assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003354985.1_ASM335498v1	CP022905	Staphylococcus aureus strain 628 chromosome, complete genome	1	170181-170265	1	CRISPRCasFinder	no		cas3,DEDDh,csa3,DinG,RT,WYL	Orphan	TTCTACAGGCAATGCAAGTTGGGGTG	26	1	2	170207-170239|170207-170239	CP022905.1_1693649-1693617|CP022905.1_1605295-1605327	NA	1	1	Orphan	cas3,DEDDh,csa3,DinG,RT,WYL	NA|402aa|up_9|CP022905.1_159326_160532_+,NA|68aa|down_0|CP022905.1_170326_170530_-	NA|402aa|up_9|CP022905.1_159326_160532_+	NA	NA|402aa|up_8|CP022905.1_160532_161738_+	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins	NA|186aa|up_7|CP022905.1_161748_162306_+	COG2148, WcaJ, Sugar transferases involved in lipopolysaccharide synthesis [Cell envelope biogenesis, outer membrane]	NA|296aa|up_6|CP022905.1_162305_163193_+	cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, subgroup 4, extended (e) SDRs	NA|421aa|up_5|CP022905.1_163246_164509_+	COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]	NA|382aa|up_4|CP022905.1_164585_165731_+	COG0381, WecB, UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]	NA|109aa|up_3|CP022905.1_165795_166122_-	PRK13313, PRK13313, staphylobilin-forming heme oxygenase IsdI	NA|128aa|up_2|CP022905.1_166128_166512_-	pfam04304, DUF454, Protein of unknown function (DUF454)	NA|496aa|up_1|CP022905.1_166938_168426_+	cd07117, ALDH_StaphAldA1, Uncharacterized Staphylococcus aureus AldA1 (SACOL0154) aldehyde dehydrogenase-like	NA|320aa|up_0|CP022905.1_169072_170032_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|68aa|down_0|CP022905.1_170326_170530_-	NA	NA|171aa|down_1|CP022905.1_170708_171221_+	pfam14026, DUF4242, Protein of unknown function (DUF4242)	NA|247aa|down_2|CP022905.1_171562_172303_+	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|324aa|down_3|CP022905.1_172316_173288_+	cd13553, PBP2_NrtA_CpmA_like, Substrate binding domain of ABC-type nitrate/bicarbonate transporters, a member of the type 2 periplasmic binding fold superfamily	NA|254aa|down_4|CP022905.1_173284_174046_+	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|345aa|down_5|CP022905.1_174055_175090_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|120aa|down_6|CP022905.1_175306_175666_+	COG5609, COG5609, Uncharacterized conserved protein [Function unknown]	NA|392aa|down_7|CP022905.1_175689_176865_+	PRK07574, PRK07574, NAD-dependent formate dehydrogenase	NA|417aa|down_8|CP022905.1_177250_178501_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|2392aa|down_9|CP022905.1_178947_186123_+	PRK12467, PRK12467, peptide synthase; Provisional
GCA_003354985.1_ASM335498v1	CP022905	Staphylococcus aureus strain 628 chromosome, complete genome	2	429971-430072	2	CRISPRCasFinder	no		cas3,DEDDh,csa3,DinG,RT,WYL	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,DinG,RT,WYL	NA|129aa|up_7|CP022905.1_422564_422951_-,NA|32aa|up_6|CP022905.1_423009_423105_+,NA|82aa|up_4|CP022905.1_423916_424162_-,NA|221aa|down_1|CP022905.1_431162_431825_-,NA|179aa|down_7|CP022905.1_437916_438453_-	NA|84aa|up_9|CP022905.1_421240_421492_+	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|194aa|up_8|CP022905.1_421917_422499_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|129aa|up_7|CP022905.1_422564_422951_-	NA	NA|32aa|up_6|CP022905.1_423009_423105_+	NA	NA|209aa|up_5|CP022905.1_423217_423844_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|82aa|up_4|CP022905.1_423916_424162_-	NA	NA|508aa|up_3|CP022905.1_424287_425811_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_2|CP022905.1_425826_426396_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_1|CP022905.1_426887_427643_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_0|CP022905.1_427722_429111_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|319aa|down_0|CP022905.1_430088_431045_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|221aa|down_1|CP022905.1_431162_431825_-	NA	NA|136aa|down_2|CP022905.1_431967_432375_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|CP022905.1_432887_433466_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|CP022905.1_433465_434734_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|CP022905.1_434771_436238_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|CP022905.1_436262_437804_+	PRK00074, guaA, GMP synthase; Reviewed	NA|179aa|down_7|CP022905.1_437916_438453_-	NA	NA|235aa|down_8|CP022905.1_438844_439549_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|91aa|down_9|CP022905.1_439947_440220_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCA_003354985.1_ASM335498v1	CP022905	Staphylococcus aureus strain 628 chromosome, complete genome	3	787356-787438	3	CRISPRCasFinder	no		cas3,DEDDh,csa3,DinG,RT,WYL	Orphan	CCAATTTCTACAGACAATGCAAGTTGG	27	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,DinG,RT,WYL	NA,NA	NA|203aa|up_9|CP022905.1_773295_773904_+	pfam01063, Aminotran_4, Amino-transferase