The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP031113	Bordetella pertussis strain UK39 chromosome, complete genome	4108152	0	70032	4108152	protease,tRNA,transposase	Natrialba_phage(12.5%)	59	NA	NA
AXK08022.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
AXK08023.1|1916_2609_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA	NA
AXK08024.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
AXK08025.1|3409_4171_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AXK08026.1|4214_5132_+	ParB/RepB/Spo0J family partition protein	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
AXK08027.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
AXK08028.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
AXK08029.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
AXK08030.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
AXK08031.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
AXK08032.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
AXK08033.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
AXK08034.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
AXK08035.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
AXK11385.1|20126_20531_-	lipoprotein	NA	NA	NA	NA	NA
AXK08036.1|20771_21947_+	hypothetical protein	NA	NA	NA	NA	NA
AXK08037.1|24352_25459_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA	NA
AXK08038.1|26470_27286_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AXK08039.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK08040.1|28313_28649_-	CoA transferase	NA	NA	NA	NA	NA
AXK08041.1|28673_29108_-	hypothetical protein	NA	NA	NA	NA	NA
AXK08042.1|29140_30367_-	thiolase family protein	NA	NA	NA	NA	NA
AXK08043.1|30363_30861_-	dehydratase	NA	NA	NA	NA	NA
AXK11386.1|31068_31977_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXK08044.1|32162_33005_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AXK08045.1|33047_34469_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AXK08046.1|34624_35575_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK08047.1|35571_36762_-	MFS transporter	NA	NA	NA	NA	NA
AXK08048.1|36948_37923_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
AXK08049.1|37924_40063_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AXK08050.1|40059_40599_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
AXK08051.1|40602_41331_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AXK08052.1|41317_42211_+	M48 family peptidase	NA	NA	NA	NA	NA
AXK08053.1|42281_42677_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
AXK08054.1|42686_43217_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
AXK08055.1|43661_44612_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK08056.1|45111_45747_+	hypothetical protein	NA	NA	NA	NA	NA
AXK08057.1|45718_45955_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AXK08058.1|46082_46976_+	AEC family transporter	NA	NA	NA	NA	NA
AXK08059.1|48145_49393_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
AXK08060.1|49389_50004_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
AXK08061.1|50139_51090_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK08062.1|51132_52389_+	muropeptide transporter	NA	NA	NA	NA	NA
AXK08063.1|53620_54355_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
AXK08064.1|54360_54951_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
AXK08065.1|54975_55665_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
AXK08066.1|55661_56423_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AXK08067.1|56502_57402_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK08068.1|57495_58446_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK08069.1|59245_60472_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
AXK08070.1|60471_60891_-	transcriptional regulator	NA	NA	NA	NA	NA
AXK08071.1|61074_62016_-	hypothetical protein	NA	NA	NA	NA	NA
AXK08072.1|62439_63276_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK08073.1|63470_64052_-|protease	protease	protease	NA	NA	NA	NA
AXK08074.1|64064_64382_-	ferredoxin	NA	NA	NA	NA	NA
AXK08075.1|64485_65544_-	oxidoreductase	NA	NA	NA	NA	NA
AXK08076.1|65578_66850_-	TRAP transporter large permease	NA	NA	NA	NA	NA
AXK08077.1|67479_68661_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK08078.1|69081_70032_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
CP031113	Bordetella pertussis strain UK39 chromosome, complete genome	4108152	77630	136102	4108152	tRNA,transposase	Planktothrix_phage(22.22%)	54	NA	NA
AXK08085.1|77630_78581_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK11388.1|78654_79599_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AXK08086.1|79595_81470_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
AXK08087.1|82817_83522_-	DUF2837 family protein	NA	NA	NA	NA	NA
AXK08088.1|83518_84625_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
AXK08089.1|84886_85480_-	sugar transferase	NA	NA	NA	NA	NA
AXK08090.1|85476_86709_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
AXK08091.1|86726_87986_-	glycosyltransferase WbuB	NA	NA	NA	NA	NA
AXK08092.1|88009_89098_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
AXK08093.1|89105_90206_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
AXK08094.1|90209_90785_-	N-acetyltransferase	NA	NA	NA	NA	NA
AXK08095.1|90788_91841_-	gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
AXK11389.1|91971_92979_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
AXK08096.1|92980_94267_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
AXK08097.1|94283_94439_-	hypothetical protein	NA	NA	NA	NA	NA
AXK08098.1|94463_95267_-	type III pantothenate kinase	NA	NA	NA	NA	NA
AXK08099.1|95263_96130_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
AXK08100.1|96198_97335_+	ABC transporter permease	NA	NA	NA	NA	NA
AXK08101.1|97334_98174_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
AXK08102.1|99106_99709_+	hypothetical protein	NA	NA	NA	NA	NA
AXK08103.1|99738_100392_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AXK08104.1|100524_101781_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
AXK08105.1|101783_102728_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
AXK08106.1|102803_103079_+	DUF493 family protein	NA	NA	NA	NA	NA
AXK08107.1|103086_103749_+	octanoyltransferase	NA	NA	NA	NA	NA
AXK08108.1|103810_104812_+	lipoyl synthase	NA	NA	NA	NA	NA
AXK08109.1|104826_105375_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
AXK08110.1|105432_106329_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
AXK08111.1|106325_107387_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
AXK08112.1|107422_108373_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AXK08113.1|109271_110465_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
AXK08114.1|110546_111176_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
AXK08115.1|111237_111921_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
AXK08116.1|111930_113613_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
AXK11390.1|113900_114248_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
AXK08117.1|114338_114656_+	hypothetical protein	NA	NA	NA	NA	NA
AXK11391.1|114938_115955_+|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AXK08118.1|116030_116831_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AXK08119.1|116827_117703_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
AXK08120.1|117713_119006_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK08121.1|119048_120089_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
AXK08122.1|120194_121016_-	phosphodiesterase	NA	NA	NA	NA	NA
AXK08123.1|121116_122067_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK08124.1|122165_123071_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
AXK08125.1|123067_123901_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
AXK11392.1|124737_125748_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
AXK11393.1|125744_126134_-	hypothetical protein	NA	NA	NA	NA	NA
AXK11394.1|127027_128281_+	amidase	NA	NA	NA	NA	NA
AXK08126.1|128371_130072_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
AXK08127.1|130498_131146_-	hypothetical protein	NA	NA	NA	NA	NA
AXK11395.1|131144_132584_+	RNA polymerase sigma-54 factor	NA	NA	NA	NA	NA
AXK08128.1|132676_132979_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
AXK08129.1|133006_133885_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXK08130.1|135151_136102_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
CP031113	Bordetella pertussis strain UK39 chromosome, complete genome	4108152	164877	225386	4108152	protease,tRNA,transposase	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
AXK08151.1|164877_165828_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK08152.1|167271_168174_-	YgcG family protein	NA	NA	NA	NA	NA
AXK08153.1|168151_168781_-	LemA family protein	NA	NA	NA	NA	NA
AXK08154.1|169111_170494_+	RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.5	5.3e-42
AXK08155.1|170527_171157_+	threonine transporter RhtB	NA	NA	NA	NA	NA
AXK08156.1|171205_172813_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
AXK08157.1|172837_173521_+	hypothetical protein	NA	NA	NA	NA	NA
AXK11398.1|173602_174079_-	bacterioferritin	NA	NA	NA	NA	NA
AXK08158.1|174285_175236_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK08159.1|176351_176879_+	META domain-containing protein	NA	NA	NA	NA	NA
AXK08160.1|176970_177786_+	META domain-containing protein	NA	NA	NA	NA	NA
AXK08161.1|177846_178581_+	sulfurtransferase	NA	NA	NA	NA	NA
AXK08162.1|178618_180697_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
AXK08163.1|180946_181219_-	hypothetical protein	NA	NA	NA	NA	NA
AXK08164.1|181317_182406_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
AXK08165.1|182409_184314_+	outer membrane protein assembly factor	NA	NA	NA	NA	NA
AXK08166.1|184310_187985_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
AXK08167.1|188045_188609_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
AXK08168.1|188616_189039_-	glyoxalase	NA	NA	NA	NA	NA
AXK08169.1|189066_189486_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
AXK11399.1|189514_189961_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
AXK08170.1|190087_190585_+	hypothetical protein	NA	NA	NA	NA	NA
AXK08171.1|190739_193010_+	lysine decarboxylase	NA	NA	NA	NA	NA
AXK08172.1|193058_194291_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AXK08173.1|194388_195339_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK08174.1|195384_196077_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.4e-83
AXK08175.1|196073_196967_+	ZIP family metal transporter	NA	NA	NA	NA	NA
AXK08176.1|197361_198462_+	aminomethyltransferase	NA	NA	NA	NA	NA
AXK08177.1|198543_198918_+	glycine cleavage system protein H	NA	NA	NA	NA	NA
AXK08178.1|198977_201842_+	glycine dehydrogenase (aminomethyl-transferring)	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
AXK08179.1|201986_202727_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AXK08180.1|202796_204008_+	CoA transferase	NA	NA	NA	NA	NA
AXK08181.1|204036_205005_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK08182.1|205617_206568_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK08183.1|206724_207048_+	PsiF repeat family protein	NA	NA	NA	NA	NA
AXK08184.1|207152_208202_-	cyclase family protein	NA	NA	NA	NA	NA
AXK08185.1|208198_209023_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
AXK08186.1|209023_209320_-	YciI family protein	NA	NA	NA	NA	NA
AXK08187.1|209345_209621_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
AXK08188.1|209677_210322_-	CoA transferase subunit B	NA	NA	NA	NA	NA
AXK08189.1|210321_211008_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
AXK11400.1|211137_211989_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AXK08190.1|212039_212765_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
AXK08191.1|212796_214146_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
AXK08192.1|214257_215190_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
AXK08193.1|215647_218443_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
AXK08194.1|219036_221979_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
AXK08195.1|222050_222770_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
AXK08196.1|222808_223357_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
AXK08197.1|223511_224411_+	virginiamycin B lyase	NA	NA	NA	NA	NA
AXK08198.1|224435_225386_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
CP031113	Bordetella pertussis strain UK39 chromosome, complete genome	4108152	233317	301468	4108152	protease,tRNA,transposase	Bacillus_phage(20.0%)	56	NA	NA
AXK08206.1|233317_234268_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK08207.1|234354_235305_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AXK08208.1|235301_236252_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK08209.1|236349_237147_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
AXK08210.1|238096_238507_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
AXK08211.1|239528_240272_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AXK08212.1|240315_241359_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK08213.1|241529_243632_+	hypothetical protein	NA	NA	NA	NA	NA
AXK08214.1|245042_245999_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK08215.1|246017_246509_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
AXK08216.1|246505_247861_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
AXK08217.1|247861_248560_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
AXK08218.1|248556_249258_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
AXK08219.1|249510_250560_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
AXK08220.1|250665_251607_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
AXK08221.1|251603_253493_-	DNA mismatch repair protein MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
AXK08222.1|253579_254218_+	hypothetical protein	NA	NA	NA	NA	NA
AXK11401.1|254360_255605_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.1e-17
AXK08223.1|255676_256213_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
AXK08224.1|256364_257756_+	class II fumarate hydratase	NA	NA	NA	NA	NA
AXK08225.1|257772_258753_-	AEC family transporter	NA	NA	NA	NA	NA
AXK08226.1|258888_259872_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
AXK08227.1|259936_260836_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXK08228.1|260942_262697_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AXK08229.1|262704_263829_-	CoA transferase	NA	NA	NA	NA	NA
AXK08230.1|263842_264823_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK08231.1|267063_267609_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
AXK08232.1|267692_269312_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AXK08233.1|269327_270482_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
AXK08234.1|270495_270621_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
AXK08235.1|270617_272369_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
AXK08236.1|272365_274045_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
AXK08237.1|274080_274656_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.4e-28
AXK08238.1|278334_278496_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
AXK08239.1|278503_278644_+	hypothetical protein	NA	NA	NA	NA	NA
AXK08240.1|279162_279612_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
AXK08241.1|279621_280233_-	glutathione S-transferase	NA	NA	NA	NA	NA
AXK08242.1|280391_281246_-	cytochrome c1	NA	NA	NA	NA	NA
AXK08243.1|281265_282648_-	cytochrome b	NA	NA	NA	NA	NA
AXK08244.1|282712_283354_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
AXK08245.1|283493_283952_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
AXK08246.1|283976_284753_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
AXK11402.1|284806_285943_+	PDZ domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
AXK08247.1|285939_286890_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK08248.1|286987_287614_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
AXK08249.1|287636_288563_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
AXK08250.1|288571_290158_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK08251.1|290154_291159_-	alpha/beta hydrolase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
AXK08252.1|291358_292219_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AXK08253.1|292250_293252_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
AXK08254.1|293322_294132_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AXK08255.1|294209_296069_+	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
AXK08256.1|296197_297400_-	MFS transporter	NA	NA	NA	NA	NA
AXK08257.1|297513_298395_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXK08258.1|299897_300458_-	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
AXK08259.1|300517_301468_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
CP031113	Bordetella pertussis strain UK39 chromosome, complete genome	4108152	555258	614556	4108152	tRNA,transposase	Acinetobacter_phage(27.27%)	48	NA	NA
AXK08469.1|555258_556209_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK08470.1|557532_558309_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AXK08471.1|558343_560116_+	M61 family peptidase	NA	NA	NA	NA	NA
AXK08472.1|560117_561020_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
AXK08473.1|561144_561504_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
