The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP031289	Bordetella pertussis strain UK36 chromosome, complete genome	4107923	0	70032	4107923	protease,tRNA,transposase	Natrialba_phage(12.5%)	59	NA	NA
AXK00887.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
AXK00888.1|1916_2609_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA	NA
AXK00889.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
AXK00890.1|3409_4171_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AXK00891.1|4214_5132_+	ParB/RepB/Spo0J family partition protein	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
AXK00892.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
AXK00893.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
AXK00894.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
AXK00895.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
AXK00896.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
AXK00897.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
AXK00898.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
AXK00899.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
AXK00900.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
AXK04250.1|20126_20531_-	lipoprotein	NA	NA	NA	NA	NA
AXK00901.1|20771_21947_+	hypothetical protein	NA	NA	NA	NA	NA
AXK00902.1|24352_25459_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA	NA
AXK00903.1|26470_27286_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AXK00904.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK00905.1|28313_28649_-	CoA transferase	NA	NA	NA	NA	NA
AXK00906.1|28673_29108_-	hypothetical protein	NA	NA	NA	NA	NA
AXK00907.1|29140_30367_-	thiolase family protein	NA	NA	NA	NA	NA
AXK00908.1|30363_30861_-	dehydratase	NA	NA	NA	NA	NA
AXK04251.1|31068_31977_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXK00909.1|32162_33005_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AXK00910.1|33047_34469_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AXK00911.1|34624_35575_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK00912.1|35571_36762_-	MFS transporter	NA	NA	NA	NA	NA
AXK00913.1|36948_37923_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
AXK00914.1|37924_40063_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AXK00915.1|40059_40599_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
AXK00916.1|40602_41331_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AXK00917.1|41317_42211_+	M48 family peptidase	NA	NA	NA	NA	NA
AXK00918.1|42281_42677_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
AXK00919.1|42686_43217_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
AXK00920.1|43661_44612_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK00921.1|45111_45747_+	hypothetical protein	NA	NA	NA	NA	NA
AXK00922.1|45718_45955_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AXK00923.1|46082_46976_+	AEC family transporter	NA	NA	NA	NA	NA
AXK00924.1|48145_49393_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
AXK00925.1|49389_50004_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
AXK00926.1|50139_51090_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK00927.1|51132_52389_+	muropeptide transporter	NA	NA	NA	NA	NA
AXK00928.1|53620_54355_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
AXK00929.1|54360_54951_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
AXK00930.1|54975_55665_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
AXK00931.1|55661_56423_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AXK00932.1|56502_57402_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK00933.1|57495_58446_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK00934.1|59245_60472_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
AXK00935.1|60471_60891_-	transcriptional regulator	NA	NA	NA	NA	NA
AXK00936.1|61074_62016_-	hypothetical protein	NA	NA	NA	NA	NA
AXK00937.1|62439_63276_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK00938.1|63470_64052_-|protease	protease	protease	NA	NA	NA	NA
AXK00939.1|64064_64382_-	ferredoxin	NA	NA	NA	NA	NA
AXK00940.1|64485_65544_-	oxidoreductase	NA	NA	NA	NA	NA
AXK00941.1|65578_66850_-	TRAP transporter large permease	NA	NA	NA	NA	NA
AXK00942.1|67479_68661_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK00943.1|69081_70032_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
CP031289	Bordetella pertussis strain UK36 chromosome, complete genome	4107923	77630	136102	4107923	tRNA,transposase	Planktothrix_phage(22.22%)	54	NA	NA
AXK00950.1|77630_78581_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK04253.1|78654_79599_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AXK00951.1|79595_81470_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
AXK00952.1|82817_83522_-	DUF2837 family protein	NA	NA	NA	NA	NA
AXK00953.1|83518_84625_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
AXK00954.1|84886_85480_-	sugar transferase	NA	NA	NA	NA	NA
AXK00955.1|85476_86709_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
AXK00956.1|86726_87986_-	glycosyltransferase WbuB	NA	NA	NA	NA	NA
AXK00957.1|88009_89098_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
AXK00958.1|89105_90206_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
AXK00959.1|90209_90785_-	N-acetyltransferase	NA	NA	NA	NA	NA
AXK00960.1|90788_91841_-	gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
AXK04254.1|91971_92979_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
AXK00961.1|92980_94267_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
AXK00962.1|94283_94439_-	hypothetical protein	NA	NA	NA	NA	NA
AXK00963.1|94463_95267_-	type III pantothenate kinase	NA	NA	NA	NA	NA
AXK00964.1|95263_96130_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
AXK00965.1|96198_97335_+	ABC transporter permease	NA	NA	NA	NA	NA
AXK00966.1|97334_98174_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
AXK00967.1|99106_99709_+	hypothetical protein	NA	NA	NA	NA	NA
AXK00968.1|99738_100392_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AXK00969.1|100524_101781_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
AXK00970.1|101783_102728_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
AXK00971.1|102803_103079_+	DUF493 family protein	NA	NA	NA	NA	NA
AXK00972.1|103086_103749_+	octanoyltransferase	NA	NA	NA	NA	NA
AXK00973.1|103810_104812_+	lipoyl synthase	NA	NA	NA	NA	NA
AXK00974.1|104826_105375_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
AXK00975.1|105432_106329_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
AXK00976.1|106325_107387_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
AXK00977.1|107422_108373_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AXK00978.1|109271_110465_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
AXK00979.1|110546_111176_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
AXK00980.1|111237_111921_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
AXK00981.1|111930_113613_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
AXK04255.1|113900_114248_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
AXK00982.1|114338_114656_+	hypothetical protein	NA	NA	NA	NA	NA
AXK00983.1|114938_115955_+|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AXK00984.1|116030_116831_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AXK00985.1|116827_117703_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
AXK00986.1|117713_119006_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK00987.1|119048_120089_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
AXK00988.1|120194_121016_-	phosphodiesterase	NA	NA	NA	NA	NA
AXK00989.1|121116_122067_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK00990.1|122165_123071_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
AXK00991.1|123067_123901_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
AXK04256.1|124737_125748_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
AXK04257.1|125744_126134_-	hypothetical protein	NA	NA	NA	NA	NA
AXK00992.1|127027_128281_+	amidase	NA	NA	NA	NA	NA
AXK00993.1|128371_130072_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
AXK00994.1|130498_131146_-	hypothetical protein	NA	NA	NA	NA	NA
AXK04258.1|131144_132584_+	RNA polymerase sigma-54 factor	NA	NA	NA	NA	NA
AXK00995.1|132676_132979_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
AXK00996.1|133006_133885_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXK00997.1|135151_136102_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
CP031289	Bordetella pertussis strain UK36 chromosome, complete genome	4107923	164875	225384	4107923	protease,tRNA,transposase	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
AXK01018.1|164875_165826_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK01019.1|167269_168172_-	YgcG family protein	NA	NA	NA	NA	NA
AXK01020.1|168149_168779_-	LemA family protein	NA	NA	NA	NA	NA
AXK01021.1|169109_170492_+	RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.5	5.3e-42
AXK01022.1|170525_171155_+	threonine transporter RhtB	NA	NA	NA	NA	NA
AXK01023.1|171203_172811_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
AXK01024.1|172835_173519_+	hypothetical protein	NA	NA	NA	NA	NA
AXK04261.1|173600_174077_-	bacterioferritin	NA	NA	NA	NA	NA
AXK01025.1|174283_175234_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK01026.1|176349_176877_+	META domain-containing protein	NA	NA	NA	NA	NA
AXK01027.1|176968_177784_+	META domain-containing protein	NA	NA	NA	NA	NA
AXK01028.1|177844_178579_+	sulfurtransferase	NA	NA	NA	NA	NA
AXK01029.1|178616_180695_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
AXK01030.1|180944_181217_-	hypothetical protein	NA	NA	NA	NA	NA
AXK01031.1|181315_182404_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
AXK01032.1|182407_184312_+	outer membrane protein assembly factor	NA	NA	NA	NA	NA
AXK01033.1|184308_187983_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
AXK01034.1|188043_188607_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
AXK01035.1|188614_189037_-	glyoxalase	NA	NA	NA	NA	NA
AXK01036.1|189064_189484_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
AXK04262.1|189512_189959_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
AXK01037.1|190085_190583_+	hypothetical protein	NA	NA	NA	NA	NA
AXK01038.1|190737_193008_+	lysine decarboxylase	NA	NA	NA	NA	NA
AXK01039.1|193056_194289_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AXK01040.1|194386_195337_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK01041.1|195382_196075_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.4e-83
AXK01042.1|196071_196965_+	ZIP family metal transporter	NA	NA	NA	NA	NA
AXK01043.1|197359_198460_+	aminomethyltransferase	NA	NA	NA	NA	NA
AXK01044.1|198541_198916_+	glycine cleavage system protein H	NA	NA	NA	NA	NA
AXK01045.1|198975_201840_+	glycine dehydrogenase (aminomethyl-transferring)	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
AXK01046.1|201984_202725_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AXK01047.1|202794_204006_+	CoA transferase	NA	NA	NA	NA	NA
AXK01048.1|204034_205003_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK01049.1|205615_206566_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK01050.1|206722_207046_+	PsiF repeat family protein	NA	NA	NA	NA	NA
AXK01051.1|207150_208200_-	cyclase family protein	NA	NA	NA	NA	NA
AXK01052.1|208196_209021_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
AXK01053.1|209021_209318_-	YciI family protein	NA	NA	NA	NA	NA
AXK01054.1|209343_209619_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
AXK01055.1|209675_210320_-	CoA transferase subunit B	NA	NA	NA	NA	NA
AXK01056.1|210319_211006_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
AXK04263.1|211135_211987_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AXK01057.1|212037_212763_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
AXK01058.1|212794_214144_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
AXK01059.1|214255_215188_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
AXK01060.1|215645_218441_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
AXK01061.1|219034_221977_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
AXK01062.1|222048_222768_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
AXK01063.1|222806_223355_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
AXK01064.1|223509_224409_+	virginiamycin B lyase	NA	NA	NA	NA	NA
AXK01065.1|224433_225384_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
CP031289	Bordetella pertussis strain UK36 chromosome, complete genome	4107923	233315	286901	4107923	protease,tRNA,transposase	Bacillus_phage(25.0%)	46	NA	NA
AXK01073.1|233315_234266_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK01074.1|234352_235303_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AXK01075.1|235299_236250_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK01076.1|236347_237145_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
AXK01077.1|238094_238505_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
AXK01078.1|239526_240270_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AXK01079.1|240313_241357_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK01080.1|241527_243630_+	hypothetical protein	NA	NA	NA	NA	NA
AXK01081.1|245040_245997_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK01082.1|246015_246507_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
AXK01083.1|246503_247859_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
AXK01084.1|247859_248558_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
AXK01085.1|248554_249256_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
AXK01086.1|249508_250558_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
AXK01087.1|250663_251605_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
AXK01088.1|251601_253491_-	DNA mismatch repair protein MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
AXK01089.1|253577_254216_+	hypothetical protein	NA	NA	NA	NA	NA
AXK04264.1|254358_255603_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.1e-17
AXK01090.1|255674_256211_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
AXK01091.1|256362_257754_+	class II fumarate hydratase	NA	NA	NA	NA	NA
AXK01092.1|257770_258751_-	AEC family transporter	NA	NA	NA	NA	NA
AXK01093.1|258886_259870_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
AXK01094.1|259934_260834_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXK01095.1|260940_262695_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AXK01096.1|262702_263827_-	CoA transferase	NA	NA	NA	NA	NA
AXK01097.1|263840_264821_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK01098.1|267061_267607_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
AXK01099.1|267690_269310_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AXK01100.1|269325_270480_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
AXK01101.1|270493_270619_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
AXK01102.1|270615_272367_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
AXK01103.1|272363_274043_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
AXK01104.1|274078_274654_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.4e-28
AXK01105.1|275796_276075_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AXK01106.1|277118_278069_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK01107.1|278345_278507_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
AXK01108.1|278514_278655_+	hypothetical protein	NA	NA	NA	NA	NA
AXK01109.1|279173_279623_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
AXK01110.1|279632_280244_-	glutathione S-transferase	NA	NA	NA	NA	NA
AXK01111.1|280402_281257_-	cytochrome c1	NA	NA	NA	NA	NA
AXK01112.1|281276_282659_-	cytochrome b	NA	NA	NA	NA	NA
AXK04265.1|282723_283365_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
AXK01113.1|283504_283963_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
AXK01114.1|283987_284764_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
AXK04266.1|284817_285954_+	PDZ domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
AXK01115.1|285950_286901_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
CP031289	Bordetella pertussis strain UK36 chromosome, complete genome	4107923	555266	614564	4107923	tRNA,transposase	Acinetobacter_phage(27.27%)	48	NA	NA
AXK01335.1|555266_556217_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK01336.1|557540_558317_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AXK01337.1|558351_560124_+	M61 family peptidase	NA	NA	NA	NA	NA
AXK01338.1|560125_561028_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
AXK01339.1|561152_561512_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
AXK01340.1|561543_562506_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
AXK01341.1|562603_563554_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK01342.1|563566_564502_-	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
AXK01343.1|564561_565401_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
AXK01344.1|565397_566567_-	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
AXK01345.1|566563_567853_-	hypothetical protein	NA	NA	NA	NA	NA
