3089586_3090246_-	hypothetical protein	NA	NA	NA	NA	NA
AXM29236.1|3090226_3091816_-	hypothetical protein	NA	NA	NA	NA	NA
AXM29237.1|3091950_3092376_-	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
AXM30609.1|3092730_3093990_+	type II secretion system F family protein	NA	NA	NA	NA	NA
AXM29238.1|3093996_3094860_+	prepilin peptidase	NA	NA	NA	NA	NA
AXM29239.1|3094873_3095482_+	dephospho-CoA kinase	NA	NA	NA	NA	NA
AXM29240.1|3095552_3096872_+|transposase	IS701 family transposase	transposase	NA	NA	NA	NA
AXM29241.1|3097432_3097840_-	hypothetical protein	NA	NA	NA	NA	NA
AXM29242.1|3097718_3098675_-|transposase	IS30-like element IS1112a family transposase	transposase	Q9MBM9	Staphylococcus_prophage	34.9	1.1e-41
AXM29243.1|3099366_3100335_+|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	60.3	8.7e-100
AXM29244.1|3100504_3100873_-	hypothetical protein	NA	NA	NA	NA	NA
AXM29245.1|3103162_3104131_-|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	60.0	1.5e-99
AXM29246.1|3104670_3109161_-	type IV secretion protein Rhs	NA	NA	NA	NA	NA
AXM29247.1|3110458_3111778_+|transposase	IS701 family transposase	transposase	NA	NA	NA	NA
AXM29248.1|3111820_3112583_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
AXM29249.1|3112659_3114492_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.3	1.2e-30
AXM29250.1|3114623_3115214_-	plasmid pRiA4b ORF-3 family protein	NA	NA	NA	NA	NA
AXM29251.1|3115279_3118336_-	AcrB/AcrD/AcrF family protein	NA	NA	NA	NA	NA
AXM29252.1|3118332_3119436_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AXM29253.1|3119461_3120298_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
AXM30610.1|3120317_3121787_-	outer membrane channel protein	NA	NA	NA	NA	NA
AXM29254.1|3121892_3122582_+	DNA-binding response regulator	NA	Q6XM27	Feldmannia_irregularis_virus	28.3	3.6e-07
AXM29255.1|3122578_3123772_+	HAMP domain-containing protein	NA	W8CYF6	Bacillus_phage	23.9	5.2e-22
AXM29256.1|3123830_3125096_-	cation:proton antiporter	NA	NA	NA	NA	NA
AXM29257.1|3125242_3126919_-	serine hydrolase	NA	NA	NA	NA	NA
AXM29258.1|3126860_3127361_-	putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase	NA	NA	NA	NA	NA
AXM29259.1|3130280_3131003_-	pseudouridine synthase	NA	NA	NA	NA	NA
AXM29260.1|3131152_3133549_-	GGDEF domain-containing protein	NA	G3MA91	Bacillus_virus	30.2	3.8e-11
AXM29261.1|3133812_3135717_-	ATP-dependent RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	35.7	2.5e-58
AXM30611.1|3136393_3137056_+	hypothetical protein	NA	NA	NA	NA	NA
AXM29262.1|3137084_3137327_+	RNA-binding S4 domain-containing protein	NA	NA	NA	NA	NA
AXM29263.1|3137672_3138074_-	hypothetical protein	NA	NA	NA	NA	NA
AXM29264.1|3138099_3138633_-	DUF4019 domain-containing protein	NA	NA	NA	NA	NA
AXM29265.1|3139035_3139290_-	hypothetical protein	NA	NA	NA	NA	NA
AXM29266.1|3140750_3142214_+	DNA-3-methyladenine glycosylase 2 family protein	NA	NA	NA	NA	NA
AXM29267.1|3142210_3142756_+	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	A0A1S5V092	Saudi_moumouvirus	51.9	4.1e-14
AXM29268.1|3143106_3144075_-|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	60.3	8.7e-100
AXM29269.1|3145605_3147051_+	chloride channel protein	NA	A0A1X9I5Z9	Streptococcus_phage	31.5	4.9e-14
AXM29270.1|3147123_3148164_+	alcohol dehydrogenase	NA	NA	NA	NA	NA
AXM29271.1|3148296_3148479_-	30S ribosomal protein THX	NA	NA	NA	NA	NA
AXM30612.1|3148778_3149189_-	MerC domain-containing protein	NA	NA	NA	NA	NA
AXM29272.1|3151836_3154218_+	TonB-dependent receptor	NA	NA	NA	NA	NA
AXM29273.1|3154461_3155418_-|transposase	IS30 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	34.8	1.0e-39
AXM29274.1|3155469_3155880_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
AXM29275.1|3155978_3156704_-	OmpA family protein	NA	G3M9Z0	Bacillus_virus	33.9	1.4e-09
AXM30613.1|3156713_3156893_-	hypothetical protein	NA	NA	NA	NA	NA
AXM29276.1|3157120_3158575_-	deoxyribodipyrimidine photo-lyase	NA	A0A1V0S949	Catovirus	31.7	5.7e-47
AXM29277.1|3158641_3160072_-	replicative DNA helicase	NA	O80281	Escherichia_phage	53.4	8.5e-120
AXM29278.1|3160293_3160848_-	NADPH-dependent oxidoreductase	NA	A0A2P0ZL77	Lactobacillus_phage	35.3	1.1e-19
AXM29279.1|3161064_3163005_-	asparagine synthase (glutamine-hydrolyzing)	NA	A0A1B1ISV2	uncultured_Mediterranean_phage	30.5	4.4e-26
AXM29280.1|3163180_3163819_-	glutathione S-transferase family protein	NA	NA	NA	NA	NA
AXM30614.1|3166052_3167216_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AXM29281.1|3167373_3168165_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
AXM29282.1|3168310_3168526_+	hypothetical protein	NA	NA	NA	NA	NA
AXM29283.1|3168525_3169293_+	TatD family deoxyribonuclease	NA	NA	NA	NA	NA
AXM29284.1|3169354_3170185_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
AXM29285.1|3170257_3170686_+	hypothetical protein	NA	NA	NA	NA	NA
AXM29286.1|3170817_3171297_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
AXM29287.1|3171546_3171762_-	cold-shock protein	NA	A0A1X9IGI9	Lactococcus_phage	59.7	6.5e-16
AXM29288.1|3171728_3171962_-	hypothetical protein	NA	NA	NA	NA	NA
AXM29289.1|3171989_3172475_+	DUF456 domain-containing protein	NA	NA	NA	NA	NA
AXM29290.1|3174036_3174240_-	hypothetical protein	NA	NA	NA	NA	NA
AXM29291.1|3175017_3175476_-	cupin domain-containing protein	NA	NA	NA	NA	NA
AXM29292.1|3175881_3176388_-	transcriptional repressor	NA	NA	NA	NA	NA
AXM29293.1|3176401_3177805_-|tRNA	glutamate--tRNA ligase	tRNA	NA	NA	NA	NA
AXM29294.1|3177873_3178977_-	DUF3616 domain-containing protein	NA	NA	NA	NA	NA
AXM30615.1|3178998_3179730_-	nitrilase	NA	NA	NA	NA	NA
AXM29295.1|3179803_3180760_+|transposase	IS30 family transposase IS1112a	transposase	Q9MBM9	Staphylococcus_prophage	35.2	2.1e-42
AXM29296.1|3181058_3181646_-	GNAT family acetyltransferase	NA	NA	NA	NA	NA
AXM29297.1|3181876_3182689_+	peptidase C1	NA	NA	NA	NA	NA
AXM29298.1|3182719_3183883_-|transposase	IS5 family transposase	transposase	A0A077K814	Ralstonia_phage	61.2	2.6e-98
AXM29299.1|3184041_3184425_-	hypothetical protein	NA	NA	NA	NA	NA
AXM30616.1|3184940_3185753_+	peptidase C1	NA	NA	NA	NA	NA
AXM29300.1|3185813_3186872_+|transposase	IS630 family transposase	transposase	S5VXX4	Leptospira_phage	42.6	4.1e-71
>prophage 24
CP031458	Xanthomonas oryzae pv. oryzae strain JL28 chromosome, complete genome	4697691	3413515	3483030	4697691	protease,transposase	Xanthomonas_phage(40.0%)	47	NA	NA
AXM29453.1|3413515_3414751_+|transposase	ISL3 family transposase	transposase	NA	NA	NA	NA
AXM29454.1|3415172_3416561_-	amino acid permease	NA	NA	NA	NA	NA
AXM29455.1|3417316_3418258_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
AXM29456.1|3418571_3419336_-	LuxR family transcriptional regulator	NA	NA	NA	NA	NA
AXM29457.1|3419528_3420911_+	amino acid permease	NA	NA	NA	NA	NA
AXM29458.1|3421365_3422763_+|protease	serine protease	protease	NA	NA	NA	NA