AXK08474.1|561535_562498_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
AXK08475.1|562595_563546_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK08476.1|563558_564494_-	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
AXK08477.1|564553_565393_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
AXK08478.1|565389_566559_-	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
AXK08479.1|566555_567845_-	hypothetical protein	NA	NA	NA	NA	NA
AXK08480.1|567887_568262_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
AXK08481.1|568367_569105_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
AXK08482.1|569112_569817_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AXK08483.1|570080_571601_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
AXK08484.1|571656_572220_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
AXK08485.1|572238_573270_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
AXK08486.1|573266_574055_+	indole-3-glycerol-phosphate synthase	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
AXK08487.1|574230_575220_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK08488.1|576975_577926_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK08489.1|579148_580051_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXK08490.1|580052_580907_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
AXK08491.1|580953_582063_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AXK08492.1|582073_582592_-	flavin reductase	NA	NA	NA	NA	NA
AXK08493.1|582621_583254_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
AXK08494.1|583325_583985_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
AXK08495.1|583981_585202_-	MFS transporter	NA	NA	NA	NA	NA
AXK08496.1|585470_586343_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
AXK08497.1|586498_587236_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AXK08498.1|587238_588834_-	acyl-CoA synthetase	NA	NA	NA	NA	NA
AXK11423.1|588965_589955_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK08499.1|589951_590662_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
AXK11424.1|590757_591774_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AXK08500.1|592045_592672_-	aminotransferase	NA	NA	NA	NA	NA
AXK08501.1|592727_593855_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
AXK08502.1|593860_599578_-	excinuclease ABC subunit A	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
AXK08503.1|599861_600077_+	hypothetical protein	NA	NA	NA	NA	NA
AXK08504.1|600145_601090_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
AXK08505.1|601278_602214_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
AXK08506.1|602331_603903_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK08507.1|603982_605191_+	ABC transporter permease	NA	NA	NA	NA	NA
AXK08508.1|605688_606606_+	DMT family transporter	NA	NA	NA	NA	NA
AXK08509.1|608966_609188_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
AXK11425.1|609518_610535_+|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AXK08510.1|610619_610871_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
AXK08511.1|610874_611690_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
AXK08512.1|611802_612681_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
AXK08513.1|612792_614556_-|tRNA	glutamine--tRNA ligase	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
>prophage 7
CP031113	Bordetella pertussis strain UK39 chromosome, complete genome	4108152	620710	674449	4108152	transposase	Salmonella_phage(33.33%)	47	NA	NA
AXK08517.1|620710_621661_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK08518.1|621729_622728_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK08519.1|622732_623413_-	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
AXK08520.1|623550_623943_+	OsmC family peroxiredoxin	NA	NA	NA	NA	NA
AXK11426.1|624050_625067_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AXK08521.1|625306_626092_-	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
AXK08522.1|626186_627596_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA	NA
AXK08523.1|627606_628407_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
AXK08524.1|628427_629198_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AXK08525.1|629240_629708_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
AXK08526.1|629704_630655_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK08527.1|632603_633482_-	fatty acid desaturase	NA	NA	NA	NA	NA
AXK08528.1|634408_637387_-	hypothetical protein	NA	NA	NA	NA	NA
AXK08529.1|637739_638690_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK08530.1|638686_639775_-	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA	NA
AXK08531.1|639810_640674_-	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
AXK08532.1|641813_642203_-	DNA-binding protein	NA	NA	NA	NA	NA
AXK08533.1|642206_642989_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AXK08534.1|643022_643775_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AXK08535.1|644083_645223_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK08536.1|645219_646011_+	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
AXK08537.1|646007_646757_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
AXK08538.1|646753_647626_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AXK08539.1|647625_648627_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AXK08540.1|648623_649787_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AXK08541.1|649812_650496_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AXK08542.1|650449_651784_+	phenylacetate--CoA ligase family protein	NA	NA	NA	NA	NA
AXK08543.1|651776_652871_+	CoA transferase	NA	NA	NA	NA	NA
AXK11427.1|653636_654587_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK08544.1|656527_657787_+	YeaH/YhbH family protein	NA	NA	NA	NA	NA
AXK08545.1|657783_659322_+	SpoVR family protein	NA	NA	NA	NA	NA
AXK08546.1|659318_660515_-	MFS transporter	NA	NA	NA	NA	NA
AXK08547.1|660511_661903_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AXK08548.1|661899_662916_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK08549.1|662984_664220_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AXK08550.1|664320_665115_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AXK08551.1|665484_665892_+	GFA family protein	NA	NA	NA	NA	NA
AXK08552.1|666309_666582_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
AXK08553.1|667163_668018_+	urease accessory protein UreD	NA	NA	NA	NA	NA
AXK08554.1|668118_668421_+	urease subunit gamma	NA	NA	NA	NA	NA
AXK08555.1|668447_669083_+	urease accessory protein UreJ	NA	NA	NA	NA	NA
AXK08556.1|669099_669408_+	urease subunit beta	NA	NA	NA	NA	NA
AXK08557.1|669404_671120_+	urease subunit alpha	NA	NA	NA	NA	NA
AXK08558.1|671122_671740_+	urease accessory protein UreE	NA	NA	NA	NA	NA
AXK08559.1|671840_672425_+	urease accessory protein UreF	NA	NA	NA	NA	NA
AXK08560.1|672449_673094_+	urease accessory protein UreG	NA	NA	NA	NA	NA
AXK08561.1|673498_674449_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
CP031113	Bordetella pertussis strain UK39 chromosome, complete genome	4108152	723336	763333	4108152	integrase,transposase,tRNA,protease	Pseudomonas_phage(33.33%)	29	720635:720653	740522:740540
720635:720653	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
AXK08598.1|723336_723984_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
AXK08599.1|723980_724763_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AXK08600.1|724835_725927_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
AXK08601.1|726206_727334_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
AXK08602.1|727675_728722_+	Fic family protein	NA	NA	NA	NA	NA
AXK11430.1|728732_728873_+	DEAD/DEAH box helicase	NA	NA	NA	NA	NA
AXK08603.1|728869_731989_+	restriction endonuclease	NA	NA	NA	NA	NA
AXK08604.1|731990_734942_+	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
AXK08605.1|734957_736169_+	chromosome segregation protein SMC	NA	NA	NA	NA	NA
AXK08606.1|736351_737302_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK08607.1|737318_737813_+	DUF4276 family protein	NA	NA	NA	NA	NA
AXK08608.1|737816_738074_+	hypothetical protein	NA	NA	NA	NA	NA
AXK08609.1|738098_739529_+	ATP-dependent helicase	NA	NA	NA	NA	NA
AXK08610.1|739610_739895_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
AXK08611.1|740678_741629_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
740522:740540	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
AXK08612.1|742047_744612_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AXK08613.1|744656_746510_-	hypothetical protein	NA	NA	NA	NA	NA
AXK08614.1|746842_748414_+	winged helix family transcriptional regulator	NA	NA	NA	NA	NA
AXK08615.1|749854_750805_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK08616.1|750890_751631_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AXK08617.1|751857_752805_-	hypothetical protein	NA	NA	NA	NA	NA
AXK08618.1|754192_755143_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK08619.1|755335_756151_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AXK08620.1|756283_757723_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AXK08621.1|757736_758078_+	cupin domain-containing protein	NA	NA	NA	NA	NA
AXK08622.1|758132_759788_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
AXK08623.1|759939_760950_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK08624.1|761082_761856_+	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK08625.1|762382_763333_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
CP031113	Bordetella pertussis strain UK39 chromosome, complete genome	4108152	773260	821921	4108152	holin,protease,transposase	Bovine_alphaherpesvirus(10.0%)	47	NA	NA
AXK08633.1|773260_774211_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK08634.1|774348_775101_+	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
AXK08635.1|775339_777064_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	9.5e-49
AXK08636.1|777083_778343_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AXK08637.1|778357_779452_-	CCA-adding enzyme	NA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
AXK08638.1|779448_781575_-	lytic transglycosylase domain-containing protein	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.5e-14
AXK08639.1|781587_782268_+	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
AXK11434.1|782545_783919_+	MFS transporter	NA	NA	NA	NA	NA
AXK08640.1|783920_784940_+	histone deacetylase family protein	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
AXK08641.1|785003_785975_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXK08642.1|786039_786990_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK08643.1|787087_787930_-	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
AXK08644.1|787929_788265_-|holin	phage holin family protein	holin	NA	NA	NA	NA
AXK08645.1|788335_789754_-	adenosylhomocysteinase	NA	S4VPF6	Pandoravirus	29.4	8.7e-40
AXK08646.1|790033_791074_-	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
AXK08647.1|791153_791405_-	DUF1289 domain-containing protein	NA	NA	NA	NA	NA
AXK08648.1|791515_792814_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	60.9	1.6e-125
AXK08649.1|792962_793817_+	lysophospholipid acyltransferase family protein	NA	NA	NA	NA	NA
AXK08650.1|793813_794704_+	acyltransferase	NA	NA	NA	NA	NA
AXK08651.1|794746_795658_+	diaminopimelate epimerase	NA	NA	NA	NA	NA
AXK08652.1|795684_796377_+	DUF484 family protein	NA	NA	NA	NA	NA
AXK08653.1|796391_797372_+	tyrosine recombinase XerC	NA	A0A166YH27	Gordonia_phage	30.5	3.3e-14
AXK08654.1|797384_799526_-	TonB-dependent receptor	NA	NA	NA	NA	NA
AXK08655.1|799574_800543_-	nickel transporter	NA	NA	NA	NA	NA
AXK11435.1|800533_801157_-	DUF1007 family protein	NA	NA	NA	NA	NA
AXK08656.1|801162_802098_-	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK08657.1|802094_802991_-	metal ABC transporter permease	NA	NA	NA	NA	NA
AXK08658.1|802987_803710_-	metal ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	30.0	1.1e-11
AXK08659.1|803700_803901_-	hypothetical protein	NA	NA	NA	NA	NA
AXK08660.1|804038_804542_+	transcriptional repressor	NA	NA	NA	NA	NA
AXK08661.1|804818_805934_+	GTP-binding protein	NA	NA	NA	NA	NA
AXK08662.1|806076_806541_+	RNA polymerase-binding protein DksA	NA	NA	NA	NA	NA
AXK08663.1|806688_807228_+|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
AXK08664.1|807249_808584_+	HslU--HslV peptidase ATPase subunit	NA	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
AXK11436.1|808597_808903_-	RND transporter	NA	NA	NA	NA	NA
AXK08665.1|809327_809909_+	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA	NA
AXK08666.1|809989_810940_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK08667.1|811037_811988_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK08668.1|812085_813036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK08669.1|813476_814382_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AXK08670.1|814437_816045_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
AXK08671.1|816298_817804_-	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
AXK08672.1|817818_818283_-	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
AXK08673.1|818572_819523_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK08674.1|819684_820215_+	hypothetical protein	NA	NA	NA	NA	NA
AXK08675.1|820214_820526_+	cell division protein ZapA	NA	NA	NA	NA	NA
AXK08676.1|820970_821921_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
CP031113	Bordetella pertussis strain UK39 chromosome, complete genome	4108152	1006130	1108251	4108152	transposase	Bacillus_virus(25.0%)	92	NA	NA
AXK08816.1|1006130_1007081_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK08817.1|1007183_1007846_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AXK08818.1|1007948_1008359_-	hypothetical protein	NA	NA	NA	NA	NA
AXK08819.1|1008463_1009465_+	amidase	NA	NA	NA	NA	NA
AXK08820.1|1009467_1010664_+	CoA transferase	NA	NA	NA	NA	NA
AXK08821.1|1010684_1011488_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AXK08822.1|1011568_1011865_+	histidine kinase	NA	NA	NA	NA	NA
AXK08823.1|1011895_1012459_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK11449.1|1012499_1013357_+	ABC transporter permease	NA	NA	NA	NA	NA
AXK08824.1|1013364_1014114_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
AXK08825.1|1014135_1015008_+	hypothetical protein	NA	NA	NA	NA	NA
AXK08826.1|1015036_1015816_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AXK08827.1|1015849_1016647_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AXK08828.1|1018098_1019271_+	hypothetical protein	NA	A0A2H4PQU7	Staphylococcus_phage	39.6	1.1e-59
AXK08829.1|1019301_1019694_+	RidA family protein	NA	NA	NA	NA	NA
AXK08830.1|1019687_1020548_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AXK08831.1|1020551_1021514_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AXK11450.1|1022290_1022980_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
AXK08832.1|1023840_1024791_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK08833.1|1025139_1026009_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXK08834.1|1026079_1026775_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
AXK08835.1|1026764_1027274_+	nucleoside deaminase	NA	NA	NA	NA	NA
AXK08836.1|1027270_1028491_+	MFS transporter	NA	NA	NA	NA	NA
AXK08837.1|1028438_1029341_-	transcriptional regulator GcvA	NA	NA	NA	NA	NA
AXK08838.1|1030226_1031513_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AXK08839.1|1031551_1032925_+	amidase	NA	NA	NA	NA	NA
AXK08840.1|1032963_1033665_-	riboflavin synthase	NA	NA	NA	NA	NA
AXK08841.1|1033963_1034953_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK08842.1|1035053_1035515_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AXK08843.1|1035530_1036079_-	cysteine dioxygenase	NA	NA	NA	NA	NA
AXK08844.1|1036220_1037696_-	long-chain fatty acid--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
AXK08845.1|1037801_1038893_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
AXK08846.1|1038896_1039679_-	ABC transporter permease	NA	NA	NA	NA	NA
AXK08847.1|1039688_1040477_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
AXK08848.1|1041602_1042037_-	PaaI family thioesterase	NA	NA	NA	NA	NA
AXK08849.1|1042033_1043044_-	alcohol dehydrogenase	NA	NA	NA	NA	NA
AXK08850.1|1043087_1044014_-	VOC family protein	NA	NA	NA	NA	NA
AXK08851.1|1044300_1044669_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
AXK11451.1|1044884_1045835_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK11452.1|1045816_1048306_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.3e-86
AXK08852.1|1048354_1049047_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
AXK08853.1|1049119_1050319_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
AXK08854.1|1050336_1051242_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXK08855.1|1051357_1052287_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AXK11453.1|1052312_1053659_+	MFS transporter	NA	NA	NA	NA	NA
AXK11454.1|1053686_1054436_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
AXK08856.1|1054449_1055232_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
AXK08857.1|1055424_1056375_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK08858.1|1056436_1057582_-	porin	NA	NA	NA	NA	NA
AXK08859.1|1058058_1058895_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