AXK01346.1|567895_568270_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
AXK01347.1|568375_569113_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
AXK01348.1|569120_569825_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AXK01349.1|570088_571609_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
AXK01350.1|571664_572228_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
AXK01351.1|572246_573278_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
AXK01352.1|573274_574063_+	indole-3-glycerol-phosphate synthase	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
AXK01353.1|574238_575228_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK01354.1|576983_577934_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK01355.1|579156_580059_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXK01356.1|580060_580915_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
AXK01357.1|580961_582071_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AXK01358.1|582081_582600_-	flavin reductase	NA	NA	NA	NA	NA
AXK01359.1|582629_583262_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
AXK01360.1|583333_583993_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
AXK01361.1|583989_585210_-	MFS transporter	NA	NA	NA	NA	NA
AXK01362.1|585478_586351_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
AXK01363.1|586506_587244_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AXK01364.1|587246_588842_-	acyl-CoA synthetase	NA	NA	NA	NA	NA
AXK04287.1|588973_589963_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK01365.1|589959_590670_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
AXK01366.1|590765_591782_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AXK01367.1|592053_592680_-	aminotransferase	NA	NA	NA	NA	NA
AXK01368.1|592735_593863_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
AXK01369.1|593868_599586_-	excinuclease ABC subunit A	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
AXK01370.1|599869_600085_+	hypothetical protein	NA	NA	NA	NA	NA
AXK01371.1|600153_601098_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
AXK01372.1|601286_602222_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
AXK01373.1|602339_603911_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK01374.1|603990_605199_+	ABC transporter permease	NA	NA	NA	NA	NA
AXK01375.1|605696_606614_+	DMT family transporter	NA	NA	NA	NA	NA
AXK01376.1|608974_609196_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
AXK01377.1|609526_610543_+|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AXK01378.1|610627_610879_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
AXK01379.1|610882_611698_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
AXK01380.1|611810_612689_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
AXK01381.1|612800_614564_-|tRNA	glutamine--tRNA ligase	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
>prophage 7
CP031289	Bordetella pertussis strain UK36 chromosome, complete genome	4107923	620718	674457	4107923	transposase	Salmonella_phage(33.33%)	47	NA	NA
AXK01385.1|620718_621669_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK01386.1|621737_622736_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK01387.1|622740_623421_-	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
AXK01388.1|623558_623951_+	OsmC family peroxiredoxin	NA	NA	NA	NA	NA
AXK01389.1|624058_625075_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AXK01390.1|625314_626100_-	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
AXK01391.1|626194_627604_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA	NA
AXK01392.1|627614_628415_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
AXK01393.1|628435_629206_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AXK01394.1|629248_629716_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
AXK01395.1|629712_630663_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK01396.1|632611_633490_-	fatty acid desaturase	NA	NA	NA	NA	NA
AXK01397.1|634416_637395_-	hypothetical protein	NA	NA	NA	NA	NA
AXK01398.1|637747_638698_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK01399.1|638694_639783_-	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA	NA
AXK01400.1|639818_640682_-	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
AXK01401.1|641821_642211_-	DNA-binding protein	NA	NA	NA	NA	NA
AXK01402.1|642214_642997_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AXK01403.1|643030_643783_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AXK01404.1|644091_645231_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK01405.1|645227_646019_+	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
AXK01406.1|646015_646765_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
AXK01407.1|646761_647634_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AXK01408.1|647633_648635_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AXK01409.1|648631_649795_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AXK01410.1|649820_650504_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AXK01411.1|650457_651792_+	phenylacetate--CoA ligase family protein	NA	NA	NA	NA	NA
AXK01412.1|651784_652879_+	CoA transferase	NA	NA	NA	NA	NA
AXK04288.1|653644_654595_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK01413.1|656535_657795_+	YeaH/YhbH family protein	NA	NA	NA	NA	NA
AXK01414.1|657791_659330_+	SpoVR family protein	NA	NA	NA	NA	NA
AXK01415.1|659326_660523_-	MFS transporter	NA	NA	NA	NA	NA
AXK01416.1|660519_661911_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AXK01417.1|661907_662924_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK01418.1|662992_664228_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AXK01419.1|664328_665123_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AXK01420.1|665492_665900_+	GFA family protein	NA	NA	NA	NA	NA
AXK01421.1|666317_666590_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
AXK01422.1|667171_668026_+	urease accessory protein UreD	NA	NA	NA	NA	NA
AXK01423.1|668126_668429_+	urease subunit gamma	NA	NA	NA	NA	NA
AXK01424.1|668455_669091_+	urease accessory protein UreJ	NA	NA	NA	NA	NA
AXK01425.1|669107_669416_+	urease subunit beta	NA	NA	NA	NA	NA
AXK01426.1|669412_671128_+	urease subunit alpha	NA	NA	NA	NA	NA
AXK01427.1|671130_671748_+	urease accessory protein UreE	NA	NA	NA	NA	NA
AXK01428.1|671848_672433_+	urease accessory protein UreF	NA	NA	NA	NA	NA
AXK01429.1|672457_673102_+	urease accessory protein UreG	NA	NA	NA	NA	NA
AXK01430.1|673506_674457_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
CP031289	Bordetella pertussis strain UK36 chromosome, complete genome	4107923	723344	763341	4107923	integrase,protease,tRNA,transposase	Pseudomonas_phage(33.33%)	29	720643:720661	740530:740548
720643:720661	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
AXK01467.1|723344_723992_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
AXK01468.1|723988_724771_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AXK01469.1|724843_725935_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
AXK01470.1|726214_727342_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
AXK01471.1|727683_728730_+	Fic family protein	NA	NA	NA	NA	NA
AXK04291.1|728740_728881_+	DEAD/DEAH box helicase	NA	NA	NA	NA	NA
AXK01472.1|728877_731997_+	restriction endonuclease	NA	NA	NA	NA	NA
AXK01473.1|731998_734950_+	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
AXK01474.1|734965_736177_+	chromosome segregation protein SMC	NA	NA	NA	NA	NA
AXK01475.1|736359_737310_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK01476.1|737326_737821_+	DUF4276 family protein	NA	NA	NA	NA	NA
AXK01477.1|737824_738082_+	hypothetical protein	NA	NA	NA	NA	NA
AXK01478.1|738106_739537_+	ATP-dependent helicase	NA	NA	NA	NA	NA
AXK01479.1|739606_739903_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	5.5e-05
AXK01480.1|740686_741637_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
740530:740548	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
AXK01481.1|742055_744620_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AXK01482.1|744664_746518_-	hypothetical protein	NA	NA	NA	NA	NA
AXK01483.1|746850_748422_+	winged helix family transcriptional regulator	NA	NA	NA	NA	NA
AXK01484.1|749862_750813_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK01485.1|750898_751639_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AXK01486.1|751865_752813_-	hypothetical protein	NA	NA	NA	NA	NA
AXK01487.1|754200_755151_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK01488.1|755343_756159_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AXK01489.1|756291_757731_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AXK01490.1|757744_758086_+	cupin domain-containing protein	NA	NA	NA	NA	NA
AXK01491.1|758140_759796_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
AXK01492.1|759947_760958_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK01493.1|761090_761864_+	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK01494.1|762390_763341_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
CP031289	Bordetella pertussis strain UK36 chromosome, complete genome	4107923	773268	821929	4107923	protease,holin,transposase	Bovine_alphaherpesvirus(10.0%)	47	NA	NA
AXK01502.1|773268_774219_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK01503.1|774356_775109_+	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
AXK01504.1|775347_777072_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	9.5e-49
AXK01505.1|777091_778351_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AXK01506.1|778365_779460_-	CCA-adding enzyme	NA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
AXK01507.1|779456_781583_-	lytic transglycosylase domain-containing protein	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.5e-14
AXK01508.1|781595_782276_+	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
AXK04295.1|782553_783927_+	MFS transporter	NA	NA	NA	NA	NA
AXK01509.1|783928_784948_+	histone deacetylase family protein	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
AXK01510.1|785011_785983_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXK01511.1|786047_786998_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK01512.1|787095_787938_-	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
AXK01513.1|787937_788273_-|holin	phage holin family protein	holin	NA	NA	NA	NA
AXK01514.1|788343_789762_-	adenosylhomocysteinase	NA	S4VPF6	Pandoravirus	29.4	8.7e-40
AXK01515.1|790041_791082_-	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
AXK01516.1|791161_791413_-	DUF1289 domain-containing protein	NA	NA	NA	NA	NA
AXK01517.1|791523_792822_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	60.9	1.6e-125
AXK01518.1|792970_793825_+	lysophospholipid acyltransferase family protein	NA	NA	NA	NA	NA
AXK01519.1|793821_794712_+	acyltransferase	NA	NA	NA	NA	NA
AXK01520.1|794754_795666_+	diaminopimelate epimerase	NA	NA	NA	NA	NA
AXK01521.1|795692_796385_+	DUF484 family protein	NA	NA	NA	NA	NA
AXK01522.1|796399_797380_+	tyrosine recombinase XerC	NA	A0A166YH27	Gordonia_phage	30.5	3.3e-14
AXK01523.1|797392_799534_-	TonB-dependent receptor	NA	NA	NA	NA	NA
AXK01524.1|799582_800551_-	nickel transporter	NA	NA	NA	NA	NA
AXK04296.1|800541_801165_-	DUF1007 family protein	NA	NA	NA	NA	NA
AXK01525.1|801170_802106_-	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK01526.1|802102_802999_-	metal ABC transporter permease	NA	NA	NA	NA	NA
AXK01527.1|802995_803718_-	metal ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	30.0	1.1e-11
AXK01528.1|803708_803909_-	hypothetical protein	NA	NA	NA	NA	NA
AXK01529.1|804046_804550_+	transcriptional repressor	NA	NA	NA	NA	NA
AXK01530.1|804826_805942_+	GTP-binding protein	NA	NA	NA	NA	NA
AXK01531.1|806084_806549_+	RNA polymerase-binding protein DksA	NA	NA	NA	NA	NA
AXK01532.1|806696_807236_+|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
AXK01533.1|807257_808592_+	HslU--HslV peptidase ATPase subunit	NA	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
AXK04297.1|808605_808911_-	RND transporter	NA	NA	NA	NA	NA
AXK01534.1|809335_809917_+	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA	NA
AXK01535.1|809997_810948_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK01536.1|811045_811996_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK01537.1|812093_813044_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK01538.1|813484_814390_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AXK01539.1|814445_816053_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
AXK01540.1|816306_817812_-	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
AXK01541.1|817826_818291_-	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
AXK01542.1|818580_819531_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK01543.1|819692_820223_+	hypothetical protein	NA	NA	NA	NA	NA
AXK01544.1|820222_820534_+	cell division protein ZapA	NA	NA	NA	NA	NA
AXK01545.1|820978_821929_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
CP031289	Bordetella pertussis strain UK36 chromosome, complete genome	4107923	1006132	1108253	4107923	transposase	Bacillus_virus(25.0%)	92	NA	NA
AXK01684.1|1006132_1007083_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK01685.1|1007185_1007848_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AXK01686.1|1007950_1008361_-	hypothetical protein	NA	NA	NA	NA	NA
AXK01687.1|1008465_1009467_+	amidase	NA	NA	NA	NA	NA
AXK01688.1|1009469_1010666_+	CoA transferase	NA	NA	NA	NA	NA
AXK01689.1|1010686_1011490_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AXK01690.1|1011570_1011867_+	histidine kinase	NA	NA	NA	NA	NA
AXK01691.1|1011897_1012461_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK04311.1|1012501_1013359_+	ABC transporter permease	NA	NA	NA	NA	NA
AXK01692.1|1013366_1014116_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
AXK01693.1|1014137_1015010_+	hypothetical protein	NA	NA	NA	NA	NA
AXK01694.1|1015038_1015818_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AXK01695.1|1015851_1016649_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AXK01696.1|1018100_1019273_+	hypothetical protein	NA	A0A2H4PQU7	Staphylococcus_phage	39.6	1.1e-59
AXK01697.1|1019303_1019696_+	RidA family protein	NA	NA	NA	NA	NA
AXK01698.1|1019689_1020550_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AXK01699.1|1020553_1021516_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AXK04312.1|1022292_1022982_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
AXK01700.1|1023842_1024793_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK01701.1|1025141_1026011_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXK01702.1|1026081_1026777_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
AXK01703.1|1026766_1027276_+	nucleoside deaminase	NA	NA	NA	NA	NA
AXK01704.1|1027272_1028493_+	MFS transporter	NA	NA	NA	NA	NA
AXK01705.1|1028440_1029343_-	transcriptional regulator GcvA	NA	NA	NA	NA	NA
AXK01706.1|1030228_1031515_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AXK01707.1|1031553_1032927_+	amidase	NA	NA	NA	NA	NA
AXK01708.1|1032965_1033667_-	riboflavin synthase	NA	NA	NA	NA	NA
AXK01709.1|1033965_1034955_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK01710.1|1035055_1035517_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AXK01711.1|1035532_1036081_-	cysteine dioxygenase	NA	NA	NA	NA	NA
AXK01712.1|1036222_1037698_-	long-chain fatty acid--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
AXK01713.1|1037803_1038895_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
AXK01714.1|1038898_1039681_-	ABC transporter permease	NA	NA	NA	NA	NA
AXK01715.1|1039690_1040479_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
AXK01716.1|1041604_1042039_-	PaaI family thioesterase	NA	NA	NA	NA	NA
AXK01717.1|1042035_1043046_-	alcohol dehydrogenase	NA	NA	NA	NA	NA
AXK01718.1|1043089_1044016_-	VOC family protein	NA	NA	NA	NA	NA
AXK01719.1|1044302_1044671_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
AXK04313.1|1044886_1045837_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK04314.1|1045818_1048308_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.3e-86
AXK01720.1|1048356_1049049_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
AXK01721.1|1049121_1050321_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
AXK01722.1|1050338_1051244_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXK01723.1|1051359_1052289_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AXK04315.1|1052314_1053661_+	MFS transporter	NA	NA	NA	NA	NA
AXK04316.1|1053688_1054438_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
AXK01724.1|1054451_1055234_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
AXK01725.1|1055426_1056377_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK01726.1|1056438_1057584_-	porin	NA	NA	NA	NA	NA
AXK01727.1|1058060_1058897_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
AXK01728.1|1058966_1059932_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXK01729.1|1059928_1060879_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK01730.1|1061263_1061806_+	hypothetical protein	NA	NA	NA	NA	NA
