assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003367415.1_ASM336741v1	CP031418	Nocardia farcinica strain W6977 chromosome, complete genome	3	2943149-2943255	3	CRISPRCasFinder	no		csa3,WYL,cas4,DEDDh,cas3,DinG,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	CGCCTGAGCGGGTCAGCGGCCGGAGGCGG	29	1	1	2943178-2943226	CP031418.1_2401509-2401557	NA	1	1	Orphan	csa3,WYL,cas4,DEDDh,cas3,DinG,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA|455aa|up_5|CP031418.1_2934624_2935989_+,NA|338aa|up_4|CP031418.1_2936289_2937303_+,NA|477aa|up_3|CP031418.1_2937325_2938756_+,NA|78aa|up_1|CP031418.1_2940055_2940289_-,NA|222aa|down_2|CP031418.1_2944984_2945650_+,NA|217aa|down_5|CP031418.1_2949049_2949700_+	NA|546aa|up_9|CP031418.1_2928038_2929676_+	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles	NA|313aa|up_8|CP031418.1_2929850_2930789_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|374aa|up_7|CP031418.1_2930831_2931953_-	COG0412, COG0412, Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]	NA|232aa|up_6|CP031418.1_2933734_2934430_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|455aa|up_5|CP031418.1_2934624_2935989_+	NA	NA|338aa|up_4|CP031418.1_2936289_2937303_+	NA	NA|477aa|up_3|CP031418.1_2937325_2938756_+	NA	NA|402aa|up_2|CP031418.1_2938841_2940047_+	cd07385, MPP_YkuE_C, Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain	NA|78aa|up_1|CP031418.1_2940055_2940289_-	NA	NA|487aa|up_0|CP031418.1_2940666_2942127_+	cd00615, Orn_deC_like, Ornithine decarboxylase family	NA|261aa|down_0|CP031418.1_2943286_2944069_+	cd02869, PseudoU_synth_RluA_like, Pseudouridine synthase, RluA family	NA|260aa|down_1|CP031418.1_2944162_2944942_+	cd07402, MPP_GpdQ, Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain	NA|222aa|down_2|CP031418.1_2944984_2945650_+	NA	NA|716aa|down_3|CP031418.1_2945707_2947855_+	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|246aa|down_4|CP031418.1_2947851_2948589_+	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|217aa|down_5|CP031418.1_2949049_2949700_+	NA	NA|60aa|down_6|CP031418.1_2949807_2949987_-	pfam14013, MT0933_antitox, MT0933-like antitoxin protein	NA|808aa|down_7|CP031418.1_2950092_2952516_-	PRK09632, PRK09632, ATP-dependent DNA ligase; Reviewed	NA|71aa|down_8|CP031418.1_2952571_2952784_-	pfam14013, MT0933_antitox, MT0933-like antitoxin protein	NA|381aa|down_9|CP031418.1_2952861_2954004_-	cd16283, RomA-like_MBL-fold, Enterobacter cloacae RomA and related proteins; MBL-fold metallo hydrolase domain
GCA_003367415.1_ASM336741v1	CP031418	Nocardia farcinica strain W6977 chromosome, complete genome	4	3248672-3248768	4	CRISPRCasFinder	no	csa3	csa3,WYL,cas4,DEDDh,cas3,DinG,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Type I-A	GGCACAGCCTGAGCGGTCAGCGG	23	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas4,DEDDh,cas3,DinG,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA,NA|153aa|down_1|CP031418.1_3249823_3250282_-,NA|166aa|down_4|CP031418.1_3252522_3253020_-	NA|294aa|up_9|CP031418.1_3237459_3238341_+	TIGR03343, 2-hydroxy-6-oxo-6-phenylhexa-24-dienoate_hydrolase, 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase	NA|303aa|up_8|CP031418.1_3238343_3239252_+	TIGR03213, Biphenyl-23-diol_12-dioxygenase_1, 2,3-dihydroxybiphenyl 1,2-dioxygenase	NA|196aa|up_7|CP031418.1_3239298_3239886_+	smart00903, Flavin_Reduct, Flavin reductase like domain	NA|219aa|up_6|CP031418.1_3239959_3240616_+	cd08899, SRPBCC_CalC_Aha1-like_6, Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins	csa3|129aa|up_5|CP031418.1_3240615_3241002_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|379aa|up_4|CP031418.1_3241067_3242204_+	COG3177, COG3177, Fic family protein [Function unknown]	NA|346aa|up_3|CP031418.1_3242467_3243505_-	PRK08195, PRK08195, 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated	NA|303aa|up_2|CP031418.1_3243518_3244427_-	PRK08300, PRK08300, acetaldehyde dehydrogenase; Validated	NA|262aa|up_1|CP031418.1_3244437_3245223_-	COG3971, COG3971, 2-keto-4-pentenoate hydratase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|545aa|up_0|CP031418.1_3245224_3246859_-	PRK07121, PRK07121, FAD-binding protein	NA|287aa|down_0|CP031418.1_3248876_3249737_+	PLN02864, PLN02864, enoyl-CoA hydratase	NA|153aa|down_1|CP031418.1_3249823_3250282_-	NA	NA|425aa|down_2|CP031418.1_3250278_3251553_-	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only]	NA|321aa|down_3|CP031418.1_3251549_3252512_-	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|166aa|down_4|CP031418.1_3252522_3253020_-	NA	NA|324aa|down_5|CP031418.1_3253016_3253988_-	pfam13559, DUF4129, Domain of unknown function (DUF4129)	NA|317aa|down_6|CP031418.1_3254109_3255060_-	COG1485, COG1485, Predicted ATPase [General function prediction only]	NA|195aa|down_7|CP031418.1_3255139_3255724_+	COG3226, COG3226, Uncharacterized protein conserved in bacteria [Function unknown]	NA|152aa|down_8|CP031418.1_3255720_3256176_-	cd04683, Nudix_Hydrolase_24, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|388aa|down_9|CP031418.1_3256221_3257385_-	PRK07855, PRK07855, lipid-transfer protein; Provisional