AXK08860.1|1058964_1059930_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXK08861.1|1059926_1060877_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK08862.1|1061261_1061804_+	hypothetical protein	NA	NA	NA	NA	NA
AXK08863.1|1062839_1063790_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK08864.1|1064031_1064400_+	hypothetical protein	NA	NA	NA	NA	NA
AXK08865.1|1064445_1065570_+	hypothetical protein	NA	NA	NA	NA	NA
AXK11455.1|1066704_1067445_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
AXK08866.1|1067548_1068169_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AXK08867.1|1068271_1069222_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AXK08868.1|1069218_1071327_-	AsmA family protein	NA	NA	NA	NA	NA
AXK08869.1|1071471_1072131_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
AXK11456.1|1072162_1072627_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
AXK08870.1|1072902_1073088_+	hypothetical protein	NA	NA	NA	NA	NA
AXK08871.1|1073139_1073892_-	DNA-binding protein	NA	NA	NA	NA	NA
AXK08872.1|1073898_1075161_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
AXK08873.1|1075202_1076441_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AXK08874.1|1077517_1078645_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
AXK08875.1|1078655_1079483_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AXK08876.1|1079469_1080336_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
AXK08877.1|1081702_1082107_-	hypothetical protein	NA	NA	NA	NA	NA
AXK08878.1|1082198_1083149_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK11457.1|1083517_1084429_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK08879.1|1084443_1085154_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AXK08880.1|1085150_1086395_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
AXK08881.1|1086396_1086831_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
AXK08882.1|1086859_1087165_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AXK08883.1|1087262_1088213_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK08884.1|1088269_1089418_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
AXK08885.1|1089498_1090449_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK08886.1|1090979_1091777_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK08887.1|1091824_1092478_-	ABC transporter permease	NA	NA	NA	NA	NA
AXK08888.1|1092434_1093523_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
AXK08889.1|1093687_1095913_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
AXK08890.1|1098190_1099087_+	inositol monophosphatase	NA	NA	NA	NA	NA
AXK08891.1|1099206_1100157_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK08892.1|1100153_1101845_-	long-chain fatty acid--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	28.1	9.4e-33
AXK08893.1|1101906_1103103_+	amidohydrolase	NA	NA	NA	NA	NA
AXK08894.1|1103116_1103995_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXK08895.1|1104101_1105148_+	YeiH family putative sulfate export transporter	NA	NA	NA	NA	NA
AXK08896.1|1105211_1105622_+	acyl-CoA thioesterase	NA	NA	NA	NA	NA
AXK08897.1|1105632_1107105_+	magnesium transporter	NA	NA	NA	NA	NA
AXK08898.1|1107300_1108251_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
CP031113	Bordetella pertussis strain UK39 chromosome, complete genome	4108152	1130542	1201508	4108152	protease,transposase	uncultured_Mediterranean_phage(25.0%)	52	NA	NA
AXK08921.1|1130542_1131493_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK08922.1|1131549_1132662_+	Ldh family oxidoreductase	NA	NA	NA	NA	NA
AXK08923.1|1135045_1135996_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK08924.1|1136585_1137362_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
AXK08925.1|1137479_1137743_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
AXK08926.1|1137843_1138848_-	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
AXK08927.1|1139048_1140650_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
AXK08928.1|1140675_1141434_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AXK08929.1|1141525_1142182_-	adenylate kinase	NA	NA	NA	NA	NA
AXK08930.1|1142272_1143037_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
AXK08931.1|1143046_1143235_-	Trm112 family protein	NA	NA	NA	NA	NA
AXK08932.1|1143290_1144334_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
AXK08933.1|1144330_1144744_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
AXK08934.1|1144740_1145361_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
AXK08935.1|1145640_1146591_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK08936.1|1146758_1148150_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
AXK08937.1|1148222_1148801_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
AXK08938.1|1148917_1150315_+	chloride channel protein EriC	NA	NA	NA	NA	NA
AXK08939.1|1150430_1151636_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
AXK08940.1|1151735_1152254_-	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
AXK08941.1|1152348_1152594_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
AXK08942.1|1152821_1153136_+|protease	ATP-dependent Clp protease adaptor ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
AXK08943.1|1153225_1158415_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
AXK11459.1|1158411_1160580_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
AXK08944.1|1160599_1162951_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.2e-164
AXK08945.1|1162955_1164275_+	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
AXK08946.1|1164293_1165967_+	MCE family protein	NA	NA	NA	NA	NA
AXK08947.1|1165971_1166640_+	lipoprotein	NA	NA	NA	NA	NA
AXK08948.1|1166796_1170618_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AXK08949.1|1170948_1171899_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK08950.1|1171920_1173066_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK08951.1|1173214_1174144_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AXK08952.1|1174140_1175229_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AXK08953.1|1175225_1176029_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
AXK08954.1|1176025_1176757_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
AXK08955.1|1176814_1178104_-	MFS transporter	NA	NA	NA	NA	NA
AXK08956.1|1178200_1178803_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AXK08957.1|1183356_1183695_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
AXK08958.1|1184363_1184669_+	hypothetical protein	NA	NA	NA	NA	NA
AXK08959.1|1186374_1187325_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK08960.1|1187321_1188653_-	MFS transporter	NA	NA	NA	NA	NA
AXK08961.1|1189892_1191914_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AXK08962.1|1191906_1192548_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
AXK08963.1|1192544_1192952_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
AXK08964.1|1192948_1193749_+	SURF1 family protein	NA	NA	NA	NA	NA
AXK08965.1|1193823_1194528_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
AXK08966.1|1194559_1195354_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
AXK08967.1|1195350_1196301_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK08968.1|1196398_1197349_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AXK08969.1|1197446_1197881_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
AXK08970.1|1197963_1200300_+	copper-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
AXK11460.1|1200491_1201508_+|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
>prophage 12
CP031113	Bordetella pertussis strain UK39 chromosome, complete genome	4108152	1248900	1329770	4108152	tRNA,transposase	Bacillus_virus(25.0%)	59	NA	NA
AXK09009.1|1248900_1249851_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AXK09010.1|1249847_1250798_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK09011.1|1251057_1252086_-	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AXK09012.1|1252165_1253464_-	TRAP transporter large permease	NA	NA	NA	NA	NA
AXK09013.1|1253460_1254042_-	TRAP transporter small permease	NA	NA	NA	NA	NA
AXK09014.1|1254354_1258401_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
AXK09015.1|1258641_1266303_+	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
AXK09016.1|1266299_1267250_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK09017.1|1268388_1268862_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AXK09018.1|1269001_1269622_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AXK09019.1|1269757_1270558_+	aldolase	NA	NA	NA	NA	NA
AXK09020.1|1270612_1271704_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK09021.1|1271725_1272169_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
AXK09022.1|1272197_1272830_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
AXK09023.1|1272940_1273357_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
AXK09024.1|1273349_1274042_+	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
AXK09025.1|1274148_1274523_+	hypothetical protein	NA	NA	NA	NA	NA
AXK09026.1|1274599_1275409_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AXK09027.1|1275504_1276449_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
AXK09028.1|1276487_1277459_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK09029.1|1277549_1277987_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
AXK09030.1|1278045_1278927_-	NRDE family protein	NA	NA	NA	NA	NA
AXK09031.1|1279930_1280791_+	amidohydrolase	NA	NA	NA	NA	NA
AXK09032.1|1280823_1282206_+	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
AXK11465.1|1282202_1283222_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK09033.1|1283594_1284089_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
AXK09034.1|1284096_1284837_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AXK09035.1|1284917_1286522_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
AXK09036.1|1286561_1287371_-	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	1.6e-22
AXK09037.1|1287475_1289641_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	1.9e-14
AXK09038.1|1290521_1291334_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AXK09039.1|1291346_1291655_+	hypothetical protein	NA	NA	NA	NA	NA
AXK09040.1|1291772_1293503_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK09041.1|1293504_1294650_-	hypothetical protein	NA	NA	NA	NA	NA
AXK09042.1|1294779_1295448_-	DUF502 domain-containing protein	NA	NA	NA	NA	NA
AXK09043.1|1295569_1296037_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AXK09044.1|1296172_1297555_+	D-amino acid dehydrogenase small subunit	NA	NA	NA	NA	NA
AXK09045.1|1297551_1298676_+	DNA repair exonuclease	NA	NA	NA	NA	NA
AXK09046.1|1298672_1301309_+	GTP-binding protein	NA	NA	NA	NA	NA
AXK09047.1|1301723_1302674_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK09048.1|1306420_1307032_-	DUF2239 family protein	NA	NA	NA	NA	NA
AXK09049.1|1307254_1308715_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
AXK09050.1|1308811_1310404_+	GMP synthase (glutamine-hydrolyzing)	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
AXK09051.1|1310390_1310669_+	hypothetical protein	NA	NA	NA	NA	NA
AXK09052.1|1310727_1311015_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AXK09053.1|1311016_1312357_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
AXK09054.1|1312452_1313142_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AXK09055.1|1313154_1314585_+	MFS transporter	NA	NA	NA	NA	NA
AXK09056.1|1316309_1317131_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AXK09057.1|1317141_1318713_+	amidohydrolase	NA	NA	NA	NA	NA
AXK09058.1|1318741_1319719_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK09059.1|1319745_1320549_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
AXK09060.1|1320545_1321340_+	ABC transporter permease	NA	NA	NA	NA	NA
AXK09061.1|1321347_1322583_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
AXK09062.1|1322575_1323010_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
AXK09063.1|1323758_1324709_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK09064.1|1325330_1327058_-	STAS domain-containing protein	NA	NA	NA	NA	NA
AXK09065.1|1327169_1328528_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AXK09066.1|1328819_1329770_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
CP031113	Bordetella pertussis strain UK39 chromosome, complete genome	4108152	1774661	1838431	4108152	protease,tRNA,transposase	Lake_Baikal_phage(18.18%)	54	NA	NA
AXK09447.1|1774661_1775612_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK09448.1|1775760_1776099_-	BON domain-containing protein	NA	NA	NA	NA	NA
AXK09449.1|1776156_1776318_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
AXK09450.1|1776349_1776550_-	CsbD family protein	NA	NA	NA	NA	NA
AXK09451.1|1776815_1779389_-	cyanophycin synthetase	NA	NA	NA	NA	NA
AXK09452.1|1779459_1782033_-	cyanophycin synthetase	NA	NA	NA	NA	NA
AXK09453.1|1784559_1785048_+	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
AXK09454.1|1785139_1786291_-	N-acetyltransferase	NA	NA	NA	NA	NA
AXK09455.1|1786344_1787166_+	DUF455 family protein	NA	NA	NA	NA	NA
AXK09456.1|1787204_1788434_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
AXK09457.1|1788562_1789003_+	DUF937 domain-containing protein	NA	NA	NA	NA	NA
AXK09458.1|1788947_1789127_+	hypothetical protein	NA	NA	NA	NA	NA
AXK09459.1|1789113_1790064_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK09460.1|1790060_1790534_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AXK09461.1|1790695_1791634_+	hypothetical protein	NA	NA	NA	NA	NA
AXK09462.1|1791635_1792844_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
AXK09463.1|1792948_1793455_-	lipoprotein signal peptidase	NA	NA	NA	NA	NA
AXK09464.1|1793457_1796319_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
AXK09465.1|1796308_1797274_-	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
AXK09466.1|1797333_1799328_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
AXK09467.1|1799425_1800376_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK09468.1|1800372_1800747_-	hypothetical protein	NA	NA	NA	NA	NA
AXK09469.1|1801008_1802217_+	acyl-CoA desaturase	NA	NA	NA	NA	NA
AXK09470.1|1802213_1804514_+	DNA helicase II	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
AXK09471.1|1804566_1807179_-	TonB-dependent receptor	NA	NA	NA	NA	NA
AXK09472.1|1807538_1809464_-	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
AXK09473.1|1809460_1810357_-	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
AXK09474.1|1810363_1811503_-	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
AXK09475.1|1811502_1812324_-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
AXK09476.1|1813894_1814224_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AXK09477.1|1814606_1815863_+	autotransporter Phg	NA	NA	NA	NA	NA
AXK09478.1|1815937_1816219_+	hypothetical protein	NA	NA	NA	NA	NA
AXK09479.1|1816260_1816581_+	hypothetical protein	NA	NA	NA	NA	NA
AXK09480.1|1816887_1817091_+	cold-shock protein CspA	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
AXK09481.1|1817174_1817741_+	DUF924 family protein	NA	NA	NA	NA	NA
AXK09482.1|1818086_1818287_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
AXK09483.1|1818398_1818977_-	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
AXK09484.1|1819155_1820466_+	trigger factor	NA	NA	NA	NA	NA
AXK09485.1|1820468_1821122_+|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
AXK09486.1|1821226_1822531_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
AXK09487.1|1822719_1825173_+	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
AXK09488.1|1825296_1826247_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXK09489.1|1826474_1827698_+	CoA transferase	NA	NA	NA	NA	NA
AXK09490.1|1827763_1828735_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK09491.1|1828747_1829203_+	MaoC family dehydratase	NA	NA	NA	NA	NA
AXK09492.1|1829216_1830020_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AXK09493.1|1830016_1830448_+	hypothetical protein	NA	NA	NA	NA	NA
AXK09494.1|1830444_1831602_+	thiolase	NA	NA	NA	NA	NA
AXK09495.1|1831623_1832400_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
AXK09496.1|1834564_1835281_+	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
AXK09497.1|1835273_1835915_+	CoA transferase subunit B	NA	NA	NA	NA	NA
AXK09498.1|1835949_1836681_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK09499.1|1836698_1836911_+	hypothetical protein	NA	NA	NA	NA	NA
AXK09500.1|1837480_1838431_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
CP031113	Bordetella pertussis strain UK39 chromosome, complete genome	4108152	1851624	1910891	4108152	protease,tRNA,transposase	Klosneuvirus(40.0%)	51	NA	NA
AXK09514.1|1851624_1852575_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK09515.1|1852698_1853508_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AXK09516.1|1853707_1854658_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK09517.1|1855931_1857149_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
AXK09518.1|1858205_1859108_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AXK09519.1|1859184_1860057_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
AXK09520.1|1860187_1860556_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
AXK09521.1|1860613_1861660_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
AXK09522.1|1861855_1863112_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
AXK09523.1|1863116_1864454_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