AXM29459.1|3423009_3423195_-	hypothetical protein	NA	NA	NA	NA	NA
AXM29460.1|3423325_3423724_+	hypothetical protein	NA	NA	NA	NA	NA
AXM29461.1|3423868_3424873_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AXM29462.1|3424910_3426428_-	tryptophan 7-halogenase	NA	A0A1D7SEI2	Cyanophage	32.3	8.1e-52
AXM29463.1|3426468_3427515_-	cupin-like domain-containing protein	NA	NA	NA	NA	NA
AXM30642.1|3427525_3428278_-	peptide ABC transporter permease	NA	NA	NA	NA	NA
AXM29464.1|3428353_3428590_+	transcriptional regulator	NA	NA	NA	NA	NA
AXM29465.1|3428609_3431756_-	TonB-dependent receptor	NA	NA	NA	NA	NA
AXM29466.1|3432814_3434821_-	M1 family peptidase	NA	NA	NA	NA	NA
AXM29467.1|3435040_3435487_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
AXM29468.1|3437466_3438633_-	glutathionylspermidine synthase family protein	NA	B2ZXR7	Ralstonia_phage	42.1	5.8e-74
AXM29469.1|3438634_3439207_-	DUF1190 domain-containing protein	NA	A0A191ZBZ0	Erwinia_phage	27.7	1.1e-09
AXM29470.1|3439219_3439624_-	DUF350 domain-containing protein	NA	NA	NA	NA	NA
AXM29471.1|3439661_3440333_-	DUF2491 family protein	NA	NA	NA	NA	NA
AXM29472.1|3440335_3441418_-	potassium channel protein	NA	NA	NA	NA	NA
AXM29473.1|3441443_3442217_-	PspA/IM30 family protein	NA	NA	NA	NA	NA
AXM29474.1|3442229_3442646_-	DUF2170 family protein	NA	NA	NA	NA	NA
AXM29475.1|3442826_3443426_-	pyridoxine/pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
AXM29476.1|3443592_3444135_+	shikimate kinase	NA	NA	NA	NA	NA
AXM30643.1|3444131_3445244_+	3-dehydroquinate synthase	NA	NA	NA	NA	NA
AXM29477.1|3445545_3445797_+	hypothetical protein	NA	NA	NA	NA	NA
AXM29478.1|3445811_3446876_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
AXM29479.1|3448347_3452064_+	avirulence protein	NA	NA	NA	NA	NA
AXM29480.1|3452332_3452527_+	hypothetical protein	NA	A0A1W6DXV7	Xanthomonas_phage	80.6	8.8e-20
AXM29481.1|3452530_3452830_+	hypothetical protein	NA	A0A1W6DY99	Xanthomonas_phage	92.4	6.4e-46
AXM29482.1|3457770_3457965_+	hypothetical protein	NA	A0A1W6DXV7	Xanthomonas_phage	82.3	3.9e-20
AXM29483.1|3457968_3458268_+	hypothetical protein	NA	A0A1W6DY99	Xanthomonas_phage	92.4	1.4e-45
AXM29484.1|3458491_3461500_+	avirulence protein	NA	NA	NA	NA	NA
AXM29485.1|3461673_3461895_+|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
AXM29486.1|3461891_3462563_+|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	38.9	5.2e-27
AXM29487.1|3462584_3463454_+|transposase	IS30 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	35.2	1.4e-29
AXM29488.1|3463950_3465405_-	hypothetical protein	NA	NA	NA	NA	NA
AXM29489.1|3467415_3468705_+	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA	NA
AXM29490.1|3471951_3472401_-	azurin	NA	NA	NA	NA	NA
AXM29491.1|3473843_3474347_-	hypothetical protein	NA	NA	NA	NA	NA
AXM29492.1|3474371_3474797_-	cytochrome C biogenesis protein CcdA	NA	NA	NA	NA	NA
AXM29493.1|3474793_3476377_-	flavin monoamine oxidase family protein	NA	NA	NA	NA	NA
AXM29494.1|3477937_3478555_+	hydrolase	NA	NA	NA	NA	NA
AXM29495.1|3478799_3480026_-	acetylornithine transaminase	NA	A0A1V0SKB7	Klosneuvirus	25.1	4.0e-17
AXM29496.1|3480098_3480971_+	ion transporter	NA	NA	NA	NA	NA
AXM29497.1|3482231_3483030_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
>prophage 25
CP031458	Xanthomonas oryzae pv. oryzae strain JL28 chromosome, complete genome	4697691	3486183	3554148	4697691	transposase	Ralstonia_phage(14.29%)	55	NA	NA
AXM29500.1|3486183_3487167_+|transposase	IS5 family transposase	transposase	A0A077K814	Ralstonia_phage	60.8	6.3e-98
AXM30644.1|3487601_3488489_+	30S ribosomal protein S6--L-glutamate ligase	NA	A0A1D7SR78	Cyanophage	32.7	1.2e-31
AXM30645.1|3488702_3489092_+	hypothetical protein	NA	NA	NA	NA	NA
AXM29501.1|3489171_3489849_+	DNA-binding response regulator	NA	Q6XM27	Feldmannia_irregularis_virus	27.4	7.4e-05
AXM29502.1|3490311_3491631_+	sensor histidine kinase	NA	NA	NA	NA	NA
AXM29503.1|3491740_3492706_-|transposase	IS1595 family transposase	transposase	NA	NA	NA	NA
AXM29504.1|3492794_3493558_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
AXM30646.1|3493945_3494947_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
AXM29505.1|3495302_3495599_-	hypothetical protein	NA	NA	NA	NA	NA
AXM30648.1|3498817_3499591_+	endonuclease	NA	NA	NA	NA	NA
AXM30647.1|3499604_3500435_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AXM29506.1|3500505_3501282_+	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXM29507.1|3501292_3501985_+	molybdate ABC transporter permease subunit	NA	NA	NA	NA	NA
AXM29508.1|3501984_3502599_+	molybdenum ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.0	2.1e-19
AXM29509.1|3502941_3503526_-	hypothetical protein	NA	NA	NA	NA	NA
AXM29510.1|3503522_3504839_-	TonB family protein	NA	NA	NA	NA	NA
AXM29511.1|3504828_3505194_-	BlaI/MecI/CopY family transcriptional regulator	NA	NA	NA	NA	NA
AXM30649.1|3505293_3506655_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
AXM29512.1|3506672_3507371_-	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	35.0	9.8e-29
AXM29513.1|3508037_3508877_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
AXM29514.1|3508876_3509551_-	iron-containing redox enzyme family protein	NA	NA	NA	NA	NA
AXM29515.1|3509547_3511047_-	long-chain acyl-CoA synthetase	NA	NA	NA	NA	NA
AXM30650.1|3511043_3511691_-	thermostable hemolysin	NA	NA	NA	NA	NA
AXM29516.1|3511866_3513825_+	acetyl-CoA hydrolase	NA	NA	NA	NA	NA
AXM29517.1|3513959_3515135_+	hypothetical protein	NA	NA	NA	NA	NA
AXM29518.1|3515254_3517969_+	TonB-dependent receptor	NA	NA	NA	NA	NA
AXM29519.1|3518288_3519281_+	murein L,D-transpeptidase	NA	NA	NA	NA	NA
AXM29520.1|3519283_3520000_+	M23 family peptidase	NA	A0A0M5M794	Arthrobacter_phage	34.2	2.7e-05
AXM29521.1|3520818_3522819_-	transketolase	NA	NA	NA	NA	NA
AXM29522.1|3523038_3524319_-	dicarboxylate/amino acid:cation symporter	NA	NA	NA	NA	NA
AXM29523.1|3524516_3524834_-	hypothetical protein	NA	NA	NA	NA	NA
AXM29524.1|3525129_3526887_-	protein BatD	NA	NA	NA	NA	NA
AXM29525.1|3526883_3528686_-	VWA domain-containing protein	NA	NA	NA	NA	NA
AXM29526.1|3528682_3529690_-	VWA domain-containing protein	NA	NA	NA	NA	NA
AXM29527.1|3529686_3530148_-	DUF4381 domain-containing protein	NA	NA	NA	NA	NA
AXM29528.1|3530150_3531113_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
AXM29529.1|3531133_3532153_-	MoxR family ATPase	NA	NA	NA	NA	NA
AXM29530.1|3532775_3533810_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
AXM29531.1|3533880_3535116_-|transposase	ISL3 family transposase	transposase	NA	NA	NA	NA
AXM29532.1|3535258_3536056_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
AXM29533.1|3536127_3538077_-	type IV pilus secretin PilQ family protein	NA	NA	NA	NA	NA
AXM29534.1|3538096_3538630_-	fimbrial protein	NA	NA	NA	NA	NA
AXM29535.1|3538626_3539292_-	fimbrial protein	NA	NA	NA	NA	NA
AXM29536.1|3539288_3540047_-	fimbrial protein	NA	NA	NA	NA	NA