AXK01731.1|1062841_1063792_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK01732.1|1064033_1064402_+	hypothetical protein	NA	NA	NA	NA	NA
AXK01733.1|1064447_1065572_+	hypothetical protein	NA	NA	NA	NA	NA
AXK04317.1|1066706_1067447_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
AXK01734.1|1067550_1068171_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AXK01735.1|1068273_1069224_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AXK01736.1|1069220_1071329_-	AsmA family protein	NA	NA	NA	NA	NA
AXK01737.1|1071473_1072133_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
AXK04318.1|1072164_1072629_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
AXK01738.1|1072904_1073090_+	hypothetical protein	NA	NA	NA	NA	NA
AXK01739.1|1073141_1073894_-	DNA-binding protein	NA	NA	NA	NA	NA
AXK01740.1|1073900_1075163_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
AXK01741.1|1075204_1076443_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AXK01742.1|1077519_1078647_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
AXK01743.1|1078657_1079485_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AXK01744.1|1079471_1080338_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
AXK01745.1|1081704_1082109_-	hypothetical protein	NA	NA	NA	NA	NA
AXK01746.1|1082200_1083151_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK04319.1|1083519_1084431_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK01747.1|1084445_1085156_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AXK01748.1|1085152_1086397_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
AXK01749.1|1086398_1086833_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
AXK01750.1|1086861_1087167_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AXK01751.1|1087264_1088215_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK01752.1|1088271_1089420_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
AXK01753.1|1089500_1090451_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK01754.1|1090981_1091779_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK01755.1|1091826_1092480_-	ABC transporter permease	NA	NA	NA	NA	NA
AXK01756.1|1092436_1093525_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
AXK01757.1|1093689_1095915_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
AXK01758.1|1098192_1099089_+	inositol monophosphatase	NA	NA	NA	NA	NA
AXK01759.1|1099208_1100159_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK01760.1|1100155_1101847_-	long-chain fatty acid--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	28.1	9.4e-33
AXK01761.1|1101908_1103105_+	amidohydrolase	NA	NA	NA	NA	NA
AXK01762.1|1103118_1103997_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXK01763.1|1104103_1105150_+	YeiH family putative sulfate export transporter	NA	NA	NA	NA	NA
AXK01764.1|1105213_1105624_+	acyl-CoA thioesterase	NA	NA	NA	NA	NA
AXK01765.1|1105634_1107107_+	magnesium transporter	NA	NA	NA	NA	NA
AXK01766.1|1107302_1108253_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
CP031289	Bordetella pertussis strain UK36 chromosome, complete genome	4107923	1130544	1201499	4107923	protease,transposase	uncultured_Mediterranean_phage(25.0%)	52	NA	NA
AXK01789.1|1130544_1131495_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK01790.1|1131551_1132664_+	Ldh family oxidoreductase	NA	NA	NA	NA	NA
AXK01791.1|1135047_1135998_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK01792.1|1136587_1137364_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
AXK01793.1|1137481_1137745_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
AXK01794.1|1137845_1138850_-	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
AXK01795.1|1139050_1140652_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
AXK01796.1|1140677_1141436_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AXK01797.1|1141527_1142184_-	adenylate kinase	NA	NA	NA	NA	NA
AXK01798.1|1142274_1143039_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
AXK01799.1|1143048_1143237_-	Trm112 family protein	NA	NA	NA	NA	NA
AXK01800.1|1143292_1144336_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
AXK01801.1|1144332_1144746_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
AXK01802.1|1144742_1145363_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
AXK01803.1|1145642_1146593_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK01804.1|1146760_1148152_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
AXK01805.1|1148224_1148803_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
AXK01806.1|1148919_1150317_+	chloride channel protein EriC	NA	NA	NA	NA	NA
AXK01807.1|1150432_1151638_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
AXK01808.1|1151737_1152256_-	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
AXK01809.1|1152350_1152596_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
AXK01810.1|1152823_1153138_+|protease	ATP-dependent Clp protease adaptor ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
AXK01811.1|1153227_1158417_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
AXK04321.1|1158413_1160582_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
AXK01812.1|1160601_1162953_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.2e-164
AXK01813.1|1162957_1164277_+	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
AXK01814.1|1164295_1165969_+	MCE family protein	NA	NA	NA	NA	NA
AXK01815.1|1165973_1166642_+	lipoprotein	NA	NA	NA	NA	NA
AXK01816.1|1166798_1170620_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AXK01817.1|1170950_1171901_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK01818.1|1171922_1173068_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK01819.1|1173216_1174146_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AXK01820.1|1174142_1175231_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AXK01821.1|1175227_1176031_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
AXK01822.1|1176027_1176759_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
AXK01823.1|1176816_1178106_-	MFS transporter	NA	NA	NA	NA	NA
AXK01824.1|1178202_1178805_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AXK01825.1|1183347_1183686_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
AXK01826.1|1184354_1184660_+	hypothetical protein	NA	NA	NA	NA	NA
AXK01827.1|1186365_1187316_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK01828.1|1187312_1188644_-	MFS transporter	NA	NA	NA	NA	NA
AXK01829.1|1189883_1191905_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AXK01830.1|1191897_1192539_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
AXK01831.1|1192535_1192943_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
AXK01832.1|1192939_1193740_+	SURF1 family protein	NA	NA	NA	NA	NA
AXK01833.1|1193814_1194519_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
AXK01834.1|1194550_1195345_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
AXK01835.1|1195341_1196292_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK01836.1|1196389_1197340_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AXK01837.1|1197437_1197872_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
AXK01838.1|1197954_1200291_+	copper-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
AXK01839.1|1200482_1201499_+|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
>prophage 12
CP031289	Bordetella pertussis strain UK36 chromosome, complete genome	4107923	1242568	1324696	4107923	tRNA,transposase	Bacillus_virus(28.57%)	60	NA	NA
AXK01872.1|1242568_1243519_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK01873.1|1243606_1245259_+	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
AXK01874.1|1245269_1246058_+	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
AXK01875.1|1246057_1246528_+	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
AXK01876.1|1246602_1247916_+	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
AXK01877.1|1247969_1248575_-	fimbrial protein FimX	NA	NA	NA	NA	NA
AXK01878.1|1248891_1249842_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AXK01879.1|1249838_1250789_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK01880.1|1251048_1252077_-	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AXK01881.1|1252156_1253455_-	TRAP transporter large permease	NA	NA	NA	NA	NA
AXK01882.1|1253451_1254033_-	TRAP transporter small permease	NA	NA	NA	NA	NA
AXK01883.1|1254345_1258392_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
AXK01884.1|1266288_1267239_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK01885.1|1268378_1268852_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AXK01886.1|1268991_1269612_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AXK01887.1|1269747_1270548_+	aldolase	NA	NA	NA	NA	NA
AXK01888.1|1270602_1271694_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK01889.1|1271715_1272159_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
AXK01890.1|1272187_1272820_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
AXK01891.1|1272930_1273347_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
AXK01892.1|1273339_1274032_+	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
AXK01893.1|1274138_1274513_+	hypothetical protein	NA	NA	NA	NA	NA
AXK01894.1|1274589_1275399_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AXK01895.1|1275494_1276439_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
AXK01896.1|1276477_1277449_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK01897.1|1277539_1277977_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
AXK01898.1|1278035_1278917_-	NRDE family protein	NA	NA	NA	NA	NA
AXK01899.1|1279920_1280781_+	amidohydrolase	NA	NA	NA	NA	NA
AXK01900.1|1280813_1282196_+	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
AXK04326.1|1282192_1283212_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK01901.1|1283584_1284079_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
AXK01902.1|1284086_1284827_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AXK01903.1|1284907_1286512_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
AXK01904.1|1286551_1287361_-	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	1.6e-22
AXK01905.1|1287465_1289631_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	1.9e-14
AXK01906.1|1290511_1291324_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AXK01907.1|1291336_1291645_+	hypothetical protein	NA	NA	NA	NA	NA
AXK01908.1|1291762_1293493_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK01909.1|1293494_1294640_-	hypothetical protein	NA	NA	NA	NA	NA
AXK01910.1|1295556_1296024_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AXK01911.1|1296159_1297542_+	D-amino acid dehydrogenase small subunit	NA	NA	NA	NA	NA
AXK01912.1|1297538_1298663_+	DNA repair exonuclease	NA	NA	NA	NA	NA
AXK01913.1|1298659_1301296_+	GTP-binding protein	NA	NA	NA	NA	NA
AXK01914.1|1301710_1302661_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK01915.1|1306407_1307019_-	DUF2239 family protein	NA	NA	NA	NA	NA
AXK01916.1|1307241_1308702_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
AXK01917.1|1308798_1310391_+	GMP synthase (glutamine-hydrolyzing)	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
AXK01918.1|1310377_1310656_+	hypothetical protein	NA	NA	NA	NA	NA
AXK01919.1|1310714_1311002_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AXK01920.1|1311003_1312344_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
AXK01921.1|1312439_1313129_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AXK01922.1|1313141_1314572_+	MFS transporter	NA	NA	NA	NA	NA
AXK01923.1|1316296_1317118_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AXK01924.1|1317128_1318700_+	amidohydrolase	NA	NA	NA	NA	NA
AXK01925.1|1318728_1319706_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK01926.1|1319732_1320536_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
AXK01927.1|1320532_1321327_+	ABC transporter permease	NA	NA	NA	NA	NA
AXK01928.1|1321334_1322570_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
AXK01929.1|1322562_1322997_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
AXK01930.1|1323745_1324696_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
CP031289	Bordetella pertussis strain UK36 chromosome, complete genome	4107923	1328806	1369471	4107923	tRNA,transposase	Salmonella_phage(33.33%)	42	NA	NA
AXK01933.1|1328806_1329757_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK01934.1|1329797_1330868_+	FUSC family protein	NA	NA	NA	NA	NA
AXK04327.1|1330890_1331769_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AXK01935.1|1331940_1332912_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AXK01936.1|1333074_1333917_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXK01937.1|1334078_1334759_+	anti-sigma factor	NA	NA	NA	NA	NA
AXK01938.1|1334752_1335922_+	amine oxidase	NA	NA	NA	NA	NA
AXK01939.1|1335918_1336950_+	alcohol dehydrogenase	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
AXK01940.1|1336993_1338235_+	MFS transporter	NA	NA	NA	NA	NA
AXK01941.1|1338269_1339802_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AXK01942.1|1339882_1340506_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
AXK01943.1|1340536_1341148_+	LysE family translocator	NA	NA	NA	NA	NA
AXK01944.1|1341183_1341654_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
AXK01945.1|1342085_1343090_+	M20 family peptidase	NA	NA	NA	NA	NA
AXK01946.1|1343126_1344641_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK01947.1|1344644_1345604_+	ABC transporter permease	NA	NA	NA	NA	NA
AXK01948.1|1345632_1346436_+	ABC transporter permease	NA	NA	NA	NA	NA
AXK01949.1|1346437_1348072_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
AXK01950.1|1348155_1349217_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AXK01951.1|1349415_1349685_+	hypothetical protein	NA	NA	NA	NA	NA
AXK01952.1|1349688_1350213_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
AXK01953.1|1350627_1351578_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK01954.1|1351574_1352645_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
AXK01955.1|1352717_1353356_+	DedA family protein	NA	NA	NA	NA	NA
AXK01956.1|1353650_1353878_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AXK01957.1|1354000_1354714_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AXK01958.1|1354958_1355909_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK01959.1|1356011_1356293_+	hypothetical protein	NA	NA	NA	NA	NA
AXK01960.1|1356407_1357856_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AXK01961.1|1357965_1358916_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK01962.1|1358912_1359362_-	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
AXK01963.1|1359555_1360506_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK01964.1|1360841_1361039_+	50S ribosomal protein L35	NA	NA	NA	NA	NA
AXK01965.1|1361054_1361414_+	50S ribosomal protein L20	NA	NA	NA	NA	NA
AXK01966.1|1361488_1362511_+|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
AXK01967.1|1362523_1364941_+|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AXK01968.1|1364946_1365288_+	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.8e-13
AXK01969.1|1365346_1365757_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AXK01970.1|1366256_1367348_-	hypothetical protein	NA	NA	NA	NA	NA
AXK01971.1|1367531_1368128_+	lipoprotein	NA	NA	NA	NA	NA
AXK01972.1|1368227_1368410_-	hypothetical protein	NA	NA	NA	NA	NA
AXK01973.1|1368520_1369471_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
CP031289	Bordetella pertussis strain UK36 chromosome, complete genome	4107923	1743089	1800366	4107923	tRNA,transposase	Klosneuvirus(13.33%)	51	NA	NA
AXK02288.1|1743089_1744040_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK02289.1|1744137_1746738_-	DUF3394 domain-containing protein	NA	NA	NA	NA	NA
AXK02290.1|1746844_1747849_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK02291.1|1747957_1749298_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
AXK02292.1|1749338_1750367_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
AXK02293.1|1750562_1751108_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AXK02294.1|1751104_1751665_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
AXK02295.1|1751763_1752714_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK02296.1|1752751_1753339_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
AXK02297.1|1753356_1753740_-	thioredoxin	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
AXK02298.1|1755099_1756392_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
AXK02299.1|1756526_1757567_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
AXK02300.1|1757664_1758681_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AXK02301.1|1758948_1759596_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
AXK02302.1|1759721_1760480_+	5'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
AXK04346.1|1760554_1761244_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.2e-32
AXK02303.1|1761261_1762146_+	LysM peptidoglycan-binding domain-containing protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