class IV	NA|237aa|up_8|CP022905.1_774263_774974_+	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]	NA|335aa|up_7|CP022905.1_774957_775962_+	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]	NA|647aa|up_6|CP022905.1_776435_778376_+	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|626aa|up_5|CP022905.1_778651_780529_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|594aa|up_4|CP022905.1_780540_782322_+	TIGR01389, recQ, ATP-dependent DNA helicase RecQ	NA|326aa|up_3|CP022905.1_782543_783521_+	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|505aa|up_2|CP022905.1_783513_785028_+	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold	NA|353aa|up_1|CP022905.1_785267_786326_+	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional	NA|181aa|up_0|CP022905.1_786664_787207_+	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]	NA|306aa|down_0|CP022905.1_788085_789003_-	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|535aa|down_1|CP022905.1_789381_790986_+	pfam13751, DDE_Tnp_1_6, Transposase DDE domain	NA|502aa|down_2|CP022905.1_791112_792618_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|167aa|down_3|CP022905.1_792958_793459_-	COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General function prediction only]	NA|289aa|down_4|CP022905.1_793478_794345_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|133aa|down_5|CP022905.1_795145_795544_+	COG1780, NrdI, Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]	NA|702aa|down_6|CP022905.1_795506_797612_+	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|324aa|down_7|CP022905.1_797729_798701_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|338aa|down_8|CP022905.1_799033_800047_+	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]	NA|319aa|down_9|CP022905.1_800033_800990_+	COG4605, CeuC, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]
GCA_003354985.1_ASM335498v1	CP022905	Staphylococcus aureus strain 628 chromosome, complete genome	4	830143-830221	4	CRISPRCasFinder	no	cas3	cas3,DEDDh,csa3,DinG,RT,WYL	Unclear	TGTAGAATTTCTTTTCGAAATTCT	24	1	3	830167-830197|830167-830197|830167-830197	CP022905.1_295113-295083|CP022905.1_295058-295028|CP022905.1_1386498-1386468	NA	1	1	Unclear	cas3,DEDDh,csa3,DinG,RT,WYL	NA,NA	cas3|361aa|up_9|CP022905.1_815650_816733_+	COG4098, comFA, Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]	NA|225aa|up_8|CP022905.1_816725_817400_+	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only]	NA|191aa|up_7|CP022905.1_817460_818033_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|844aa|up_6|CP022905.1_818446_820978_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|331aa|up_5|CP022905.1_821410_822403_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|280aa|up_4|CP022905.1_822811_823651_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_3|CP022905.1_823824_824475_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_2|CP022905.1_824471_824708_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_1|CP022905.1_824976_826962_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_0|CP022905.1_826969_829816_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|down_0|CP022905.1_830479_831412_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|down_1|CP022905.1_831417_832257_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|down_2|CP022905.1_832264_832750_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|down_3|CP022905.1_832757_834197_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|down_4|CP022905.1_834263_835199_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_5|CP022905.1_836084_836996_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_6|CP022905.1_836992_837988_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_7|CP022905.1_838098_839043_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_8|CP022905.1_839606_840194_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|290aa|down_9|CP022905.1_840436_841306_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
GCA_003354985.1_ASM335498v1	CP022905	Staphylococcus aureus strain 628 chromosome, complete genome	5	835598-835867	1	CRT	no	cas3	cas3,DEDDh,csa3,DinG,RT,WYL	Unclear	TTCTCTGTGTTGGGGCCCACACCCCAACTNGCATTG	36	4	40	835634-835655|835634-835655|835634-835655|835634-835655|835634-835655|835634-835655|835634-835655|835634-835655|835634-835655|835634-835655|835634-835655|835634-835655|835634-835655|835692-835714|835692-835714|835692-835714|835692-835714|835692-835714|835692-835714|835692-835714|835751-835772|835751-835772|835751-835772|835751-835772|835751-835772|835751-835772|835751-835772|835751-835772|835751-835772|835751-835772|835751-835772|835751-835772|835751-835772|835809-835831|835809-835831|835809-835831|835809-835831|835809-835831|835809-835831|835809-835831	