AXM29537.1|3540046_3541105_-	pilus assembly protein PilM	NA	NA	NA	NA	NA
AXM29538.1|3541227_3543750_+	penicillin-binding protein 1A	NA	NA	NA	NA	NA
AXM29539.1|3544059_3544710_+	hypothetical protein	NA	NA	NA	NA	NA
AXM30651.1|3545087_3546377_-	citrate synthase	NA	NA	NA	NA	NA
AXM29540.1|3546590_3546833_-	50S ribosomal protein L31 type B	NA	NA	NA	NA	NA
AXM29541.1|3546904_3547843_-	nucleoside hydrolase	NA	NA	NA	NA	NA
AXM29542.1|3547968_3550122_-	ATP-dependent DNA helicase RecG	NA	NA	NA	NA	NA
AXM29543.1|3550142_3550523_-	RidA family protein	NA	NA	NA	NA	NA
AXM29544.1|3550602_3552774_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A2I2L310	Orpheovirus	38.8	2.8e-13
AXM29545.1|3552902_3553202_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
AXM29546.1|3553349_3554148_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
>prophage 26
CP031458	Xanthomonas oryzae pv. oryzae strain JL28 chromosome, complete genome	4697691	3574119	3645140	4697691	integrase,transposase	Bacillus_phage(22.22%)	59	3629994:3630009	3645054:3645069
AXM30656.1|3574119_3575222_-|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	41.4	2.5e-42
AXM29564.1|3575610_3575775_+	alpha-mannosidase	NA	NA	NA	NA	NA
AXM29565.1|3575950_3578260_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
AXM29566.1|3578457_3579831_-	dicarboxylate/amino acid:cation symporter	NA	NA	NA	NA	NA
AXM29567.1|3580121_3581294_+	porin	NA	NA	NA	NA	NA
AXM29568.1|3581615_3584261_+	response regulator	NA	B5LWN0	Feldmannia_species_virus	28.1	4.4e-13
AXM29569.1|3584576_3585926_+	MFS transporter	NA	Q6JIH2	Burkholderia_virus	36.3	1.5e-62
AXM29570.1|3585922_3586702_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXM29571.1|3586693_3587596_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXM29572.1|3587904_3588543_+	aldo/keto reductase	NA	NA	NA	NA	NA
AXM29573.1|3588539_3589394_+	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
AXM30657.1|3589594_3590233_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AXM29574.1|3590272_3591322_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXM29575.1|3591321_3592707_-	sensor histidine kinase	NA	W8CYF6	Bacillus_phage	23.7	8.3e-11
AXM29576.1|3592699_3593401_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AXM30658.1|3593656_3594850_+	porin	NA	NA	NA	NA	NA
AXM29577.1|3595077_3596406_+	citrate transporter	NA	NA	NA	NA	NA
AXM29578.1|3596517_3597258_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
AXM29579.1|3597498_3598530_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AXM29580.1|3598770_3600102_-	MFS transporter	NA	NA	NA	NA	NA
AXM29581.1|3600371_3602816_+	TonB-dependent receptor	NA	NA	NA	NA	NA
AXM29582.1|3602850_3604767_+	amylosucrase	NA	NA	NA	NA	NA
AXM29583.1|3604933_3605614_-	type 1 glutamine amidotransferase domain-containing protein	NA	NA	NA	NA	NA
AXM29584.1|3605766_3607029_-	flavohemoglobin expression-modulating QEGLA motif protein	NA	NA	NA	NA	NA
AXM29585.1|3607028_3608120_-	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
AXM29586.1|3608273_3609545_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
AXM29587.1|3609544_3610183_+	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA	NA
AXM29588.1|3610505_3611177_+	methyltransferase	NA	NA	NA	NA	NA
AXM29589.1|3611478_3612255_-	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
AXM29590.1|3612315_3613242_+	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA	NA
AXM29591.1|3613573_3613909_+	DUF4433 domain-containing protein	NA	NA	NA	NA	NA
AXM29592.1|3613952_3615272_-|transposase	IS701 family transposase	transposase	NA	NA	NA	NA
AXM29593.1|3615353_3615704_+	DUF4433 domain-containing protein	NA	NA	NA	NA	NA
AXM29594.1|3616171_3617140_+|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	60.3	8.7e-100
AXM29595.1|3617968_3619204_-|transposase	ISL3-like element ISXoo13 family transposase	transposase	NA	NA	NA	NA
AXM29596.1|3620192_3621794_+	rhamnogalacturonase B	NA	NA	NA	NA	NA
AXM30659.1|3622410_3623157_-	cellulase	NA	NA	NA	NA	NA
AXM29597.1|3623629_3624388_-	cellulase	NA	NA	NA	NA	NA
AXM29598.1|3624904_3625420_-	peptide deformylase	NA	NA	NA	NA	NA
AXM29599.1|3626935_3628804_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
AXM29600.1|3628842_3629796_+	MoxR family ATPase	NA	NA	NA	NA	NA
AXM29601.1|3629801_3630758_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
3629994:3630009	attL	CTGCTCGCACTGCTGC	NA	NA	NA	NA
AXM29602.1|3630750_3632703_+	DUF3488 domain-containing protein	NA	NA	NA	NA	NA
AXM29603.1|3632699_3633233_+	hypothetical protein	NA	NA	NA	NA	NA
AXM29604.1|3633352_3633703_-	histidine triad nucleotide-binding protein	NA	NA	NA	NA	NA
AXM29605.1|3633804_3634398_-	recombination protein RecR	NA	NA	NA	NA	NA
AXM29606.1|3634495_3634816_-	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
AXM29607.1|3634822_3636919_-	DNA polymerase III subunit gamma/tau	NA	E7DN81	Pneumococcus_phage	40.7	4.1e-46
AXM29608.1|3637480_3637927_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
AXM29609.1|3637923_3638169_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
AXM29610.1|3638165_3638663_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
AXM29611.1|3638687_3639047_-	DUF4440 domain-containing protein	NA	NA	NA	NA	NA
AXM29612.1|3639064_3640096_-	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
AXM29613.1|3640095_3640845_-	MBL fold metallo-hydrolase	NA	A0A0A0RUN7	Bacillus_phage	26.0	2.4e-09
AXM29614.1|3640844_3641594_-	3-deoxy-D-manno-octulosonic acid kinase	NA	NA	NA	NA	NA
AXM29615.1|3641614_3642664_+	lipopolysaccharide heptosyltransferase family protein	NA	NA	NA	NA	NA
AXM29616.1|3642874_3643279_-	hypothetical protein	NA	A0A1C9C5K8	Heterosigma_akashiwo_virus	35.9	5.0e-17
AXM30660.1|3643389_3644076_+|integrase	integrase	integrase	A0A077KET4	Ralstonia_phage	51.8	2.3e-54
AXM29617.1|3644174_3645140_-|transposase	IS1595 family transposase	transposase	NA	NA	NA	NA
3645054:3645069	attR	CTGCTCGCACTGCTGC	NA	NA	NA	NA
>prophage 27
CP031458	Xanthomonas oryzae pv. oryzae strain JL28 chromosome, complete genome	4697691	3675682	3736317	4697691	protease,transposase	Bacillus_virus(12.5%)	39	NA	NA
AXM29638.1|3675682_3676969_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	59.9	9.0e-137
AXM29639.1|3677093_3677720_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	57.4	1.0e-56
AXM29640.1|3677812_3679105_-	trigger factor	NA	NA	NA	NA	NA
AXM29641.1|3682422_3683184_+	hypothetical protein	NA	NA	NA	NA	NA
AXM29642.1|3683327_3684335_-	isocitrate dehydrogenase	NA	NA	NA	NA	NA
AXM29643.1|3684598_3685564_+|transposase	IS1595-like element ISXo5 family transposase	transposase	NA	NA	NA	NA
AXM29644.1|3685564_3686318_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
AXM29645.1|3688137_3688869_+	glycerophosphodiester phosphodiesterase	NA	A0A0S2MYI4	Enterococcus_phage	37.5	1.1e-06
AXM29646.1|3688901_3689664_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