AXK02304.1|1762142_1762922_+	3'-5' exonuclease	NA	NA	NA	NA	NA
AXK02305.1|1762948_1763626_+	hypothetical protein	NA	NA	NA	NA	NA
AXK04347.1|1763914_1764667_+	hypothetical protein	NA	NA	NA	NA	NA
AXK02306.1|1764785_1766186_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
AXK02307.1|1766209_1766608_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
AXK02308.1|1766783_1766984_+	copper chaperone	NA	NA	NA	NA	NA
AXK02309.1|1767122_1767851_+	glutaredoxin	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
AXK02310.1|1767984_1769400_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
AXK02311.1|1769403_1770267_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
AXK02312.1|1770279_1771029_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
AXK02313.1|1771211_1773227_+	peptidylprolyl isomerase	NA	NA	NA	NA	NA
AXK04348.1|1773208_1773757_-	arylesterase	NA	NA	NA	NA	NA
AXK02314.1|1773833_1774553_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.6	1.4e-22
AXK02315.1|1774651_1775602_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK02316.1|1775750_1776089_-	BON domain-containing protein	NA	NA	NA	NA	NA
AXK02317.1|1776146_1776308_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
AXK02318.1|1776339_1776540_-	CsbD family protein	NA	NA	NA	NA	NA
AXK02319.1|1776805_1779379_-	cyanophycin synthetase	NA	NA	NA	NA	NA
AXK02320.1|1779449_1782023_-	cyanophycin synthetase	NA	NA	NA	NA	NA
AXK02321.1|1784549_1785038_+	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
AXK02322.1|1785129_1786281_-	N-acetyltransferase	NA	NA	NA	NA	NA
AXK02323.1|1786334_1787156_+	DUF455 family protein	NA	NA	NA	NA	NA
AXK02324.1|1787194_1788424_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
AXK02325.1|1788552_1788993_+	DUF937 domain-containing protein	NA	NA	NA	NA	NA
AXK02326.1|1788937_1789117_+	hypothetical protein	NA	NA	NA	NA	NA
AXK02327.1|1789103_1790054_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK02328.1|1790050_1790524_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AXK02329.1|1790685_1791624_+	hypothetical protein	NA	NA	NA	NA	NA
AXK02330.1|1791625_1792834_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
AXK02331.1|1792938_1793445_-	lipoprotein signal peptidase	NA	NA	NA	NA	NA
AXK02332.1|1793447_1796309_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
AXK02333.1|1796298_1797264_-	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
AXK02334.1|1797323_1799318_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
AXK02335.1|1799415_1800366_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
CP031289	Bordetella pertussis strain UK36 chromosome, complete genome	4107923	1851614	1910881	4107923	protease,tRNA,transposase	Klosneuvirus(40.0%)	51	NA	NA
AXK02382.1|1851614_1852565_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK02383.1|1852688_1853498_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AXK02384.1|1853697_1854648_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK02385.1|1855921_1857139_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
AXK02386.1|1858195_1859098_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AXK02387.1|1859174_1860047_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
AXK02388.1|1860177_1860546_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
AXK02389.1|1860603_1861650_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
AXK02390.1|1861845_1863102_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
AXK02391.1|1863106_1864444_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
AXK02392.1|1864593_1865550_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXK02393.1|1865652_1866585_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
AXK02394.1|1866700_1867021_+	hypothetical protein	NA	NA	NA	NA	NA
AXK02395.1|1867022_1867373_+	hypothetical protein	NA	NA	NA	NA	NA
AXK02396.1|1867420_1868995_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK02397.1|1869047_1869992_+	ABC transporter permease	NA	NA	NA	NA	NA
AXK02398.1|1870009_1870840_+	ABC transporter permease	NA	NA	NA	NA	NA
AXK02399.1|1870832_1872467_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
AXK02400.1|1872463_1873819_+	amidase	NA	NA	NA	NA	NA
AXK02401.1|1874725_1876303_+	lipoprotein	NA	NA	NA	NA	NA
AXK02402.1|1876306_1877581_+	hypothetical protein	NA	NA	NA	NA	NA
AXK04349.1|1877678_1878053_+	hypothetical protein	NA	NA	NA	NA	NA
AXK02403.1|1879768_1880902_+	general secretion pathway protein	NA	NA	NA	NA	NA
AXK02404.1|1880939_1881545_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
AXK02405.1|1881541_1882360_+	hypothetical protein	NA	NA	NA	NA	NA
AXK02406.1|1882431_1885056_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
AXK02407.1|1885042_1885297_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
AXK02408.1|1885363_1885945_-	hypothetical protein	NA	NA	NA	NA	NA
AXK02409.1|1886248_1886509_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
AXK02410.1|1886674_1887298_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
AXK02411.1|1887297_1888071_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
AXK02412.1|1888067_1889276_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
AXK02413.1|1889301_1889775_-	RidA family protein	NA	NA	NA	NA	NA
AXK02414.1|1889848_1890799_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK02415.1|1890897_1891848_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK02416.1|1891945_1893295_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
AXK02417.1|1894060_1894816_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
AXK02418.1|1894908_1897791_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
AXK02419.1|1898113_1898539_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
AXK02420.1|1898566_1899715_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
AXK02421.1|1899711_1900218_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AXK02422.1|1900224_1901520_+	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin)	NA	NA	NA	NA	NA
AXK02423.1|1901560_1902865_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
AXK02424.1|1902866_1903505_+	hypothetical protein	NA	NA	NA	NA	NA
AXK02425.1|1903507_1904668_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
AXK02426.1|1904694_1906050_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
AXK02427.1|1906053_1907124_+	histidinol-phosphate aminotransferase 1	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
AXK02428.1|1907262_1907499_+	RNA-binding protein Hfq	NA	NA	NA	NA	NA
AXK02429.1|1907586_1908693_+	GTPase HflX	NA	NA	NA	NA	NA
AXK02430.1|1908658_1909963_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
AXK02431.1|1909981_1910881_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 16
CP031289	Bordetella pertussis strain UK36 chromosome, complete genome	4107923	1921121	1964392	4107923	transposase	Staphylococcus_phage(25.0%)	44	NA	NA
AXK02439.1|1921121_1922072_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK02440.1|1922058_1922259_-	hypothetical protein	NA	NA	NA	NA	NA
AXK02441.1|1922271_1923357_+	AI-2E family transporter	NA	NA	NA	NA	NA
AXK02442.1|1923372_1924134_-	ABC transporter permease	NA	NA	NA	NA	NA
AXK02443.1|1924130_1925054_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
AXK02444.1|1925152_1925677_-	N-acetyltransferase	NA	NA	NA	NA	NA
AXK02445.1|1925685_1926429_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
AXK02446.1|1926524_1926764_-	hypothetical protein	NA	NA	NA	NA	NA
AXK02447.1|1926777_1926930_-	lipoprotein	NA	NA	NA	NA	NA
AXK02448.1|1927015_1928506_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
AXK02449.1|1928597_1929536_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
AXK02450.1|1929532_1929709_-	CcoQ/FixQ family Cbb3-type cytochrome c oxidase assembly chaperone	NA	NA	NA	NA	NA
AXK02451.1|1929711_1930374_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
AXK04351.1|1931995_1932139_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
AXK02452.1|1932135_1933110_-	hypothetical protein	NA	NA	NA	NA	NA
AXK02453.1|1933276_1934227_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK02454.1|1934223_1935498_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
AXK02455.1|1935595_1936795_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
AXK02456.1|1936791_1937445_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AXK02457.1|1937441_1938878_+	dethiobiotin synthase	NA	NA	NA	NA	NA
AXK02458.1|1938865_1939225_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
AXK02459.1|1940196_1941147_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK02460.1|1941244_1942195_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK02461.1|1942191_1944057_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
AXK04352.1|1944314_1945835_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
AXK02462.1|1945922_1946573_-	flavodoxin family protein	NA	NA	NA	NA	NA
AXK02463.1|1947521_1948817_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
AXK02464.1|1948838_1949723_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXK04353.1|1949821_1950697_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
AXK02465.1|1950686_1951043_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
AXK02466.1|1951116_1952148_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AXK02467.1|1952277_1952457_-	DUF3008 family protein	NA	NA	NA	NA	NA
AXK02468.1|1952554_1953079_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
AXK02469.1|1953089_1953926_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AXK02470.1|1954038_1954410_+	transcriptional regulator	NA	NA	NA	NA	NA
AXK02471.1|1954406_1954958_+	ATPase	NA	NA	NA	NA	NA
AXK02472.1|1954973_1956665_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
AXK02473.1|1956713_1957394_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AXK02474.1|1957641_1958106_-	hypothetical protein	NA	NA	NA	NA	NA
AXK02475.1|1958275_1959205_+	ZIP family metal transporter	NA	NA	NA	NA	NA
AXK02476.1|1959217_1959865_-	hypothetical protein	NA	NA	NA	NA	NA
AXK02477.1|1959938_1961756_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
AXK02478.1|1961839_1962790_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK02479.1|1963441_1964392_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
CP031289	Bordetella pertussis strain UK36 chromosome, complete genome	4107923	1994168	2058533	4107923	transposase	Vibrio_phage(20.0%)	51	NA	NA
AXK02508.1|1994168_1995119_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK02509.1|1995339_1996290_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK02510.1|1996387_1997353_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK02511.1|1997490_1998390_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXK02512.1|2000984_2002472_+	hypothetical protein	NA	NA	NA	NA	NA
AXK02513.1|2002482_2003679_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
AXK02514.1|2003751_2005071_+	phenylacetate--CoA ligase family protein	NA	NA	NA	NA	NA
AXK02515.1|2005067_2005943_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AXK02516.1|2005973_2007143_-	CoA transferase	NA	NA	NA	NA	NA
AXK02517.1|2007139_2007454_-	ferredoxin	NA	NA	NA	NA	NA
AXK02518.1|2007475_2008198_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
AXK02519.1|2008197_2009016_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AXK02520.1|2009020_2009548_-	ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
AXK02521.1|2009553_2010819_-	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA	NA
AXK02522.1|2011168_2012308_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK02523.1|2012385_2013258_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AXK02524.1|2014127_2015078_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK02525.1|2015037_2015673_-	hypothetical protein	NA	NA	NA	NA	NA
AXK02526.1|2016032_2017355_-	isocitrate lyase	NA	NA	NA	NA	NA
AXK02527.1|2017583_2018495_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	5.9e-42
AXK02528.1|2019919_2020492_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
AXK02529.1|2020531_2022361_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
AXK02530.1|2022323_2023382_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
AXK02531.1|2023419_2023881_-	holo-ACP synthase	NA	NA	NA	NA	NA
AXK02532.1|2023965_2024712_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
AXK02533.1|2026202_2029433_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AXK02534.1|2029499_2030831_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AXK02535.1|2031083_2031458_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AXK02536.1|2031560_2032739_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
AXK02537.1|2032749_2033340_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
AXK04356.1|2033450_2034257_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXK02538.1|2034282_2035077_-	ATP-binding cassette domain-containing protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
AXK02539.1|2036077_2037052_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK04357.1|2037210_2037723_-	superoxide dismutase [Cu-Zn] SodC1	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
AXK02540.1|2037879_2038851_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK02541.1|2040595_2041402_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AXK04358.1|2041398_2042535_-	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
AXK02542.1|2042650_2043415_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AXK02543.1|2043528_2044299_-	spermidine synthase	NA	NA	NA	NA	NA
AXK02544.1|2044383_2045595_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
AXK02545.1|2045643_2046018_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
AXK02546.1|2046118_2047381_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
AXK02547.1|2047377_2048235_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
AXK02548.1|2048407_2049409_-	glycine/betaine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK02549.1|2049860_2050811_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK02550.1|2052325_2053525_+	MFS transporter	NA	NA	NA	NA	NA
AXK02551.1|2053893_2054130_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
AXK02552.1|2054193_2054361_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
AXK02553.1|2054474_2056370_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
AXK02554.1|2056533_2057484_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK02555.1|2057582_2058533_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
CP031289	Bordetella pertussis strain UK36 chromosome, complete genome	4107923	2183980	2268527	4107923	tRNA,transposase	Moraxella_phage(28.57%)	57	NA	NA
AXK02655.1|2183980_2184997_+|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AXK02656.1|2185390_2186683_-	aspartate kinase	NA	NA	NA	NA	NA
AXK02657.1|2186755_2187790_-|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	NA	NA	NA	NA
AXK02658.1|2187850_2188801_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK02659.1|2188898_2189864_-	acetyl-CoA carboxylase carboxyl transferase subunit alpha	NA	NA	NA	NA	NA
AXK02660.1|2189900_2190545_-	DNA-3-methyladenine glycosylase 2 family protein	NA	NA	NA	NA	NA
AXK02661.1|2190564_2192025_-|tRNA	cysteine--tRNA ligase	tRNA	A0A2K9L6B7	Tupanvirus	27.9	2.5e-34
AXK02662.1|2192264_2192948_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
AXK04364.1|2193076_2193586_+	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
AXK02663.1|2193578_2194355_+	UDP-2,3-diacylglucosamine diphosphatase	NA	NA	NA	NA	NA
AXK02664.1|2194562_2195426_-	undecaprenyl-diphosphatase	NA	NA	NA	NA	NA
AXK02665.1|2195450_2197037_-	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	42.0	1.9e-35
AXK02666.1|2197163_2197946_-	inositol monophosphatase	NA	NA	NA	NA	NA
AXK02667.1|2198053_2198830_+	RNA methyltransferase	NA	NA	NA	NA	NA
AXK02668.1|2199047_2200040_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK02669.1|2200141_2200960_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AXK02670.1|2200973_2201807_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
AXK02671.1|2201912_2202863_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK02672.1|2202967_2203999_+	peptidase C45	NA	NA	NA	NA	NA
AXK02673.1|2204012_2207636_-	5-oxoprolinase	NA	NA	NA	NA	NA
AXK02674.1|2207714_2208227_-	transcriptional regulator	NA	NA	NA	NA	NA
AXK02675.1|2209401_2210103_+	hypothetical protein	NA	NA	NA	NA	NA
AXK02676.1|2210123_2211089_+	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK02677.1|2211102_2211594_+	TRAP transporter small permease	NA	NA	NA	NA	NA
AXK02678.1|2213039_2214125_+	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK02679.1|2214131_2214632_+	TRAP transporter small permease	NA	NA	NA	NA	NA
AXK02680.1|2215949_2217704_-	filamentous hemagglutinin transporter protein FhaC	NA	NA	NA	NA	NA
AXK04365.1|2217696_2218794_-	type 1 fimbrial protein	NA	NA	NA	NA	NA
AXK02681.1|2218807_2221429_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA	NA
AXK02682.1|2221491_2222316_-	molecular chaperone	NA	NA	NA	NA	NA
AXK02683.1|2222475_2222913_-	protein FimA	NA	NA	NA	NA	NA
AXK02684.1|2222988_2233761_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	32.5	3.6e-29