AXK09524.1|1864603_1865560_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXK09525.1|1865662_1866595_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
AXK09526.1|1866710_1867031_+	hypothetical protein	NA	NA	NA	NA	NA
AXK09527.1|1867032_1867383_+	hypothetical protein	NA	NA	NA	NA	NA
AXK09528.1|1867430_1869005_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK09529.1|1869057_1870002_+	ABC transporter permease	NA	NA	NA	NA	NA
AXK09530.1|1870019_1870850_+	ABC transporter permease	NA	NA	NA	NA	NA
AXK09531.1|1870842_1872477_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
AXK09532.1|1872473_1873829_+	amidase	NA	NA	NA	NA	NA
AXK09533.1|1874735_1876313_+	lipoprotein	NA	NA	NA	NA	NA
AXK09534.1|1876316_1877591_+	hypothetical protein	NA	NA	NA	NA	NA
AXK11487.1|1877688_1878063_+	hypothetical protein	NA	NA	NA	NA	NA
AXK09535.1|1879778_1880912_+	general secretion pathway protein	NA	NA	NA	NA	NA
AXK09536.1|1880949_1881555_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
AXK09537.1|1881551_1882370_+	hypothetical protein	NA	NA	NA	NA	NA
AXK09538.1|1882441_1885066_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
AXK09539.1|1885052_1885307_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
AXK09540.1|1885373_1885955_-	hypothetical protein	NA	NA	NA	NA	NA
AXK09541.1|1886258_1886519_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
AXK09542.1|1886684_1887308_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
AXK09543.1|1887307_1888081_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
AXK09544.1|1888077_1889286_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
AXK09545.1|1889311_1889785_-	RidA family protein	NA	NA	NA	NA	NA
AXK09546.1|1889858_1890809_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK09547.1|1890907_1891858_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK09548.1|1891955_1893305_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
AXK09549.1|1894070_1894826_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
AXK09550.1|1894918_1897801_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
AXK09551.1|1898123_1898549_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
AXK09552.1|1898576_1899725_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
AXK09553.1|1899721_1900228_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AXK09554.1|1900234_1901530_+	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin)	NA	NA	NA	NA	NA
AXK09555.1|1901570_1902875_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
AXK09556.1|1902876_1903515_+	hypothetical protein	NA	NA	NA	NA	NA
AXK09557.1|1903517_1904678_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
AXK09558.1|1904704_1906060_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
AXK09559.1|1906063_1907134_+	histidinol-phosphate aminotransferase 1	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
AXK09560.1|1907272_1907509_+	RNA-binding protein Hfq	NA	NA	NA	NA	NA
AXK09561.1|1907596_1908703_+	GTPase HflX	NA	NA	NA	NA	NA
AXK09562.1|1908668_1909973_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
AXK09563.1|1909991_1910891_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 15
CP031113	Bordetella pertussis strain UK39 chromosome, complete genome	4108152	1921131	1964402	4108152	transposase	Staphylococcus_phage(25.0%)	44	NA	NA
AXK09571.1|1921131_1922082_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK09572.1|1922068_1922269_-	hypothetical protein	NA	NA	NA	NA	NA
AXK09573.1|1922281_1923367_+	AI-2E family transporter	NA	NA	NA	NA	NA
AXK09574.1|1923382_1924144_-	ABC transporter permease	NA	NA	NA	NA	NA
AXK09575.1|1924140_1925064_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
AXK09576.1|1925162_1925687_-	N-acetyltransferase	NA	NA	NA	NA	NA
AXK09577.1|1925695_1926439_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
AXK09578.1|1926534_1926774_-	hypothetical protein	NA	NA	NA	NA	NA
AXK09579.1|1926787_1926940_-	lipoprotein	NA	NA	NA	NA	NA
AXK09580.1|1927025_1928516_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
AXK09581.1|1928607_1929546_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
AXK09582.1|1929542_1929719_-	CcoQ/FixQ family Cbb3-type cytochrome c oxidase assembly chaperone	NA	NA	NA	NA	NA
AXK09583.1|1929721_1930384_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
AXK11489.1|1932005_1932149_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
AXK09584.1|1932145_1933120_-	hypothetical protein	NA	NA	NA	NA	NA
AXK09585.1|1933286_1934237_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK09586.1|1934233_1935508_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
AXK09587.1|1935605_1936805_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
AXK09588.1|1936801_1937455_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AXK09589.1|1937451_1938888_+	dethiobiotin synthase	NA	NA	NA	NA	NA
AXK09590.1|1938875_1939235_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
AXK09591.1|1940206_1941157_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK09592.1|1941254_1942205_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK09593.1|1942201_1944067_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
AXK11490.1|1944324_1945845_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
AXK09594.1|1945932_1946583_-	flavodoxin family protein	NA	NA	NA	NA	NA
AXK09595.1|1947531_1948827_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
AXK09596.1|1948848_1949733_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXK11491.1|1949831_1950707_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
AXK09597.1|1950696_1951053_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
AXK09598.1|1951126_1952158_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AXK09599.1|1952287_1952467_-	DUF3008 family protein	NA	NA	NA	NA	NA
AXK09600.1|1952564_1953089_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
AXK09601.1|1953099_1953936_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AXK09602.1|1954048_1954420_+	transcriptional regulator	NA	NA	NA	NA	NA
AXK09603.1|1954416_1954968_+	ATPase	NA	NA	NA	NA	NA
AXK09604.1|1954983_1956675_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
AXK09605.1|1956723_1957404_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AXK09606.1|1957651_1958116_-	hypothetical protein	NA	NA	NA	NA	NA
AXK09607.1|1958285_1959215_+	ZIP family metal transporter	NA	NA	NA	NA	NA
AXK09608.1|1959227_1959875_-	hypothetical protein	NA	NA	NA	NA	NA
AXK09609.1|1959948_1961766_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
AXK09610.1|1961849_1962800_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK09611.1|1963451_1964402_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
CP031113	Bordetella pertussis strain UK39 chromosome, complete genome	4108152	1994178	2058543	4108152	transposase	Vibrio_phage(20.0%)	51	NA	NA
AXK09639.1|1994178_1995129_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK09640.1|1995349_1996300_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK09641.1|1996397_1997363_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK09642.1|1997500_1998400_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXK09643.1|2000994_2002482_+	hypothetical protein	NA	NA	NA	NA	NA
AXK09644.1|2002492_2003689_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
AXK09645.1|2003761_2005081_+	phenylacetate--CoA ligase family protein	NA	NA	NA	NA	NA
AXK09646.1|2005077_2005953_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AXK09647.1|2005983_2007153_-	CoA transferase	NA	NA	NA	NA	NA
AXK09648.1|2007149_2007464_-	ferredoxin	NA	NA	NA	NA	NA
AXK09649.1|2007485_2008208_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
AXK09650.1|2008207_2009026_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AXK09651.1|2009030_2009558_-	ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
AXK09652.1|2009563_2010829_-	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA	NA
AXK09653.1|2011178_2012318_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK09654.1|2012395_2013268_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AXK09655.1|2014137_2015088_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK09656.1|2015047_2015683_-	hypothetical protein	NA	NA	NA	NA	NA
AXK09657.1|2016042_2017365_-	isocitrate lyase	NA	NA	NA	NA	NA
AXK09658.1|2017593_2018505_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	5.9e-42
AXK09659.1|2019929_2020502_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
AXK09660.1|2020541_2022371_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
AXK09661.1|2022333_2023392_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
AXK09662.1|2023429_2023891_-	holo-ACP synthase	NA	NA	NA	NA	NA
AXK09663.1|2023975_2024722_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
AXK09664.1|2026212_2029443_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AXK09665.1|2029509_2030841_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AXK09666.1|2031093_2031468_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AXK09667.1|2031570_2032749_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
AXK09668.1|2032759_2033350_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
AXK11495.1|2033460_2034267_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXK09669.1|2034292_2035087_-	ATP-binding cassette domain-containing protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
AXK09670.1|2036087_2037062_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK11496.1|2037220_2037733_-	superoxide dismutase [Cu-Zn] SodC1	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
AXK09671.1|2037889_2038861_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK09672.1|2040605_2041412_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AXK11497.1|2041408_2042545_-	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
AXK09673.1|2042660_2043425_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AXK09674.1|2043538_2044309_-	spermidine synthase	NA	NA	NA	NA	NA
AXK09675.1|2044393_2045605_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
AXK09676.1|2045653_2046028_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
AXK09677.1|2046128_2047391_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
AXK09678.1|2047387_2048245_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
AXK09679.1|2048417_2049419_-	glycine/betaine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK09680.1|2049870_2050821_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK09681.1|2052335_2053535_+	MFS transporter	NA	NA	NA	NA	NA
AXK09682.1|2053903_2054140_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
AXK09683.1|2054203_2054371_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
AXK09684.1|2054484_2056380_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
AXK09685.1|2056543_2057494_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK09686.1|2057592_2058543_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
CP031113	Bordetella pertussis strain UK39 chromosome, complete genome	4108152	2183998	2268545	4108152	tRNA,transposase	Moraxella_phage(28.57%)	57	NA	NA
AXK11503.1|2183998_2185015_+|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AXK09786.1|2185408_2186701_-	aspartate kinase	NA	NA	NA	NA	NA
AXK09787.1|2186773_2187808_-|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	NA	NA	NA	NA
AXK09788.1|2187868_2188819_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK09789.1|2188916_2189882_-	acetyl-CoA carboxylase carboxyl transferase subunit alpha	NA	NA	NA	NA	NA
AXK09790.1|2189918_2190563_-	DNA-3-methyladenine glycosylase 2 family protein	NA	NA	NA	NA	NA
AXK09791.1|2190582_2192043_-|tRNA	cysteine--tRNA ligase	tRNA	A0A2K9L6B7	Tupanvirus	27.9	2.5e-34
AXK09792.1|2192282_2192966_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
AXK11504.1|2193094_2193604_+	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
AXK09793.1|2193596_2194373_+	UDP-2,3-diacylglucosamine diphosphatase	NA	NA	NA	NA	NA
AXK09794.1|2194580_2195444_-	undecaprenyl-diphosphatase	NA	NA	NA	NA	NA
AXK09795.1|2195468_2197055_-	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	42.0	1.9e-35
AXK09796.1|2197181_2197964_-	inositol monophosphatase	NA	NA	NA	NA	NA
AXK09797.1|2198071_2198848_+	RNA methyltransferase	NA	NA	NA	NA	NA
AXK09798.1|2199065_2200058_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK09799.1|2200159_2200978_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AXK09800.1|2200991_2201825_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
AXK09801.1|2201930_2202881_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK09802.1|2202985_2204017_+	peptidase C45	NA	NA	NA	NA	NA
AXK09803.1|2204030_2207654_-	5-oxoprolinase	NA	NA	NA	NA	NA
AXK09804.1|2207732_2208245_-	transcriptional regulator	NA	NA	NA	NA	NA
AXK09805.1|2209419_2210121_+	hypothetical protein	NA	NA	NA	NA	NA
AXK09806.1|2210141_2211107_+	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK09807.1|2211120_2211612_+	TRAP transporter small permease	NA	NA	NA	NA	NA
AXK09808.1|2213057_2214143_+	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK09809.1|2214149_2214650_+	TRAP transporter small permease	NA	NA	NA	NA	NA
AXK09810.1|2215967_2217722_-	filamentous hemagglutinin transporter protein FhaC	NA	NA	NA	NA	NA
AXK11505.1|2217714_2218812_-	type 1 fimbrial protein	NA	NA	NA	NA	NA
AXK09811.1|2218825_2221447_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA	NA
AXK09812.1|2221509_2222334_-	molecular chaperone	NA	NA	NA	NA	NA
AXK09813.1|2222493_2222931_-	protein FimA	NA	NA	NA	NA	NA
AXK09814.1|2223006_2233779_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	32.5	3.6e-29
AXK09815.1|2234205_2234835_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AXK09816.1|2234843_2238560_+	hybrid sensor histidine kinase/response regulator	NA	A0A1V0SGX0	Hokovirus	32.0	4.2e-33
AXK09817.1|2238603_2239479_-	EAL domain-containing protein	NA	NA	NA	NA	NA
AXK09818.1|2239612_2240446_-	putative hydro-lyase	NA	NA	NA	NA	NA
AXK09819.1|2240464_2241814_-	amidase	NA	NA	NA	NA	NA
AXK09820.1|2244999_2245950_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK09821.1|2246066_2246786_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AXK09822.1|2246958_2247945_+	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK09823.1|2247945_2248428_+	TRAP transporter small permease	NA	NA	NA	NA	NA
AXK09824.1|2248431_2249715_+	TRAP transporter large permease	NA	NA	NA	NA	NA
AXK09825.1|2249711_2250650_+	CoA ester lyase	NA	NA	NA	NA	NA
AXK09826.1|2250646_2252356_+	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
AXK09827.1|2252365_2253613_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
AXK11506.1|2255223_2256513_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
AXK09828.1|2257650_2258424_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	3.1e-31
AXK09829.1|2259085_2259829_-	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK09830.1|2259903_2260644_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AXK09831.1|2260839_2261676_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
AXK09832.1|2261726_2262497_-	TatD family deoxyribonuclease	NA	NA	NA	NA	NA
AXK09833.1|2262546_2263599_-	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
AXK09834.1|2263595_2264222_-	thymidylate kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
AXK09835.1|2264218_2265265_-	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
AXK09836.1|2265431_2266448_+	folate-binding protein	NA	NA	NA	NA	NA
AXK09837.1|2266546_2267497_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK11507.1|2267594_2268545_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
CP031113	Bordetella pertussis strain UK39 chromosome, complete genome	4108152	2275017	2345035	4108152	tRNA,transposase	Bacillus_virus(16.67%)	60	NA	NA
AXK09842.1|2275017_2275968_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK09843.1|2276952_2277726_-	ABC transporter permease	NA	NA	NA	NA	NA
AXK09844.1|2277722_2278721_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK09845.1|2278805_2279582_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
AXK09846.1|2279737_2281405_-	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.6e-53
AXK09847.1|2281722_2282916_+	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AXK09848.1|2282903_2283527_+	hypothetical protein	NA	NA	NA	NA	NA
AXK09849.1|2283523_2285425_+	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AXK09850.1|2285473_2286268_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AXK09851.1|2286280_2287282_-	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
AXK09852.1|2287278_2287785_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.4	3.4e-07
AXK09853.1|2287777_2288626_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
AXK09854.1|2288723_2289266_-	hypothetical protein	NA	NA	NA	NA	NA
AXK09855.1|2289309_2290260_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK09856.1|2290414_2290741_-	cation:proton antiporter	NA	NA	NA	NA	NA
AXK09857.1|2290737_2291022_-	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
AXK09858.1|2291018_2291498_-	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
AXK09859.1|2291494_2293123_-	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
AXK09860.1|2293119_2293464_-	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
AXK09861.1|2293463_2296397_-	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
AXK09862.1|2297555_2298506_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK11508.1|2298604_2298901_-	hypothetical protein	NA	NA	NA	NA	NA