AXM29647.1|3689658_3689901_+	glycerophosphodiester phosphodiesterase	NA	NA	NA	NA	NA
AXM29648.1|3690449_3690911_+	cell wall hydrolase	NA	NA	NA	NA	NA
AXM29649.1|3690887_3691169_-	hypothetical protein	NA	NA	NA	NA	NA
AXM29650.1|3691171_3692140_+|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	60.0	4.3e-99
AXM29651.1|3694808_3695571_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
AXM29652.1|3695639_3697217_-	hypothetical protein	NA	NA	NA	NA	NA
AXM30662.1|3697518_3698484_-|transposase	IS1595-like element ISXo5 family transposase	transposase	NA	NA	NA	NA
AXM30663.1|3699546_3700470_-|transposase	IS30 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	33.1	1.3e-36
AXM29653.1|3701215_3702535_+|transposase	IS701 family transposase	transposase	NA	NA	NA	NA
AXM29654.1|3703517_3704753_+|transposase	ISL3-like element ISXoo13 family transposase	transposase	NA	NA	NA	NA
AXM30664.1|3708542_3709433_+	hypothetical protein	NA	NA	NA	NA	NA
AXM29655.1|3710046_3711282_-|transposase	ISL3-like element ISXoo13 family transposase	transposase	NA	NA	NA	NA
AXM29656.1|3711796_3712899_-|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	41.4	1.6e-41
AXM29657.1|3713605_3714124_+	disulfide bond formation protein B	NA	NA	NA	NA	NA
AXM29658.1|3714652_3716776_-	TonB-dependent receptor	NA	NA	NA	NA	NA
AXM29659.1|3717023_3718406_+	3-deoxy-7-phosphoheptulonate synthase class II	NA	NA	NA	NA	NA
AXM29660.1|3718506_3719634_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
AXM29661.1|3720556_3721027_-	DUF2127 domain-containing protein	NA	NA	NA	NA	NA
AXM29662.1|3721045_3722875_-	translational GTPase TypA	NA	NA	NA	NA	NA
AXM29663.1|3723119_3723614_+	peptidylprolyl isomerase	NA	A0A1V0SCU1	Indivirus	52.3	5.5e-26
AXM29664.1|3723729_3724716_+	malate dehydrogenase	NA	NA	NA	NA	NA
AXM29665.1|3724798_3725413_-	glutathione S-transferase	NA	NA	NA	NA	NA
AXM29666.1|3727394_3728279_-	hypothetical protein	NA	NA	NA	NA	NA
AXM29667.1|3728425_3729022_-|protease	ATP-dependent protease	protease	NA	NA	NA	NA
AXM30665.1|3729021_3730380_-	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase	NA	NA	NA	NA	NA
AXM29668.1|3730746_3731310_-	adenylate kinase	NA	A0A1B4XWI3	Tenacibaculum_phage	31.4	3.6e-13
AXM29669.1|3731469_3732726_+	6-phosphofructokinase	NA	NA	NA	NA	NA
AXM29670.1|3734405_3734897_-	hypothetical protein	NA	NA	NA	NA	NA
AXM30666.1|3735181_3735355_+	hypothetical protein	NA	NA	NA	NA	NA
AXM29671.1|3735351_3736317_-|transposase	IS1595-like element ISXo5 family transposase	transposase	NA	NA	NA	NA
>prophage 28
CP031458	Xanthomonas oryzae pv. oryzae strain JL28 chromosome, complete genome	4697691	3775038	3802644	4697691	protease,transposase	Acidithiobacillus_phage(11.11%)	21	NA	NA
AXM30669.1|3775038_3776415_+|transposase	IS5 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	54.1	4.3e-76
AXM29697.1|3777501_3780174_-	M1 family peptidase	NA	A0A0P0IY26	Acinetobacter_phage	28.0	2.6e-77
AXM29698.1|3780499_3781792_-	adenylosuccinate synthase	NA	W5S5V7	Pithovirus	37.5	8.4e-74
AXM29699.1|3782129_3782315_-	DUF2065 family protein	NA	NA	NA	NA	NA
AXM29700.1|3782608_3783472_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
AXM29701.1|3783471_3784599_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
AXM29702.1|3785228_3785615_-	response regulator	NA	W8CYM9	Bacillus_phage	31.8	9.6e-10
AXM29703.1|3785854_3786754_-	J domain-containing protein	NA	A0A2L0UZR4	Agrobacterium_phage	27.7	5.9e-18
AXM29704.1|3787164_3787641_-	Hsp20/alpha crystallin family protein	NA	NA	NA	NA	NA
AXM29705.1|3787803_3788286_+	peroxiredoxin	NA	A0A1D8KSL1	Synechococcus_phage	36.2	3.1e-21
AXM29706.1|3788328_3788889_+	bacterioferritin	NA	NA	NA	NA	NA
AXM29707.1|3789022_3789985_-|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	35.1	1.7e-42
AXM29708.1|3790329_3791649_-|transposase	IS701 family transposase	transposase	NA	NA	NA	NA
AXM29709.1|3791719_3792256_-	hypothetical protein	NA	NA	NA	NA	NA
AXM29710.1|3792212_3792434_-	hypothetical protein	NA	NA	NA	NA	NA
AXM29711.1|3792759_3793707_-	glycerophosphodiester phosphodiesterase	NA	M1HTS7	Paramecium_bursaria_Chlorella_virus	28.5	4.9e-07
AXM29712.1|3793881_3796869_-	TonB-dependent receptor	NA	NA	NA	NA	NA
AXM29713.1|3797848_3798031_+	hypothetical protein	NA	NA	NA	NA	NA
AXM29714.1|3798140_3799139_-	nucleoside hydrolase	NA	NA	NA	NA	NA
AXM29715.1|3799217_3801434_-	TonB-dependent receptor	NA	NA	NA	NA	NA
AXM29716.1|3801675_3802644_+|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	60.3	6.6e-100
>prophage 29
CP031458	Xanthomonas oryzae pv. oryzae strain JL28 chromosome, complete genome	4697691	3825700	3901049	4697691	tRNA,transposase	Ralstonia_phage(20.0%)	49	NA	NA
AXM29736.1|3825700_3826666_-|transposase	IS1595 family transposase	transposase	NA	NA	NA	NA
AXM29737.1|3826777_3829069_+	CRISPR-associated helicase/endonuclease Cas3	NA	NA	NA	NA	NA
AXM29738.1|3829196_3829871_+	type I-C CRISPR-associated protein Cas5	NA	NA	NA	NA	NA
AXM29739.1|3829867_3831712_+	type I-C CRISPR-associated protein Cas8c/Csd1	NA	NA	NA	NA	NA
AXM29740.1|3831708_3832575_+	type I-C CRISPR-associated protein Cas7/Csd2	NA	NA	NA	NA	NA
AXM29741.1|3832594_3833227_+	CRISPR-associated protein Cas4	NA	NA	NA	NA	NA
AXM29742.1|3833229_3834264_+	type I-C CRISPR-associated endonuclease Cas1	NA	NA	NA	NA	NA
AXM29743.1|3834278_3834569_+	CRISPR-associated endonuclease Cas2	NA	NA	NA	NA	NA
AXM29744.1|3842604_3843444_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
AXM29745.1|3844054_3845212_+	aminoglycoside phosphotransferase family protein	NA	NA	NA	NA	NA
AXM29746.1|3845247_3847410_+	TonB-dependent receptor	NA	NA	NA	NA	NA
AXM29747.1|3847785_3848361_+	nicotinamide riboside transporter PnuC	NA	NA	NA	NA	NA
AXM29748.1|3848466_3849195_+	UTRA domain-containing protein	NA	NA	NA	NA	NA
AXM29749.1|3849611_3850451_-	glycosyltransferase	NA	NA	NA	NA	NA
AXM29750.1|3850447_3852760_-	type II secretion system protein GspD	NA	A7BJX1	Enterobacteria_phage	23.5	5.2e-10
AXM29751.1|3852756_3853566_-	general secretion pathway protein GspN	NA	NA	NA	NA	NA
AXM29752.1|3853555_3854209_-	general secretion pathway protein GspM	NA	NA	NA	NA	NA
AXM29753.1|3854192_3855314_-	general secretion pathway protein GspL	NA	NA	NA	NA	NA
AXM29754.1|3855310_3856162_-	general secretion pathway protein GspK	NA	NA	NA	NA	NA
AXM29755.1|3856158_3856794_-	type II secretion system protein J	NA	NA	NA	NA	NA
AXM29756.1|3856790_3857207_-	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
AXM29757.1|3857203_3857713_-	type II secretion system protein GspH	NA	NA	NA	NA	NA
AXM30673.1|3857722_3858154_-	type II secretion system protein GspG	NA	NA	NA	NA	NA
AXM29758.1|3858421_3859639_-	type II secretion system F family protein	NA	NA	NA	NA	NA
AXM29759.1|3859638_3859818_-	hypothetical protein	NA	NA	NA	NA	NA
AXM29760.1|3859814_3861554_-	type II secretion system protein GspE	NA	NA	NA	NA	NA
