assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003368325.1_ASM336832v1	CP031466	Paraburkholderia caffeinilytica strain CF1 chromosome 1, complete sequence	1	318210-318322	1	CRISPRCasFinder	no		csa3,cas3,DinG,PD-DExK	Orphan	GTTTCGATTATTCGGCTCTCAAAACGATTACAAAAC	36	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DinG,PD-DExK,DEDDh,WYL	NA,NA|285aa|down_8|CP031466.1_331046_331901_-,NA|160aa|down_9|CP031466.1_331913_332393_-	NA|484aa|up_9|CP031466.1_302400_303852_-	TIGR01845, Outer_membrane_protein_OprM, efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family	NA|315aa|up_8|CP031466.1_305003_305948_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|310aa|up_7|CP031466.1_305944_306874_-	PRK03598, PRK03598, putative efflux pump membrane fusion protein; Provisional	NA|234aa|up_6|CP031466.1_306900_307602_-	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|278aa|up_5|CP031466.1_307884_308718_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|411aa|up_4|CP031466.1_309787_311020_-	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold	NA|258aa|up_3|CP031466.1_311403_312177_+	PRK07074, PRK07074, SDR family oxidoreductase	NA|361aa|up_2|CP031466.1_312283_313366_+	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA|75aa|up_1|CP031466.1_314596_314821_+	cd04685, Nudix_Hydrolase_26, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|513aa|up_0|CP031466.1_316617_318156_-	COG3177, COG3177, Fic family protein [Function unknown]	NA|280aa|down_0|CP031466.1_318367_319207_-	COG1414, IclR, Transcriptional regulator [Transcription]	NA|320aa|down_1|CP031466.1_320372_321332_+	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|570aa|down_2|CP031466.1_321390_323100_+	PRK08132, PRK08132, FAD-dependent oxidoreductase; Provisional	NA|79aa|down_3|CP031466.1_323213_323450_+	pfam10932, DUF2783, Protein of unknown function (DUF2783)	NA|443aa|down_4|CP031466.1_323637_324966_+	TIGR00893, Probable_glucarate_transporter, D-galactonate transporter	NA|233aa|down_5|CP031466.1_325049_325748_+	COG2091, Sfp, Phosphopantetheinyl transferase [Coenzyme metabolism]	NA|295aa|down_6|CP031466.1_327094_327979_+	cd00408, DHDPS-like, Dihydrodipicolinate synthase family	NA|449aa|down_7|CP031466.1_329526_330873_+	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|285aa|down_8|CP031466.1_331046_331901_-	NA	NA|160aa|down_9|CP031466.1_331913_332393_-	NA
GCA_003368325.1_ASM336832v1	CP031466	Paraburkholderia caffeinilytica strain CF1 chromosome 1, complete sequence	2	739687-739790	2	CRISPRCasFinder	no		csa3,cas3,DinG,PD-DExK	Orphan	GATGAGTCAGGCGGCATGAGCCGGG	25	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DinG,PD-DExK,DEDDh,WYL	NA|338aa|up_7|CP031466.1_727866_728880_+,NA|107aa|up_1|CP031466.1_737854_738175_-,NA|368aa|down_3|CP031466.1_745667_746771_-,NA|115aa|down_4|CP031466.1_747035_747380_-,NA|130aa|down_5|CP031466.1_747526_747916_-,NA|166aa|down_7|CP031466.1_759899_760397_+	NA|494aa|up_9|CP031466.1_723341_724823_+	cd10322, SLC5sbd, Solute carrier 5 family, sodium/glucose transporters and related proteins; solute-binding domain	NA|330aa|up_8|CP031466.1_725525_726515_-	PRK09041, motB, motility protein MotB	NA|338aa|up_7|CP031466.1_727866_728880_+	NA	NA|471aa|up_6|CP031466.1_728954_730367_+	pfam10009, DUF2252, Uncharacterized protein conserved in bacteria (DUF2252)	NA|286aa|up_5|CP031466.1_730428_731286_-	cd10917, CE4_NodB_like_6s_7s, Catalytic NodB homology domain of rhizobial NodB-like proteins	NA|290aa|up_4|CP031466.1_732764_733634_+	PRK05333, PRK05333, NAD-dependent protein deacetylase	NA|470aa|up_3|CP031466.1_734779_736189_+	PRK09287, PRK09287, NADP-dependent phosphogluconate dehydrogenase	NA|106aa|up_2|CP031466.1_736453_736771_+	pfam13663, DUF4148, Domain of unknown function (DUF4148)	NA|107aa|up_1|CP031466.1_737854_738175_-	NA	NA|115aa|up_0|CP031466.1_738423_738768_+	