GCA_003367415.1_ASM336741v1	CP031418	Nocardia farcinica strain W6977 chromosome, complete genome	5	3445500-3445605	5	CRISPRCasFinder	no		csa3,WYL,cas4,DEDDh,cas3,DinG,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	AGCGCAGCGTCACCACGCAGGGCGCCCC	28	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas4,DEDDh,cas3,DinG,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA|239aa|up_2|CP031418.1_3443534_3444251_-,NA|204aa|down_4|CP031418.1_3450968_3451580_+	NA|1146aa|up_9|CP031418.1_3429061_3432499_-	COG2909, MalT, ATP-dependent transcriptional regulator [Transcription]	NA|717aa|up_8|CP031418.1_3432875_3435026_-	PRK11730, fadB, fatty acid oxidation complex subunit alpha FadB	NA|405aa|up_7|CP031418.1_3435065_3436280_-	PRK08242, PRK08242, acetyl-CoA C-acetyltransferase	NA|804aa|up_6|CP031418.1_3436537_3438949_-	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	NA|308aa|up_5|CP031418.1_3438999_3439923_-	COG2321, COG2321, Predicted metalloprotease [General function prediction only]	NA|539aa|up_4|CP031418.1_3440252_3441869_+	pfam09972, DUF2207, Predicted membrane protein (DUF2207)	NA|422aa|up_3|CP031418.1_3441891_3443157_-	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|239aa|up_2|CP031418.1_3443534_3444251_-	NA	NA|194aa|up_1|CP031418.1_3444361_3444943_-	TIGR03252, TIGR03252, uncharacterized HhH-GPD family protein	NA|151aa|up_0|CP031418.1_3445023_3445476_+	pfam18029, Glyoxalase_6, Glyoxalase-like domain	NA|269aa|down_0|CP031418.1_3446724_3447531_+	PRK08317, PRK08317, hypothetical protein; Provisional	NA|146aa|down_1|CP031418.1_3447544_3447982_+	cd08865, SRPBCC_10, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins	NA|430aa|down_2|CP031418.1_3447987_3449277_-	pfam12897, Aminotran_MocR, Alanine-glyoxylate amino-transferase	NA|311aa|down_3|CP031418.1_3449841_3450774_-	PRK07920, PRK07920, lipid A biosynthesis lauroyl acyltransferase; Provisional	NA|204aa|down_4|CP031418.1_3450968_3451580_+	NA	NA|481aa|down_5|CP031418.1_3451706_3453149_-	TIGR02946, Putative_diacyglycerol_O-acyltransferase_Mb3115, acyltransferase, WS/DGAT/MGAT	NA|70aa|down_6|CP031418.1_3453242_3453452_-	pfam04149, DUF397, Domain of unknown function (DUF397)	NA|170aa|down_7|CP031418.1_3453875_3454385_+	pfam03745, DUF309, Domain of unknown function (DUF309)	NA|312aa|down_8|CP031418.1_3454377_3455313_+	PRK05710, PRK05710, tRNA glutamyl-Q(34) synthetase GluQRS	NA|234aa|down_9|CP031418.1_3455371_3456073_+	pfam06271, RDD, RDD family
GCA_003367415.1_ASM336741v1	CP031418	Nocardia farcinica strain W6977 chromosome, complete genome	6	3451573-3451677	6	CRISPRCasFinder	no		csa3,WYL,cas4,DEDDh,cas3,DinG,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	CCGCCTGAGCGGTCAGCGGCCGGAGGCGG	29	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas4,DEDDh,cas3,DinG,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA|239aa|up_6|CP031418.1_3443534_3444251_-,NA	NA|308aa|up_9|CP031418.1_3438999_3439923_-	COG2321, COG2321, Predicted metalloprotease [General function prediction only]	NA|539aa|up_8|CP031418.1_3440252_3441869_+	pfam09972, DUF2207, Predicted membrane protein (DUF2207)	NA|422aa|up_7|CP031418.1_3441891_3443157_-	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|239aa|up_6|CP031418.1_3443534_3444251_-	NA	NA|194aa|up_5|CP031418.1_3444361_3444943_-	TIGR03252, TIGR03252, uncharacterized HhH-GPD family protein	NA|151aa|up_4|CP031418.1_3445023_3445476_+	pfam18029, Glyoxalase_6, Glyoxalase-like domain	NA|269aa|up_3|CP031418.1_3446724_3447531_+	PRK08317, PRK08317, hypothetical protein; Provisional	NA|146aa|up_2|CP031418.1_3447544_3447982_+	cd08865, SRPBCC_10, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins	NA|430aa|up_1|CP031418.1_3447987_3449277_-	pfam12897, Aminotran_MocR, Alanine-glyoxylate amino-transferase	NA|311aa|up_0|CP031418.1_3449841_3450774_-	PRK07920, PRK07920, lipid A biosynthesis lauroyl acyltransferase; Provisional	NA|481aa|down_0|CP031418.1_3451706_3453149_-	TIGR02946, Putative_diacyglycerol_O-acyltransferase_Mb3115, acyltransferase, WS/DGAT/MGAT	NA|70aa|down_1|CP031418.1_3453242_3453452_-	pfam04149, DUF397, Domain of unknown function (DUF397)	NA|170aa|down_2|CP031418.1_3453875_3454385_+	pfam03745, DUF309, Domain of unknown function (DUF309)	NA|312aa|down_3|CP031418.1_3454377_3455313_+	PRK05710, PRK05710, tRNA glutamyl-Q(34) synthetase GluQRS	NA|234aa|down_4|CP031418.1_3455371_3456073_+	pfam06271, RDD, RDD family	NA|179aa|down_5|CP031418.1_3456136_3456673_-	pfam13828, DUF4190, Domain of unknown function (DUF4190)	NA|238aa|down_6|CP031418.1_3456771_3457485_+	pfam02592, Vut_1, Putative vitamin uptake transporter	NA|420aa|down_7|CP031418.1_3457503_3458763_-	PRK00112, tgt, queuine tRNA-ribosyltransferase; Provisional	NA|640aa|down_8|CP031418.1_3458814_3460734_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|579aa|down_9|CP031418.1_3460730_3462467_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
GCA_003367415.1_ASM336741v1	CP031418	Nocardia farcinica strain W6977 chromosome, complete genome	8	4422976-4423309	8,1,1	CRISPRCasFinder,CRT,PILER-CR	no		csa3,WYL,cas4,DEDDh,cas3,DinG,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	GGGCTCATCCCCGCGTGCGCGGGGAGCAC,GGGCTCATCCCCGCGTGCGCGGGGAGCAC,GGGCTCATCCCCGCGTGCGCGGGGAGCAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	5,5,4	5	Orphan	csa3,WYL,cas4,DEDDh,cas3,DinG,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA,NA	NA|418aa|up_9|CP031418.1_4410361_4411615_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|417aa|up_8|CP031418.1_4411782_4413033_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|235aa|up_7|CP031418.1_4413191_4413896_+	cd03139, GATase1_PfpI_2, Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus	NA|649aa|up_6|CP031418.1_4413929_4415876_-	PRK03584, PRK03584, acetoacetate--CoA ligase	NA|275aa|up_5|CP031418.1_4415900_4416725_-	COG2301, CitE, Citrate lyase beta subunit [Carbohydrate transport and metabolism]	NA|168aa|up_4|CP031418.1_4416721_4417225_-	cd03451, FkbR2, FkbR2 is a Streptomyces hygroscopicus protein with a hot