AXK02685.1|2234187_2234817_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AXK02686.1|2234825_2238542_+	hybrid sensor histidine kinase/response regulator	NA	A0A1V0SGX0	Hokovirus	32.0	4.2e-33
AXK02687.1|2238585_2239461_-	EAL domain-containing protein	NA	NA	NA	NA	NA
AXK02688.1|2239594_2240428_-	putative hydro-lyase	NA	NA	NA	NA	NA
AXK02689.1|2240446_2241796_-	amidase	NA	NA	NA	NA	NA
AXK02690.1|2244981_2245932_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK02691.1|2246048_2246768_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AXK02692.1|2246940_2247927_+	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK02693.1|2247927_2248410_+	TRAP transporter small permease	NA	NA	NA	NA	NA
AXK02694.1|2248413_2249697_+	TRAP transporter large permease	NA	NA	NA	NA	NA
AXK02695.1|2249693_2250632_+	CoA ester lyase	NA	NA	NA	NA	NA
AXK02696.1|2250628_2252338_+	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
AXK02697.1|2252347_2253595_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
AXK04366.1|2255205_2256495_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
AXK02698.1|2257632_2258406_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	3.1e-31
AXK02699.1|2259067_2259811_-	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK02700.1|2259885_2260626_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AXK02701.1|2260821_2261658_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
AXK02702.1|2261708_2262479_-	TatD family deoxyribonuclease	NA	NA	NA	NA	NA
AXK02703.1|2262528_2263581_-	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
AXK02704.1|2263577_2264204_-	thymidylate kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
AXK02705.1|2264200_2265247_-	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
AXK02706.1|2265413_2266430_+	folate-binding protein	NA	NA	NA	NA	NA
AXK02707.1|2266528_2267479_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK04367.1|2267576_2268527_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
CP031289	Bordetella pertussis strain UK36 chromosome, complete genome	4107923	2287252	2349781	4107923	tRNA,transposase	Pandoravirus(20.0%)	52	NA	NA
AXK02722.1|2287252_2287759_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.4	3.4e-07
AXK02723.1|2287751_2288600_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
AXK02724.1|2288697_2289240_-	hypothetical protein	NA	NA	NA	NA	NA
AXK02725.1|2289283_2290234_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK02726.1|2290388_2290715_-	cation:proton antiporter	NA	NA	NA	NA	NA
AXK02727.1|2290711_2290996_-	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
AXK02728.1|2290992_2291472_-	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
AXK02729.1|2291468_2293097_-	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
AXK02730.1|2293093_2293438_-	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
AXK02731.1|2293437_2296371_-	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
AXK02732.1|2297529_2298480_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK04368.1|2298578_2298875_-	hypothetical protein	NA	NA	NA	NA	NA
AXK02733.1|2298981_2299899_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXK02734.1|2299903_2300617_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AXK02735.1|2300630_2301602_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK02736.1|2303321_2303702_+	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AXK02737.1|2303705_2304893_+	MFS transporter	NA	NA	NA	NA	NA
AXK04369.1|2305331_2306054_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
AXK02738.1|2306346_2307297_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK02739.1|2307293_2307722_-	hypothetical protein	NA	NA	NA	NA	NA
AXK04370.1|2309123_2310086_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK02740.1|2310201_2311155_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXK02741.1|2311164_2312157_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK02742.1|2312208_2312964_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
AXK02743.1|2313028_2313718_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
AXK02744.1|2313939_2314890_+	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
AXK02745.1|2314920_2316117_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
AXK04371.1|2316113_2316887_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
AXK04372.1|2316954_2317926_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK02746.1|2318011_2318956_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXK02747.1|2318933_2319803_-	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
AXK04373.1|2320046_2320670_+	glutathione S-transferase	NA	NA	NA	NA	NA
AXK02748.1|2320984_2321284_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AXK02749.1|2324494_2325169_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AXK02750.1|2325161_2326976_+	histidine kinase	NA	NA	NA	NA	NA
AXK02751.1|2327029_2327977_-	hypothetical protein	NA	NA	NA	NA	NA
AXK02752.1|2328080_2329031_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK02753.1|2329583_2331209_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
AXK04374.1|2331258_2332293_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
AXK04375.1|2333636_2335151_-	VWA domain-containing protein	NA	NA	NA	NA	NA
AXK02754.1|2335141_2336152_-	VWA domain-containing protein	NA	NA	NA	NA	NA
AXK02755.1|2336625_2337567_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
AXK02756.1|2337575_2338544_-	AAA family ATPase	NA	NA	NA	NA	NA
AXK02757.1|2340083_2341052_+	transporter	NA	NA	NA	NA	NA
AXK02758.1|2341229_2342219_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK02759.1|2342265_2343024_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
AXK02760.1|2343213_2343951_+	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
AXK02761.1|2344049_2345000_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK02762.1|2345184_2345967_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
AXK02763.1|2345960_2346662_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AXK02764.1|2346901_2347504_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AXK02765.1|2348830_2349781_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
CP031289	Bordetella pertussis strain UK36 chromosome, complete genome	4107923	2389057	2442169	4107923	transposase	Ectocarpus_siliculosus_virus(11.11%)	50	NA	NA
AXK02792.1|2389057_2390008_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK02793.1|2390027_2390933_-	pirin family protein	NA	NA	NA	NA	NA
AXK02794.1|2391010_2391709_-	pirin family protein	NA	NA	NA	NA	NA
AXK02795.1|2391868_2392813_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXK02796.1|2392822_2394313_-	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
AXK02797.1|2394309_2395377_-	PAS domain-containing sensor histidine kinase	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
AXK02798.1|2395440_2396853_-	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
AXK02799.1|2397038_2398259_-	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
AXK02800.1|2398280_2399231_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK02801.1|2399329_2399980_-	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
AXK02802.1|2400097_2401900_+	EAL domain-containing protein	NA	NA	NA	NA	NA
AXK02803.1|2401777_2403517_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	27.1	1.0e-10
AXK02804.1|2403551_2404457_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXK02805.1|2404638_2406015_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AXK02806.1|2406181_2406922_-	ribonuclease PH	NA	NA	NA	NA	NA
AXK02807.1|2407058_2407985_+	YicC family protein	NA	NA	NA	NA	NA
AXK02808.1|2408257_2408413_+	hypothetical protein	NA	NA	NA	NA	NA
AXK02809.1|2408425_2408554_+	hypothetical protein	NA	NA	NA	NA	NA
AXK02810.1|2408550_2408835_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AXK02811.1|2408893_2410384_-	AMP nucleosidase	NA	NA	NA	NA	NA
AXK02812.1|2410628_2411228_+	NlpC/P60 family protein	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
AXK02813.1|2411232_2412003_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
AXK02814.1|2412240_2412954_+	cytochrome C	NA	NA	NA	NA	NA
AXK02815.1|2412950_2413868_+	cytochrome C	NA	NA	NA	NA	NA
AXK02816.1|2413988_2414636_+	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	3.1e-13
AXK02817.1|2414677_2414881_+	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
AXK02818.1|2414905_2417185_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
AXK02819.1|2417197_2417926_-	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
AXK02820.1|2417922_2418582_-	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
AXK02821.1|2418650_2419403_-	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
AXK02822.1|2419584_2420535_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK02823.1|2421426_2422332_+	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
AXK02824.1|2422343_2423471_+	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
AXK02825.1|2423559_2424174_-	fimbrial protein	NA	NA	NA	NA	NA
AXK02826.1|2424832_2426020_-	cupin domain-containing protein	NA	NA	NA	NA	NA
AXK04378.1|2426016_2428614_-	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
AXK02827.1|2428868_2429084_+	dodecin domain-containing protein	NA	NA	NA	NA	NA
AXK02828.1|2429539_2430094_-	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
AXK02829.1|2430361_2430922_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AXK02830.1|2431033_2432338_+	peptidase	NA	NA	NA	NA	NA
AXK02831.1|2432334_2433846_+	thiol oxidoreductase	NA	NA	NA	NA	NA
AXK02832.1|2433951_2434953_+	aminopeptidase	NA	NA	NA	NA	NA
AXK02833.1|2434933_2436055_+	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
AXK02834.1|2436152_2437103_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK02835.1|2437099_2437726_-	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
AXK04379.1|2437791_2438637_+	hypothetical protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
AXK02836.1|2438740_2439340_+	hypothetical protein	NA	NA	NA	NA	NA
AXK02837.1|2439336_2440101_+	DUF1828 domain-containing protein	NA	NA	NA	NA	NA
AXK02838.1|2440170_2441121_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK02839.1|2441218_2442169_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
CP031289	Bordetella pertussis strain UK36 chromosome, complete genome	4107923	2455481	2507846	4107923	protease,tRNA,transposase	Planktothrix_phage(15.38%)	55	NA	NA
AXK02846.1|2455481_2456432_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK02847.1|2456529_2456931_-	aryl-sulfate sulfotransferase	NA	NA	NA	NA	NA
AXK02848.1|2457003_2457582_-|protease	protease	protease	NA	NA	NA	NA
AXK04380.1|2457699_2458188_-|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
AXK02849.1|2458201_2459134_-	site-specific tyrosine recombinase XerD	NA	A0A0K2CP59	Brevibacillus_phage	29.5	2.3e-25
AXK02850.1|2459171_2460059_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	28.7	3.4e-18
AXK02851.1|2460216_2461911_+	thiamine pyrophosphate-binding protein	NA	E5ERI2	Ostreococcus_lucimarinus_virus	24.5	3.8e-26
AXK02852.1|2461927_2463184_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AXK02853.1|2463321_2463867_-	acyl dehydratase	NA	NA	NA	NA	NA
AXK02854.1|2463898_2465458_-	acetolactate synthase large subunit	NA	NA	NA	NA	NA
AXK02855.1|2465586_2466339_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	2.8e-29
AXK02856.1|2466360_2467053_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AXK02857.1|2467075_2467867_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK02858.1|2467893_2468799_-	agmatinase	NA	NA	NA	NA	NA
AXK02859.1|2468991_2469828_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AXK02860.1|2469919_2470942_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	40.7	1.6e-67
AXK02861.1|2471078_2472131_-	threonylcarbamoyl-AMP synthase	NA	S4VW33	Pandoravirus	37.8	4.8e-35
AXK02862.1|2472135_2473326_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
AXK02863.1|2473328_2473808_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.5	6.5e-16
AXK02864.1|2473993_2474473_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
AXK02865.1|2474480_2474717_-	hypothetical protein	NA	NA	NA	NA	NA
AXK02866.1|2474736_2475138_-	type II toxin-antitoxin system MqsA family antitoxin	NA	NA	NA	NA	NA
AXK02867.1|2475140_2475392_-	type II toxin-antitoxin system MqsR family toxin	NA	NA	NA	NA	NA
AXK02868.1|2475446_2476328_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0M4JBD3	Mollivirus	36.1	1.8e-51
AXK02869.1|2476552_2476999_+	GFA family protein	NA	NA	NA	NA	NA
AXK02870.1|2477083_2478148_-	fructose-bisphosphate aldolase class II	NA	NA	NA	NA	NA
AXK02871.1|2478284_2478866_-	MOSC domain-containing protein	NA	NA	NA	NA	NA
AXK02872.1|2479100_2480231_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AXK02873.1|2480408_2481635_+	acetamidase/formamidase family protein	NA	A0A1V0S8X7	Catovirus	58.8	5.2e-134
AXK02874.1|2481693_2482209_+	transporter	NA	NA	NA	NA	NA
AXK02875.1|2482231_2482558_+	zinc ribbon domain-containing protein	NA	NA	NA	NA	NA
AXK02876.1|2482591_2483782_+	NAD-dependent formate dehydrogenase	NA	NA	NA	NA	NA
AXK02877.1|2483855_2484260_+	GFA family protein	NA	NA	NA	NA	NA
AXK02878.1|2484476_2485427_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK02879.1|2485524_2486295_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.5	8.3e-29
AXK02880.1|2486291_2486963_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuD	NA	NA	NA	NA	NA
AXK02881.1|2486959_2487601_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuC	NA	NA	NA	NA	NA
AXK02882.1|2487613_2488534_-	ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB	NA	NA	NA	NA	NA
AXK02883.1|2488694_2489855_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK02884.1|2489896_2490847_-	ornithine cyclodeaminase family protein	NA	NA	NA	NA	NA
AXK02885.1|2491445_2491670_+	hypothetical protein	NA	NA	NA	NA	NA
AXK02886.1|2491834_2493529_-	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
AXK02887.1|2493650_2493920_-	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
AXK02888.1|2494035_2494434_-	PTS mannose transporter subunit IIA	NA	NA	NA	NA	NA
AXK02889.1|2494444_2495401_-	glutathione synthetase	NA	NA	NA	NA	NA
AXK02890.1|2495537_2496083_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	29.9	9.1e-14
AXK02891.1|2496103_2498053_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
AXK02892.1|2498440_2499217_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AXK02893.1|2499222_2499615_+	hypothetical protein	NA	NA	NA	NA	NA
AXK02894.1|2500035_2500986_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK02895.1|2500982_2502080_-	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
AXK02896.1|2502111_2503062_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK02897.1|2504842_2506084_-	MFS transporter	NA	NA	NA	NA	NA
AXK02898.1|2506095_2506869_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
AXK02899.1|2506895_2507846_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
CP031289	Bordetella pertussis strain UK36 chromosome, complete genome	4107923	2512745	2566182	4107923	tRNA,transposase	Planktothrix_phage(28.57%)	49	NA	NA
AXK02904.1|2512745_2513558_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
AXK02905.1|2513561_2515265_-	peptidoglycan-binding protein LysM	NA	NA	NA	NA	NA
AXK02906.1|2515315_2516446_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AXK02907.1|2516632_2517709_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
AXK04381.1|2517790_2518441_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
AXK02908.1|2518455_2519889_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
AXK02909.1|2520142_2520961_-	tungsten ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK02910.1|2520957_2521662_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
AXK02911.1|2522561_2523677_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXK02912.1|2523710_2524085_-	hypothetical protein	NA	NA	NA	NA	NA
AXK02913.1|2524107_2525265_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
AXK02914.1|2525277_2525511_-	lipoprotein	NA	NA	NA	NA	NA
AXK02915.1|2526145_2529115_-	formate dehydrogenase	NA	NA	NA	NA	NA
AXK02916.1|2529129_2529339_-	formate dehydrogenase	NA	NA	NA	NA	NA
AXK02917.1|2529490_2530120_-	molecular chaperone	NA	NA	NA	NA	NA
AXK02918.1|2530116_2532234_-	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA	NA
AXK02919.1|2532230_2532911_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
AXK02920.1|2532907_2533468_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
AXK02921.1|2533474_2534572_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
AXK02922.1|2534709_2535318_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
AXK02923.1|2535314_2536607_+	molybdopterin molybdenumtransferase MoeA	NA	NA	NA	NA	NA
AXK02924.1|2536620_2537163_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
AXK02925.1|2537172_2538009_-	M48 family peptidase	NA	NA	NA	NA	NA
AXK02926.1|2538042_2539104_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
AXK02927.1|2539145_2540198_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
AXK02928.1|2540213_2540516_-	hypothetical protein	NA	NA	NA	NA	NA