COG0662, {ManC}, Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]	NA|336aa|down_0|CP031466.1_739976_740984_+	PRK10534, PRK10534, L-threonine aldolase; Provisional	NA|482aa|down_1|CP031466.1_741031_742477_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|828aa|down_2|CP031466.1_743095_745579_+	cd04300, GT35_Glycogen_Phosphorylase, glycogen phosphorylase and similar proteins	NA|368aa|down_3|CP031466.1_745667_746771_-	NA	NA|115aa|down_4|CP031466.1_747035_747380_-	NA	NA|130aa|down_5|CP031466.1_747526_747916_-	NA	NA|522aa|down_6|CP031466.1_748348_749914_+	COG2132, SufI, Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]	NA|166aa|down_7|CP031466.1_759899_760397_+	NA	NA|280aa|down_8|CP031466.1_760437_761277_+	cd16329, LolA_like, proteins similar to periplasmic molecular chaperone LolA, the outer membrane lipoprotein receptor LolB and the periplasmic protein RseB	NA|279aa|down_9|CP031466.1_761303_762140_+	cd16329, LolA_like, proteins similar to periplasmic molecular chaperone LolA, the outer membrane lipoprotein receptor LolB and the periplasmic protein RseB
GCA_003368325.1_ASM336832v1	CP031466	Paraburkholderia caffeinilytica strain CF1 chromosome 1, complete sequence	3	922128-922198	3	CRISPRCasFinder	no		csa3,cas3,DinG,PD-DExK	Orphan	GGCCAATACGGTTCAGACATTTC	23	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DinG,PD-DExK,DEDDh,WYL	NA|129aa|up_4|CP031466.1_914763_915150_+,NA|91aa|up_2|CP031466.1_916387_916660_+,NA|78aa|down_8|CP031466.1_928107_928341_-,NA|69aa|down_9|CP031466.1_928571_928778_-	NA|395aa|up_9|CP031466.1_907236_908421_+	cd01163, DszC, Dibenzothiophene (DBT) desulfurization enzyme C	NA|107aa|up_8|CP031466.1_910543_910864_-	PRK02909, PRK02909, flagellar transcriptional regulator FlhD	NA|293aa|up_7|CP031466.1_912357_913236_-	pfam17765, MLTR_LBD, MmyB-like transcription regulator ligand binding domain	NA|101aa|up_6|CP031466.1_913402_913705_-	TIGR02684, conserved_hypothetical_protein, probable addiction module antidote protein	NA|123aa|up_5|CP031466.1_914365_914734_+	pfam12680, SnoaL_2, SnoaL-like domain	NA|129aa|up_4|CP031466.1_914763_915150_+	NA	NA|144aa|up_3|CP031466.1_915889_916321_+	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|91aa|up_2|CP031466.1_916387_916660_+	NA	NA|564aa|up_1|CP031466.1_916683_918375_-	cd17321, MFS_MMR_MDR_like, Methylenomycin A resistance protein (also called MMR peptide) and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|167aa|up_0|CP031466.1_920327_920828_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|362aa|down_0|CP031466.1_922475_923561_-	cd00800, INT_Lambda_C, C-terminal catalytic domain of Lambda integrase, a tyrosine-based site-specific recombinase	NA|66aa|down_1|CP031466.1_923563_923761_-	pfam07825, Exc, Excisionase-like protein	NA|254aa|down_2|CP031466.1_923845_924607_-	TIGR03736, PRTRC_ThiF, PRTRC system ThiF family protein	NA|264aa|down_3|CP031466.1_924603_925395_-	TIGR03735, PRTRC_A, PRTRC system protein A	NA|238aa|down_4|CP031466.1_925399_926113_-	TIGR03737, PRTRC_B, PRTRC system protein B	NA|349aa|down_5|CP031466.1_926109_927156_-	TIGR03742, PRTRC_F, PRTRC system protein F	NA|130aa|down_6|CP031466.1_927152_927542_-	TIGR03738, PRTRC_C, PRTRC system protein C	NA|177aa|down_7|CP031466.1_927552_928083_-	TIGR03741, PRTRC_E, PRTRC system protein E	NA|78aa|down_8|CP031466.1_928107_928341_-	NA	NA|69aa|down_9|CP031466.1_928571_928778_-	NA