dog fold that belongs to a conserved family of proteins found in prokaryotes and archaea but not in eukaryotes	NA|387aa|up_3|CP031418.1_4417221_4418382_-	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases	NA|696aa|up_2|CP031418.1_4418378_4420466_-	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]	NA|532aa|up_1|CP031418.1_4420474_4422070_-	PLN02820, PLN02820, 3-methylcrotonyl-CoA carboxylase, beta chain	NA|210aa|up_0|CP031418.1_4422188_4422818_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|586aa|down_0|CP031418.1_4423568_4425326_-	PLN02286, PLN02286, arginine-tRNA ligase	NA|242aa|down_1|CP031418.1_4425384_4426110_-	COG5260, TRF4, DNA polymerase sigma [DNA replication, recombination, and repair]	NA|306aa|down_2|CP031418.1_4426106_4427024_-	pfam08242, Methyltransf_12, Methyltransferase domain	NA|466aa|down_3|CP031418.1_4427020_4428418_-	cd06450, DOPA_deC_like, DOPA decarboxylase family	NA|246aa|down_4|CP031418.1_4428883_4429621_+	pfam13560, HTH_31, Helix-turn-helix domain	NA|196aa|down_5|CP031418.1_4429643_4430231_+	cd07890, CYTH-like_AC_IV-like, Adenylyl cyclase (AC) class IV-like, a subgroup of the CYTH-like superfamily	NA|252aa|down_6|CP031418.1_4431453_4432209_+	COG2875, CobM, Precorrin-4 methylase [Coenzyme metabolism]	NA|202aa|down_7|CP031418.1_4476171_4476777_-	smart00746, TRASH, metallochaperone-like domain	NA|205aa|down_8|CP031418.1_4477456_4478071_+	pfam02909, TetR_C, Tetracyclin repressor, C-terminal all-alpha domain	NA|514aa|down_9|CP031418.1_4478356_4479898_-	pfam02342, TerD, TerD domain
GCA_003367415.1_ASM336741v1	CP031418	Nocardia farcinica strain W6977 chromosome, complete genome	9	4430501-4431199	2,2,9	CRT,PILER-CR,CRISPRCasFinder	no		csa3,WYL,cas4,DEDDh,cas3,DinG,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	NGGGCTCATCCCCGCGTGCGCGGGGAGCAC,GGGCTCATCCCCGCGTGCGCGGGGAGCAC,GGGCTCATCCCCGCGTGCGCGGGGAGCAC	30,29,29	1	1	4431078-4431109	CP031418.1_5850804-5850773	I-E:I-E:I-E	11,10,10	11	Orphan	csa3,WYL,cas4,DEDDh,cas3,DinG,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA,NA|176aa|down_4|CP031418.1_4479953_4480481_-	NA|387aa|up_9|CP031418.1_4417221_4418382_-	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases	NA|696aa|up_8|CP031418.1_4418378_4420466_-	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]	NA|532aa|up_7|CP031418.1_4420474_4422070_-	PLN02820, PLN02820, 3-methylcrotonyl-CoA carboxylase, beta chain	NA|210aa|up_6|CP031418.1_4422188_4422818_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|586aa|up_5|CP031418.1_4423568_4425326_-	PLN02286, PLN02286, arginine-tRNA ligase	NA|242aa|up_4|CP031418.1_4425384_4426110_-	COG5260, TRF4, DNA polymerase sigma [DNA replication, recombination, and repair]	NA|306aa|up_3|CP031418.1_4426106_4427024_-	pfam08242, Methyltransf_12, Methyltransferase domain	NA|466aa|up_2|CP031418.1_4427020_4428418_-	cd06450, DOPA_deC_like, DOPA decarboxylase family	NA|246aa|up_1|CP031418.1_4428883_4429621_+	pfam13560, HTH_31, Helix-turn-helix domain	NA|196aa|up_0|CP031418.1_4429643_4430231_+	cd07890, CYTH-like_AC_IV-like, Adenylyl cyclase (AC) class IV-like, a subgroup of the CYTH-like superfamily	NA|252aa|down_0|CP031418.1_4431453_4432209_+	COG2875, CobM, Precorrin-4 methylase [Coenzyme metabolism]	NA|202aa|down_1|CP031418.1_4476171_4476777_-	smart00746, TRASH, metallochaperone-like domain	NA|205aa|down_2|CP031418.1_4477456_4478071_+	pfam02909, TetR_C, Tetracyclin repressor, C-terminal all-alpha domain	NA|514aa|down_3|CP031418.1_4478356_4479898_-	pfam02342, TerD, TerD domain	NA|176aa|down_4|CP031418.1_4479953_4480481_-	NA	NA|267aa|down_5|CP031418.1_4480544_4481345_-	pfam04454, Linocin_M18, Encapsulating protein for peroxidase	NA|348aa|down_6|CP031418.1_4481341_4482385_-	pfam04261, Dyp_perox, Dyp-type peroxidase family	NA|109aa|down_7|CP031418.1_4482402_4482729_-	cd02230, cupin_HP0902-like, Helicobacter pylori HP0902 and related proteins, cupin domain	NA|172aa|down_8|CP031418.1_4482918_4483434_-	pfam00186, DHFR_1, Dihydrofolate reductase	NA|267aa|down_9|CP031418.1_4483430_4484231_-	PRK01827, thyA, thymidylate synthase; Reviewed
GCA_003367415.1_ASM336741v1	CP031418	Nocardia farcinica strain W6977 chromosome, complete genome	10	4661609-4661729	10	CRISPRCasFinder	no		csa3,WYL,cas4,DEDDh,cas3,DinG,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	CGGCCTGCGTGGTGACGCTGCGCTGCCGCCTCCGGCCGCTGACC	44	1	2	4661653-4661685|4661653-4661685	CP031418.1_2359479-2359447|CP031418.1_2625886-2625854	NA	1	1	Orphan	csa3,WYL,cas4,DEDDh,cas3,DinG,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA,NA|99aa|down_6|CP031418.1_4667385_4667682_+,NA|137aa|down_9|CP031418.1_4672525_4672936_-	NA|490aa|up_9|CP031418.1_4652430_4653900_-	cd06842, PLPDE_III_Y4yA_like, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Y4yA	NA|321aa|up_8|CP031418.1_4653959_4654922_-	COG2423, COG2423, Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]	NA|384aa|up_7|CP031418.1_4654941_4656093_-	TIGR03946, viomycin_VioC, arginine beta-hydroxylase, Fe(II)/alpha-ketoglutarate-dependent	NA|241aa|up_6|CP031418.1_4656339_4657062_+	COG2951, MltB, Membrane-bound lytic murein transglycosylase B [Cell envelope biogenesis, outer membrane]	NA|429aa|up_5|CP031418.1_4657173_4658460_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_4|CP031418.1_4658493_4659165_+	pfam04977, DivIC, Septum formation initiator	NA|176aa|up_3|CP031418.1_4659161_4659689_+	COG1507, COG1507, Uncharacterized conserved protein [Function unknown]	NA|316aa|up_2|CP031418.1_4659681_4660629_+	COG0248, GppA, Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]	