AXK09863.1|2299007_2299925_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXK09864.1|2299929_2300643_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AXK09865.1|2300656_2301628_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK09866.1|2303347_2303728_+	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AXK09867.1|2303731_2304919_+	MFS transporter	NA	NA	NA	NA	NA
AXK11509.1|2305357_2306080_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
AXK09868.1|2306372_2307323_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK09869.1|2307319_2307748_-	hypothetical protein	NA	NA	NA	NA	NA
AXK11510.1|2309149_2310112_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK09870.1|2310227_2311181_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXK09871.1|2311190_2312183_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK09872.1|2312234_2312990_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
AXK09873.1|2313054_2313744_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
AXK09874.1|2313965_2314916_+	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
AXK09875.1|2314946_2316143_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
AXK11511.1|2316139_2316913_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
AXK11512.1|2316980_2317952_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK09876.1|2318037_2318982_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXK09877.1|2318959_2319829_-	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
AXK11513.1|2320072_2320696_+	glutathione S-transferase	NA	NA	NA	NA	NA
AXK09878.1|2321010_2321310_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AXK09879.1|2321323_2324398_-	autotransporter SphB2	NA	NA	NA	NA	NA
AXK09880.1|2324527_2325202_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AXK09881.1|2325194_2327009_+	histidine kinase	NA	NA	NA	NA	NA
AXK09882.1|2327062_2328010_-	hypothetical protein	NA	NA	NA	NA	NA
AXK09883.1|2328113_2329064_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK09884.1|2329616_2331242_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
AXK11514.1|2331291_2332326_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
AXK09885.1|2332328_2333675_-	hypothetical protein	NA	NA	NA	NA	NA
AXK11515.1|2333671_2335186_-	VWA domain-containing protein	NA	NA	NA	NA	NA
AXK09886.1|2335176_2336187_-	VWA domain-containing protein	NA	NA	NA	NA	NA
AXK09887.1|2336660_2337602_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
AXK09888.1|2337610_2338579_-	AAA family ATPase	NA	NA	NA	NA	NA
AXK09889.1|2340118_2341087_+	transporter	NA	NA	NA	NA	NA
AXK09890.1|2341264_2342254_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK09891.1|2342300_2343059_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
AXK09892.1|2343248_2343986_+	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
AXK09893.1|2344084_2345035_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
CP031113	Bordetella pertussis strain UK39 chromosome, complete genome	4108152	2389092	2442204	4108152	transposase	Ectocarpus_siliculosus_virus(11.11%)	50	NA	NA
AXK09924.1|2389092_2390043_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK09925.1|2390062_2390968_-	pirin family protein	NA	NA	NA	NA	NA
AXK09926.1|2391045_2391744_-	pirin family protein	NA	NA	NA	NA	NA
AXK09927.1|2391903_2392848_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXK09928.1|2392857_2394348_-	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
AXK09929.1|2394344_2395412_-	PAS domain-containing sensor histidine kinase	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
AXK09930.1|2395475_2396888_-	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
AXK09931.1|2397073_2398294_-	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
AXK09932.1|2398315_2399266_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK09933.1|2399364_2400015_-	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
AXK09934.1|2400132_2401935_+	EAL domain-containing protein	NA	NA	NA	NA	NA
AXK09935.1|2401812_2403552_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	27.1	1.0e-10
AXK09936.1|2403586_2404492_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXK09937.1|2404673_2406050_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AXK09938.1|2406216_2406957_-	ribonuclease PH	NA	NA	NA	NA	NA
AXK09939.1|2407093_2408020_+	YicC family protein	NA	NA	NA	NA	NA
AXK09940.1|2408292_2408448_+	hypothetical protein	NA	NA	NA	NA	NA
AXK09941.1|2408460_2408589_+	hypothetical protein	NA	NA	NA	NA	NA
AXK09942.1|2408585_2408870_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AXK09943.1|2408928_2410419_-	AMP nucleosidase	NA	NA	NA	NA	NA
AXK09944.1|2410663_2411263_+	NlpC/P60 family protein	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
AXK09945.1|2411267_2412038_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
AXK09946.1|2412275_2412989_+	cytochrome C	NA	NA	NA	NA	NA
AXK09947.1|2412985_2413903_+	cytochrome C	NA	NA	NA	NA	NA
AXK09948.1|2414023_2414671_+	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	3.1e-13
AXK09949.1|2414712_2414916_+	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
AXK09950.1|2414940_2417220_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
AXK09951.1|2417232_2417961_-	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
AXK09952.1|2417957_2418617_-	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
AXK09953.1|2418685_2419438_-	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
AXK09954.1|2419619_2420570_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK09955.1|2421461_2422367_+	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
AXK09956.1|2422378_2423506_+	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
AXK09957.1|2423594_2424209_-	fimbrial protein	NA	NA	NA	NA	NA
AXK09958.1|2424867_2426055_-	cupin domain-containing protein	NA	NA	NA	NA	NA
AXK11518.1|2426051_2428649_-	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
AXK09959.1|2428903_2429119_+	dodecin domain-containing protein	NA	NA	NA	NA	NA
AXK09960.1|2429574_2430129_-	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
AXK09961.1|2430396_2430957_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AXK09962.1|2431068_2432373_+	peptidase	NA	NA	NA	NA	NA
AXK09963.1|2432369_2433881_+	thiol oxidoreductase	NA	NA	NA	NA	NA
AXK09964.1|2433986_2434988_+	aminopeptidase	NA	NA	NA	NA	NA
AXK09965.1|2434968_2436090_+	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
AXK09966.1|2436187_2437138_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK09967.1|2437134_2437761_-	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
AXK11519.1|2437826_2438672_+	hypothetical protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
AXK09968.1|2438775_2439375_+	hypothetical protein	NA	NA	NA	NA	NA
AXK09969.1|2439371_2440136_+	DUF1828 domain-containing protein	NA	NA	NA	NA	NA
AXK09970.1|2440205_2441156_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK09971.1|2441253_2442204_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
CP031113	Bordetella pertussis strain UK39 chromosome, complete genome	4108152	2455512	2507877	4108152	protease,tRNA,transposase	Planktothrix_phage(15.38%)	55	NA	NA
AXK09979.1|2455512_2456463_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK09980.1|2456560_2456962_-	aryl-sulfate sulfotransferase	NA	NA	NA	NA	NA
AXK09981.1|2457034_2457613_-|protease	protease	protease	NA	NA	NA	NA
AXK11520.1|2457730_2458219_-|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
AXK09982.1|2458232_2459165_-	site-specific tyrosine recombinase XerD	NA	A0A0K2CP59	Brevibacillus_phage	29.5	2.3e-25
AXK09983.1|2459202_2460090_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	28.7	3.4e-18
AXK09984.1|2460247_2461942_+	thiamine pyrophosphate-binding protein	NA	E5ERI2	Ostreococcus_lucimarinus_virus	24.5	3.8e-26
AXK09985.1|2461958_2463215_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AXK09986.1|2463352_2463898_-	acyl dehydratase	NA	NA	NA	NA	NA
AXK09987.1|2463929_2465489_-	acetolactate synthase large subunit	NA	NA	NA	NA	NA
AXK09988.1|2465617_2466370_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	2.8e-29
AXK09989.1|2466391_2467084_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AXK09990.1|2467106_2467898_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK09991.1|2467924_2468830_-	agmatinase	NA	NA	NA	NA	NA
AXK09992.1|2469022_2469859_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AXK09993.1|2469950_2470973_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	40.7	1.6e-67
AXK09994.1|2471109_2472162_-	threonylcarbamoyl-AMP synthase	NA	S4VW33	Pandoravirus	37.8	4.8e-35
AXK09995.1|2472166_2473357_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
AXK09996.1|2473359_2473839_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.5	6.5e-16
AXK09997.1|2474024_2474504_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
AXK09998.1|2474511_2474748_-	hypothetical protein	NA	NA	NA	NA	NA
AXK09999.1|2474767_2475169_-	type II toxin-antitoxin system MqsA family antitoxin	NA	NA	NA	NA	NA
AXK10000.1|2475171_2475423_-	type II toxin-antitoxin system MqsR family toxin	NA	NA	NA	NA	NA
AXK10001.1|2475477_2476359_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0M4JBD3	Mollivirus	36.1	1.8e-51
AXK10002.1|2476583_2477030_+	GFA family protein	NA	NA	NA	NA	NA
AXK10003.1|2477114_2478179_-	fructose-bisphosphate aldolase class II	NA	NA	NA	NA	NA
AXK10004.1|2478315_2478897_-	MOSC domain-containing protein	NA	NA	NA	NA	NA
AXK10005.1|2479131_2480262_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AXK10006.1|2480439_2481666_+	acetamidase/formamidase family protein	NA	A0A1V0S8X7	Catovirus	58.8	5.2e-134
AXK10007.1|2481724_2482240_+	transporter	NA	NA	NA	NA	NA
AXK10008.1|2482262_2482589_+	zinc ribbon domain-containing protein	NA	NA	NA	NA	NA
AXK10009.1|2482622_2483813_+	NAD-dependent formate dehydrogenase	NA	NA	NA	NA	NA
AXK10010.1|2483886_2484291_+	GFA family protein	NA	NA	NA	NA	NA
AXK10011.1|2484507_2485458_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK10012.1|2485555_2486326_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.5	8.3e-29
AXK10013.1|2486322_2486994_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuD	NA	NA	NA	NA	NA
AXK10014.1|2486990_2487632_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuC	NA	NA	NA	NA	NA
AXK10015.1|2487644_2488565_-	ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB	NA	NA	NA	NA	NA
AXK10016.1|2488725_2489886_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK10017.1|2489927_2490878_-	ornithine cyclodeaminase family protein	NA	NA	NA	NA	NA
AXK10018.1|2491476_2491701_+	hypothetical protein	NA	NA	NA	NA	NA
AXK10019.1|2491865_2493560_-	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
AXK10020.1|2493681_2493951_-	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
AXK10021.1|2494066_2494465_-	PTS mannose transporter subunit IIA	NA	NA	NA	NA	NA
AXK10022.1|2494475_2495432_-	glutathione synthetase	NA	NA	NA	NA	NA
AXK10023.1|2495568_2496114_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	29.9	9.1e-14
AXK10024.1|2496134_2498084_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
AXK10025.1|2498471_2499248_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AXK10026.1|2499253_2499646_+	hypothetical protein	NA	NA	NA	NA	NA
AXK10027.1|2500066_2501017_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK10028.1|2501013_2502111_-	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
AXK10029.1|2502142_2503093_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK10030.1|2504873_2506115_-	MFS transporter	NA	NA	NA	NA	NA
AXK10031.1|2506126_2506900_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
AXK10032.1|2506926_2507877_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
CP031113	Bordetella pertussis strain UK39 chromosome, complete genome	4108152	2512776	2566213	4108152	tRNA,transposase	Planktothrix_phage(28.57%)	49	NA	NA
AXK10037.1|2512776_2513589_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
AXK10038.1|2513592_2515296_-	peptidoglycan-binding protein LysM	NA	NA	NA	NA	NA
AXK10039.1|2515346_2516477_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AXK10040.1|2516663_2517740_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
AXK11521.1|2517821_2518472_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
AXK10041.1|2518486_2519920_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
AXK10042.1|2520173_2520992_-	tungsten ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK10043.1|2520988_2521693_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
AXK10044.1|2522592_2523708_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXK10045.1|2523741_2524116_-	hypothetical protein	NA	NA	NA	NA	NA
AXK10046.1|2524138_2525296_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
AXK10047.1|2525308_2525542_-	lipoprotein	NA	NA	NA	NA	NA
AXK10048.1|2526176_2529146_-	formate dehydrogenase	NA	NA	NA	NA	NA
AXK10049.1|2529160_2529370_-	formate dehydrogenase	NA	NA	NA	NA	NA
AXK10050.1|2529521_2530151_-	molecular chaperone	NA	NA	NA	NA	NA
AXK10051.1|2530147_2532265_-	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA	NA
AXK10052.1|2532261_2532942_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
AXK10053.1|2532938_2533499_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
AXK10054.1|2533505_2534603_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
AXK10055.1|2534740_2535349_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
AXK10056.1|2535345_2536638_+	molybdopterin molybdenumtransferase MoeA	NA	NA	NA	NA	NA
AXK10057.1|2536651_2537194_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
AXK10058.1|2537203_2538040_-	M48 family peptidase	NA	NA	NA	NA	NA
AXK10059.1|2538073_2539135_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
AXK10060.1|2539176_2540229_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
AXK10061.1|2540244_2540547_-	hypothetical protein	NA	NA	NA	NA	NA
AXK10062.1|2540688_2541639_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK10063.1|2541816_2543511_+	iron ABC transporter permease	NA	NA	NA	NA	NA
AXK10064.1|2543507_2544593_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
AXK10065.1|2544640_2545540_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXK10066.1|2545550_2546195_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
AXK10067.1|2547216_2550459_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
AXK10068.1|2550469_2551567_-	carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.2	5.3e-53
AXK10069.1|2551829_2552813_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	5.9e-11
AXK10070.1|2552910_2553861_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK10071.1|2553958_2554909_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK10072.1|2555006_2555957_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK10073.1|2555966_2556656_-	VIT family protein	NA	NA	NA	NA	NA
AXK10074.1|2556715_2557153_-	PaaI family thioesterase	NA	NA	NA	NA	NA
AXK10075.1|2557198_2558092_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
AXK10076.1|2558139_2559312_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AXK10077.1|2559308_2560463_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AXK10078.1|2560659_2561010_-	RnfH family protein	NA	NA	NA	NA	NA
AXK10079.1|2560999_2561434_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
AXK10080.1|2561450_2562401_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK10081.1|2562547_2563015_+	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
AXK10082.1|2562995_2564153_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
AXK10083.1|2564218_2565145_-	paraslipin	NA	NA	NA	NA	NA
AXK10084.1|2565262_2566213_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
CP031113	Bordetella pertussis strain UK39 chromosome, complete genome	4108152	2608492	2674984	4108152	transposase	Salmonella_phage(33.33%)	54	NA	NA
AXK10123.1|2608492_2609443_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK10124.1|2609812_2610385_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
AXK10125.1|2610387_2611398_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
AXK10126.1|2611390_2611891_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
AXK10127.1|2611901_2612243_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
AXK10128.1|2612254_2613046_+	flagellar biosynthetic protein FliP	NA	NA	NA	NA	NA
AXK10129.1|2613062_2613332_+	flagellar biosynthetic protein FliQ	NA	NA	NA	NA	NA
AXK10130.1|2613354_2614143_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
AXK11525.1|2614189_2615206_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AXK10131.1|2615422_2616865_-	PAS domain S-box protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
AXK10132.1|2620676_2622209_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
AXK10133.1|2622242_2623889_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
AXK10134.1|2623958_2624981_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
AXK10135.1|2624998_2626132_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
AXK10136.1|2626134_2626824_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
AXK10137.1|2626823_2627609_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
AXK10138.1|2627652_2628417_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
AXK10139.1|2628455_2629877_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
AXK10140.1|2629942_2630647_-	flagellar basal body rod modification protein	NA	NA	NA	NA	NA
AXK10141.1|2630694_2631114_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