GCA_003368325.1_ASM336832v1	CP031466	Paraburkholderia caffeinilytica strain CF1 chromosome 1, complete sequence	5	1785797-1785906	5	CRISPRCasFinder	no		csa3,cas3,DinG,PD-DExK	Orphan	CAAGGAAAGCCCAACGCCGTAGGCACA	27	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DinG,PD-DExK,DEDDh,WYL	NA|211aa|up_4|CP031466.1_1780934_1781567_+,NA	NA|502aa|up_9|CP031466.1_1776475_1777981_+	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|114aa|up_8|CP031466.1_1778082_1778424_+	COG2824, PhnA, Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism]	NA|69aa|up_7|CP031466.1_1778477_1778684_+	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|467aa|up_6|CP031466.1_1778680_1780081_-	TIGR01386, Probable_sensor_protein_PcoS, heavy metal sensor kinase	NA|224aa|up_5|CP031466.1_1780077_1780749_-	TIGR01387, Transcriptional_regulatory_protein_PcoR, heavy metal response regulator	NA|211aa|up_4|CP031466.1_1780934_1781567_+	NA	NA|211aa|up_3|CP031466.1_1781677_1782310_+	COG4117, COG4117, Thiosulfate reductase cytochrome B subunit (membrane anchoring protein) [Energy production and conversion]	NA|258aa|up_2|CP031466.1_1782306_1783080_+	cd02108, bact_SO_family_Moco, bacterial subgroup of the sulfite oxidase (SO) family of molybdopterin binding domains	NA|359aa|up_1|CP031466.1_1783100_1784177_-	pfam06719, AraC_N, AraC-type transcriptional regulator N-terminus	NA|351aa|up_0|CP031466.1_1784497_1785550_+	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|314aa|down_0|CP031466.1_1788585_1789527_-	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|1304aa|down_1|CP031466.1_1790766_1794678_+	COG3523, IcmF, Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and    vesicular transport]	NA|331aa|down_2|CP031466.1_1794674_1795667_+	COG3913, SciT, Uncharacterized protein conserved in bacteria [Function unknown]	NA|314aa|down_3|CP031466.1_1795686_1796628_+	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA	NA|370aa|down_4|CP031466.1_1796712_1797822_-	TIGR03363, VI_chp_8, type VI secretion-associated protein, ImpA family	NA|892aa|down_5|CP031466.1_1797887_1800563_-	TIGR03345, VI_ClpV1, type VI secretion ATPase, ClpV1 family	NA|365aa|down_6|CP031466.1_1800598_1801693_-	pfam06996, T6SS_TssG, Type VI secretion, TssG	NA|613aa|down_7|CP031466.1_1801656_1803495_-	TIGR03359, VI_chp_6, type VI secretion protein, VC_A0110 family	NA|160aa|down_8|CP031466.1_1803634_1804114_-	COG3518, COG3518, Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and    vesicular transport]	NA|168aa|down_9|CP031466.1_1804197_1804701_-	pfam05638, T6SS_HCP, Type VI secretion system effector, Hcp
GCA_003368325.1_ASM336832v1	CP031466	Paraburkholderia caffeinilytica strain CF1 chromosome 1, complete sequence	8	2964140-2964229	7	CRISPRCasFinder	no		csa3,cas3,DinG,PD-DExK	Orphan	GATGGTGCCGCTGTTGGTCAGCA	23	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DinG,PD-DExK,DEDDh,WYL	NA,NA	NA|250aa|up_9|CP031466.1_2932747_2933497_-	cd01011, nicotinamidase, Nicotinamidase/pyrazinamidase (PZase)	NA|610aa|up_8|CP031466.1_2934901_2936731_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|304aa|up_7|CP031466.1_2937473_2938385_-	pfam01738, DLH, Dienelactone hydrolase family	NA|387aa|up_6|CP031466.1_2938381_2939542_-	COG0859, RfaF, ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]	NA|695aa|up_5|CP031466.1_2939538_2941623_-	pfam13469, Sulfotransfer_3, Sulfotransferase family	NA|1750aa|up_4|CP031466.1_2941765_2947015_-	COG4625, COG4625, Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain [Function unknown]	NA|257aa|up_3|CP031466.1_2949272_2950043_-	cd07735, class_II_PDE_MBL-fold, class II cyclic nucleotide phosphodiesterases Saccharomyces cerevisiae PDE1, Dictyostelium discoideum PDE1 and PDE7, and related proteins; MBL-fold metallo-hydrolase domain	NA|738aa|up_2|CP031466.1_2950057_2952271_-	smart01080, CHASE2, CHASE2 is an extracellular sensory domain, which is present in various classes of transmembrane receptors that are parts of signal transduction pathways in bacteria	NA|739aa|up_1|CP031466.1_2952279_2954496_-	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]	NA|589aa|up_0|CP031466.1_2955172_2956939_-	COG2831, FhaC, Hemolysin activation/secretion protein [Intracellular trafficking and secretion]	