AXM29761.1|3862377_3863334_-|transposase	IS30 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	34.9	2.4e-41
AXM29762.1|3864832_3868630_-	hypothetical protein	NA	NA	NA	NA	NA
AXM29763.1|3869086_3869350_-	hypothetical protein	NA	NA	NA	NA	NA
AXM29764.1|3869607_3873660_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	56.9	7.5e-121
AXM29765.1|3874058_3874856_-	DsbC family protein	NA	NA	NA	NA	NA
AXM29766.1|3875310_3876282_-	site-specific tyrosine recombinase XerD	NA	G1JX48	Mycobacterium_phage	27.9	6.4e-18
AXM29767.1|3876708_3877176_+	RDD family protein	NA	NA	NA	NA	NA
AXM29768.1|3877607_3878576_-|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	60.0	4.3e-99
AXM30674.1|3878750_3879857_-	LPS export ABC transporter permease LptG	NA	NA	NA	NA	NA
AXM29769.1|3879853_3880936_-	LPS export ABC transporter permease LptF	NA	NA	NA	NA	NA
AXM29770.1|3881043_3882516_+	leucyl aminopeptidase	NA	Q6GYZ8	Mycoplasma_phage	37.2	6.2e-49
AXM29771.1|3882515_3882821_+	hypothetical protein	NA	NA	NA	NA	NA
AXM29772.1|3882861_3883287_+	DNA polymerase III subunit chi	NA	NA	NA	NA	NA
AXM29773.1|3883494_3886437_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	34.8	6.4e-130
AXM29774.1|3887373_3888475_+|transposase	IS3-like element ISXo17 family transposase	transposase	S5WIU1	Leptospira_phage	40.7	7.2e-42
AXM29775.1|3888663_3888978_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
AXM29776.1|3889629_3890428_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
AXM29777.1|3892017_3893058_+	pectate lyase	NA	NA	NA	NA	NA
AXM30675.1|3893324_3895370_-	lytic murein transglycosylase	NA	A0A0H3V0Q1	Geobacillus_virus	36.7	8.2e-15
AXM29778.1|3895602_3896922_+|transposase	IS701 family transposase	transposase	NA	NA	NA	NA
AXM29779.1|3897071_3898040_+|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	60.0	9.6e-99
AXM29780.1|3898252_3899572_-|transposase	IS701 family transposase	transposase	NA	NA	NA	NA
AXM29781.1|3899729_3901049_-|transposase	IS701 family transposase	transposase	NA	NA	NA	NA
>prophage 30
CP031458	Xanthomonas oryzae pv. oryzae strain JL28 chromosome, complete genome	4697691	3917944	3975919	4697691	transposase	Enterobacteria_phage(25.0%)	54	NA	NA
AXM29797.1|3917944_3919291_+	phosphomannomutase	NA	A0A127AWJ1	Bacillus_phage	26.9	1.5e-33
AXM29798.1|3919337_3920741_+	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	NA	A0A1V0SH58	Hokovirus	29.6	2.5e-47
AXM29799.1|3920857_3921766_-	dTDP-4-dehydrorhamnose reductase	NA	I7HXC9	Enterobacteria_phage	35.1	1.8e-27
AXM29800.1|3921762_3922320_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	47.5	2.3e-44
AXM29801.1|3922316_3923204_-	glucose-1-phosphate thymidylyltransferase	NA	I7I009	Enterobacteria_phage	58.2	2.2e-94
AXM29802.1|3923259_3924315_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	48.0	4.3e-84
AXM29803.1|3924540_3925287_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
AXM29804.1|3925286_3926228_+	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA	NA
AXM29805.1|3926450_3927269_+	ABC transporter permease	NA	NA	NA	NA	NA
AXM29806.1|3927258_3928572_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.6	3.8e-13
AXM30678.1|3929101_3930286_-|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	45.4	1.0e-41
AXM29807.1|3930601_3931921_-|transposase	IS701 family transposase	transposase	NA	NA	NA	NA
AXM29808.1|3932007_3933060_-	acyltransferase	NA	A9YX16	Burkholderia_phage	33.9	1.5e-41
AXM29809.1|3933065_3934229_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
AXM29810.1|3934219_3934510_-	hypothetical protein	NA	NA	NA	NA	NA
AXM29811.1|3934530_3935457_-	glycosyltransferase	NA	NA	NA	NA	NA
AXM29812.1|3936488_3937565_-	NAD-dependent epimerase/dehydratase family protein	NA	A0A1V0SG19	Hokovirus	21.8	4.9e-11
AXM29813.1|3937599_3938400_-	FkbM family methyltransferase	NA	H8ZJI6	Ostreococcus_tauri_virus	28.0	3.5e-06
AXM29814.1|3938446_3939640_-	cystathionine gamma-synthase	NA	NA	NA	NA	NA
AXM30679.1|3939730_3941101_-	pyridoxal-phosphate dependent enzyme	NA	A0A1X9I5F1	Streptococcus_phage	38.8	2.6e-49
AXM29815.1|3941342_3941561_-	DUF465 domain-containing protein	NA	NA	NA	NA	NA
AXM29816.1|3941902_3942793_-	hypothetical protein	NA	NA	NA	NA	NA
AXM29817.1|3942789_3943173_-	DUF4398 domain-containing protein	NA	NA	NA	NA	NA
AXM29818.1|3943265_3944405_+	PilT/PilU family type 4a pilus ATPase	NA	NA	NA	NA	NA
AXM29819.1|3944743_3945370_-	maleylacetoacetate isomerase	NA	NA	NA	NA	NA
AXM30680.1|3945413_3946403_-	FAA hydrolase family protein	NA	NA	NA	NA	NA
AXM29820.1|3946564_3946690_-	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
AXM29821.1|3946782_3948165_+	RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	36.3	1.4e-55
AXM30682.1|3948436_3948616_-	GTP-binding protein	NA	NA	NA	NA	NA
AXM30681.1|3948577_3948931_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
AXM30683.1|3949123_3949459_+	hypothetical protein	NA	NA	NA	NA	NA
AXM29822.1|3949573_3950248_-	ATP-dependent dethiobiotin synthetase BioD	NA	NA	NA	NA	NA
AXM29823.1|3950572_3951055_+	GAF domain-containing protein	NA	NA	NA	NA	NA
AXM29824.1|3951051_3951450_+	transcriptional regulator	NA	NA	NA	NA	NA
AXM29825.1|3951761_3952412_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AXM29826.1|3952553_3953633_-	DNA polymerase IV	NA	NA	NA	NA	NA
AXM29827.1|3953632_3953980_-	hypothetical protein	NA	NA	NA	NA	NA
AXM29828.1|3953978_3954494_+	beta-hydroxydecanoyl-ACP dehydratase	NA	NA	NA	NA	NA
AXM29829.1|3954493_3955702_+	beta-ketoacyl-ACP synthase I	NA	NA	NA	NA	NA
AXM29830.1|3955815_3956637_-	hypothetical protein	NA	NA	NA	NA	NA
AXM29831.1|3956810_3958835_-	oligopeptidase A	NA	NA	NA	NA	NA
AXM29832.1|3958878_3959982_-	PLP-dependent cysteine synthase family protein	NA	NA	NA	NA	NA
AXM29833.1|3960117_3960534_+	copper homeostasis protein	NA	NA	NA	NA	NA
AXM29834.1|3960620_3962468_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
AXM29835.1|3962464_3963571_+	copper resistance protein B	NA	NA	NA	NA	NA
AXM29836.1|3963746_3964715_-|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	60.0	1.5e-99
AXM29837.1|3964887_3965412_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
AXM30684.1|3965628_3966663_-|transposase	IS630 family transposase	transposase	S5VXX4	Leptospira_phage	32.8	8.0e-43
AXM29838.1|3966778_3967542_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
AXM29839.1|3967574_3968150_-	hypothetical protein	NA	NA	NA	NA	NA
AXM29840.1|3968381_3968855_-	hypothetical protein	NA	NA	NA	NA	NA
AXM29841.1|3969236_3971066_-	glutamine--fructose-6-phosphate transaminase (isomerizing)	NA	A7IW18	Paramecium_bursaria_Chlorella_virus	43.5	1.3e-133
AXM30685.1|3971273_3972545_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AXM29842.1|3974953_3975919_+|transposase	IS1595-like element ISXo5 family transposase	transposase	NA	NA	NA	NA
>prophage 31