AXK02929.1|2540657_2541608_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK02930.1|2541785_2543480_+	iron ABC transporter permease	NA	NA	NA	NA	NA
AXK02931.1|2543476_2544562_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
AXK02932.1|2544609_2545509_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXK02933.1|2545519_2546164_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
AXK02934.1|2547185_2550428_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
AXK02935.1|2550438_2551536_-	carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.2	5.3e-53
AXK02936.1|2551798_2552782_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	5.9e-11
AXK02937.1|2552879_2553830_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK02938.1|2553927_2554878_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK02939.1|2554975_2555926_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK02940.1|2555935_2556625_-	VIT family protein	NA	NA	NA	NA	NA
AXK02941.1|2556684_2557122_-	PaaI family thioesterase	NA	NA	NA	NA	NA
AXK02942.1|2557167_2558061_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
AXK02943.1|2558108_2559281_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AXK02944.1|2559277_2560432_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AXK02945.1|2560628_2560979_-	RnfH family protein	NA	NA	NA	NA	NA
AXK02946.1|2560968_2561403_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
AXK02947.1|2561419_2562370_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK02948.1|2562516_2562984_+	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
AXK02949.1|2562964_2564122_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
AXK02950.1|2564187_2565114_-	paraslipin	NA	NA	NA	NA	NA
AXK02951.1|2565231_2566182_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
CP031289	Bordetella pertussis strain UK36 chromosome, complete genome	4107923	2837478	2903057	4107923	tRNA,transposase	Oenococcus_phage(33.33%)	53	NA	NA
AXK03163.1|2837478_2838429_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK03164.1|2838526_2839477_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK03165.1|2839678_2840668_+	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
AXK04399.1|2840751_2841105_+	hypothetical protein	NA	NA	NA	NA	NA
AXK03166.1|2841182_2841791_-	hypothetical protein	NA	NA	NA	NA	NA
AXK03167.1|2843464_2844043_-	amino acid synthesis family protein	NA	NA	NA	NA	NA
AXK03168.1|2844067_2845021_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK03169.1|2845060_2845978_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AXK03170.1|2846099_2847026_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXK03171.1|2847033_2847780_-	aldolase	NA	NA	NA	NA	NA
AXK04400.1|2848106_2849048_+	LD-carboxypeptidase	NA	NA	NA	NA	NA
AXK03172.1|2849123_2849246_-	hypothetical protein	NA	NA	NA	NA	NA
AXK03173.1|2849274_2850972_-	sodium:proline symporter	NA	NA	NA	NA	NA
AXK03174.1|2851406_2852828_-	MFS transporter	NA	NA	NA	NA	NA
AXK03175.1|2852981_2853761_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
AXK04401.1|2853885_2854758_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXK03176.1|2854869_2855994_+	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
AXK03177.1|2856039_2857002_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK03178.1|2856994_2857849_+	2-pyrone-4,6-dicarboxylate hydrolase	NA	NA	NA	NA	NA
AXK03179.1|2857956_2858367_+	VOC family protein	NA	NA	NA	NA	NA
AXK03180.1|2858363_2859314_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AXK03181.1|2859411_2860293_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
AXK03182.1|2860370_2861750_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
AXK03183.1|2861788_2862634_-	FTR1 family iron permease	NA	NA	NA	NA	NA
AXK03184.1|2862649_2862994_-	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
AXK03185.1|2862996_2863533_-	hypothetical protein	NA	NA	NA	NA	NA
AXK03186.1|2863705_2864281_-	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
AXK03187.1|2864383_2865121_-	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
AXK03188.1|2865188_2866826_-	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
AXK03189.1|2866933_2867689_-	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
AXK03190.1|2867676_2868639_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
AXK03191.1|2868740_2869541_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
AXK03192.1|2869602_2871678_-	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
AXK03193.1|2871842_2874218_+	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
AXK03194.1|2874298_2875654_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
AXK03195.1|2877130_2877853_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
AXK03196.1|2877907_2878891_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK03197.1|2879020_2879971_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK03198.1|2879967_2880870_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXK03199.1|2880957_2881716_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
AXK03200.1|2881728_2882877_-	cell division protein ZapE	NA	NA	NA	NA	NA
AXK03201.1|2882917_2884345_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
AXK03202.1|2884574_2885789_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
AXK03203.1|2885834_2888705_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
AXK03204.1|2891115_2891604_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AXK03205.1|2891729_2894426_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
AXK03206.1|2894580_2896863_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
AXK03207.1|2897027_2897660_+	fimbrial protein	NA	NA	NA	NA	NA
AXK03208.1|2897758_2898709_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK03209.1|2898755_2899310_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
AXK03210.1|2899377_2900223_-	PHP domain-containing protein	NA	NA	NA	NA	NA
AXK03211.1|2900292_2901261_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AXK03212.1|2901260_2903057_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
CP031289	Bordetella pertussis strain UK36 chromosome, complete genome	4107923	2920626	2981566	4107923	holin,tRNA,transposase	Catovirus(22.22%)	50	NA	NA
AXK03222.1|2920626_2922147_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
AXK03223.1|2922189_2922492_+	hypothetical protein	NA	NA	NA	NA	NA
AXK03224.1|2922488_2923121_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AXK03225.1|2923199_2925065_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
AXK03226.1|2925061_2925877_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.7	7.5e-12
AXK03227.1|2925884_2927000_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK03228.1|2927904_2928783_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AXK03229.1|2928782_2929607_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
AXK03230.1|2929774_2930725_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK03231.1|2930907_2933787_+	EAL domain-containing protein	NA	NA	NA	NA	NA
AXK03232.1|2933768_2934545_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AXK03233.1|2934637_2936101_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
AXK03234.1|2936097_2936469_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
AXK03235.1|2936486_2937800_+	YihY family inner membrane protein	NA	NA	NA	NA	NA
AXK03236.1|2937836_2938295_+	CBS domain-containing protein	NA	NA	NA	NA	NA
AXK03237.1|2938406_2939357_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK03238.1|2939455_2940406_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK03239.1|2940402_2941416_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
AXK03240.1|2941555_2942542_+	homoserine kinase	NA	NA	NA	NA	NA
AXK03241.1|2942585_2943386_+	hypothetical protein	NA	NA	NA	NA	NA
AXK03242.1|2944188_2945139_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK03243.1|2945289_2945892_-	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
AXK03244.1|2945910_2946543_+	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
AXK03245.1|2946780_2948667_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
AXK03246.1|2948685_2949528_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
AXK03247.1|2949524_2950883_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
AXK03248.1|2951103_2951898_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AXK03249.1|2952128_2953622_-	exopolyphosphatase	NA	NA	NA	NA	NA
AXK03250.1|2953857_2955939_+	polyphosphate kinase 1	NA	NA	NA	NA	NA
AXK03251.1|2956133_2957174_+	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
AXK03252.1|2957308_2958325_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
AXK03253.1|2958346_2959204_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
AXK04403.1|2959248_2960025_+	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
AXK03254.1|2960391_2961342_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK03255.1|2961368_2961833_-	barstar family protein 2	NA	NA	NA	NA	NA
AXK03256.1|2963039_2965328_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
AXK03257.1|2965444_2966317_-	hypothetical protein	NA	NA	NA	NA	NA
AXK03258.1|2966359_2967514_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
AXK03259.1|2967548_2968379_-	transglycosylase	NA	NA	NA	NA	NA
AXK03260.1|2968462_2970007_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
AXK03261.1|2970049_2970409_-	hypothetical protein	NA	NA	NA	NA	NA
AXK03262.1|2970410_2970824_-|holin	phage holin family protein	holin	NA	NA	NA	NA
AXK03263.1|2970864_2971182_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
AXK03264.1|2971266_2971983_-	hypothetical protein	NA	NA	NA	NA	NA
AXK04404.1|2972246_2973668_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
AXK03265.1|2973734_2976482_-	pertactin autotransporter	NA	NA	NA	NA	NA
AXK03266.1|2976814_2977831_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AXK04405.1|2978166_2978808_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
AXK03267.1|2978898_2980335_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
AXK03268.1|2980492_2981566_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
>prophage 25
CP031289	Bordetella pertussis strain UK36 chromosome, complete genome	4107923	2986452	3058950	4107923	tRNA,transposase	Pseudomonas_phage(14.29%)	58	NA	NA
AXK03273.1|2986452_2987469_+|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AXK03274.1|2988406_2989834_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
AXK03275.1|2989830_2990853_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
AXK03276.1|2990842_2991316_+	endoribonuclease YbeY	NA	NA	NA	NA	NA
AXK03277.1|2991441_2992344_+	CBS domain-containing protein	NA	NA	NA	NA	NA
AXK03278.1|2992340_2993984_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
AXK03279.1|2996916_2997549_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
AXK03280.1|2997557_2997947_-	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
AXK03281.1|2997999_2999052_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
AXK03282.1|2999915_3001622_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
AXK03283.1|3001695_3002196_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
AXK03284.1|3002210_3004268_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
AXK03285.1|3004294_3004588_-	response regulator	NA	NA	NA	NA	NA
AXK03286.1|3004689_3005637_-	motility protein MotB	NA	NA	NA	NA	NA
AXK03287.1|3005649_3006525_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
AXK03288.1|3006645_3007206_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
AXK03289.1|3007240_3007564_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
AXK03290.1|3007999_3008737_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
AXK03291.1|3009035_3009986_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK03292.1|3010229_3010493_+	translation initiation factor IF-1	NA	NA	NA	NA	NA
AXK03293.1|3010566_3010848_+	hypothetical protein	NA	NA	NA	NA	NA
AXK03294.1|3010864_3011725_-	M23 family peptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
AXK03295.1|3011721_3012057_-	hypothetical protein	NA	NA	NA	NA	NA
AXK03296.1|3012110_3012761_-	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
AXK03297.1|3014441_3015386_-	hypothetical protein	NA	NA	NA	NA	NA
AXK03298.1|3015431_3015749_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AXK03299.1|3015751_3016690_-	curved DNA-binding protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
AXK03300.1|3016867_3017353_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AXK03301.1|3017371_3017920_+	damage-inducible protein DinB	NA	NA	NA	NA	NA
AXK03302.1|3018196_3019330_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AXK03303.1|3019367_3020075_+	glutathione transferase	NA	NA	NA	NA	NA
AXK04406.1|3020229_3022578_+	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
AXK03304.1|3022574_3023513_+	phosphate acetyltransferase	NA	NA	NA	NA	NA
AXK03305.1|3023538_3024729_+	acetate kinase	NA	NA	NA	NA	NA
AXK03306.1|3024725_3025499_+	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
AXK03307.1|3025528_3026722_-	phosphoglycerate kinase	NA	NA	NA	NA	NA
AXK03308.1|3026839_3027850_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
AXK03309.1|3027867_3029904_-	transketolase	NA	NA	NA	NA	NA
AXK03310.1|3030098_3030839_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
AXK03311.1|3030936_3031887_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK03312.1|3031929_3033105_+	FliC/FljB family flagellin	NA	NA	NA	NA	NA
AXK03313.1|3033326_3035117_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
AXK03314.1|3035129_3036791_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
AXK03315.1|3036803_3039509_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
AXK03316.1|3039801_3041556_+	PAS domain-containing sensor histidine kinase	NA	NA	NA	NA	NA
AXK03317.1|3041552_3042179_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AXK03318.1|3042175_3043027_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
AXK03319.1|3043102_3045217_+	M3 family peptidase	NA	NA	NA	NA	NA
AXK03320.1|3045367_3046018_+	SCO family protein	NA	NA	NA	NA	NA
AXK03321.1|3046163_3046415_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
AXK03322.1|3046484_3047867_-	multidrug transporter	NA	NA	NA	NA	NA
AXK03323.1|3047863_3051043_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AXK04407.1|3051850_3052768_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXK03324.1|3052819_3053551_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
AXK03325.1|3053610_3054183_+	chorismate lyase	NA	NA	NA	NA	NA
AXK03326.1|3055691_3056708_+|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AXK03327.1|3056845_3057895_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
AXK03328.1|3057999_3058950_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
CP031289	Bordetella pertussis strain UK36 chromosome, complete genome	4107923	3078350	3143285	4107923	transposase	Bacillus_phage(18.18%)	59	NA	NA
AXK03343.1|3078350_3079301_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK03344.1|3079399_3079984_-	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
AXK03345.1|3080018_3081008_-	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
AXK03346.1|3081004_3081946_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
AXK03347.1|3081942_3083163_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
AXK03348.1|3083205_3083520_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
AXK03349.1|3083711_3084071_-	integration host factor subunit beta	NA	NA	NA	NA	NA
AXK03350.1|3084072_3085803_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
AXK03351.1|3085975_3086647_-	(d)CMP kinase	NA	NA	NA	NA	NA
AXK03352.1|3086661_3087990_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
AXK03353.1|3087986_3088886_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
AXK03354.1|3088972_3090058_-	prephenate dehydratase	NA	NA	NA	NA	NA
AXK03355.1|3090050_3091184_-	phosphoserine aminotransferase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
AXK03356.1|3091183_3093865_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
AXK03357.1|3094235_3094817_+	OmpA family protein	NA	NA	NA	NA	NA
AXK03358.1|3094894_3095668_+	bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA	NA	NA	NA	NA
AXK03359.1|3095664_3096342_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AXK03360.1|3096557_3097739_+	MFS transporter	NA	NA	NA	NA	NA
AXK03361.1|3098215_3098473_+	hypothetical protein	NA	NA	NA	NA	NA
AXK03362.1|3098511_3098694_+	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
AXK03363.1|3098723_3099674_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK04409.1|3099803_3100196_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
AXK03364.1|3100472_3101384_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
AXK03365.1|3101508_3102483_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK03366.1|3102479_3103430_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK03367.1|3103527_3104613_-	DNA polymerase IV	NA	NA	NA	NA	NA
AXK03368.1|3104710_3105121_+	PaaI family thioesterase	NA	NA	NA	NA	NA
AXK03369.1|3105736_3107650_+	S9 family peptidase	NA	NA	NA	NA	NA
AXK03370.1|3107785_3110398_+	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