NA|213aa|down_0|CP031466.1_2965528_2966167_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|249aa|down_1|CP031466.1_2966618_2967365_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|367aa|down_2|CP031466.1_2969955_2971056_-	COG2008, GLY1, Threonine aldolase [Amino acid transport and metabolism]	NA|661aa|down_3|CP031466.1_2972810_2974793_-	pfam02449, Glyco_hydro_42, Beta-galactosidase	NA|284aa|down_4|CP031466.1_2974863_2975715_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|292aa|down_5|CP031466.1_2975729_2976605_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|410aa|down_6|CP031466.1_2976697_2977927_-	cd14749, PBP2_XBP1_like, The periplasmic-binding component of ABC transport systems specific for xylo-oligosaccharides; possesses type 2 periplasmic binding fold	NA|381aa|down_7|CP031466.1_2977947_2979090_-	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA|339aa|down_8|CP031466.1_2979352_2980369_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|182aa|down_9|CP031466.1_2980408_2980954_-	pfam10604, Polyketide_cyc2, Polyketide cyclase / dehydrase and lipid transport
GCA_003368325.1_ASM336832v1	CP031466	Paraburkholderia caffeinilytica strain CF1 chromosome 1, complete sequence	9	2964308-2964610	8	CRISPRCasFinder	no		csa3,cas3,DinG,PD-DExK	Orphan	GATGGTGCCGCTGTTGGTCAGCA	23	0	0	NA	NA	NA	4	4	Orphan	csa3,cas3,DinG,PD-DExK,DEDDh,WYL	NA,NA	NA|250aa|up_9|CP031466.1_2932747_2933497_-	cd01011, nicotinamidase, Nicotinamidase/pyrazinamidase (PZase)	NA|610aa|up_8|CP031466.1_2934901_2936731_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|304aa|up_7|CP031466.1_2937473_2938385_-	pfam01738, DLH, Dienelactone hydrolase family	NA|387aa|up_6|CP031466.1_2938381_2939542_-	COG0859, RfaF, ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]	NA|695aa|up_5|CP031466.1_2939538_2941623_-	pfam13469, Sulfotransfer_3, Sulfotransferase family	NA|1750aa|up_4|CP031466.1_2941765_2947015_-	COG4625, COG4625, Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain [Function unknown]	NA|257aa|up_3|CP031466.1_2949272_2950043_-	cd07735, class_II_PDE_MBL-fold, class II cyclic nucleotide phosphodiesterases Saccharomyces cerevisiae PDE1, Dictyostelium discoideum PDE1 and PDE7, and related proteins; MBL-fold metallo-hydrolase domain	NA|738aa|up_2|CP031466.1_2950057_2952271_-	smart01080, CHASE2, CHASE2 is an extracellular sensory domain, which is present in various classes of transmembrane receptors that are parts of signal transduction pathways in bacteria	NA|739aa|up_1|CP031466.1_2952279_2954496_-	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]	NA|589aa|up_0|CP031466.1_2955172_2956939_-	COG2831, FhaC, Hemolysin activation/secretion protein [Intracellular trafficking and secretion]	NA|213aa|down_0|CP031466.1_2965528_2966167_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|249aa|down_1|CP031466.1_2966618_2967365_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|367aa|down_2|CP031466.1_2969955_2971056_-	COG2008, GLY1, Threonine aldolase [Amino acid transport and metabolism]	NA|661aa|down_3|CP031466.1_2972810_2974793_-	pfam02449, Glyco_hydro_42, Beta-galactosidase	NA|284aa|down_4|CP031466.1_2974863_2975715_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|292aa|down_5|CP031466.1_2975729_2976605_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|410aa|down_6|CP031466.1_2976697_2977927_-	cd14749, PBP2_XBP1_like, The periplasmic-binding component of ABC transport systems specific for xylo-oligosaccharides; possesses type 2 periplasmic binding fold	NA|381aa|down_7|CP031466.1_2977947_2979090_-	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA|339aa|down_8|CP031466.1_2979352_2980369_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|182aa|down_9|CP031466.1_2980408_2980954_-	pfam10604, Polyketide_cyc2, Polyketide cyclase / dehydrase and lipid transport