CP031458	Xanthomonas oryzae pv. oryzae strain JL28 chromosome, complete genome	4697691	4064845	4128599	4697691	tRNA,integrase,transposase	Staphylococcus_phage(22.22%)	55	4063625:4063641	4109672:4109688
4063625:4063641	attL	CAAGCTGGTGCGCGCCG	NA	NA	NA	NA
AXM29919.1|4064845_4065643_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
AXM29920.1|4067287_4067602_+	YkgJ family cysteine cluster protein	NA	NA	NA	NA	NA
AXM29921.1|4067611_4067833_+	hypothetical protein	NA	NA	NA	NA	NA
AXM29922.1|4068253_4068466_-	hypothetical protein	NA	NA	NA	NA	NA
AXM29923.1|4068792_4069542_+	DUF3348 domain-containing protein	NA	NA	NA	NA	NA
AXM29924.1|4069552_4072210_+	DUF802 domain-containing protein	NA	NA	NA	NA	NA
AXM29925.1|4072206_4072881_+	hypothetical protein	NA	NA	NA	NA	NA
AXM29926.1|4072877_4073543_+	DUF2894 domain-containing protein	NA	NA	NA	NA	NA
AXM29927.1|4073627_4075769_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
AXM29928.1|4075858_4077127_-	DUF3526 domain-containing protein	NA	NA	NA	NA	NA
AXM29929.1|4077126_4078563_-	DUF3526 domain-containing protein	NA	NA	NA	NA	NA
AXM29930.1|4078573_4079296_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.6	1.2e-16
AXM29931.1|4080534_4081500_+|transposase	IS1595-like element ISXo5 family transposase	transposase	NA	NA	NA	NA
AXM29932.1|4081622_4081826_-	hypothetical protein	NA	NA	NA	NA	NA
AXM29933.1|4081822_4082212_-	hypothetical protein	NA	NA	NA	NA	NA
AXM29934.1|4082280_4083516_+|transposase	ISL3-like element ISXoo13 family transposase	transposase	NA	NA	NA	NA
AXM30694.1|4085451_4085697_+	hypothetical protein	NA	NA	NA	NA	NA
AXM29935.1|4085693_4085966_+	hypothetical protein	NA	NA	NA	NA	NA
AXM29936.1|4085962_4086169_+	hypothetical protein	NA	NA	NA	NA	NA
AXM29937.1|4086126_4086390_+	hypothetical protein	NA	V9IQX6	Stenotrophomonas_phage	71.4	7.2e-17
AXM29938.1|4086302_4087577_+|integrase	integrase	integrase	V9IQN0	Stenotrophomonas_phage	50.3	1.4e-110
AXM29939.1|4088205_4088526_-	hypothetical protein	NA	NA	NA	NA	NA
AXM29940.1|4088718_4090593_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	35.5	1.8e-37
AXM29941.1|4090701_4091142_-|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	tRNA	NA	NA	NA	NA
AXM29942.1|4091242_4092157_+	lauroyl acyltransferase	NA	NA	NA	NA	NA
AXM29943.1|4092356_4092878_-	N-acetyltransferase	NA	NA	NA	NA	NA
AXM29944.1|4093120_4094254_+	GTP cyclohydrolase II RibA	NA	A0A2H4PQS2	Staphylococcus_phage	44.2	6.1e-28
AXM30695.1|4094363_4094867_+	hypothetical protein	NA	NA	NA	NA	NA
AXM29945.1|4094863_4096330_+	hypothetical protein	NA	NA	NA	NA	NA
AXM29946.1|4096495_4097554_-	CDP-glycerol glycerophosphotransferase	NA	NA	NA	NA	NA
AXM29947.1|4097554_4098379_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
AXM29948.1|4098576_4099854_-	O-antigen ligase family protein	NA	NA	NA	NA	NA
AXM29949.1|4100018_4101740_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
AXM29950.1|4101790_4103104_-	16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	NA	NA	NA	NA	NA
AXM29951.1|4103103_4104027_-|tRNA	methionyl-tRNA formyltransferase	tRNA	NA	NA	NA	NA
AXM29952.1|4104420_4104933_-	peptide deformylase	NA	E3SLL2	Synechococcus_phage	43.0	2.6e-18
AXM29953.1|4105065_4106202_+	LysM peptidoglycan-binding domain-containing protein	NA	G3MBQ1	Bacillus_virus	57.1	1.7e-09
AXM29954.1|4106273_4107416_+	DNA-protecting protein DprA	NA	NA	NA	NA	NA
AXM29955.1|4107458_4107932_+	DUF494 domain-containing protein	NA	NA	NA	NA	NA
AXM29956.1|4107972_4108695_+	DUF4339 domain-containing protein	NA	NA	NA	NA	NA
AXM29957.1|4108736_4110011_+	RDD family protein	NA	NA	NA	NA	NA
4109672:4109688	attR	CAAGCTGGTGCGCGCCG	NA	NA	NA	NA
AXM29958.1|4110193_4112686_+	DNA topoisomerase I	NA	A0A0G2YA05	Acanthamoeba_polyphaga_mimivirus	35.1	1.9e-114
AXM29959.1|4112696_4113260_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
AXM29960.1|4113483_4114257_+	DUF4124 domain-containing protein	NA	NA	NA	NA	NA
AXM29961.1|4114253_4114928_+	DUF4124 domain-containing protein	NA	NA	NA	NA	NA
AXM29962.1|4115089_4115866_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
AXM29963.1|4115972_4116188_+	hypothetical protein	NA	NA	NA	NA	NA
AXM29964.1|4116373_4118275_-	signal peptide peptidase SppA	NA	A0A291AUM2	Sinorhizobium_phage	28.3	8.1e-09
AXM29965.1|4118359_4119736_-	MATE family efflux transporter	NA	NA	NA	NA	NA
AXM29966.1|4120254_4121199_+	hypothetical protein	NA	NA	NA	NA	NA
AXM29967.1|4121529_4122132_-	DUF3106 domain-containing protein	NA	NA	NA	NA	NA
AXM29968.1|4122115_4123141_-	hypothetical protein	NA	NA	NA	NA	NA
AXM29969.1|4123609_4125832_+	primosomal protein N'	NA	NA	NA	NA	NA
AXM29970.1|4126234_4126750_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AXM29971.1|4127279_4128599_+|transposase	IS701 family transposase	transposase	NA	NA	NA	NA
>prophage 32
CP031458	Xanthomonas oryzae pv. oryzae strain JL28 chromosome, complete genome	4697691	4286080	4342944	4697691	tRNA,transposase	Tupanvirus(16.67%)	43	NA	NA
AXM30086.1|4286080_4287085_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
AXM30712.1|4287548_4287743_-	hypothetical protein	NA	NA	NA	NA	NA
AXM30087.1|4288493_4289069_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
AXM30088.1|4289127_4290651_-	catalase	NA	A0A2K9L0T1	Tupanvirus	48.0	2.2e-97
AXM30713.1|4291341_4291812_-	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AXM30089.1|4291773_4291962_+	hypothetical protein	NA	NA	NA	NA	NA
AXM30090.1|4291974_4292940_-|transposase	IS1595 family transposase	transposase	NA	NA	NA	NA
AXM30091.1|4293022_4293289_-	hypothetical protein	NA	NA	NA	NA	NA
AXM30092.1|4293562_4295695_-	ATP-dependent DNA helicase DinG	NA	NA	NA	NA	NA
AXM30714.1|4296156_4296543_-	hypothetical protein	NA	NA	NA	NA	NA
AXM30093.1|4296544_4297396_-	shikimate dehydrogenase	NA	NA	NA	NA	NA
AXM30094.1|4297448_4298330_+	TolB-like protein	NA	NA	NA	NA	NA
AXM30095.1|4298986_4301521_-	iron-uptake factor	NA	NA	NA	NA	NA
AXM30096.1|4301754_4302507_+	DNA/RNA non-specific endonuclease	NA	H6X497	Enterobacteria_phage	33.9	5.6e-22
AXM30097.1|4302634_4303549_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXM30098.1|4304821_4305814_-	porphobilinogen synthase	NA	NA	NA	NA	NA
AXM30099.1|4306478_4306937_+	hypothetical protein	NA	NA	NA	NA	NA
AXM30100.1|4307036_4308827_-	DUF885 domain-containing protein	NA	NA	NA	NA	NA
AXM30101.1|4309035_4311273_-	S9 family peptidase	NA	NA	NA	NA	NA
AXM30102.1|4311697_4312387_-	glutathione S-transferase	NA	NA	NA	NA	NA
AXM30103.1|4312655_4313419_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
AXM30715.1|4313592_4316607_+	TonB-dependent receptor	NA	NA	NA	NA	NA
AXM30104.1|4316790_4317492_+	peptidase	NA	NA	NA	NA	NA
AXM30105.1|4317481_4318495_+	cupin-like domain-containing protein	NA	NA	NA	NA	NA
AXM30106.1|4318505_4320071_+	tryptophan 7-halogenase	NA	E3SL43	Synechococcus_phage	28.8	7.3e-40
AXM30107.1|4320210_4321233_+	energy transducer TonB	NA	NA	NA	NA	NA