AXK10142.1|2631126_2631534_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
AXK11526.1|2631717_2632428_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
AXK10143.1|2632554_2632845_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
AXK10144.1|2632862_2633345_+	flagellar protein FlgN	NA	NA	NA	NA	NA
AXK10145.1|2637850_2639005_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
AXK11527.1|2639310_2640327_+|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AXK10146.1|2640573_2641362_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK10147.1|2641428_2642109_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AXK10148.1|2642105_2642876_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
AXK10149.1|2642973_2643924_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK10150.1|2643979_2644897_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
AXK10151.1|2644907_2646086_-	mandelate racemase	NA	NA	NA	NA	NA
AXK10152.1|2646105_2647101_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK10153.1|2648689_2649298_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
AXK10154.1|2649285_2650326_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AXK10155.1|2650343_2651306_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK10156.1|2651302_2652496_-	CoA transferase	NA	NA	NA	NA	NA
AXK10157.1|2652492_2653290_-	citryl-CoA lyase	NA	NA	NA	NA	NA
AXK10158.1|2653315_2654302_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK10159.1|2654320_2656360_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
AXK11528.1|2656561_2657242_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AXK10160.1|2657255_2658167_-	CoA ester lyase	NA	NA	NA	NA	NA
AXK10161.1|2658163_2658742_-	NADPH-dependent oxidoreductase	NA	NA	NA	NA	NA
AXK10162.1|2658880_2659786_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXK10163.1|2659793_2663213_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
AXK10164.1|2663200_2665801_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
AXK10165.1|2666756_2667389_-	PadR family transcriptional regulator	NA	NA	NA	NA	NA
AXK10166.1|2667782_2668541_+	EEP domain-containing protein	NA	NA	NA	NA	NA
AXK10167.1|2668537_2669740_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
AXK10168.1|2669927_2670878_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK10169.1|2671784_2672930_+	DUF3182 family protein	NA	NA	NA	NA	NA
AXK11529.1|2672949_2673672_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AXK10170.1|2673788_2673968_+	hypothetical protein	NA	NA	NA	NA	NA
AXK10171.1|2674033_2674984_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
CP031113	Bordetella pertussis strain UK39 chromosome, complete genome	4108152	2837542	2903119	4108152	tRNA,transposase	Oenococcus_phage(33.33%)	53	NA	NA
AXK10300.1|2837542_2838493_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK10301.1|2838590_2839541_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK10302.1|2839742_2840732_+	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
AXK11542.1|2840815_2841169_+	hypothetical protein	NA	NA	NA	NA	NA
AXK10303.1|2841246_2841855_-	hypothetical protein	NA	NA	NA	NA	NA
AXK10304.1|2843528_2844107_-	amino acid synthesis family protein	NA	NA	NA	NA	NA
AXK10305.1|2844131_2845085_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK10306.1|2845124_2846042_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AXK10307.1|2846163_2847090_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXK10308.1|2847097_2847844_-	aldolase	NA	NA	NA	NA	NA
AXK10309.1|2848168_2849110_+	LD-carboxypeptidase	NA	NA	NA	NA	NA
AXK10310.1|2849185_2849308_-	hypothetical protein	NA	NA	NA	NA	NA
AXK10311.1|2849336_2851034_-	sodium:proline symporter	NA	NA	NA	NA	NA
AXK10312.1|2851468_2852890_-	MFS transporter	NA	NA	NA	NA	NA
AXK10313.1|2853043_2853823_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
AXK11543.1|2853947_2854820_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXK10314.1|2854931_2856056_+	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
AXK10315.1|2856101_2857064_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK10316.1|2857056_2857911_+	2-pyrone-4,6-dicarboxylate hydrolase	NA	NA	NA	NA	NA
AXK10317.1|2858018_2858429_+	VOC family protein	NA	NA	NA	NA	NA
AXK10318.1|2858425_2859376_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AXK10319.1|2859473_2860355_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
AXK10320.1|2860432_2861812_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
AXK10321.1|2861850_2862696_-	FTR1 family iron permease	NA	NA	NA	NA	NA
AXK10322.1|2862711_2863056_-	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
AXK10323.1|2863058_2863595_-	hypothetical protein	NA	NA	NA	NA	NA
AXK10324.1|2863767_2864343_-	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
AXK10325.1|2864445_2865183_-	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
AXK10326.1|2865250_2866888_-	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
AXK10327.1|2866995_2867751_-	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
AXK10328.1|2867738_2868701_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
AXK10329.1|2868802_2869603_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
AXK10330.1|2869664_2871740_-	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
AXK10331.1|2871904_2874280_+	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
AXK10332.1|2874360_2875716_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
AXK10333.1|2877192_2877915_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
AXK10334.1|2877969_2878953_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK10335.1|2879082_2880033_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK10336.1|2880029_2880932_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXK10337.1|2881019_2881778_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
AXK10338.1|2881790_2882939_-	cell division protein ZapE	NA	NA	NA	NA	NA
AXK10339.1|2882979_2884407_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
AXK10340.1|2884636_2885851_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
AXK10341.1|2885896_2888767_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
AXK10342.1|2891177_2891666_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AXK10343.1|2891791_2894488_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
AXK10344.1|2894642_2896925_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
AXK10345.1|2897089_2897722_+	fimbrial protein	NA	NA	NA	NA	NA
AXK10346.1|2897820_2898771_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK10347.1|2898817_2899372_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
AXK10348.1|2899439_2900285_-	PHP domain-containing protein	NA	NA	NA	NA	NA
AXK10349.1|2900354_2901323_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AXK10350.1|2901322_2903119_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
CP031113	Bordetella pertussis strain UK39 chromosome, complete genome	4108152	2920688	2981628	4108152	holin,tRNA,transposase	Catovirus(22.22%)	50	NA	NA
AXK10360.1|2920688_2922209_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
AXK10361.1|2922251_2922554_+	hypothetical protein	NA	NA	NA	NA	NA
AXK10362.1|2922550_2923183_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AXK10363.1|2923261_2925127_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
AXK10364.1|2925123_2925939_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.7	7.5e-12
AXK10365.1|2925946_2927062_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK10366.1|2927966_2928845_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AXK10367.1|2928844_2929669_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
AXK10368.1|2929836_2930787_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK10369.1|2930969_2933849_+	EAL domain-containing protein	NA	NA	NA	NA	NA
AXK10370.1|2933830_2934607_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AXK10371.1|2934699_2936163_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
AXK10372.1|2936159_2936531_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
AXK10373.1|2936548_2937862_+	YihY family inner membrane protein	NA	NA	NA	NA	NA
AXK10374.1|2937898_2938357_+	CBS domain-containing protein	NA	NA	NA	NA	NA
AXK10375.1|2938468_2939419_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK10376.1|2939517_2940468_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK10377.1|2940464_2941478_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
AXK10378.1|2941617_2942604_+	homoserine kinase	NA	NA	NA	NA	NA
AXK10379.1|2942647_2943448_+	hypothetical protein	NA	NA	NA	NA	NA
AXK10380.1|2944250_2945201_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK10381.1|2945351_2945954_-	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
AXK10382.1|2945972_2946605_+	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
AXK10383.1|2946842_2948729_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
AXK10384.1|2948747_2949590_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
AXK10385.1|2949586_2950945_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
AXK10386.1|2951165_2951960_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AXK10387.1|2952190_2953684_-	exopolyphosphatase	NA	NA	NA	NA	NA
AXK10388.1|2953919_2956001_+	polyphosphate kinase 1	NA	NA	NA	NA	NA
AXK10389.1|2956195_2957236_+	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
AXK10390.1|2957370_2958387_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
AXK10391.1|2958408_2959266_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
AXK11545.1|2959310_2960087_+	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
AXK10392.1|2960453_2961404_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK10393.1|2961430_2961895_-	barstar family protein 2	NA	NA	NA	NA	NA
AXK10394.1|2963101_2965390_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
AXK10395.1|2965506_2966379_-	hypothetical protein	NA	NA	NA	NA	NA
AXK10396.1|2966421_2967576_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
AXK10397.1|2967610_2968441_-	transglycosylase	NA	NA	NA	NA	NA
AXK10398.1|2968524_2970069_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
AXK10399.1|2970111_2970471_-	hypothetical protein	NA	NA	NA	NA	NA
AXK10400.1|2970472_2970886_-|holin	phage holin family protein	holin	NA	NA	NA	NA
AXK10401.1|2970926_2971244_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
AXK10402.1|2971328_2972045_-	hypothetical protein	NA	NA	NA	NA	NA
AXK11546.1|2972308_2973730_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
AXK10403.1|2973796_2976544_-	pertactin autotransporter	NA	NA	NA	NA	NA
AXK11547.1|2976876_2977893_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AXK11548.1|2978228_2978870_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
AXK10404.1|2978960_2980397_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
AXK10405.1|2980554_2981628_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
>prophage 25
CP031113	Bordetella pertussis strain UK39 chromosome, complete genome	4108152	2986514	3059009	4108152	tRNA,transposase	Pseudomonas_phage(14.29%)	58	NA	NA
AXK11549.1|2986514_2987531_+|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AXK10410.1|2988468_2989896_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
AXK10411.1|2989892_2990915_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
AXK10412.1|2990904_2991378_+	endoribonuclease YbeY	NA	NA	NA	NA	NA
AXK10413.1|2991503_2992406_+	CBS domain-containing protein	NA	NA	NA	NA	NA
AXK10414.1|2992402_2994046_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
AXK10415.1|2996975_2997608_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
AXK10416.1|2997616_2998006_-	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
AXK10417.1|2998058_2999111_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
AXK10418.1|2999974_3001681_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
AXK10419.1|3001754_3002255_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
AXK10420.1|3002269_3004327_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
AXK10421.1|3004353_3004647_-	response regulator	NA	NA	NA	NA	NA
AXK10422.1|3004748_3005696_-	motility protein MotB	NA	NA	NA	NA	NA
AXK10423.1|3005708_3006584_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
AXK10424.1|3006704_3007265_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
AXK10425.1|3007299_3007623_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
AXK10426.1|3008058_3008796_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
AXK10427.1|3009094_3010045_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK10428.1|3010288_3010552_+	translation initiation factor IF-1	NA	NA	NA	NA	NA
AXK10429.1|3010625_3010907_+	hypothetical protein	NA	NA	NA	NA	NA
AXK10430.1|3010923_3011784_-	M23 family peptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
AXK10431.1|3011780_3012116_-	hypothetical protein	NA	NA	NA	NA	NA
AXK10432.1|3012169_3012820_-	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
AXK10433.1|3014500_3015445_-	hypothetical protein	NA	NA	NA	NA	NA
AXK10434.1|3015490_3015808_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AXK10435.1|3015810_3016749_-	curved DNA-binding protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
AXK10436.1|3016926_3017412_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AXK10437.1|3017430_3017979_+	damage-inducible protein DinB	NA	NA	NA	NA	NA
AXK10438.1|3018255_3019389_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AXK10439.1|3019426_3020134_+	glutathione transferase	NA	NA	NA	NA	NA
AXK11550.1|3020288_3022637_+	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
AXK10440.1|3022633_3023572_+	phosphate acetyltransferase	NA	NA	NA	NA	NA
AXK10441.1|3023597_3024788_+	acetate kinase	NA	NA	NA	NA	NA
AXK10442.1|3024784_3025558_+	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
AXK10443.1|3025587_3026781_-	phosphoglycerate kinase	NA	NA	NA	NA	NA
AXK10444.1|3026898_3027909_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
AXK10445.1|3027926_3029963_-	transketolase	NA	NA	NA	NA	NA
AXK10446.1|3030157_3030898_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
AXK10447.1|3030995_3031946_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK10448.1|3031988_3033164_+	FliC/FljB family flagellin	NA	NA	NA	NA	NA
AXK10449.1|3033385_3035176_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
AXK10450.1|3035188_3036850_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
AXK10451.1|3036862_3039568_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
AXK10452.1|3039860_3041615_+	PAS domain-containing sensor histidine kinase	NA	NA	NA	NA	NA
AXK10453.1|3041611_3042238_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AXK10454.1|3042234_3043086_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
AXK10455.1|3043161_3045276_+	M3 family peptidase	NA	NA	NA	NA	NA
AXK10456.1|3045426_3046077_+	SCO family protein	NA	NA	NA	NA	NA
AXK10457.1|3046222_3046474_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
AXK10458.1|3046543_3047926_-	multidrug transporter	NA	NA	NA	NA	NA
AXK10459.1|3047922_3051102_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AXK11551.1|3051909_3052827_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXK10460.1|3052878_3053610_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
AXK10461.1|3053669_3054242_+	chorismate lyase	NA	NA	NA	NA	NA
AXK11552.1|3055750_3056767_+|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AXK10462.1|3056904_3057954_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
AXK10463.1|3058058_3059009_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
CP031113	Bordetella pertussis strain UK39 chromosome, complete genome	4108152	3078409	3143345	4108152	transposase	Bacillus_phage(18.18%)	60	NA	NA
AXK10478.1|3078409_3079360_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK10479.1|3079458_3080043_-	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
AXK10480.1|3080077_3081067_-	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
AXK10481.1|3081063_3082005_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
AXK10482.1|3082001_3083222_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
AXK10483.1|3083264_3083579_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
AXK10484.1|3083770_3084130_-	integration host factor subunit beta	NA	NA	NA	NA	NA
AXK10485.1|3084131_3085862_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
AXK10486.1|3086034_3086706_-	(d)CMP kinase	NA	NA	NA	NA	NA
AXK10487.1|3086720_3088049_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
AXK10488.1|3088045_3088945_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
AXK10489.1|3089031_3090117_-	prephenate dehydratase	NA	NA	NA	NA	NA
AXK10490.1|3090109_3091243_-	phosphoserine aminotransferase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
AXK10491.1|3091242_3093924_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
AXK10492.1|3094294_3094876_+	OmpA family protein	NA	NA	NA	NA	NA
AXK10493.1|3094953_3095727_+	bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA	NA	NA	NA	NA
AXK10494.1|3095723_3096401_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AXK10495.1|3096616_3097798_+	MFS transporter	NA	NA	NA	NA	NA
AXK10496.1|3098274_3098532_+	hypothetical protein	NA	NA	NA	NA	NA
AXK10497.1|3098570_3098753_+	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
AXK10498.1|3098782_3099733_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK11554.1|3099862_3100255_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