AXK03371.1|3110399_3111134_-	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
AXK03372.1|3111297_3112479_+	PepSY domain-containing protein	NA	NA	NA	NA	NA
AXK03373.1|3112475_3112688_+	hypothetical protein	NA	NA	NA	NA	NA
AXK03374.1|3112684_3113665_-	aldo/keto reductase	NA	NA	NA	NA	NA
AXK04410.1|3113710_3114538_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
AXK03375.1|3114684_3116502_+	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
AXK03376.1|3116556_3116940_+	ferredoxin	NA	NA	NA	NA	NA
AXK03377.1|3116936_3117887_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK03378.1|3117997_3118249_-	hypothetical protein	NA	NA	NA	NA	NA
AXK03379.1|3118442_3118658_-	hypothetical protein	NA	NA	NA	NA	NA
AXK03380.1|3118754_3119873_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
AXK03381.1|3119992_3120205_-	hypothetical protein	NA	NA	NA	NA	NA
AXK03382.1|3120364_3120586_-	hypothetical protein	NA	NA	NA	NA	NA
AXK03383.1|3120638_3121589_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK03384.1|3122764_3124135_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
AXK03385.1|3124167_3124959_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AXK03386.1|3124971_3126027_-	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA	NA
AXK03387.1|3126052_3126928_-	amidohydrolase	NA	NA	NA	NA	NA
AXK03388.1|3127033_3127282_-	hypothetical protein	NA	NA	NA	NA	NA
AXK03389.1|3127316_3128771_-	carboxylase	NA	NA	NA	NA	NA
AXK03390.1|3129316_3130669_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AXK03391.1|3130892_3133781_-	HD domain-containing protein	NA	NA	NA	NA	NA
AXK03392.1|3135925_3137227_+	phospholipase	NA	NA	NA	NA	NA
AXK03393.1|3137241_3137958_-	flagellar brake protein	NA	NA	NA	NA	NA
AXK03394.1|3138239_3138920_+	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
AXK03395.1|3138931_3139099_-	hypothetical protein	NA	NA	NA	NA	NA
AXK03396.1|3139207_3139360_-	hypothetical protein	NA	NA	NA	NA	NA
AXK03397.1|3139447_3140107_-	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
AXK03398.1|3140487_3142338_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
AXK03399.1|3142334_3143285_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
CP031289	Bordetella pertussis strain UK36 chromosome, complete genome	4107923	3152897	3203209	4107923	holin,transposase	Acidithiobacillus_phage(33.33%)	41	NA	NA
AXK03409.1|3152897_3153848_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK03410.1|3153946_3154897_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK03411.1|3155036_3156254_+	threonine ammonia-lyase	NA	NA	NA	NA	NA
AXK03412.1|3156247_3156859_-	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
AXK03413.1|3157492_3158470_+	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
AXK03414.1|3158613_3159360_+	triose-phosphate isomerase	NA	NA	NA	NA	NA
AXK03415.1|3159381_3159828_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
AXK03416.1|3160615_3162847_+|holin	high-affinity choline transporter BetT	holin	NA	NA	NA	NA
AXK03417.1|3162869_3163670_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AXK03418.1|3163951_3165184_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AXK03419.1|3165294_3166284_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK03420.1|3166314_3167703_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AXK03421.1|3169301_3170285_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK03422.1|3170481_3171498_+|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AXK03423.1|3171694_3172519_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
AXK03424.1|3172596_3173520_-	transcriptional regulator LrhA	NA	NA	NA	NA	NA
AXK03425.1|3173600_3174842_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
AXK03426.1|3174875_3175877_+	peptidase M14	NA	NA	NA	NA	NA
AXK03427.1|3176005_3176977_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK03428.1|3177001_3179086_+	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
AXK03429.1|3179152_3180145_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK03430.1|3180253_3181588_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
AXK03431.1|3181613_3183626_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
AXK04411.1|3183622_3185671_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
AXK03432.1|3185774_3186422_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AXK03433.1|3186562_3187057_+	azurin	NA	NA	NA	NA	NA
AXK03434.1|3187100_3187772_-	transcriptional regulator	NA	NA	NA	NA	NA
AXK03435.1|3187786_3189280_-	TolC family protein	NA	NA	NA	NA	NA
AXK03436.1|3189276_3192390_-	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
AXK03437.1|3192402_3193509_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AXK03438.1|3193632_3194301_-	transcriptional regulator	NA	NA	NA	NA	NA
AXK03439.1|3194521_3195472_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK03440.1|3195554_3197513_+|holin	high-affinity choline transporter BetT	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
AXK03441.1|3197540_3198242_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXK03442.1|3198388_3199204_+	diacylglycerol kinase	NA	NA	NA	NA	NA
AXK03443.1|3199200_3200016_+	metallophosphoesterase	NA	NA	NA	NA	NA
AXK03444.1|3200032_3200836_+	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
AXK03445.1|3200819_3201254_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AXK03446.1|3201250_3201685_-	PaaI family thioesterase	NA	NA	NA	NA	NA
AXK04412.1|3201686_3202286_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AXK03447.1|3202258_3203209_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
CP031289	Bordetella pertussis strain UK36 chromosome, complete genome	4107923	3235954	3304955	4107923	transposase	Klosneuvirus(16.67%)	56	NA	NA
AXK03475.1|3235954_3236905_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK03476.1|3236901_3237921_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
AXK03477.1|3237930_3240639_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
AXK03478.1|3240786_3241443_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
AXK03479.1|3241541_3242492_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK03480.1|3242597_3243533_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
AXK03481.1|3243732_3245427_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
AXK03482.1|3245461_3246388_+	VOC family protein	NA	NA	NA	NA	NA
AXK04413.1|3246456_3247554_+	hypothetical protein	NA	NA	NA	NA	NA
AXK03483.1|3247572_3248436_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
AXK03484.1|3248447_3249230_+	ABC transporter permease	NA	NA	NA	NA	NA
AXK03485.1|3249226_3250345_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
AXK03486.1|3250341_3251874_+	long-chain fatty acid--CoA ligase	NA	NA	NA	NA	NA
AXK03487.1|3251914_3252922_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
AXK03488.1|3253066_3253789_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AXK03489.1|3253804_3254827_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AXK03490.1|3255143_3255878_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AXK03491.1|3255962_3257708_+	acetolactate synthase catalytic subunit	NA	NA	NA	NA	NA
AXK03492.1|3257704_3258457_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
AXK03493.1|3258501_3259458_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK03494.1|3259546_3260113_+	hypothetical protein	NA	NA	NA	NA	NA
AXK03495.1|3260120_3260981_-	D-amino-acid transaminase	NA	NA	NA	NA	NA
AXK03496.1|3261010_3261754_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.5e-32
AXK03497.1|3261770_3262454_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
AXK03498.1|3263291_3264206_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK03499.1|3264270_3265179_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXK03500.1|3265269_3266694_-	TolC family protein	NA	NA	NA	NA	NA
AXK03501.1|3266695_3268018_-	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA	NA
AXK03502.1|3268014_3270153_-	cyclolysin secretion/processing ATP-binding protein CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
AXK03503.1|3270230_3275351_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
AXK04414.1|3275537_3275717_-	hypothetical protein	NA	NA	NA	NA	NA
AXK03504.1|3275799_3276387_+	toxin-activating lysine-acyltransferase	NA	NA	NA	NA	NA
AXK03505.1|3276402_3277884_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AXK03506.1|3277938_3279792_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AXK03507.1|3280053_3281391_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
AXK03508.1|3281425_3283423_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
AXK03509.1|3283440_3285489_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
AXK03510.1|3285619_3286486_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXK03511.1|3286754_3287720_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
AXK03512.1|3287834_3288983_-	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
AXK03513.1|3289407_3289719_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
AXK03514.1|3289752_3290013_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
AXK03515.1|3290162_3291296_+	GTPase ObgE	NA	NA	NA	NA	NA
AXK03516.1|3291366_3292503_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
AXK03517.1|3292668_3293463_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AXK03518.1|3293525_3293969_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AXK03519.1|3294084_3295035_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK03520.1|3295021_3295210_-	hypothetical protein	NA	NA	NA	NA	NA
AXK03521.1|3295157_3295565_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AXK03522.1|3295637_3297833_+	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
AXK03523.1|3298053_3299004_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK03524.1|3298963_3299488_-	RNA polymerase subunit sigma	NA	NA	NA	NA	NA
AXK03525.1|3299619_3300591_+	FecR family protein	NA	NA	NA	NA	NA
AXK04415.1|3300710_3303155_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
AXK03526.1|3303170_3303761_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
AXK03527.1|3304004_3304955_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
CP031289	Bordetella pertussis strain UK36 chromosome, complete genome	4107923	3320398	3420509	4107923	terminase,tail,tRNA,transposase	uncultured_Caudovirales_phage(13.79%)	109	NA	NA
AXK03541.1|3320398_3321349_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK03542.1|3322080_3322458_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
AXK03543.1|3322442_3323144_-	hypothetical protein	NA	NA	NA	NA	NA
AXK03544.1|3323287_3323980_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
AXK03545.1|3323979_3325083_-	aminoglycoside phosphotransferase	NA	NA	NA	NA	NA
AXK03546.1|3325192_3327565_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
AXK03547.1|3327561_3329121_+	chaperone SurA	NA	NA	NA	NA	NA
AXK03548.1|3329145_3329943_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
AXK03549.1|3329974_3331120_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
AXK03550.1|3331224_3332667_+	pyruvate kinase	NA	NA	NA	NA	NA
AXK04416.1|3332669_3333758_-	hypothetical protein	NA	NA	NA	NA	NA
AXK03551.1|3336036_3336987_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK03552.1|3336973_3337192_-	hypothetical protein	NA	NA	NA	NA	NA
AXK03553.1|3338116_3338674_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK03554.1|3338649_3339000_-	hypothetical protein	NA	NA	NA	NA	NA
AXK03555.1|3339168_3339963_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
AXK03556.1|3339959_3341009_-	iron ABC transporter permease	NA	NA	NA	NA	NA
AXK03557.1|3341008_3341698_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
AXK03558.1|3341784_3342282_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
AXK03559.1|3342313_3343630_-	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
AXK03560.1|3343646_3344621_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
AXK03561.1|3344657_3345116_-	protein TolR	NA	NA	NA	NA	NA
AXK03562.1|3345115_3345796_-	protein TolQ	NA	NA	NA	NA	NA
AXK03563.1|3345798_3346227_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
AXK03564.1|3346279_3348010_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
AXK03565.1|3348075_3348648_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
AXK03566.1|3348628_3349315_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AXK03567.1|3349670_3350342_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
AXK03568.1|3350348_3350549_-	hypothetical protein	NA	NA	NA	NA	NA
AXK03569.1|3350891_3351173_+	hypothetical protein	NA	NA	NA	NA	NA
AXK03570.1|3351169_3351703_-	DUF2514 family protein	NA	NA	NA	NA	NA
AXK03571.1|3351684_3352236_-	lysozyme	NA	NA	NA	NA	NA
AXK03572.1|3352214_3352457_-	hypothetical protein	NA	NA	NA	NA	NA
AXK03573.1|3352461_3353274_-	hypothetical protein	NA	NA	NA	NA	NA
AXK03574.1|3353273_3353537_-	hypothetical protein	NA	NA	NA	NA	NA
AXK03575.1|3353755_3354172_-	hypothetical protein	NA	NA	NA	NA	NA
AXK03576.1|3354176_3358133_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
AXK03577.1|3358125_3358515_-	peptidoglycan endopeptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
AXK03578.1|3358511_3359045_-	DUF1833 domain-containing protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
AXK03579.1|3359112_3359472_-	hypothetical protein	NA	NA	NA	NA	NA
AXK03580.1|3359481_3362094_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
AXK03581.1|3362119_3362410_-	hypothetical protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
AXK03582.1|3362427_3362757_-	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
AXK03583.1|3362766_3363285_-|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
AXK03584.1|3363539_3364040_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
AXK03585.1|3364047_3364470_-	hypothetical protein	NA	NA	NA	NA	NA
AXK03586.1|3364466_3364865_-	HK97 gp10 family phage protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
AXK03587.1|3364861_3365257_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
AXK03588.1|3365256_3365457_-	hypothetical protein	NA	NA	NA	NA	NA
AXK03589.1|3365458_3365941_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
AXK03590.1|3366003_3366255_-	hypothetical protein	NA	NA	NA	NA	NA
AXK03591.1|3366264_3366912_-	hypothetical protein	NA	R9TJ64	Synechococcus_phage	71.1	2.7e-65
AXK03592.1|3366929_3367880_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK03593.1|3368308_3368911_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
AXK03594.1|3369033_3369276_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
AXK04417.1|3369281_3370337_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
AXK03595.1|3370365_3371784_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
AXK03596.1|3371786_3373064_-|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
AXK03597.1|3373050_3373500_-|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	5.2e-39
AXK03598.1|3374175_3375126_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK03599.1|3375143_3375365_+	hypothetical protein	NA	NA	NA	NA	NA
AXK03600.1|3375379_3376078_+	hypothetical protein	NA	NA	NA	NA	NA
AXK03601.1|3376070_3376391_+	hypothetical protein	NA	NA	NA	NA	NA
AXK04418.1|3376870_3377482_+	LexA family transcriptional repressor	NA	NA	NA	NA	NA
AXK03602.1|3377547_3377760_+	hypothetical protein	NA	NA	NA	NA	NA
AXK03603.1|3378011_3378962_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK03604.1|3379060_3380134_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
AXK03605.1|3380301_3381096_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK03606.1|3381135_3381660_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
AXK03607.1|3381652_3383395_-	nitrite/sulfite reductase	NA	NA	NA	NA	NA
AXK03608.1|3383604_3384363_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
AXK03609.1|3384365_3385073_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
AXK03610.1|3385089_3385971_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AXK03611.1|3385981_3386740_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AXK04419.1|3386708_3387464_+	hypothetical protein	NA	NA	NA	NA	NA
AXK03612.1|3387533_3388952_+	amidase	NA	NA	NA	NA	NA
AXK03613.1|3388973_3389624_-	carbonic anhydrase	NA	NA	NA	NA	NA
AXK03614.1|3389757_3390093_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
AXK03615.1|3390180_3391131_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK03616.1|3391207_3393028_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
AXK03617.1|3393032_3394106_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
AXK03618.1|3394228_3395197_+	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
AXK03619.1|3395270_3396182_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
AXK03620.1|3396200_3396773_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
AXK03621.1|3396853_3397402_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
AXK03622.1|3397401_3398991_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
AXK03623.1|3399060_3399300_-	Fis family transcriptional regulator	NA	NA	NA	NA	NA
AXK03624.1|3399340_3400372_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