AXM30108.1|4321642_4322836_-	ABC transporter permease	NA	NA	NA	NA	NA
AXM30109.1|4322832_4323579_-	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.3	5.2e-20
AXM30110.1|4323610_4325212_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AXM30111.1|4325272_4325473_-	transcriptional regulator	NA	NA	NA	NA	NA
AXM30716.1|4325469_4326057_-	hypothetical protein	NA	NA	NA	NA	NA
AXM30112.1|4326542_4326815_-	metal/formaldehyde-sensitive transcriptional repressor	NA	NA	NA	NA	NA
AXM30113.1|4326880_4327882_+	cation transporter	NA	NA	NA	NA	NA
AXM30114.1|4327966_4328728_-	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
AXM30115.1|4328830_4329826_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	31.0	9.4e-25
AXM30717.1|4329843_4330635_+	ABC transporter permease	NA	NA	NA	NA	NA
AXM30116.1|4330637_4331387_+	DUF3800 domain-containing protein	NA	A0A1W6JTE9	Pseudomonas_phage	44.4	5.6e-54
AXM30718.1|4331505_4332444_+	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
AXM30117.1|4332443_4332626_+	hypothetical protein	NA	NA	NA	NA	NA
AXM30118.1|4334237_4335344_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
AXM30119.1|4336404_4337370_+|transposase	IS1595-like element ISXo5 family transposase	transposase	NA	NA	NA	NA
AXM30120.1|4341323_4342086_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
AXM30121.1|4342146_4342944_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
>prophage 33
CP031458	Xanthomonas oryzae pv. oryzae strain JL28 chromosome, complete genome	4697691	4351790	4419967	4697691	tRNA,transposase	Ralstonia_phage(22.22%)	44	NA	NA
AXM30129.1|4351790_4352222_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
AXM30130.1|4352224_4352854_+	acyltransferase	NA	NA	NA	NA	NA
AXM30131.1|4353491_4355660_+	peptidyl-dipeptidase Dcp	NA	NA	NA	NA	NA
AXM30132.1|4355786_4357949_-	type III secretion system effector protein	NA	NA	NA	NA	NA
AXM30133.1|4358775_4359741_-|transposase	IS1595-like element ISXo5 family transposase	transposase	NA	NA	NA	NA
AXM30134.1|4359933_4361415_-|transposase	IS5 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	66.0	2.7e-100
AXM30719.1|4361851_4362217_-	L-rhamnose mutarotase	NA	NA	NA	NA	NA
AXM30135.1|4362213_4363515_-	L-fucose:H+ symporter permease	NA	NA	NA	NA	NA
AXM30136.1|4363695_4364472_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AXM30137.1|4364948_4365533_+	hypothetical protein	NA	NA	NA	NA	NA
AXM30720.1|4365725_4369175_-	hybrid sensor histidine kinase/response regulator	NA	NA	NA	NA	NA
AXM30138.1|4369315_4369516_-	hypothetical protein	NA	NA	NA	NA	NA
AXM30139.1|4369922_4372565_+	hypothetical protein	NA	NA	NA	NA	NA
AXM30721.1|4372668_4375068_-	NdvB protein	NA	NA	NA	NA	NA
AXM30140.1|4375070_4376453_-	MFS transporter	NA	NA	NA	NA	NA
AXM30141.1|4376610_4377195_+	gluconokinase	NA	NA	NA	NA	NA
AXM30142.1|4377247_4378011_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
AXM30143.1|4378889_4380644_+	polyvinylalcohol dehydrogenase	NA	A0A0M4JT37	Mollivirus	35.6	7.3e-81
AXM30144.1|4380951_4381257_-	hypothetical protein	NA	NA	NA	NA	NA
AXM30722.1|4381159_4381600_-	3-dehydroquinate dehydratase	NA	NA	NA	NA	NA
AXM30145.1|4381619_4382048_-	hypothetical protein	NA	NA	NA	NA	NA
AXM30146.1|4383445_4384681_+|transposase	ISL3 family transposase	transposase	NA	NA	NA	NA
AXM30147.1|4384842_4385674_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
AXM30148.1|4385733_4386948_-|transposase	IS4 family transposase	transposase	A0A0F7LAS3	uncultured_marine_virus	33.4	4.1e-54
AXM30149.1|4387079_4387877_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
AXM30150.1|4388455_4389424_+|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	60.3	8.7e-100
AXM30151.1|4389911_4390868_-|transposase	IS30 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	34.4	2.9e-39
AXM30152.1|4391712_4392678_+|transposase	IS1595-like element ISXo5 family transposase	transposase	NA	NA	NA	NA
AXM30153.1|4392695_4393253_+	N-acetyltransferase	NA	NA	NA	NA	NA
AXM30154.1|4393271_4393559_-	hypothetical protein	NA	NA	NA	NA	NA
AXM30155.1|4393943_4394738_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.8	1.7e-08
AXM30156.1|4394737_4395487_+	ABC transporter permease	NA	NA	NA	NA	NA
AXM30157.1|4395498_4396050_+	outer membrane lipid asymmetry maintenance protein MlaD	NA	NA	NA	NA	NA
AXM30158.1|4396046_4396709_+	organic solvent ABC transporter	NA	NA	NA	NA	NA
AXM30159.1|4396698_4396989_+	STAS domain-containing protein	NA	NA	NA	NA	NA
AXM30160.1|4396999_4398058_+	VacJ family lipoprotein	NA	NA	NA	NA	NA
AXM30161.1|4399856_4400620_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
AXM30162.1|4400724_4401687_+|transposase	IS1595-like element ISXo2 family transposase	transposase	NA	NA	NA	NA
AXM30163.1|4402033_4402849_-	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA	A0A127AWE5	Bacillus_phage	27.3	6.3e-19
AXM30164.1|4412167_4414072_-	GAF domain-containing protein	NA	Q6XLU9	Feldmannia_irregularis_virus	27.7	3.9e-19
AXM30165.1|4414068_4414671_-	biliverdin-producing heme oxygenase	NA	NA	NA	NA	NA
AXM30166.1|4414730_4416035_-	tetracycline resistance MFS efflux pump	NA	NA	NA	NA	NA
AXM30167.1|4416582_4418745_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
AXM30168.1|4418998_4419967_-|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	60.3	8.7e-100
>prophage 34
CP031458	Xanthomonas oryzae pv. oryzae strain JL28 chromosome, complete genome	4697691	4475777	4563057	4697691	protease,tRNA,transposase	Ralstonia_phage(18.18%)	49	NA	NA
AXM30206.1|4475777_4477682_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
AXM30207.1|4478215_4479904_-	DUF2875 domain-containing protein	NA	NA	NA	NA	NA
AXM30208.1|4479900_4482102_-	DUF3274 domain-containing protein	NA	A0A077K801	Ralstonia_phage	29.7	5.9e-19
AXM30209.1|4482163_4482427_-	PAAR domain-containing protein	NA	A4JWV5	Burkholderia_virus	43.4	4.4e-06
AXM30210.1|4482423_4484115_-	DUF2875 domain-containing protein	NA	NA	NA	NA	NA
AXM30725.1|4484111_4486265_-	DUF3274 domain-containing protein	NA	A0A077K801	Ralstonia_phage	28.5	2.0e-27
AXM30211.1|4486332_4489056_-	type VI secretion system tip protein VgrG	NA	A0A2H4JCD4	uncultured_Caudovirales_phage	30.0	5.3e-70
AXM30212.1|4489460_4490837_-|transposase	IS5-like element ISXoo4 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	55.1	7.8e-78
AXM30213.1|4491402_4493289_-	arginine decarboxylase	NA	NA	NA	NA	NA
AXM30214.1|4493526_4494384_+	polyamine aminopropyltransferase	NA	A0A1C9C533	Heterosigma_akashiwo_virus	31.5	2.9e-14
AXM30215.1|4494800_4495412_-	hypothetical protein	NA	NA	NA	NA	NA
AXM30216.1|4495604_4496417_-	hypothetical protein	NA	NA	NA	NA	NA
AXM30217.1|4497336_4499322_-	beta-N-acetylglucosaminidase	NA	NA	NA	NA	NA
AXM30726.1|4499934_4500273_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
AXM30218.1|4500462_4500741_+	hypothetical protein	NA	NA	NA	NA	NA