NA|219aa|up_1|CP031418.1_4660687_4661344_+	PRK14967, PRK14967, putative methyltransferase; Provisional	NA|70aa|up_0|CP031418.1_4661396_4661606_+	pfam09360, zf-CDGSH, Iron-binding zinc finger CDGSH type	NA|336aa|down_0|CP031418.1_4661807_4662815_-	pfam14518, Haem_oxygenas_2, Iron-containing redox enzyme	NA|184aa|down_1|CP031418.1_4662873_4663425_-	cd07812, SRPBCC, START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily	NA|489aa|down_2|CP031418.1_4663454_4664921_+	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|496aa|down_3|CP031418.1_4664937_4666425_+	TIGR00909, putative_amino_acid_transporter, amino acid transporter	NA|55aa|down_4|CP031418.1_4666626_4666791_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|69aa|down_5|CP031418.1_4666908_4667115_-	pfam04149, DUF397, Domain of unknown function (DUF397)	NA|99aa|down_6|CP031418.1_4667385_4667682_+	NA	NA|147aa|down_7|CP031418.1_4670792_4671233_-	pfam04075, F420H2_quin_red, F420H(2)-dependent quinone reductase	NA|264aa|down_8|CP031418.1_4671766_4672558_+	pfam01381, HTH_3, Helix-turn-helix	NA|137aa|down_9|CP031418.1_4672525_4672936_-	NA
GCA_003367415.1_ASM336741v1	CP031418	Nocardia farcinica strain W6977 chromosome, complete genome	11	4850141-4850264	11	CRISPRCasFinder	no		csa3,WYL,cas4,DEDDh,cas3,DinG,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	CACCGCCCGACCGGGTCAGCGGCCGGAGGCGGTAGCGCAGCGTGACC	47	1	1	4850188-4850217	CP031418.1_3135226-3135197	NA	1	1	Orphan	csa3,WYL,cas4,DEDDh,cas3,DinG,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA|241aa|up_7|CP031418.1_4839668_4840391_-,NA|160aa|up_2|CP031418.1_4844977_4845457_+,NA|133aa|down_5|CP031418.1_4855861_4856260_-	NA|260aa|up_9|CP031418.1_4837951_4838731_-	COG1277, NosY, ABC-type transport system involved in multi-copper enzyme maturation, permease component [General function prediction only]	NA|315aa|up_8|CP031418.1_4838727_4839672_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|241aa|up_7|CP031418.1_4839668_4840391_-	NA	NA|366aa|up_6|CP031418.1_4840527_4841625_-	COG0435, ECM4, Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]	NA|265aa|up_5|CP031418.1_4841663_4842458_+	COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]	NA|421aa|up_4|CP031418.1_4842560_4843823_+	pfam00501, AMP-binding, AMP-binding enzyme	NA|249aa|up_3|CP031418.1_4843826_4844573_-	pfam13350, Y_phosphatase3, Tyrosine phosphatase family	NA|160aa|up_2|CP031418.1_4844977_4845457_+	NA	NA|396aa|up_1|CP031418.1_4845538_4846726_+	cd06813, PLPDE_III_DSD_D-TA_like_2, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 2	NA|1114aa|up_0|CP031418.1_4846726_4850068_-	COG1112, COG1112, Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair]	NA|570aa|down_0|CP031418.1_4850280_4851990_-	PRK11634, PRK11634, ATP-dependent RNA helicase DeaD; Provisional	NA|285aa|down_1|CP031418.1_4852151_4853006_+	cd07581, nitrilase_3, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|207aa|down_2|CP031418.1_4853019_4853640_+	COG1926, COG1926, Predicted phosphoribosyltransferases [General function prediction only]	NA|280aa|down_3|CP031418.1_4853644_4854484_-	pfam14011, ESX-1_EspG, EspG family	NA|463aa|down_4|CP031418.1_4854480_4855869_-	pfam15782, GREB1, Gene regulated by oestrogen in breast cancer	NA|133aa|down_5|CP031418.1_4855861_4856260_-	NA	NA|246aa|down_6|CP031418.1_4856325_4857063_-	COG2267, PldB, Lysophospholipase [Lipid metabolism]	NA|237aa|down_7|CP031418.1_4857174_4857885_-	PRK10811, rne, ribonuclease E; Reviewed	NA|391aa|down_8|CP031418.1_4858118_4859291_+	TIGR03204, pimC_large, pimeloyl-CoA dehydrogenase, large subunit	NA|377aa|down_9|CP031418.1_4859300_4860431_+	TIGR03203, pimD_small, pimeloyl-CoA dehydrogenase, small subunit
GCA_003367415.1_ASM336741v1	CP031418	Nocardia farcinica strain W6977 chromosome, complete genome	12	4861586-4861710	12	CRISPRCasFinder	no		csa3,WYL,cas4,DEDDh,cas3,DinG,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	ACCGCCTGAGCGGGTCAGCGGCCGGAGGCGGTAGCGCAGCGTCACC	46	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas4,DEDDh,cas3,DinG,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA|133aa|up_4|CP031418.1_4855861_4856260_-,NA	NA|570aa|up_9|CP031418.1_4850280_4851990_-	PRK11634, PRK11634, ATP-dependent RNA helicase DeaD; Provisional	NA|285aa|up_8|CP031418.1_4852151_4853006_+	cd07581, nitrilase_3, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|207aa|up_7|CP031418.1_4853019_4853640_+	COG1926, COG1926, Predicted phosphoribosyltransferases [General function prediction only]	NA|280aa|up_6|CP031418.1_4853644_4854484_-	pfam14011, ESX-1_EspG, EspG family	NA|463aa|up_5|CP031418.1_4854480_4855869_-	pfam15782, GREB1, Gene regulated by oestrogen in breast cancer	NA|133aa|up_4|CP031418.1_4855861_4856260_-	NA	NA|246aa|up_3|CP031418.1_4856325_4857063_-	COG2267, PldB, Lysophospholipase [Lipid metabolism]	NA|237aa|up_2|CP031418.1_4857174_4857885_-	PRK10811, rne, ribonuclease E; Reviewed	NA|391aa|up_1|CP031418.1_4858118_4859291_+	TIGR03204, pimC_large, pimeloyl-CoA dehydrogenase, large subunit	NA|377aa|up_0|CP031418.1_4859300_4860431_+	TIGR03203, pimD_small, pimeloyl-CoA dehydrogenase, small subunit	NA|276aa|down_0|CP031418.1_4861808_4862636_+	COG3393, COG3393, Predicted acetyltransferase [General function prediction only]	NA|317aa|down_1|CP031418.1_4862620_4863571_-	cd07938, DRE_TIM_HMGL, 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain	NA|257aa|down_2|CP031418.1_4863832_4864603_-	PRK01060, PRK01060, endonuclease IV; Provisional	NA|575aa|down_3|CP031418.1_4866613_4868338_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|549aa|down_4|CP031418.1_4868341_4869988_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|162aa|down_5|CP031418.1_4869992_4870478_-	cd00340, GSH_Peroxidase, Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate	NA|531aa|down_6|CP031418.1_4870496_4872089_-	PRK09407, gabD2, succinic semialdehyde dehydrogenase; Reviewed	NA|490aa|down_7|CP031418.1_4872315_4873785_+	TIGR04284, aldehyde_dehydrogenase, aldehyde dehydrogenase, Rv0768 family	NA|250aa|down_8|CP031418.1_4873820_4874570_+	PRK07774, PRK07774, SDR family oxidoreductase	NA|293aa|down_9|CP031418.1_4874566_4875445_+	COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