AXK10499.1|3100531_3101443_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
AXK10500.1|3101567_3102542_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK10501.1|3102538_3103489_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK10502.1|3103586_3104672_-	DNA polymerase IV	NA	NA	NA	NA	NA
AXK10503.1|3104769_3105180_+	PaaI family thioesterase	NA	NA	NA	NA	NA
AXK10504.1|3105795_3107709_+	S9 family peptidase	NA	NA	NA	NA	NA
AXK10505.1|3107844_3110457_+	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
AXK10506.1|3110458_3111193_-	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
AXK10507.1|3111356_3112538_+	PepSY domain-containing protein	NA	NA	NA	NA	NA
AXK10508.1|3112534_3112747_+	hypothetical protein	NA	NA	NA	NA	NA
AXK10509.1|3112743_3113724_-	aldo/keto reductase	NA	NA	NA	NA	NA
AXK11555.1|3113769_3114597_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
AXK10510.1|3114743_3116561_+	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
AXK10511.1|3116615_3116999_+	ferredoxin	NA	NA	NA	NA	NA
AXK10512.1|3116995_3117946_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK10513.1|3118056_3118308_-	hypothetical protein	NA	NA	NA	NA	NA
AXK10514.1|3118501_3118717_-	hypothetical protein	NA	NA	NA	NA	NA
AXK10515.1|3118813_3119932_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
AXK10516.1|3120051_3120264_-	hypothetical protein	NA	NA	NA	NA	NA
AXK10517.1|3120423_3120645_-	hypothetical protein	NA	NA	NA	NA	NA
AXK10518.1|3120697_3121648_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK10519.1|3122823_3124194_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
AXK10520.1|3124226_3125018_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AXK10521.1|3125030_3126086_-	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA	NA
AXK10522.1|3126111_3126987_-	amidohydrolase	NA	NA	NA	NA	NA
AXK10523.1|3127092_3127341_-	hypothetical protein	NA	NA	NA	NA	NA
AXK10524.1|3127375_3128830_-	carboxylase	NA	NA	NA	NA	NA
AXK10525.1|3128826_3129348_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
AXK10526.1|3129376_3130729_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AXK10527.1|3130952_3133841_-	HD domain-containing protein	NA	NA	NA	NA	NA
AXK10528.1|3135985_3137287_+	phospholipase	NA	NA	NA	NA	NA
AXK10529.1|3137301_3138018_-	flagellar brake protein	NA	NA	NA	NA	NA
AXK10530.1|3138299_3138980_+	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
AXK10531.1|3138991_3139159_-	hypothetical protein	NA	NA	NA	NA	NA
AXK10532.1|3139267_3139420_-	hypothetical protein	NA	NA	NA	NA	NA
AXK10533.1|3139507_3140167_-	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
AXK10534.1|3140547_3142398_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
AXK10535.1|3142394_3143345_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
CP031113	Bordetella pertussis strain UK39 chromosome, complete genome	4108152	3152957	3203269	4108152	holin,transposase	Acidithiobacillus_phage(33.33%)	41	NA	NA
AXK10545.1|3152957_3153908_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK10546.1|3154006_3154957_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK10547.1|3155096_3156314_+	threonine ammonia-lyase	NA	NA	NA	NA	NA
AXK10548.1|3156307_3156919_-	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
AXK10549.1|3157552_3158530_+	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
AXK10550.1|3158673_3159420_+	triose-phosphate isomerase	NA	NA	NA	NA	NA
AXK10551.1|3159441_3159888_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
AXK10552.1|3160675_3162907_+|holin	high-affinity choline transporter BetT	holin	NA	NA	NA	NA
AXK10553.1|3162929_3163730_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AXK10554.1|3164011_3165244_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AXK10555.1|3165354_3166344_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK10556.1|3166374_3167763_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AXK10557.1|3169361_3170345_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK11556.1|3170541_3171558_+|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AXK10558.1|3171754_3172579_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
AXK10559.1|3172656_3173580_-	transcriptional regulator LrhA	NA	NA	NA	NA	NA
AXK10560.1|3173660_3174902_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
AXK10561.1|3174935_3175937_+	peptidase M14	NA	NA	NA	NA	NA
AXK10562.1|3176065_3177037_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK10563.1|3177061_3179146_+	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
AXK10564.1|3179212_3180205_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK10565.1|3180313_3181648_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
AXK10566.1|3181673_3183686_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
AXK11557.1|3183682_3185731_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
AXK10567.1|3185834_3186482_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AXK10568.1|3186622_3187117_+	azurin	NA	NA	NA	NA	NA
AXK10569.1|3187160_3187832_-	transcriptional regulator	NA	NA	NA	NA	NA
AXK10570.1|3187846_3189340_-	TolC family protein	NA	NA	NA	NA	NA
AXK10571.1|3189336_3192450_-	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
AXK10572.1|3192462_3193569_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AXK10573.1|3193692_3194361_-	transcriptional regulator	NA	NA	NA	NA	NA
AXK10574.1|3194581_3195532_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK10575.1|3195614_3197573_+|holin	high-affinity choline transporter BetT	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
AXK10576.1|3197600_3198302_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXK10577.1|3198448_3199264_+	diacylglycerol kinase	NA	NA	NA	NA	NA
AXK10578.1|3199260_3200076_+	metallophosphoesterase	NA	NA	NA	NA	NA
AXK10579.1|3200092_3200896_+	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
AXK10580.1|3200879_3201314_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AXK10581.1|3201310_3201745_-	PaaI family thioesterase	NA	NA	NA	NA	NA
AXK11558.1|3201746_3202346_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AXK10582.1|3202318_3203269_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
CP031113	Bordetella pertussis strain UK39 chromosome, complete genome	4108152	3236014	3305015	4108152	transposase	Klosneuvirus(16.67%)	56	NA	NA
AXK10610.1|3236014_3236965_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK10611.1|3236961_3237981_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
AXK10612.1|3237990_3240699_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
AXK10613.1|3240846_3241503_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
AXK10614.1|3241601_3242552_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK10615.1|3242657_3243593_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
AXK10616.1|3243792_3245487_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
AXK10617.1|3245521_3246448_+	VOC family protein	NA	NA	NA	NA	NA
AXK11559.1|3246516_3247614_+	hypothetical protein	NA	NA	NA	NA	NA
AXK10618.1|3247632_3248496_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
AXK10619.1|3248507_3249290_+	ABC transporter permease	NA	NA	NA	NA	NA
AXK10620.1|3249286_3250405_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
AXK10621.1|3250401_3251934_+	long-chain fatty acid--CoA ligase	NA	NA	NA	NA	NA
AXK10622.1|3251974_3252982_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
AXK10623.1|3253126_3253849_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AXK10624.1|3253864_3254887_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AXK10625.1|3255203_3255938_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AXK10626.1|3256022_3257768_+	acetolactate synthase catalytic subunit	NA	NA	NA	NA	NA
AXK10627.1|3257764_3258517_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
AXK10628.1|3258561_3259518_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK10629.1|3259606_3260173_+	hypothetical protein	NA	NA	NA	NA	NA
AXK10630.1|3260180_3261041_-	D-amino-acid transaminase	NA	NA	NA	NA	NA
AXK10631.1|3261070_3261814_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.5e-32
AXK10632.1|3261830_3262514_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
AXK10633.1|3263351_3264266_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK10634.1|3264330_3265239_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXK10635.1|3265329_3266754_-	TolC family protein	NA	NA	NA	NA	NA
AXK10636.1|3266755_3268078_-	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA	NA
AXK10637.1|3268074_3270213_-	cyclolysin secretion/processing ATP-binding protein CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
AXK10638.1|3270290_3275411_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
AXK11560.1|3275597_3275777_-	hypothetical protein	NA	NA	NA	NA	NA
AXK10639.1|3275859_3276447_+	toxin-activating lysine-acyltransferase	NA	NA	NA	NA	NA
AXK10640.1|3276462_3277944_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AXK10641.1|3277998_3279852_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AXK10642.1|3280113_3281451_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
AXK10643.1|3281485_3283483_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
AXK10644.1|3283500_3285549_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
AXK10645.1|3285679_3286546_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXK10646.1|3286814_3287780_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
AXK10647.1|3287894_3289043_-	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
AXK10648.1|3289467_3289779_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
AXK10649.1|3289812_3290073_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
AXK10650.1|3290222_3291356_+	GTPase ObgE	NA	NA	NA	NA	NA
AXK10651.1|3291426_3292563_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
AXK10652.1|3292728_3293523_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AXK10653.1|3293585_3294029_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AXK10654.1|3294144_3295095_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK10655.1|3295081_3295270_-	hypothetical protein	NA	NA	NA	NA	NA
AXK10656.1|3295217_3295625_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AXK10657.1|3295697_3297893_+	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
AXK10658.1|3298113_3299064_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK10659.1|3299023_3299548_-	RNA polymerase subunit sigma	NA	NA	NA	NA	NA
AXK10660.1|3299679_3300651_+	FecR family protein	NA	NA	NA	NA	NA
AXK11561.1|3300770_3303215_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
AXK10661.1|3303230_3303821_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
AXK10662.1|3304064_3305015_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
CP031113	Bordetella pertussis strain UK39 chromosome, complete genome	4108152	3320458	3420569	4108152	terminase,tail,tRNA,transposase	uncultured_Caudovirales_phage(13.79%)	109	NA	NA
AXK10676.1|3320458_3321409_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK10677.1|3322140_3322518_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
AXK10678.1|3322502_3323204_-	hypothetical protein	NA	NA	NA	NA	NA
AXK10679.1|3323347_3324040_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
AXK10680.1|3324039_3325143_-	aminoglycoside phosphotransferase	NA	NA	NA	NA	NA
AXK10681.1|3325252_3327625_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
AXK10682.1|3327621_3329181_+	chaperone SurA	NA	NA	NA	NA	NA
AXK10683.1|3329205_3330003_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
AXK10684.1|3330034_3331180_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
AXK10685.1|3331284_3332727_+	pyruvate kinase	NA	NA	NA	NA	NA
AXK11562.1|3332729_3333818_-	hypothetical protein	NA	NA	NA	NA	NA
AXK10686.1|3336096_3337047_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK10687.1|3337033_3337252_-	hypothetical protein	NA	NA	NA	NA	NA
AXK10688.1|3338176_3338734_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK10689.1|3338709_3339060_-	hypothetical protein	NA	NA	NA	NA	NA
AXK10690.1|3339228_3340023_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
AXK10691.1|3340019_3341069_-	iron ABC transporter permease	NA	NA	NA	NA	NA
AXK10692.1|3341068_3341758_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
AXK10693.1|3341844_3342342_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
AXK10694.1|3342373_3343690_-	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
AXK10695.1|3343706_3344681_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
AXK10696.1|3344717_3345176_-	protein TolR	NA	NA	NA	NA	NA
AXK10697.1|3345175_3345856_-	protein TolQ	NA	NA	NA	NA	NA
AXK10698.1|3345858_3346287_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
AXK10699.1|3346339_3348070_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
AXK10700.1|3348135_3348708_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
AXK10701.1|3348688_3349375_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AXK10702.1|3349730_3350402_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
AXK10703.1|3350408_3350609_-	hypothetical protein	NA	NA	NA	NA	NA
AXK10704.1|3350951_3351233_+	hypothetical protein	NA	NA	NA	NA	NA
AXK10705.1|3351229_3351763_-	DUF2514 family protein	NA	NA	NA	NA	NA
AXK10706.1|3351744_3352296_-	lysozyme	NA	NA	NA	NA	NA
AXK10707.1|3352274_3352517_-	hypothetical protein	NA	NA	NA	NA	NA
AXK10708.1|3352521_3353334_-	hypothetical protein	NA	NA	NA	NA	NA
AXK10709.1|3353333_3353597_-	hypothetical protein	NA	NA	NA	NA	NA
AXK10710.1|3353815_3354232_-	hypothetical protein	NA	NA	NA	NA	NA
AXK10711.1|3354236_3358193_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
AXK10712.1|3358185_3358575_-	peptidoglycan endopeptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
AXK10713.1|3358571_3359105_-	DUF1833 domain-containing protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
AXK10714.1|3359172_3359532_-	hypothetical protein	NA	NA	NA	NA	NA
AXK10715.1|3359541_3362154_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
AXK10716.1|3362179_3362470_-	hypothetical protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
AXK10717.1|3362487_3362817_-	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
AXK10718.1|3362826_3363345_-|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
AXK10719.1|3363599_3364100_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
AXK10720.1|3364107_3364530_-	hypothetical protein	NA	NA	NA	NA	NA
AXK10721.1|3364526_3364925_-	HK97 gp10 family phage protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
AXK10722.1|3364921_3365317_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
AXK10723.1|3365316_3365517_-	hypothetical protein	NA	NA	NA	NA	NA
AXK10724.1|3365518_3366001_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
AXK10725.1|3366063_3366315_-	hypothetical protein	NA	NA	NA	NA	NA
AXK10726.1|3366324_3366972_-	hypothetical protein	NA	R9TJ64	Synechococcus_phage	71.1	2.7e-65
AXK10727.1|3366989_3367940_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK10728.1|3368368_3368971_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
AXK10729.1|3369093_3369336_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
AXK11563.1|3369341_3370397_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
AXK10730.1|3370425_3371844_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
AXK10731.1|3371846_3373124_-|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
AXK10732.1|3373110_3373560_-|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	5.2e-39
AXK10733.1|3374235_3375186_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK10734.1|3375203_3375425_+	hypothetical protein	NA	NA	NA	NA	NA
AXK10735.1|3375439_3376138_+	hypothetical protein	NA	NA	NA	NA	NA
AXK10736.1|3376130_3376451_+	hypothetical protein	NA	NA	NA	NA	NA
AXK11564.1|3376930_3377542_+	LexA family transcriptional repressor	NA	NA	NA	NA	NA
AXK10737.1|3377607_3377820_+	hypothetical protein	NA	NA	NA	NA	NA
AXK10738.1|3378071_3379022_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK10739.1|3379120_3380194_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
AXK10740.1|3380361_3381156_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK10741.1|3381195_3381720_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
AXK10742.1|3381712_3383455_-	nitrite/sulfite reductase	NA	NA	NA	NA	NA
AXK10743.1|3383664_3384423_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
AXK10744.1|3384425_3385133_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
AXK10745.1|3385149_3386031_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AXK10746.1|3386041_3386800_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AXK11565.1|3386768_3387524_+	hypothetical protein	NA	NA	NA	NA	NA
AXK10747.1|3387593_3389012_+	amidase	NA	NA	NA	NA	NA
AXK10748.1|3389033_3389684_-	carbonic anhydrase	NA	NA	NA	NA	NA
AXK10749.1|3389817_3390153_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
AXK10750.1|3390240_3391191_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK10751.1|3391267_3393088_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
AXK10752.1|3393092_3394166_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
AXK10753.1|3394288_3395257_+	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
AXK10754.1|3395330_3396242_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
AXK10755.1|3396260_3396833_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