AXK03625.1|3400431_3401613_-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
AXK03626.1|3401709_3402162_+	hypothetical protein	NA	NA	NA	NA	NA
AXK03627.1|3402171_3403512_-	peptidase M24 family protein	NA	NA	NA	NA	NA
AXK03628.1|3403828_3404866_+	sodium:calcium antiporter	NA	NA	NA	NA	NA
AXK03629.1|3405247_3405607_+	hypothetical protein	NA	NA	NA	NA	NA
AXK04420.1|3405690_3406632_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AXK03630.1|3406706_3407657_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK03631.1|3407950_3409045_+	porin	NA	NA	NA	NA	NA
AXK03632.1|3409126_3410008_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
AXK03633.1|3410029_3410869_-	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
AXK03634.1|3410944_3412462_+	peptidase	NA	NA	NA	NA	NA
AXK03635.1|3412558_3413659_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
AXK03636.1|3413675_3414098_-	DUF4440 domain-containing protein	NA	NA	NA	NA	NA
AXK03637.1|3414120_3414333_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
AXK03638.1|3414379_3415300_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
AXK04421.1|3415563_3416232_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AXK03639.1|3416234_3416564_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
AXK03640.1|3416770_3418204_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
AXK03641.1|3418215_3418599_-	thioredoxin	NA	NA	NA	NA	NA
AXK03642.1|3418660_3419461_+	hypothetical protein	NA	NA	NA	NA	NA
AXK03643.1|3419558_3420509_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
CP031289	Bordetella pertussis strain UK36 chromosome, complete genome	4107923	3708167	3841086	4107923	integrase,tRNA,transposase	uncultured_Mediterranean_phage(10.34%)	117	3756120:3756179	3845534:3846587
AXK03888.1|3708167_3709118_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK03889.1|3709114_3709750_-	transporter	NA	NA	NA	NA	NA
AXK03890.1|3709879_3710779_+	LysR family transcriptional regulator ArgP	NA	NA	NA	NA	NA
AXK03891.1|3710874_3711366_+	copper chaperone PCu(A)C	NA	NA	NA	NA	NA
AXK03892.1|3711412_3712378_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK03893.1|3713511_3714753_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	24.9	1.9e-14
AXK03894.1|3714866_3715883_+	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	43.8	3.5e-75
AXK03895.1|3715917_3716394_-	hypothetical protein	NA	NA	NA	NA	NA
AXK03896.1|3716536_3717445_-	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
AXK03897.1|3717558_3718671_-	DNA-protecting protein DprA	NA	S6BFL3	Thermus_phage	35.0	1.9e-21
AXK03898.1|3718771_3719305_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AXK03899.1|3719393_3720644_+	kynureninase	NA	NA	NA	NA	NA
AXK03900.1|3720745_3721258_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	43.3	8.5e-22
AXK03901.1|3721355_3722306_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK03902.1|3722371_3723310_+|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	35.7	1.4e-09
AXK03903.1|3723332_3723959_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
AXK03904.1|3723955_3724612_-	HAD family hydrolase	NA	NA	NA	NA	NA
AXK03905.1|3724608_3725211_-	hypothetical protein	NA	NA	NA	NA	NA
AXK03906.1|3725217_3725844_-	TIGR00730 family Rossman fold protein	NA	A0A2I2L3F0	Orpheovirus	23.3	1.5e-07
AXK03907.1|3725985_3726555_+	bacterioferritin	NA	NA	NA	NA	NA
AXK03908.1|3726625_3727945_-	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA	NA
AXK03909.1|3728051_3728243_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
AXK03910.1|3728494_3729784_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
AXK03911.1|3729938_3730934_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK03912.1|3731018_3731693_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AXK03913.1|3731689_3732640_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK03914.1|3732626_3732809_-	hypothetical protein	NA	NA	NA	NA	NA
AXK03915.1|3732801_3734043_+	ornithine--oxo-acid transaminase	NA	A0A1V0SKB7	Klosneuvirus	25.2	4.0e-25
AXK03916.1|3734039_3734984_+	arginase	NA	A0A0N9R043	Chrysochromulina_ericina_virus	33.3	9.5e-27
AXK03917.1|3735102_3736053_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK03918.1|3736012_3736942_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK03919.1|3736995_3737331_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
AXK03920.1|3737375_3738140_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AXK03921.1|3738163_3738904_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AXK03922.1|3738911_3740486_-	long-chain fatty acid--CoA ligase	NA	A0A2K9L3I8	Tupanvirus	22.6	2.0e-13
AXK03923.1|3740499_3741477_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK03924.1|3741749_3742349_-	ureidoglycolate hydrolase	NA	NA	NA	NA	NA
AXK03925.1|3742382_3749285_-	autotransporter BatB	NA	NA	NA	NA	NA
AXK03926.1|3749731_3749863_-	entericidin, EcnA/B family	NA	NA	NA	NA	NA
AXK03927.1|3749894_3750056_-	hypothetical protein	NA	NA	NA	NA	NA
AXK03928.1|3750128_3750335_-	DUF3596 domain-containing protein	NA	NA	NA	NA	NA
AXK03929.1|3751339_3751999_+	HAD family hydrolase	NA	NA	NA	NA	NA
AXK03930.1|3752026_3753172_+	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
AXK03931.1|3753312_3753648_+	DUF1508 domain-containing protein	NA	NA	NA	NA	NA
AXK03932.1|3753722_3754583_-	prohibitin family protein	NA	A0A2C9D0H9	Yersinia_phage	53.6	1.7e-51
AXK03933.1|3754846_3755548_-	glutathione S-transferase	NA	NA	NA	NA	NA
AXK03934.1|3755717_3756113_+	RidA family protein	NA	NA	NA	NA	NA
3756120:3756179	attL	GCTAGGTGTGAAGATTCAATAGGTTGTATGCATGGTTCATCCGAACCGGATTTGAGAAAC	NA	NA	NA	NA
AXK03935.1|3756221_3757172_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK03936.1|3757182_3757824_+	hypothetical protein	NA	NA	NA	NA	NA
AXK03937.1|3757990_3758233_+	hypothetical protein	NA	NA	NA	NA	NA
AXK03938.1|3758330_3759281_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK03939.1|3759316_3759784_+	hypothetical protein	NA	Q3HQX1	Burkholderia_phage	71.3	2.1e-43
AXK03940.1|3760017_3760395_+	hypothetical protein	NA	NA	NA	NA	NA
AXK03941.1|3760391_3760574_+	hypothetical protein	NA	NA	NA	NA	NA
AXK03942.1|3760577_3761564_+	DNA recombinase	NA	H9C0R8	Aeromonas_phage	57.3	2.0e-67
AXK03943.1|3761560_3762208_+	exonuclease	NA	A0A0U2BXF3	Paracoccus_phage	41.4	2.0e-31
AXK03944.1|3762265_3762793_+	hypothetical protein	NA	NA	NA	NA	NA
AXK03945.1|3762826_3764014_+	hypothetical protein	NA	A0A291L9X3	Bordetella_phage	37.8	1.5e-24
AXK03946.1|3764003_3764366_+	hypothetical protein	NA	A0A0H5ARN8	Pseudomonas_phage	47.9	1.8e-13
AXK03947.1|3764358_3764478_+	hypothetical protein	NA	NA	NA	NA	NA
AXK03948.1|3764478_3764679_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AXK03949.1|3764675_3765665_-|integrase	site-specific integrase	integrase	A0A1B1P9F9	Acinetobacter_phage	44.4	4.4e-75
AXK03950.1|3767151_3769122_-	DUF3120 domain-containing protein	NA	NA	NA	NA	NA
AXK03951.1|3769363_3769762_+	hypothetical protein	NA	NA	NA	NA	NA
AXK03952.1|3769770_3770694_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXK03953.1|3771150_3772101_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK03954.1|3772331_3774023_-	membrane protein insertase YidC	NA	NA	NA	NA	NA
AXK03955.1|3774071_3774344_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	52.2	7.0e-15
AXK03956.1|3774340_3774712_-	ribonuclease P protein component	NA	NA	NA	NA	NA
AXK03957.1|3774807_3774942_-	50S ribosomal protein L34	NA	NA	NA	NA	NA
AXK03958.1|3775347_3776757_+	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
AXK03959.1|3776753_3777869_+	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	32.6	1.6e-41
AXK03960.1|3777963_3780417_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	34.8	2.3e-112
AXK03961.1|3780535_3781327_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AXK03962.1|3781446_3782874_+	amidase	NA	NA	NA	NA	NA
AXK04433.1|3782912_3783884_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK03963.1|3784302_3785466_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
AXK03964.1|3785553_3786399_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AXK03965.1|3787954_3788905_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK03966.1|3789459_3789834_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
AXK03967.1|3789908_3790967_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AXK03968.1|3790990_3791941_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK03969.1|3794821_3795991_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
AXK04434.1|3796091_3797699_+	methylcrotonoyl-CoA carboxylase	NA	A0A1B2ITV7	Pike_perch_iridovirus	57.3	5.4e-22
AXK03970.1|3797745_3799767_+	acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha	NA	NA	NA	NA	NA
AXK03971.1|3799795_3800041_-	DUF1653 domain-containing protein	NA	NA	NA	NA	NA
AXK03972.1|3800054_3801245_-	acetylornithine transaminase	NA	A0A1V0SKB7	Klosneuvirus	26.7	4.4e-21
AXK03973.1|3801440_3802406_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK03974.1|3802428_3803568_-	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
AXK03975.1|3803779_3804742_+	immunogenic protein	NA	NA	NA	NA	NA
AXK03976.1|3804865_3806890_+	TRAP transporter permease	NA	NA	NA	NA	NA
AXK03977.1|3807086_3809330_+	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA	NA
AXK03978.1|3809608_3810067_+	DUF494 domain-containing protein	NA	NA	NA	NA	NA
AXK03979.1|3810994_3813616_-	DUF4401 domain-containing protein	NA	NA	NA	NA	NA
AXK03980.1|3813679_3816307_+	DNA topoisomerase III	NA	A0A0G2YA05	Acanthamoeba_polyphaga_mimivirus	25.4	6.1e-23
AXK03981.1|3816458_3817523_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK03982.1|3817519_3818293_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.9	8.1e-24
AXK03983.1|3818301_3819135_+	ABC transporter permease	NA	NA	NA	NA	NA
AXK03984.1|3819147_3819927_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
AXK04435.1|3819961_3821434_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
AXK03985.1|3821461_3822220_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
AXK03986.1|3822275_3824126_-	biosynthetic-type acetolactate synthase large subunit	NA	E4WLQ6	Ostreococcus_tauri_virus	30.4	2.2e-59
AXK03987.1|3824219_3824696_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AXK03988.1|3824712_3825633_-	bestrophin	NA	NA	NA	NA	NA
AXK03989.1|3825739_3826240_+	SET domain-containing protein	NA	NA	NA	NA	NA
AXK03990.1|3826613_3827306_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	41.6	6.3e-36
AXK03991.1|3827613_3828564_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK03992.1|3828560_3832334_-	methionine synthase	NA	A0A140XBC7	Dickeya_phage	50.8	8.6e-10
AXK03993.1|3832670_3834560_+	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	30.8	7.6e-07
AXK03994.1|3834571_3835465_+	cobalamin-binding protein	NA	NA	NA	NA	NA
AXK03995.1|3835490_3836366_+	thiazole synthase	NA	NA	NA	NA	NA
AXK03996.1|3836362_3837214_+	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
AXK03997.1|3837275_3837956_+	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	34.8	3.5e-15
AXK03998.1|3837959_3838319_+	hypothetical protein	NA	NA	NA	NA	NA
AXK03999.1|3838319_3839279_+	hypothetical protein	NA	NA	NA	NA	NA
AXK04000.1|3839299_3839788_-	D-beta-D-heptose 1-phosphate adenylyltransferase	NA	A0A1B1IUK5	uncultured_Mediterranean_phage	34.1	1.6e-17
AXK04001.1|3840069_3841086_+|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
3845534:3846587	attR	GTTTCTCAAATCCGGTTCGGATGAACCATGCATACAACCTATTGAATCTTCACACCTAGCGCTGAAGGGCCTCGTGCTAGGCCGGCCGCTATGCCGGCGCCAGTTCCACCGTCAGGTGCCTGACTTCGTGGATCGACGACACGCGTTCCCGTATCTGGCTGGCCGTGACTCCACGGGCAATTACCAGGGCGCCCGCGTGCGTTGCCATGTTTTCCCGCGACGCCGCGCGTCGCGCCAGGGCCACAGACCTTGCCGCCACCTTGCGGCAATGCAAAATTCGACTGCTTGCCTTTGACAGCCATGGATAACTAAGTTAAGCTGAAGGGCTTACTGCTTTATCTGCGTGCAATTTCGGCATGGCAGGTTCAAGCCGGTAATGCCCATACACCGATCGGTCTGAAGCCCGCCAACCCATGAGGGTCGGCAAAGGCTTGCGCCAGCTCCCGGAAGCATGTTGCAGGTATTTCGGGCCGGGGTGCGTCACGAGCCCTCTATCCTGGATGCATCGATCGTTGTAAGGCACCGCCGGCCTGGCCATGCAGTGTTGTACGCATTATTTGTCTGCAAGACCCGCTCTTTTACGTAAACGAACGTTTGAGGCGGTTTTGCGTGAACTGCCTCCCCCTCGCTTGGGGCCAGATTGGTCGCCGAATGCTGGGAGGGTGCGAGTACGTAAGTACTTACCAGTGGTACGTAAAAGGGATTTCAAAGGTCATGCCTACCATTAGCCAGCTCGTGCGCAAGCCGCGCGAAGTCAGCATCATCAAGAGCAAGAGCCCCGCGCTCGAGAACTGCCCGCAGCGTCGCGGCGTTTGCACTCGCGTCTACACCACCACCCCCAAGAAGCCGAACTCCGCGCTGCGTAAGGTTGCCAAGGTGCGTCTGACCAACGGTTACGAAGTCATTTCGTACATCGGCGGTGAAGGCCACAACCTGCAGGAGCACTCGGTGGTTCTGGTGCGTGGCGGTCGTGTCAAGGACTTGCCCGGTGTGCGTTATCACATCGTGCGCGGTTCCCTCGACCTGCAAGGCGTCAAGGATCGCAAACAGGCTC	NA	NA	NA	NA
>prophage 31
CP031289	Bordetella pertussis strain UK36 chromosome, complete genome	4107923	4006993	4071904	4107923	transposase	Planktothrix_phage(40.0%)	58	NA	NA
AXK04165.1|4006993_4007479_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AXK04166.1|4007697_4008678_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK04167.1|4008944_4009754_+	Pertussis toxin subunit 1	NA	NA	NA	NA	NA
AXK04168.1|4009793_4010474_+	Pertussis toxin subunit 2	NA	NA	NA	NA	NA
AXK04169.1|4010467_4010926_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
AXK04170.1|4010937_4011300_+	Pertussis toxin subunit 5	NA	NA	NA	NA	NA
AXK04171.1|4011382_4012066_+	Pertussis toxin subunit 3	NA	NA	NA	NA	NA
AXK04172.1|4012121_4012430_+	type IV secretion protein A	NA	NA	NA	NA	NA
AXK04173.1|4012448_4012763_+	type IV secretion protein B	NA	NA	NA	NA	NA
AXK04174.1|4012759_4015234_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
AXK04175.1|4015241_4016633_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
AXK04176.1|4016629_4016815_+	type IV secretion protein I	NA	NA	NA	NA	NA
AXK04177.1|4016793_4017495_+	type IV secretion protein E	NA	NA	NA	NA	NA
AXK04178.1|4017491_4018313_+	P-type conjugative transfer protein VirB9	NA	NA	NA	NA	NA
AXK04444.1|4018293_4019418_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
AXK04179.1|4019410_4020430_+	type IV secretion protein H	NA	NA	NA	NA	NA
AXK04180.1|4020635_4021670_-	DMT family transporter	NA	NA	NA	NA	NA
AXK04445.1|4021770_4022562_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AXK04181.1|4022644_4023019_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
AXK04182.1|4022996_4024406_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
AXK04183.1|4024398_4025781_+	DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
AXK04184.1|4026115_4027720_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK04185.1|4027755_4028769_+	ABC transporter permease	NA	NA	NA	NA	NA
AXK04186.1|4028779_4029706_+	ABC transporter permease	NA	NA	NA	NA	NA
AXK04187.1|4030096_4031047_-|transposase	IS481 family transposase IS481	transposase	NA	NA	NA	NA
AXK04188.1|4031216_4032443_+	bifunctional glutamate N-acetyltransferase/amino-acid N-acetyltransferase	NA	NA	NA	NA	NA
AXK04189.1|4032642_4033509_+	ATP-binding protein	NA	NA	NA	NA	NA
AXK04190.1|4033501_4034464_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
AXK04191.1|4034564_4035515_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AXK04192.1|4035613_4036564_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK04193.1|4036662_4037613_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK04194.1|4037609_4039103_-	RND transporter	NA	NA	NA	NA	NA
AXK04195.1|4039099_4042207_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AXK04196.1|4042203_4045272_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AXK04197.1|4045268_4046519_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AXK04198.1|4046699_4047461_-	cell division protein ZapD	NA	NA	NA	NA	NA
AXK04199.1|4047493_4048144_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
AXK04200.1|4048146_4048986_-	prepilin peptidase	NA	NA	NA	NA	NA
AXK04201.1|4049226_4049970_+	hypothetical protein	NA	NA	NA	NA	NA
AXK04202.1|4050052_4050400_-	LuxR family transcriptional regulator	NA	NA	NA	NA	NA
AXK04203.1|4050497_4051340_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
AXK04204.1|4051384_4052272_-	segregation/condensation protein A	NA	NA	NA	NA	NA
AXK04205.1|4052298_4052487_-	DUF3460 family protein	NA	NA	NA	NA	NA
AXK04206.1|4052584_4054042_+	MFS transporter	NA	NA	NA	NA	NA
AXK04207.1|4054028_4055555_+	glycerol kinase	NA	NA	NA	NA	NA
AXK04208.1|4055573_4056041_-	hypothetical protein	NA	NA	NA	NA	NA
AXK04209.1|4056040_4057063_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK04210.1|4057183_4057924_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
AXK04211.1|4057978_4059079_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AXK04212.1|4059080_4060271_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AXK04213.1|4060390_4061407_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
AXK04214.1|4061725_4062397_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
AXK04215.1|4062393_4063302_+	ABC transporter permease	NA	NA	NA	NA	NA
AXK04216.1|4063513_4064161_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
AXK04217.1|4068012_4069089_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
AXK04218.1|4069099_4069909_-	transcriptional regulator	NA	NA	NA	NA	NA
AXK04219.1|4069998_4070772_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AXK04220.1|4070953_4071904_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