GCA_003367415.1_ASM336741v1	CP031418	Nocardia farcinica strain W6977 chromosome, complete genome	13	4943744-4943868	13	CRISPRCasFinder	no		csa3,WYL,cas4,DEDDh,cas3,DinG,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	ACGCGTGCGCTGCCGGCTCCGGGCGCTGACCCGGCTCAGGCGGTG	45	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas4,DEDDh,cas3,DinG,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA,NA|180aa|down_2|CP031418.1_4947956_4948496_-	NA|386aa|up_9|CP031418.1_4932009_4933167_+	cd03512, Alkane-hydroxylase, Alkane hydroxylase is a bacterial, integral-membrane di-iron enzyme that shares a requirement for iron and oxygen for activity similar to that of the non-heme integral-membrane acyl coenzyme A (CoA) desaturases and acyl lipid desaturases	NA|495aa|up_8|CP031418.1_4933249_4934734_+	pfam05221, AdoHcyase, S-adenosyl-L-homocysteine hydrolase	NA|216aa|up_7|CP031418.1_4934733_4935381_+	PRK07933, PRK07933, dTMP kinase	NA|226aa|up_6|CP031418.1_4935460_4936138_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|589aa|up_5|CP031418.1_4936233_4938000_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|605aa|up_4|CP031418.1_4937996_4939811_+	PRK13616, PRK13616, MtrAB system accessory protein LpqB	NA|215aa|up_3|CP031418.1_4939907_4940552_+	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only]	NA|235aa|up_2|CP031418.1_4940803_4941508_+	TIGR00741, Probable_sigma54_modulation_protein_ORF3_ORF95	NA|431aa|up_1|CP031418.1_4941651_4942944_+	PRK08963, fadI, 3-ketoacyl-CoA thiolase; Reviewed	NA|218aa|up_0|CP031418.1_4943022_4943676_-	cd02145, BluB, 5,6-dimethylbenzimidazole synthase	NA|485aa|down_0|CP031418.1_4945197_4946652_-	COG3239, DesA, Fatty acid desaturase [Lipid metabolism]	NA|379aa|down_1|CP031418.1_4946700_4947837_-	cd06216, FNR_iron_sulfur_binding_2, Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain	NA|180aa|down_2|CP031418.1_4947956_4948496_-	NA	NA|469aa|down_3|CP031418.1_4948506_4949913_-	TIGR02946, Putative_diacyglycerol_O-acyltransferase_Mb3115, acyltransferase, WS/DGAT/MGAT	NA|938aa|down_4|CP031418.1_4950268_4953082_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|388aa|down_5|CP031418.1_4953237_4954401_-	cd06170, LuxR_C_like, C-terminal DNA-binding domain of LuxR-like proteins	NA|297aa|down_6|CP031418.1_4954399_4955290_+	pfam02585, PIG-L, GlcNAc-PI de-N-acetylase	NA|452aa|down_7|CP031418.1_4955286_4956642_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|105aa|down_8|CP031418.1_4957083_4957398_+	pfam06013, WXG100, Proteins of 100 residues with WXG	NA|103aa|down_9|CP031418.1_4957419_4957728_+	pfam06013, WXG100, Proteins of 100 residues with WXG
GCA_003367415.1_ASM336741v1	CP031418	Nocardia farcinica strain W6977 chromosome, complete genome	14	5113954-5114348	3,14,3	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11	csa3,WYL,cas4,DEDDh,cas3,DinG,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Type I-E	GTGCTCCCCGCGCATGCGGGGATGAGCCC,GTGCTCCCCGCGCATGCGGGGATGAGCCC,GTGCTCCCCGCGCATGCGGGGATGAGCCC	29,29,29	1	1	5114227-5114258	CP031418.1_5850267-5850236	I-E:I-E:I-E	5,6,6	6	TypeI-E	csa3,WYL,cas4,DEDDh,cas3,DinG,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA,NA	NA|149aa|up_9|CP031418.1_5103745_5104192_-	cd07235, MRD, Mitomycin C resistance protein (MRD)	NA|138aa|up_8|CP031418.1_5104188_5104602_-	cd16345, LMWP_ArsC, Arsenate reductase of the LMWP family	NA|304aa|up_7|CP031418.1_5104782_5105694_-	pfam09995, DUF2236, Uncharacterized protein conserved in bacteria (DUF2236)	NA|249aa|up_6|CP031418.1_5105818_5106565_+	cd01407, SIR2-fam, SIR2 family of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose	NA|433aa|up_5|CP031418.1_5106587_5107886_-	TIGR01679, bact_FAD_ox, FAD-linked oxidoreductase	NA|228aa|up_4|CP031418.1_5107940_5108624_-	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|141aa|up_3|CP031418.1_5108790_5109213_+	COG0239, CrcB, Integral membrane protein possibly involved in chromosome condensation [Cell division and chromosome partitioning]	NA|121aa|up_2|CP031418.1_5109298_5109661_+	COG0239, CrcB, Integral membrane protein possibly involved in chromosome condensation [Cell division and chromosome partitioning]	NA|429aa|up_1|CP031418.1_5111341_5112628_+	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	NA|247aa|up_0|CP031418.1_5112662_5113403_+	pfam13462, Thioredoxin_4, Thioredoxin	NA|266aa|down_0|CP031418.1_5114567_5115365_+	pfam02517, Abi, CAAX protease self-immunity	NA|489aa|down_1|CP031418.1_5116853_5118320_+	pfam11855, DUF3375, Protein of unknown function (DUF3375)	NA|182aa|down_2|CP031418.1_5118386_5118932_+	pfam13835, DUF4194, Domain of unknown function (DUF4194)	NA|1131aa|down_3|CP031418.1_5118931_5122324_+	COG4913, COG4913, Uncharacterized protein conserved in bacteria [Function unknown]	NA|391aa|down_4|CP031418.1_5122316_5123489_+	COG4924, COG4924, Uncharacterized protein conserved in bacteria [Function unknown]	NA|263aa|down_5|CP031418.1_5123978_5124767_-	cd05403, NT_KNTase_like, Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins	NA|508aa|down_6|CP031418.1_5124807_5126331_-	PRK14995, PRK14995, SmvA family efflux MFS transporter	NA|193aa|down_7|CP031418.1_5126397_5126976_+	COG1309, AcrR, Transcriptional regulator [Transcription]	cas3|915aa|down_8|CP031418.1_5128350_5131095_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|553aa|down_9|CP031418.1_5131091_5132750_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1