AXK10756.1|3396913_3397462_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
AXK10757.1|3397461_3399051_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
AXK10758.1|3399120_3399360_-	Fis family transcriptional regulator	NA	NA	NA	NA	NA
AXK10759.1|3399400_3400432_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
AXK10760.1|3400491_3401673_-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
AXK10761.1|3401769_3402222_+	hypothetical protein	NA	NA	NA	NA	NA
AXK10762.1|3402231_3403572_-	peptidase M24 family protein	NA	NA	NA	NA	NA
AXK10763.1|3403888_3404926_+	sodium:calcium antiporter	NA	NA	NA	NA	NA
AXK10764.1|3405307_3405667_+	hypothetical protein	NA	NA	NA	NA	NA
AXK11566.1|3405750_3406692_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AXK10765.1|3406766_3407717_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK10766.1|3408010_3409105_+	porin	NA	NA	NA	NA	NA
AXK10767.1|3409186_3410068_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
AXK10768.1|3410089_3410929_-	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
AXK10769.1|3411004_3412522_+	peptidase	NA	NA	NA	NA	NA
AXK10770.1|3412618_3413719_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
AXK10771.1|3413735_3414158_-	DUF4440 domain-containing protein	NA	NA	NA	NA	NA
AXK10772.1|3414180_3414393_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
AXK10773.1|3414439_3415360_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
AXK11567.1|3415623_3416292_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AXK10774.1|3416294_3416624_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
AXK10775.1|3416830_3418264_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
AXK10776.1|3418275_3418659_-	thioredoxin	NA	NA	NA	NA	NA
AXK10777.1|3418720_3419521_+	hypothetical protein	NA	NA	NA	NA	NA
AXK10778.1|3419618_3420569_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
CP031113	Bordetella pertussis strain UK39 chromosome, complete genome	4108152	3708192	3841111	4108152	integrase,tRNA,transposase	uncultured_Mediterranean_phage(10.34%)	117	3756145:3756204	3845559:3846612
AXK11024.1|3708192_3709143_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK11025.1|3709139_3709775_-	transporter	NA	NA	NA	NA	NA
AXK11026.1|3709904_3710804_+	LysR family transcriptional regulator ArgP	NA	NA	NA	NA	NA
AXK11027.1|3710899_3711391_+	copper chaperone PCu(A)C	NA	NA	NA	NA	NA
AXK11028.1|3711437_3712403_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK11029.1|3713536_3714778_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	24.9	1.9e-14
AXK11030.1|3714891_3715908_+	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	43.8	3.5e-75
AXK11031.1|3715942_3716419_-	hypothetical protein	NA	NA	NA	NA	NA
AXK11032.1|3716561_3717470_-	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
AXK11033.1|3717583_3718696_-	DNA-protecting protein DprA	NA	S6BFL3	Thermus_phage	35.0	1.9e-21
AXK11034.1|3718796_3719330_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AXK11035.1|3719418_3720669_+	kynureninase	NA	NA	NA	NA	NA
AXK11036.1|3720770_3721283_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	43.3	8.5e-22
AXK11037.1|3721380_3722331_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK11038.1|3722396_3723335_+|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	35.7	1.4e-09
AXK11039.1|3723357_3723984_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
AXK11040.1|3723980_3724637_-	HAD family hydrolase	NA	NA	NA	NA	NA
AXK11041.1|3724633_3725236_-	hypothetical protein	NA	NA	NA	NA	NA
AXK11042.1|3725242_3725869_-	TIGR00730 family Rossman fold protein	NA	A0A2I2L3F0	Orpheovirus	23.3	1.5e-07
AXK11043.1|3726010_3726580_+	bacterioferritin	NA	NA	NA	NA	NA
AXK11044.1|3726650_3727970_-	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA	NA
AXK11045.1|3728076_3728268_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
AXK11046.1|3728519_3729809_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
AXK11047.1|3729963_3730959_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK11048.1|3731043_3731718_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AXK11049.1|3731714_3732665_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK11050.1|3732651_3732834_-	hypothetical protein	NA	NA	NA	NA	NA
AXK11051.1|3732826_3734068_+	ornithine--oxo-acid transaminase	NA	A0A1V0SKB7	Klosneuvirus	25.2	4.0e-25
AXK11052.1|3734064_3735009_+	arginase	NA	A0A0N9R043	Chrysochromulina_ericina_virus	33.3	9.5e-27
AXK11053.1|3735127_3736078_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK11054.1|3736037_3736967_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK11055.1|3737020_3737356_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
AXK11056.1|3737400_3738165_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AXK11057.1|3738188_3738929_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AXK11058.1|3738936_3740511_-	long-chain fatty acid--CoA ligase	NA	A0A2K9L3I8	Tupanvirus	22.6	2.0e-13
AXK11059.1|3740524_3741502_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK11060.1|3741774_3742374_-	ureidoglycolate hydrolase	NA	NA	NA	NA	NA
AXK11061.1|3742407_3749310_-	autotransporter BatB	NA	NA	NA	NA	NA
AXK11062.1|3749756_3749888_-	entericidin, EcnA/B family	NA	NA	NA	NA	NA
AXK11063.1|3749919_3750081_-	hypothetical protein	NA	NA	NA	NA	NA
AXK11064.1|3750153_3750360_-	DUF3596 domain-containing protein	NA	NA	NA	NA	NA
AXK11065.1|3751364_3752024_+	HAD family hydrolase	NA	NA	NA	NA	NA
AXK11066.1|3752051_3753197_+	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
AXK11067.1|3753337_3753673_+	DUF1508 domain-containing protein	NA	NA	NA	NA	NA
AXK11068.1|3753747_3754608_-	prohibitin family protein	NA	A0A2C9D0H9	Yersinia_phage	53.6	1.7e-51
AXK11069.1|3754871_3755573_-	glutathione S-transferase	NA	NA	NA	NA	NA
AXK11070.1|3755742_3756138_+	RidA family protein	NA	NA	NA	NA	NA
3756145:3756204	attL	GCTAGGTGTGAAGATTCAATAGGTTGTATGCATGGTTCATCCGAACCGGATTTGAGAAAC	NA	NA	NA	NA
AXK11071.1|3756246_3757197_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK11072.1|3757207_3757849_+	hypothetical protein	NA	NA	NA	NA	NA
AXK11073.1|3758015_3758258_+	hypothetical protein	NA	NA	NA	NA	NA
AXK11074.1|3758355_3759306_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK11075.1|3759341_3759809_+	hypothetical protein	NA	Q3HQX1	Burkholderia_phage	71.3	2.1e-43
AXK11076.1|3760042_3760420_+	hypothetical protein	NA	NA	NA	NA	NA
AXK11077.1|3760416_3760599_+	hypothetical protein	NA	NA	NA	NA	NA
AXK11078.1|3760602_3761589_+	DNA recombinase	NA	H9C0R8	Aeromonas_phage	57.3	2.0e-67
AXK11079.1|3761585_3762233_+	exonuclease	NA	A0A0U2BXF3	Paracoccus_phage	41.4	2.0e-31
AXK11080.1|3762290_3762818_+	hypothetical protein	NA	NA	NA	NA	NA
AXK11081.1|3762851_3764039_+	hypothetical protein	NA	A0A291L9X3	Bordetella_phage	37.8	1.5e-24
AXK11082.1|3764028_3764391_+	hypothetical protein	NA	A0A0H5ARN8	Pseudomonas_phage	47.9	1.8e-13
AXK11083.1|3764383_3764503_+	hypothetical protein	NA	NA	NA	NA	NA
AXK11084.1|3764503_3764704_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AXK11085.1|3764700_3765690_-|integrase	site-specific integrase	integrase	A0A1B1P9F9	Acinetobacter_phage	44.4	4.4e-75
AXK11086.1|3767176_3769147_-	DUF3120 domain-containing protein	NA	NA	NA	NA	NA
AXK11087.1|3769388_3769787_+	hypothetical protein	NA	NA	NA	NA	NA
AXK11088.1|3769795_3770719_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXK11089.1|3771175_3772126_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK11090.1|3772356_3774048_-	membrane protein insertase YidC	NA	NA	NA	NA	NA
AXK11091.1|3774096_3774369_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	52.2	7.0e-15
AXK11092.1|3774365_3774737_-	ribonuclease P protein component	NA	NA	NA	NA	NA
AXK11093.1|3774832_3774967_-	50S ribosomal protein L34	NA	NA	NA	NA	NA
AXK11094.1|3775372_3776782_+	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
AXK11095.1|3776778_3777894_+	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	32.6	1.6e-41
AXK11096.1|3777988_3780442_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	34.8	2.3e-112
AXK11097.1|3780560_3781352_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AXK11098.1|3781471_3782899_+	amidase	NA	NA	NA	NA	NA
AXK11578.1|3782937_3783909_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK11099.1|3784327_3785491_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
AXK11100.1|3785578_3786424_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AXK11101.1|3787979_3788930_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK11102.1|3789484_3789859_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
AXK11103.1|3789933_3790992_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AXK11104.1|3791015_3791966_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK11105.1|3794846_3796016_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
AXK11579.1|3796116_3797724_+	methylcrotonoyl-CoA carboxylase	NA	A0A1B2ITV7	Pike_perch_iridovirus	57.3	5.4e-22
AXK11106.1|3797770_3799792_+	acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha	NA	NA	NA	NA	NA
AXK11107.1|3799820_3800066_-	DUF1653 domain-containing protein	NA	NA	NA	NA	NA
AXK11108.1|3800079_3801270_-	acetylornithine transaminase	NA	A0A1V0SKB7	Klosneuvirus	26.7	4.4e-21
AXK11109.1|3801465_3802431_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK11110.1|3802453_3803593_-	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
AXK11111.1|3803804_3804767_+	immunogenic protein	NA	NA	NA	NA	NA
AXK11112.1|3804890_3806915_+	TRAP transporter permease	NA	NA	NA	NA	NA
AXK11113.1|3807111_3809355_+	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA	NA
AXK11114.1|3809633_3810092_+	DUF494 domain-containing protein	NA	NA	NA	NA	NA
AXK11115.1|3811019_3813641_-	DUF4401 domain-containing protein	NA	NA	NA	NA	NA
AXK11116.1|3813704_3816332_+	DNA topoisomerase III	NA	A0A0G2YA05	Acanthamoeba_polyphaga_mimivirus	25.4	6.1e-23
AXK11117.1|3816483_3817548_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK11118.1|3817544_3818318_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.9	8.1e-24
AXK11119.1|3818326_3819160_+	ABC transporter permease	NA	NA	NA	NA	NA
AXK11120.1|3819172_3819952_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
AXK11580.1|3819986_3821459_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
AXK11121.1|3821486_3822245_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
AXK11122.1|3822300_3824151_-	biosynthetic-type acetolactate synthase large subunit	NA	E4WLQ6	Ostreococcus_tauri_virus	30.4	2.2e-59
AXK11123.1|3824244_3824721_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AXK11124.1|3824737_3825658_-	bestrophin	NA	NA	NA	NA	NA
AXK11125.1|3825764_3826265_+	SET domain-containing protein	NA	NA	NA	NA	NA
AXK11126.1|3826638_3827331_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	41.6	6.3e-36
AXK11127.1|3827638_3828589_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK11128.1|3828585_3832359_-	methionine synthase	NA	A0A140XBC7	Dickeya_phage	50.8	8.6e-10
AXK11129.1|3832695_3834585_+	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	30.8	7.6e-07
AXK11130.1|3834596_3835490_+	cobalamin-binding protein	NA	NA	NA	NA	NA
AXK11131.1|3835515_3836391_+	thiazole synthase	NA	NA	NA	NA	NA
AXK11132.1|3836387_3837239_+	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
AXK11133.1|3837300_3837981_+	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	34.8	3.5e-15
AXK11134.1|3837984_3838344_+	hypothetical protein	NA	NA	NA	NA	NA
AXK11135.1|3838344_3839304_+	hypothetical protein	NA	NA	NA	NA	NA
AXK11136.1|3839324_3839813_-	D-beta-D-heptose 1-phosphate adenylyltransferase	NA	A0A1B1IUK5	uncultured_Mediterranean_phage	34.1	1.6e-17
AXK11581.1|3840094_3841111_+|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
3845559:3846612	attR	GTTTCTCAAATCCGGTTCGGATGAACCATGCATACAACCTATTGAATCTTCACACCTAGCGCTGAAGGGCCTCGTGCTAGGCCGGCCGCTATGCCGGCGCCAGTTCCACCGTCAGGTGCCTGACTTCGTGGATCGACGACACGCGTTCCCGTATCTGGCTGGCCGTGACTCCACGGGCAATTACCAGGGCGCCCGCGTGCGTTGCCATGTTTTCCCGCGACGCCGCGCGTCGCGCCAGGGCCACAGACCTTGCCGCCACCTTGCGGCAATGCAAAATTCGACTGCTTGCCTTTGACAGCCATGGATAACTAAGTTAAGCTGAAGGGCTTACTGCTTTATCTGCGTGCAATTTCGGCATGGCAGGTTCAAGCCGGTAATGCCCATACACCGATCGGTCTGAAGCCCGCCAACCCATGAGGGTCGGCAAAGGCTTGCGCCAGCTCCCGGAAGCATGTTGCAGGTATTTCGGGCCGGGGTGCGTCACGAGCCCTCTATCCTGGATGCATCGATCGTTGTAAGGCACCGCCGGCCTGGCCATGCAGTGTTGTACGCATTATTTGTCTGCAAGACCCGCTCTTTTACGTAAACGAACGTTTGAGGCGGTTTTGCGTGAACTGCCTCCCCCTCGCTTGGGGCCAGATTGGTCGCCGAATGCTGGGAGGGTGCGAGTACGTAAGTACTTACCAGTGGTACGTAAAAGGGATTTCAAAGGTCATGCCTACCATTAGCCAGCTCGTGCGCAAGCCGCGCGAAGTCAGCATCATCAAGAGCAAGAGCCCCGCGCTCGAGAACTGCCCGCAGCGTCGCGGCGTTTGCACTCGCGTCTACACCACCACCCCCAAGAAGCCGAACTCCGCGCTGCGTAAGGTTGCCAAGGTGCGTCTGACCAACGGTTACGAAGTCATTTCGTACATCGGCGGTGAAGGCCACAACCTGCAGGAGCACTCGGTGGTTCTGGTGCGTGGCGGTCGTGTCAAGGACTTGCCCGGTGTGCGTTATCACATCGTGCGCGGTTCCCTCGACCTGCAAGGCGTCAAGGATCGCAAACAGGCTC	NA	NA	NA	NA
>prophage 31
CP031113	Bordetella pertussis strain UK39 chromosome, complete genome	4108152	4007222	4072133	4108152	transposase	Planktothrix_phage(40.0%)	58	NA	NA
AXK11300.1|4007222_4007708_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AXK11301.1|4007926_4008907_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK11302.1|4009173_4009983_+	Pertussis toxin subunit 1	NA	NA	NA	NA	NA
AXK11303.1|4010022_4010703_+	Pertussis toxin subunit 2	NA	NA	NA	NA	NA
AXK11304.1|4010696_4011155_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
AXK11305.1|4011166_4011529_+	Pertussis toxin subunit 5	NA	NA	NA	NA	NA
AXK11306.1|4011611_4012295_+	Pertussis toxin subunit 3	NA	NA	NA	NA	NA
AXK11307.1|4012350_4012659_+	type IV secretion protein A	NA	NA	NA	NA	NA
AXK11308.1|4012677_4012992_+	type IV secretion protein B	NA	NA	NA	NA	NA
AXK11309.1|4012988_4015463_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
AXK11310.1|4015470_4016862_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
AXK11311.1|4016858_4017044_+	type IV secretion protein I	NA	NA	NA	NA	NA
AXK11312.1|4017022_4017724_+	type IV secretion protein E	NA	NA	NA	NA	NA
AXK11313.1|4017720_4018542_+	P-type conjugative transfer protein VirB9	NA	NA	NA	NA	NA
AXK11590.1|4018522_4019647_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
AXK11314.1|4019639_4020659_+	type IV secretion protein H	NA	NA	NA	NA	NA
AXK11315.1|4020864_4021899_-	DMT family transporter	NA	NA	NA	NA	NA
AXK11591.1|4021999_4022791_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AXK11316.1|4022873_4023248_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
AXK11317.1|4023225_4024635_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
AXK11318.1|4024627_4026010_+	DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
AXK11319.1|4026344_4027949_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK11320.1|4027984_4028998_+	ABC transporter permease	NA	NA	NA	NA	NA
AXK11321.1|4029008_4029935_+	ABC transporter permease	NA	NA	NA	NA	NA
AXK11322.1|4030325_4031276_-|transposase	IS481 family transposase IS481	transposase	NA	NA	NA	NA
AXK11323.1|4031445_4032672_+	bifunctional glutamate N-acetyltransferase/amino-acid N-acetyltransferase	NA	NA	NA	NA	NA
AXK11324.1|4032871_4033738_+	ATP-binding protein	NA	NA	NA	NA	NA
AXK11325.1|4033730_4034693_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
AXK11326.1|4034793_4035744_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AXK11327.1|4035842_4036793_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK11328.1|4036891_4037842_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK11329.1|4037838_4039332_-	RND transporter	NA	NA	NA	NA	NA
AXK11330.1|4039328_4042436_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AXK11331.1|4042432_4045501_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AXK11332.1|4045497_4046748_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AXK11333.1|4046928_4047690_-	cell division protein ZapD	NA	NA	NA	NA	NA
AXK11334.1|4047722_4048373_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
AXK11335.1|4048375_4049215_-	prepilin peptidase	NA	NA	NA	NA	NA
AXK11336.1|4049455_4050199_+	hypothetical protein	NA	NA	NA	NA	NA
AXK11337.1|4050281_4050629_-	LuxR family transcriptional regulator	NA	NA	NA	NA	NA
AXK11338.1|4050726_4051569_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
AXK11339.1|4051613_4052501_-	segregation/condensation protein A	NA	NA	NA	NA	NA
AXK11340.1|4052527_4052716_-	DUF3460 family protein	NA	NA	NA	NA	NA
AXK11341.1|4052813_4054271_+	MFS transporter	NA	NA	NA	NA	NA
AXK11342.1|4054257_4055784_+	glycerol kinase	NA	NA	NA	NA	NA
AXK11343.1|4055802_4056270_-	hypothetical protein	NA	NA	NA	NA	NA
AXK11344.1|4056269_4057292_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK11345.1|4057412_4058153_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
AXK11346.1|4058207_4059308_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AXK11347.1|4059309_4060500_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AXK11348.1|4060619_4061636_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
AXK11349.1|4061954_4062626_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
AXK11350.1|4062622_4063531_+	ABC transporter permease	NA	NA	NA	NA	NA
AXK11351.1|4063742_4064390_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
AXK11352.1|4068241_4069318_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
AXK11353.1|4069328_4070138_-	transcriptional regulator	NA	NA	NA	NA	NA
AXK11354.1|4070227_4071001_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AXK11355.1|4071182_4072133_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