AXM30219.1|4500757_4502278_+|protease	ATP-dependent protease	protease	NA	NA	NA	NA
AXM30220.1|4502434_4503754_-|transposase	IS701 family transposase	transposase	NA	NA	NA	NA
AXM30221.1|4510898_4514015_+	DUF3416 domain-containing protein	NA	NA	NA	NA	NA
AXM30222.1|4514011_4517362_+	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
AXM30223.1|4517373_4519557_+	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
AXM30224.1|4520379_4520907_+	xylosidase	NA	NA	NA	NA	NA
AXM30225.1|4520882_4520978_+	xylosidase	NA	NA	NA	NA	NA
AXM30727.1|4520959_4521157_-	hypothetical protein	NA	NA	NA	NA	NA
AXM30226.1|4521112_4522180_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
AXM30227.1|4523581_4524964_+|transposase	IS5 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	53.7	4.7e-75
AXM30728.1|4525202_4526000_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
AXM30228.1|4528561_4530043_-	glutamate synthase small subunit	NA	NA	NA	NA	NA
AXM30229.1|4530237_4534710_-	glutamate synthase large subunit	NA	NA	NA	NA	NA
AXM30230.1|4534911_4535292_-	Elastase inhibitor AFLEI Flags: Precursor	NA	NA	NA	NA	NA
AXM30231.1|4535348_4536602_+	DNA topoisomerase IB	NA	A0A0U2TSJ7	Niemeyer_virus	35.2	1.9e-38
AXM30232.1|4536670_4536916_+	hypothetical protein	NA	NA	NA	NA	NA
AXM30233.1|4536903_4537209_-	hypothetical protein	NA	NA	NA	NA	NA
AXM30729.1|4538359_4539499_+	saccharopine dehydrogenase	NA	NA	NA	NA	NA
AXM30234.1|4539812_4540598_-	DUF1868 domain-containing protein	NA	NA	NA	NA	NA
AXM30235.1|4540608_4543197_-	TonB-dependent receptor	NA	NA	NA	NA	NA
AXM30236.1|4543369_4544527_+	ROK family protein	NA	NA	NA	NA	NA
AXM30237.1|4544717_4546862_+	avirulence protein	NA	NA	NA	NA	NA
AXM30238.1|4547350_4549177_-	exonuclease	NA	NA	NA	NA	NA
AXM30730.1|4549173_4551582_-	DEAD/DEAH box helicase	NA	A0A1B1IUF6	uncultured_Mediterranean_phage	36.0	1.5e-07
AXM30239.1|4551846_4552509_+	hemolysin III family protein	NA	NA	NA	NA	NA
AXM30240.1|4552575_4552806_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA	NA
AXM30241.1|4552829_4553231_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
AXM30242.1|4553683_4553935_+	type I toxin-antitoxin system SymE family toxin	NA	NA	NA	NA	NA
AXM30243.1|4555810_4557121_-	ABC transporter permease	NA	NA	NA	NA	NA
AXM30244.1|4557133_4558291_-	ABC transporter permease	NA	NA	NA	NA	NA
AXM30245.1|4558303_4558993_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	1.3e-36
AXM30246.1|4560216_4561464_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AXM30247.1|4561637_4562126_+	hypothetical protein	NA	NA	NA	NA	NA
AXM30248.1|4562100_4563057_-|transposase	IS30 family transposase IS1112a	transposase	Q9MBM9	Staphylococcus_prophage	35.2	2.1e-42
>prophage 35
CP031458	Xanthomonas oryzae pv. oryzae strain JL28 chromosome, complete genome	4697691	4567713	4619632	4697691	holin,transposase	Ralstonia_phage(66.67%)	47	NA	NA
AXM30254.1|4567713_4568661_-|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	35.7	6.6e-44
AXM30255.1|4568801_4569860_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
AXM30256.1|4569998_4570280_+	hypothetical protein	NA	NA	NA	NA	NA
AXM30257.1|4570320_4570593_+	hypothetical protein	NA	NA	NA	NA	NA
AXM30258.1|4570684_4570870_+	hypothetical protein	NA	NA	NA	NA	NA
AXM30259.1|4570983_4571934_-|transposase	IS5 family transposase	transposase	A0A077K814	Ralstonia_phage	61.9	3.0e-97
AXM30260.1|4572640_4573528_+	TIGR01777 family protein	NA	NA	NA	NA	NA
AXM30261.1|4573833_4574151_+	ATP-binding protein	NA	NA	NA	NA	NA
AXM30262.1|4574610_4575462_-	histidine biosynthesis protein HisIE	NA	NA	NA	NA	NA
AXM30263.1|4575703_4577140_+	Do family serine endopeptidase	NA	W5SAB9	Pithovirus	30.7	1.5e-10
AXM30264.1|4577256_4577619_+	hypothetical protein	NA	NA	NA	NA	NA
AXM30265.1|4577622_4578108_+|holin	phage holin family protein	holin	NA	NA	NA	NA
AXM30266.1|4578104_4578488_+	hypothetical protein	NA	NA	NA	NA	NA
AXM30731.1|4579045_4580674_-	type III secretion system effector XopAE	NA	NA	NA	NA	NA
AXM30267.1|4581549_4583958_-	serine kinase	NA	NA	NA	NA	NA
AXM30268.1|4584679_4585663_+|transposase	IS5 family transposase	transposase	A0A077K814	Ralstonia_phage	61.2	7.5e-99
AXM30269.1|4585851_4587171_+|transposase	IS701 family transposase	transposase	NA	NA	NA	NA
AXM30270.1|4587383_4588352_-|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	60.0	8.7e-100
AXM30271.1|4590052_4590499_+	hypothetical protein	NA	NA	NA	NA	NA
AXM30272.1|4590495_4592481_+	hypothetical protein	NA	NA	NA	NA	NA
AXM30273.1|4592895_4593366_-	4-hydroxyphenylacetate 3-monooxygenase	NA	NA	NA	NA	NA
AXM30274.1|4593420_4593651_-	serine kinase	NA	NA	NA	NA	NA
AXM30275.1|4593782_4594025_-	serine kinase	NA	NA	NA	NA	NA
AXM30276.1|4594034_4594973_-	serine kinase	NA	NA	NA	NA	NA
AXM30277.1|4594969_4595797_-	4-hydroxyphenylacetate catabolism regulator HpaA	NA	NA	NA	NA	NA
AXM30278.1|4595793_4596054_-	EscS/YscS/HrcS family type III secretion system export apparatus protein	NA	NA	NA	NA	NA
AXM30279.1|4596058_4596703_-	EscR/YscR/HrcR family type III secretion system export apparatus protein	NA	NA	NA	NA	NA
AXM30280.1|4596689_4597643_-	YscQ/HrcQ family type III secretion apparatus protein	NA	NA	NA	NA	NA
AXM30281.1|4597735_4598377_-	type III secretion protein HpaP	NA	NA	NA	NA	NA
AXM30282.1|4598376_4600299_-	EscV/YscV/HrcV family type III secretion system export apparatus protein	NA	NA	NA	NA	NA
AXM30283.1|4600307_4601387_-	EscU/YscU/HrcU family type III secretion system export apparatus switch protein	NA	NA	NA	NA	NA
AXM30284.1|4601601_4602057_+	HrpB1 family type III secretion system apparatus protein	NA	NA	NA	NA	NA
AXM30285.1|4602090_4602483_+	type III secretion protein HrpB2	NA	NA	NA	NA	NA
AXM30286.1|4602484_4603246_+	EscJ/YscJ/HrcJ family type III secretion inner membrane ring protein	NA	NA	NA	NA	NA
AXM30287.1|4603253_4603883_+	type III secretion protein HrpB4	NA	NA	NA	NA	NA
AXM30288.1|4603867_4604569_+	HrpE/YscL family type III secretion apparatus protein	NA	NA	NA	NA	NA
AXM30289.1|4604558_4605887_+	EscN/YscN/HrcN family type III secretion system ATPase	NA	NA	NA	NA	NA
AXM30290.1|4605879_4606389_+	type III secretion protein HrpB7	NA	NA	NA	NA	NA
AXM30291.1|4606385_4607216_+	EscT/YscT/HrcT family type III secretion system export apparatus protein	NA	NA	NA	NA	NA
AXM30292.1|4607298_4609116_+	EscC/YscC/HrcC family type III secretion system outer membrane ring protein	NA	NA	NA	NA	NA
AXM30293.1|4609854_4610274_-	hypothetical protein	NA	NA	NA	NA	NA
AXM30294.1|4610649_4611213_+	lytic transglycosylase	NA	A0A0K2QQJ4	Ralstonia_phage	38.5	4.4e-11
AXM30295.1|4611676_4613230_-	hypothetical protein	NA	NA	NA	NA	NA
AXM30296.1|4615446_4615788_-	hypothetical protein	NA	NA	NA	NA	NA
AXM30732.1|4615972_4618531_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
AXM30297.1|4618549_4618810_-	hypothetical protein	NA	NA	NA	NA	NA
AXM30298.1|4618869_4619632_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