GCA_003367415.1_ASM336741v1	CP031418	Nocardia farcinica strain W6977 chromosome, complete genome	15	5116053-5116508	15,4	CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e	csa3,WYL,cas4,DEDDh,cas3,DinG,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Type I-E	GTGCTCCCCGCGCACGCGGGGATGAGCCC,GTGCTCCCCGCGCACGCGGGGATGAGCCC	29,29	0	0	NA	NA	I-E:I-E	7,7	7	TypeI-E	csa3,WYL,cas4,DEDDh,cas3,DinG,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA,NA	NA|138aa|up_9|CP031418.1_5104188_5104602_-	cd16345, LMWP_ArsC, Arsenate reductase of the LMWP family	NA|304aa|up_8|CP031418.1_5104782_5105694_-	pfam09995, DUF2236, Uncharacterized protein conserved in bacteria (DUF2236)	NA|249aa|up_7|CP031418.1_5105818_5106565_+	cd01407, SIR2-fam, SIR2 family of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose	NA|433aa|up_6|CP031418.1_5106587_5107886_-	TIGR01679, bact_FAD_ox, FAD-linked oxidoreductase	NA|228aa|up_5|CP031418.1_5107940_5108624_-	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|141aa|up_4|CP031418.1_5108790_5109213_+	COG0239, CrcB, Integral membrane protein possibly involved in chromosome condensation [Cell division and chromosome partitioning]	NA|121aa|up_3|CP031418.1_5109298_5109661_+	COG0239, CrcB, Integral membrane protein possibly involved in chromosome condensation [Cell division and chromosome partitioning]	NA|429aa|up_2|CP031418.1_5111341_5112628_+	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	NA|247aa|up_1|CP031418.1_5112662_5113403_+	pfam13462, Thioredoxin_4, Thioredoxin	NA|266aa|up_0|CP031418.1_5114567_5115365_+	pfam02517, Abi, CAAX protease self-immunity	NA|489aa|down_0|CP031418.1_5116853_5118320_+	pfam11855, DUF3375, Protein of unknown function (DUF3375)	NA|182aa|down_1|CP031418.1_5118386_5118932_+	pfam13835, DUF4194, Domain of unknown function (DUF4194)	NA|1131aa|down_2|CP031418.1_5118931_5122324_+	COG4913, COG4913, Uncharacterized protein conserved in bacteria [Function unknown]	NA|391aa|down_3|CP031418.1_5122316_5123489_+	COG4924, COG4924, Uncharacterized protein conserved in bacteria [Function unknown]	NA|263aa|down_4|CP031418.1_5123978_5124767_-	cd05403, NT_KNTase_like, Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins	NA|508aa|down_5|CP031418.1_5124807_5126331_-	PRK14995, PRK14995, SmvA family efflux MFS transporter	NA|193aa|down_6|CP031418.1_5126397_5126976_+	COG1309, AcrR, Transcriptional regulator [Transcription]	cas3|915aa|down_7|CP031418.1_5128350_5131095_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|553aa|down_8|CP031418.1_5131091_5132750_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|217aa|down_9|CP031418.1_5132721_5133372_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2
GCA_003367415.1_ASM336741v1	CP031418	Nocardia farcinica strain W6977 chromosome, complete genome	16	5127468-5127985	16,5	CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	csa3,WYL,cas4,DEDDh,cas3,DinG,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Type I-E	GTGCTCCCCGCGCACGCGGGGATGAGCCC,GTGCTCCCCGCGNACGCGGGGATGAGCCC	29,29	0	0	NA	NA	I-E:I-E	8,8	8	TypeI-E	csa3,WYL,cas4,DEDDh,cas3,DinG,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA,NA|474aa|down_9|CP031418.1_5142332_5143754_+	NA|429aa|up_9|CP031418.1_5111341_5112628_+	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	NA|247aa|up_8|CP031418.1_5112662_5113403_+	pfam13462, Thioredoxin_4, Thioredoxin	NA|266aa|up_7|CP031418.1_5114567_5115365_+	pfam02517, Abi, CAAX protease self-immunity	NA|489aa|up_6|CP031418.1_5116853_5118320_+	pfam11855, DUF3375, Protein of unknown function (DUF3375)	NA|182aa|up_5|CP031418.1_5118386_5118932_+	pfam13835, DUF4194, Domain of unknown function (DUF4194)	NA|1131aa|up_4|CP031418.1_5118931_5122324_+	COG4913, COG4913, Uncharacterized protein conserved in bacteria [Function unknown]	NA|391aa|up_3|CP031418.1_5122316_5123489_+	COG4924, COG4924, Uncharacterized protein conserved in bacteria [Function unknown]	NA|263aa|up_2|CP031418.1_5123978_5124767_-	cd05403, NT_KNTase_like, Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins	NA|508aa|up_1|CP031418.1_5124807_5126331_-	PRK14995, PRK14995, SmvA family efflux MFS transporter	NA|193aa|up_0|CP031418.1_5126397_5126976_+	COG1309, AcrR, Transcriptional regulator [Transcription]	cas3|915aa|down_0|CP031418.1_5128350_5131095_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|553aa|down_1|CP031418.1_5131091_5132750_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|217aa|down_2|CP031418.1_5132721_5133372_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|380aa|down_3|CP031418.1_5133368_5134508_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|236aa|down_4|CP031418.1_5134504_5135212_+	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|225aa|down_5|CP031418.1_5135211_5135886_+	pfam08798, CRISPR_assoc, CRISPR associated protein	cas1|317aa|down_6|CP031418.1_5135882_5136833_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|126aa|down_7|CP031418.1_5136826_5137204_+	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978)	NA|719aa|down_8|CP031418.1_5139423_5141580_-	COG3973, COG3973, Superfamily I DNA and RNA helicases [General function prediction only]	NA|474aa|down_9|CP031418.1_5142332_5143754_+	NA