GCA_003368325.1_ASM336832v1	CP031466	Paraburkholderia caffeinilytica strain CF1 chromosome 1, complete sequence	10	2964722-2964876	9	CRISPRCasFinder	no		csa3,cas3,DinG,PD-DExK	Orphan	GATGGTGCCGCTGTTGGTCAGCA	23	0	0	NA	NA	NA	2	2	Orphan	csa3,cas3,DinG,PD-DExK,DEDDh,WYL	NA,NA	NA|250aa|up_9|CP031466.1_2932747_2933497_-	cd01011, nicotinamidase, Nicotinamidase/pyrazinamidase (PZase)	NA|610aa|up_8|CP031466.1_2934901_2936731_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|304aa|up_7|CP031466.1_2937473_2938385_-	pfam01738, DLH, Dienelactone hydrolase family	NA|387aa|up_6|CP031466.1_2938381_2939542_-	COG0859, RfaF, ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]	NA|695aa|up_5|CP031466.1_2939538_2941623_-	pfam13469, Sulfotransfer_3, Sulfotransferase family	NA|1750aa|up_4|CP031466.1_2941765_2947015_-	COG4625, COG4625, Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain [Function unknown]	NA|257aa|up_3|CP031466.1_2949272_2950043_-	cd07735, class_II_PDE_MBL-fold, class II cyclic nucleotide phosphodiesterases Saccharomyces cerevisiae PDE1, Dictyostelium discoideum PDE1 and PDE7, and related proteins; MBL-fold metallo-hydrolase domain	NA|738aa|up_2|CP031466.1_2950057_2952271_-	smart01080, CHASE2, CHASE2 is an extracellular sensory domain, which is present in various classes of transmembrane receptors that are parts of signal transduction pathways in bacteria	NA|739aa|up_1|CP031466.1_2952279_2954496_-	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]	NA|589aa|up_0|CP031466.1_2955172_2956939_-	COG2831, FhaC, Hemolysin activation/secretion protein [Intracellular trafficking and secretion]	NA|213aa|down_0|CP031466.1_2965528_2966167_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|249aa|down_1|CP031466.1_2966618_2967365_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|367aa|down_2|CP031466.1_2969955_2971056_-	COG2008, GLY1, Threonine aldolase [Amino acid transport and metabolism]	NA|661aa|down_3|CP031466.1_2972810_2974793_-	pfam02449, Glyco_hydro_42, Beta-galactosidase	NA|284aa|down_4|CP031466.1_2974863_2975715_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|292aa|down_5|CP031466.1_2975729_2976605_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|410aa|down_6|CP031466.1_2976697_2977927_-	cd14749, PBP2_XBP1_like, The periplasmic-binding component of ABC transport systems specific for xylo-oligosaccharides; possesses type 2 periplasmic binding fold	NA|381aa|down_7|CP031466.1_2977947_2979090_-	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA|339aa|down_8|CP031466.1_2979352_2980369_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|182aa|down_9|CP031466.1_2980408_2980954_-	pfam10604, Polyketide_cyc2, Polyketide cyclase / dehydrase and lipid transport
GCA_003368325.1_ASM336832v1	CP031467	Paraburkholderia caffeinilytica strain CF1 chromosome 2, complete sequence	1	3470174-3470286	1	CRISPRCasFinder	no	csa3	DinG,DEDDh,csa3,WYL,cas3	Type I-A	TTTGCATGGGACCAGAGTAAGCGCTAAAGCGCCAACTCT	39	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DinG,PD-DExK,DEDDh,WYL	NA,NA	NA|464aa|up_9|CP031467.1_3454237_3455629_+	TIGR03329, Phn_aa_oxid, putative aminophosphonate oxidoreductase	NA|124aa|up_8|CP031467.1_3455779_3456151_-	cd02227, cupin_TM1112-like, Thermotoga maritima TM1112 and related proteins, cupin domain	NA|327aa|up_7|CP031467.1_3458602_3459583_-	PRK09791, PRK09791, LysR family transcriptional regulator	NA|388aa|up_6|CP031467.1_3459680_3460844_+	cd05666, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily	NA|418aa|up_5|CP031467.1_3463216_3464470_-	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	NA|324aa|up_4|CP031467.1_3464466_3465438_-	PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional	NA|461aa|up_3|CP031467.1_3465954_3467337_+	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and    metabolism]	csa3|136aa|up_2|CP031467.1_3467599_3468007_+	COG0640, ArsR, Predicted transcriptional regulators [Transcription]	NA|245aa|up_1|CP031467.1_3468393_3469128_+	pfam05988, DUF899, Bacterial protein of unknown function (DUF899)	NA|282aa|up_0|CP031467.1_3469189_3470035_-	COG2771, CsgD, DNA-binding HTH domain-containing proteins [Transcription]	NA|279aa|down_0|CP031467.1_3470328_3471165_+	cd07576, R-amidase_like, Pseudomonas sp	NA|456aa|down_1|CP031467.1_3471343_3472711_+	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|229aa|down_2|CP031467.1_3475973_3476660_+	cd02423, Peptidase_C39G, A sub-family of peptidase family C39	NA|413aa|down_3|CP031467.1_3476665_3477904_+	PRK10811, rne, ribonuclease E; Reviewed	NA|466aa|down_4|CP031467.1_3477969_3479367_-	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit	NA|299aa|down_5|CP031467.1_3480824_3481721_+	cd08478, PBP2_CrgA, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA, contains the type 2 periplasmic binding domain	NA|508aa|down_6|CP031467.1_3481982_3483506_+	PRK09367, PRK09367, histidine ammonia-lyase; Provisional	NA|232aa|down_7|CP031467.1_3483542_3484238_+	TIGR02018, Histidine_utilization_repressor, histidine utilization repressor, proteobacterial	NA|563aa|down_8|CP031467.1_3484310_3485999_+	PRK05414, PRK05414, urocanate hydratase; Provisional	NA|408aa|down_9|CP031467.1_3486776_3488000_+	PRK09356, PRK09356, imidazolonepropionase; Validated
GCA_003368325.1_ASM336832v1	CP031467	Paraburkholderia caffeinilytica strain CF1 chromosome 2, complete sequence	2	4019492-4019568	2	CRISPRCasFinder	no		DinG,DEDDh,csa3,WYL,cas3	Orphan	GCGCTAAAGCGCGAACTCCGGTCGAC	26	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DinG,PD-DExK,DEDDh,WYL	NA,NA	NA|834aa|up_9|CP031467.1_4001260_4003762_+	COG2982, AsmA, Uncharacterized protein involved in outer membrane biogenesis [Cell envelope biogenesis, outer membrane]	NA|537aa|up_8|CP031467.1_4004824_4006435_+	COG4251, COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]	NA|160aa|up_7|CP031467.1_4006540_4007020_+	cd17557, REC_Rcp-like, phosphoacceptor receiver (REC) domain of cyanobacterial phytochrome response regulator Rcp and similar domains	NA|661aa|up_6|CP031467.1_4007126_4009109_+	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS	NA|148aa|up_5|CP031467.1_4009286_4009730_-	PRK13952, mscL, large conductance mechanosensitive channel protein MscL	NA|345aa|up_4|CP031467.1_4009823_4010858_-	cd01562, Thr-dehyd, Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen	NA|1161aa|up_3|CP031467.1_4012363_4015846_-	COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]	NA|160aa|up_2|CP031467.1_4016730_4017210_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|183aa|up_1|CP031467.1_4017360_4017909_-	cd03015, PRX_Typ2cys, Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides	NA|450aa|up_0|CP031467.1_4018095_4019445_-	PRK09467, envZ, osmolarity sensor protein; Provisional	NA|245aa|down_0|CP031467.1_4019587_4020322_-	PRK09468, ompR, osmolarity response regulator; Provisional	NA|548aa|down_1|CP031467.1_4021044_4022688_+	pfam08811, DUF1800, Protein of unknown function (DUF1800)	NA|414aa|down_2|CP031467.1_4022835_4024077_+	COG4102, COG4102, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1148aa|down_3|CP031467.1_4026060_4029504_+	COG5373, COG5373, Predicted membrane protein [Function unknown]	NA|151aa|down_4|CP031467.1_4031248_4031701_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|382aa|down_5|CP031467.1_4031764_4032910_-	pfam02595, Gly_kinase, Glycerate kinase family	NA|449aa|down_6|CP031467.1_4033481_4034828_+	PRK01490, tig, trigger factor; Provisional	NA|212aa|down_7|CP031467.1_4035063_4035699_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|424aa|down_8|CP031467.1_4035896_4037168_+	PRK05342, clpX, ATP-dependent Clp protease ATP-binding subunit ClpX	NA|782aa|down_9|CP031467.1_4037451_4039797_+	COG0466, Lon, ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