GCA_003367415.1_ASM336741v1	CP031418	Nocardia farcinica strain W6977 chromosome, complete genome	17	5137245-5138310	4,17,6	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	csa3,WYL,cas4,DEDDh,cas3,DinG,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Type I-E	GTGCTCCCCGCGCGTGCGGGGATGAG,GTGCTCCCCGCGCGTGCGGGGATGAGCCC,GTGCTCCCCGCGCGTGCGGGGATGAGCC	26,29,28	2	2	5137640-5137671|5137639-5137671	CP031420.1_3381-3412|CP031420.1_3380-3412	I-E:I-E:I-E	17,17,17	17	TypeI-E	csa3,WYL,cas4,DEDDh,cas3,DinG,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA,NA|474aa|down_1|CP031418.1_5142332_5143754_+	NA|508aa|up_9|CP031418.1_5124807_5126331_-	PRK14995, PRK14995, SmvA family efflux MFS transporter	NA|193aa|up_8|CP031418.1_5126397_5126976_+	COG1309, AcrR, Transcriptional regulator [Transcription]	cas3|915aa|up_7|CP031418.1_5128350_5131095_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|553aa|up_6|CP031418.1_5131091_5132750_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|217aa|up_5|CP031418.1_5132721_5133372_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|380aa|up_4|CP031418.1_5133368_5134508_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|236aa|up_3|CP031418.1_5134504_5135212_+	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|225aa|up_2|CP031418.1_5135211_5135886_+	pfam08798, CRISPR_assoc, CRISPR associated protein	cas1|317aa|up_1|CP031418.1_5135882_5136833_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|126aa|up_0|CP031418.1_5136826_5137204_+	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978)	NA|719aa|down_0|CP031418.1_5139423_5141580_-	COG3973, COG3973, Superfamily I DNA and RNA helicases [General function prediction only]	NA|474aa|down_1|CP031418.1_5142332_5143754_+	NA	NA|132aa|down_2|CP031418.1_5143880_5144276_+	cd08026, DUF326, Cysteine-rich 4 helical bundle widely conserved in bacteria	NA|315aa|down_3|CP031418.1_5144399_5145344_+	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold	NA|466aa|down_4|CP031418.1_5145547_5146945_+	COG1239, ChlI, Mg-chelatase subunit ChlI [Coenzyme metabolism]	NA|651aa|down_5|CP031418.1_5146941_5148894_+	COG4867, COG4867, Uncharacterized protein with a von Willebrand factor type A (vWA) domain [General function prediction only]	NA|221aa|down_6|CP031418.1_5148907_5149570_-	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|335aa|down_7|CP031418.1_5149578_5150583_-	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|304aa|down_8|CP031418.1_5150579_5151491_-	cd13596, PBP2_lipoprotein_GmpC, The periplasmic substrate-binding domain of the membrane-associated lipoprotein-9 GmpC; contains the type 2 periplasmic-binding protein fold	NA|115aa|down_9|CP031418.1_5151569_5151914_-	pfam09966, DUF2200, Uncharacterized protein conserved in bacteria (DUF2200)
GCA_003367415.1_ASM336741v1	CP031418	Nocardia farcinica strain W6977 chromosome, complete genome	18	5251868-5253114	18,5,7	CRISPRCasFinder,PILER-CR,CRT	no		csa3,WYL,cas4,DEDDh,cas3,DinG,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	GTGCTCCCCGCGCACGCGGGGATGAGCCC,GCTCCCCGCGCATGCGGGGATGAGCC,GCTCCCCGCGCATGCGGGGATGAGCCC	29,26,27	1	1	5252080-5252111	CP031418.1_3086196-3086165	I-E:I-E:I-E	20,19,20	20	Orphan	csa3,WYL,cas4,DEDDh,cas3,DinG,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA|76aa|up_0|CP031418.1_5251349_5251577_+,NA	NA|275aa|up_9|CP031418.1_5242874_5243699_-	PRK00768, nadE, ammonia-dependent NAD(+) synthetase	NA|207aa|up_8|CP031418.1_5243703_5244324_-	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|189aa|up_7|CP031418.1_5244474_5245041_+	COG0431, COG0431, Predicted flavoprotein [General function prediction only]	NA|78aa|up_6|CP031418.1_5245522_5245756_+	TIGR02194, Glutaredoxin-like_protein_NrdH, Glutaredoxin-like protein NrdH	NA|168aa|up_5|CP031418.1_5245801_5246305_+	PRK03600, nrdI, class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA|731aa|up_4|CP031418.1_5246259_5248452_+	PRK08188, PRK08188, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|328aa|up_3|CP031418.1_5248517_5249501_-	TIGR03560, F420_Rv1855c, probable F420-dependent oxidoreductase, Rv1855c family	NA|205aa|up_2|CP031418.1_5249630_5250245_-	COG0262, FolA, Dihydrofolate reductase [Coenzyme metabolism]	NA|269aa|up_1|CP031418.1_5250435_5251242_-	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold	NA|76aa|up_0|CP031418.1_5251349_5251577_+	NA	NA|455aa|down_0|CP031418.1_5253829_5255194_+	COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]	NA|603aa|down_1|CP031418.1_5255278_5257087_-	COG2936, COG2936, Predicted acyl esterases [General function prediction only]	NA|391aa|down_2|CP031418.1_5257266_5258439_+	pfam03403, PAF-AH_p_II, Platelet-activating factor acetylhydrolase, isoform II	NA|321aa|down_3|CP031418.1_5258746_5259709_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|297aa|down_4|CP031418.1_5259760_5260651_-	cd03457, intradiol_dioxygenase_like, Intradiol dioxygenase supgroup	NA|356aa|down_5|CP031418.1_5260761_5261829_-	cd01146, FhuD, Fe3+-siderophore binding domain FhuD	NA|266aa|down_6|CP031418.1_5261874_5262672_-	cd07247, SgaA_N_like, N-terminal domain of Streptomyces griseus SgaA and similar domains	NA|582aa|down_7|CP031418.1_5262943_5264689_+	cd01662, Ubiquinol_Oxidase_I, Ubiquinol oxidase subunit I	NA|407aa|down_8|CP031418.1_5264767_5265988_+	cd07500, HAD_PSP, phosphoserine phosphatase (PSP), similar to Methanococcus Jannaschii PSP and Saccharomyces cerevisiae SER2p	NA|248aa|down_9|CP031418.1_5266137_5266881_+	pfam01981, PTH2, Peptidyl-tRNA hydrolase PTH2
GCA_003367415.1_ASM336741v1	CP031418	Nocardia farcinica strain W6977 chromosome, complete genome	19	5626072-5626497	8	CRT	no		csa3,WYL,cas4,DEDDh,cas3,DinG,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	CAGGTGTGGGCCCAGGTG	18	6	11	5626090-5626107|5626126-5626155|5626126-5626155|5626210-5626239|5626210-5626239|5626294-5626323|5626294-5626323|5626342-5626371|5626342-5626371|5626390-5626419|5626390-5626419	CP031418.1_5626066-5626083|CP031418.1_5626474-5626503|CP031418.1_5626498-5626527|CP031418.1_5626474-5626503|CP031418.1_5626498-5626527|CP031418.1_5626474-5626503|CP031418.1_5626498-5626527|CP031418.1_5626474-5626503|CP031418.1_5626498-5626527|CP031418.1_5626474-5626503|CP031418.1_5626498-5626527	NA	9	9	Orphan	csa3,WYL,cas4,DEDDh,cas3,DinG,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA|122aa|up_9|CP031418.1_5620165_5620531_+,NA|142aa|up_8|CP031418.1_5620988_5621414_+,NA|148aa|up_7|CP031418.1_5621413_5621857_+,NA|95aa|up_6|CP031418.1_5621912_5622197_+,NA|118aa|up_5|CP031418.1_5622247_5622601_+,NA|270aa|up_4|CP031418.1_5622707_5623517_+,NA|112aa|up_3|CP031418.1_5623727_5624063_+,NA|185aa|up_1|CP031418.1_5624793_5625348_+,NA|136aa|up_0|CP031418.1_5625415_5625823_+,NA|158aa|down_0|CP031418.1_5627180_5627654_+,NA|311aa|down_1|CP031418.1_5627653_5628586_+,NA|142aa|down_2|CP031418.1_5628746_5629172_+,NA|75aa|down_5|CP031418.1_5630043_5630268_+,NA|60aa|down_6|CP031418.1_5630587_5630767_-,NA|114aa|down_8|CP031418.1_5631317_5631659_+,NA|172aa|down_9|CP031418.1_5631627_5632143_+	NA|122aa|up_9|CP031418.1_5620165_5620531_+	NA	NA|142aa|up_8|CP031418.1_5620988_5621414_+	NA	NA|148aa|up_7|CP031418.1_5621413_5621857_+	NA	NA|95aa|up_6|CP031418.1_5621912_5622197_+	NA	NA|118aa|up_5|CP031418.1_5622247_5622601_+	NA	NA|270aa|up_4|CP031418.1_5622707_5623517_+	NA	NA|112aa|up_3|CP031418.1_5623727_5624063_+	NA	NA|218aa|up_2|CP031418.1_5624147_5624801_+	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family	NA|185aa|up_1|CP031418.1_5624793_5625348_+	NA	NA|136aa|up_0|CP031418.1_5625415_5625823_+	NA	NA|158aa|down_0|CP031418.1_5627180_5627654_+	NA	NA|311aa|down_1|CP031418.1_5627653_5628586_+	NA	NA|142aa|down_2|CP031418.1_5628746_5629172_+	NA	NA|104aa|down_3|CP031418.1_5629168_5629480_+	cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile	NA|85aa|down_4|CP031418.1_5629622_5629877_+	pfam14216, DUF4326, Domain of unknown function (DUF4326)	NA|75aa|down_5|CP031418.1_5630043_5630268_+	NA	NA|60aa|down_6|CP031418.1_5630587_5630767_-	NA	NA|92aa|down_7|CP031418.1_5630784_5631060_-	pfam08221, HTH_9, RNA polymerase III subunit RPC82 helix-turn-helix domain	NA|114aa|down_8|CP031418.1_5631317_5631659_+	NA	NA|172aa|down_9|CP031418.1_5631627_5632143_+	NA
GCA_003367415.1_ASM336741v1	CP031418	Nocardia farcinica strain W6977 chromosome, complete genome	21	5932229-5932332	20	CRISPRCasFinder	no	csa3,WYL	csa3,WYL,cas4,DEDDh,cas3,DinG,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Type I-A	CGGCAGGCCGTCCCGCTCAGGCGCAG	26	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas4,DEDDh,cas3,DinG,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA,NA	NA|687aa|up_9|CP031418.1_5922082_5924143_+	PRK12305, thrS, threonyl-tRNA synthetase; Reviewed	NA|191aa|up_8|CP031418.1_5924143_5924716_+	cd01275, FHIT, FHIT (fragile histidine family): FHIT proteins, related to the HIT family carry a motif HxHxH/Qxx (x, is a hydrophobic amino acid), On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified into three  branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases	NA|222aa|up_7|CP031418.1_5924716_5925382_+	COG0558, PgsA, Phosphatidylglycerophosphate synthase [Lipid metabolism]	NA|320aa|up_6|CP031418.1_5925407_5926367_+	PRK07920, PRK07920, lipid A biosynthesis lauroyl acyltransferase; Provisional	NA|375aa|up_5|CP031418.1_5926363_5927488_+	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|348aa|up_4|CP031418.1_5927487_5928531_+	cd04685, Nudix_Hydrolase_26, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|307aa|up_3|CP031418.1_5928928_5929849_+	PRK04180, PRK04180, pyridoxal 5'-phosphate synthase lyase subunit PdxS	NA|273aa|up_2|CP031418.1_5929899_5930718_+	COG1946, TesB, Acyl-CoA thioesterase [Lipid metabolism]	NA|232aa|up_1|CP031418.1_5930765_5931461_+	PRK13525, PRK13525, pyridoxal 5'-phosphate synthase glutaminase subunit PdxT	NA|251aa|up_0|CP031418.1_5931474_5932227_+	PRK00110, PRK00110, YebC/PmpR family DNA-binding transcriptional regulator	NA|169aa|down_0|CP031418.1_5932385_5932892_-	cd08899, SRPBCC_CalC_Aha1-like_6, Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins	csa3|121aa|down_1|CP031418.1_5932888_5933251_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|168aa|down_2|CP031418.1_5933320_5933824_+	PRK00431, PRK00431, ADP-ribose-binding protein	NA|150aa|down_3|CP031418.1_5933820_5934270_-	cd07247, SgaA_N_like, N-terminal domain of Streptomyces griseus SgaA and similar domains	WYL|323aa|down_4|CP031418.1_5934364_5935333_+	COG2378, COG2378, Predicted transcriptional regulator [Transcription]	NA|187aa|down_5|CP031418.1_5935419_5935980_+	PRK00039, ruvC, Holliday junction resolvase; Reviewed	NA|202aa|down_6|CP031418.1_5935976_5936582_+	PRK00116, ruvA, Holliday junction branch migration protein RuvA	NA|358aa|down_7|CP031418.1_5936588_5937662_+	PRK00080, ruvB, Holliday junction branch migration DNA helicase RuvB	NA|166aa|down_8|CP031418.1_5937727_5938225_+	pfam04138, GtrA, GtrA-like protein	NA|188aa|down_9|CP031418.1_5938230_5938794_-	TIGR03543, divI1A_rptt_fam, DivIVA domain repeat protein