CP022905.1_170189-170168|CP022905.1_295029-295008|CP022905.1_295139-295118|CP022905.1_660665-660644|CP022905.1_786397-786418|CP022905.1_897500-897521|CP022905.1_1086580-1086559|CP022905.1_1406349-1406370|CP022905.1_1420904-1420883|CP022905.1_1693725-1693746|CP022905.1_1386410-1386389|CP022905.1_1386643-1386622|CP022905.1_2176861-2176840|CP022905.1_787369-787347|CP022905.1_787647-787625|CP022905.1_1086522-1086500|CP022905.1_1693608-1693630|CP022905.1_2401700-2401722|CP022905.1_984211-984189|CP022905.1_1605336-1605314|CP022905.1_170189-170168|CP022905.1_295029-295008|CP022905.1_295139-295118|CP022905.1_660665-660644|CP022905.1_786397-786418|CP022905.1_897500-897521|CP022905.1_1086580-1086559|CP022905.1_1406349-1406370|CP022905.1_1420904-1420883|CP022905.1_1693725-1693746|CP022905.1_1386410-1386389|CP022905.1_1386643-1386622|CP022905.1_2176861-2176840|CP022905.1_787369-787347|CP022905.1_787647-787625|CP022905.1_1086522-1086500|CP022905.1_1693608-1693630|CP022905.1_2401700-2401722|CP022905.1_984211-984189|CP022905.1_1605336-1605314	NA	4	4	Unclear	cas3,DEDDh,csa3,DinG,RT,WYL	NA,NA	NA|280aa|up_9|CP022905.1_822811_823651_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_8|CP022905.1_823824_824475_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_7|CP022905.1_824471_824708_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_6|CP022905.1_824976_826962_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_5|CP022905.1_826969_829816_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|up_4|CP022905.1_830479_831412_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|up_3|CP022905.1_831417_832257_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_2|CP022905.1_832264_832750_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_1|CP022905.1_832757_834197_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|up_0|CP022905.1_834263_835199_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_0|CP022905.1_836084_836996_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_1|CP022905.1_836992_837988_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_2|CP022905.1_838098_839043_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_3|CP022905.1_839606_840194_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|290aa|down_4|CP022905.1_840436_841306_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|down_5|CP022905.1_842041_842671_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_6|CP022905.1_843371_844385_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_7|CP022905.1_844437_845448_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_8|CP022905.1_845586_846777_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|254aa|down_9|CP022905.1_846898_847660_+	PRK00042, tpiA, triosephosphate isomerase; Provisional
GCA_003354985.1_ASM335498v1	CP022905	Staphylococcus aureus strain 628 chromosome, complete genome	6	897427-897508	5	CRISPRCasFinder	no		cas3,DEDDh,csa3,DinG,RT,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	1	897451-897484	CP022905.1_1693617-1693650	NA	1	1	Orphan	cas3,DEDDh,csa3,DinG,RT,WYL	NA|38aa|up_1|CP022905.1_896329_896443_+,NA	NA|206aa|up_9|CP022905.1_891183_891801_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_8|CP022905.1_891955_892450_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_7|CP022905.1_892848_893271_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_6|CP022905.1_893418_894135_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_5|CP022905.1_894217_894757_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_4|CP022905.1_894907_895228_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_3|CP022905.1_895371_895728_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_2|CP022905.1_895885_896266_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|38aa|up_1|CP022905.1_896329_896443_+	NA	NA|293aa|up_0|CP022905.1_896444_897323_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|130aa|down_0|CP022905.1_898115_898505_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|CP022905.1_898497_898794_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|CP022905.1_899043_900069_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|CP022905.1_900061_900757_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|CP022905.1_900774_901596_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|65aa|down_5|CP022905.1_901949_902144_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_6|CP022905.1_902377_903229_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_7|CP022905.1_903556_904318_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|down_8|CP022905.1_904415_905723_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|414aa|down_9|CP022905.1_905837_907079_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily
GCA_003354985.1_ASM335498v1	CP022905	Staphylococcus aureus strain 628 chromosome, complete genome	7	984211-984292	6	CRISPRCasFinder	no		cas3,DEDDh,csa3,DinG,RT,WYL	Orphan	ACAATGCAAGTTGGGGTGGGGGCC	24	1	5	984235-984268|984235-984268|984235-984268|984235-984268|984235-984268	CP022905.1_830175-830142|CP022905.1_1906666-1906633|CP022905.1_1294382-1294349|CP022905.1_1689243-1689276|CP022905.1_2870588-2870555	NA	1	1	Orphan	cas3,DEDDh,csa3,DinG,RT,WYL	NA,NA|56aa|down_7|CP022905.1_992790_992958_-,NA|49aa|down_9|CP022905.1_993209_993356_-	NA|206aa|up_9|CP022905.1_973072_973690_-	COG4512, AgrB, Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Transcription]	NA|45aa|up_8|CP022905.1_973871_974006_+	PRK14752, PRK14752, delta-lysin family phenol-soluble modulin	NA|262aa|up_7|CP022905.1_974605_975391_-	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|209aa|up_6|CP022905.1_975751_976378_-	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only]	NA|403aa|up_5|CP022905.1_976574_977783_+	TIGR04526, predic_Ig_block, putative immunoglobulin-blocking virulence protein	NA|248aa|up_4|CP022905.1_977807_978551_-	pfam02517, Abi, CAAX protease self-immunity	NA|95aa|up_3|CP022905.1_978725_979010_+	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|539aa|up_2|CP022905.1_979085_980702_+	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|440aa|up_1|CP022905.1_981364_982684_+	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|436aa|up_0|CP022905.1_982761_984069_-	TIGR00933, Trk_system_potassium_uptake_protein_trkH	NA|408aa|down_0|CP022905.1_984512_985736_-	PRK08588, PRK08588, succinyl-diaminopimelate desuccinylase; Reviewed	NA|391aa|down_1|CP022905.1_986074_987247_+	pfam00872, Transposase_mut, Transposase, Mutator family	NA|352aa|down_2|CP022905.1_987503_988559_+	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|339aa|down_3|CP022905.1_988580_989597_+	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|275aa|down_4|CP022905.1_989834_990659_-	TIGR03395, Sphingomyelinase_C, sphingomyelin phosphodiesterase	NA|346aa|down_5|CP022905.1_990715_991753_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|235aa|down_6|CP022905.1_991946_992651_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|56aa|down_7|CP022905.1_992790_992958_-	NA	NA|62aa|down_8|CP022905.1_993027_993213_-	pfam00815, Histidinol_dh, Histidinol dehydrogenase	NA|49aa|down_9|CP022905.1_993209_993356_-	NA
GCA_003354985.1_ASM335498v1	CP022905	Staphylococcus aureus strain 628 chromosome, complete genome	8	1420896-1420980	7	CRISPRCasFinder	no		cas3,DEDDh,csa3,DinG,RT,WYL	Orphan	TTCTACAGGCAATGCAAGTTGGGGTG	26	1	1	1420922-1420954	CP022905.1_1693649-1693617	NA	1	1	Orphan	cas3,DEDDh,csa3,DinG,RT,WYL	NA,NA	NA|190aa|up_9|CP022905.1_1411525_1412095_+	TIGR00482, Probable_nicotinate-nucleotide_adenylyltransferase, nicotinate (nicotinamide) nucleotide adenylyltransferase	NA|195aa|up_8|CP022905.1_1412084_1412669_+	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]	NA|118aa|up_7|CP022905.1_1412669_1413023_+	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown]	NA|239aa|up_6|CP022905.1_1413025_1413742_+	pfam13649, Methyltransf_25, Methyltransferase domain	NA|226aa|up_5|CP022905.1_1413790_1414468_+	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair]	NA|144aa|up_4|CP022905.1_1414589_1415021_+	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2	NA|734aa|up_3|CP022905.1_1415025_1417227_+	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]	NA|325aa|up_2|CP022905.1_1417283_1418258_+	PRK05574, holA, DNA polymerase III subunit delta; Reviewed	NA|84aa|up_1|CP022905.1_1418302_1418554_-	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed	NA|608aa|up_0|CP022905.1_1418899_1420723_+	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|386aa|down_0|CP022905.1_1421255_1422413_+	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|326aa|down_1|CP022905.1_1422513_1423491_+	TIGR00331, Heat-inducible_transcription_repressor_HrcA, heat shock gene repressor HrcA	NA|209aa|down_2|CP022905.1_1423522_1424149_+	PRK14140, PRK14140, heat shock protein GrpE; Provisional	NA|611aa|down_3|CP022905.1_1424217_1426050_+	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|380aa|down_4|CP022905.1_1426185_1427325_+	PRK14280, PRK14280, molecular chaperone DnaJ	NA|313aa|down_5|CP022905.1_1427328_1428267_+	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|251aa|down_6|CP022905.1_1428268_1429021_+	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown]	NA|449aa|down_7|CP022905.1_1429027_1430374_+	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|59aa|down_8|CP022905.1_1430666_1430843_+	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|236aa|down_9|CP022905.1_1431062_1431770_+	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
GCA_003354985.1_ASM335498v1	CP022905	Staphylococcus aureus strain 628 chromosome, complete genome	9	2292165-2292245	8	CRISPRCasFinder	no	csa3	cas3,DEDDh,csa3,DinG,RT,WYL	Type I-A	CAACTTTAGTTGTTAGGGGCTCTT	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,DinG,RT,WYL	NA|77aa|up_5|CP022905.1_2287039_2287270_-,NA|364aa|up_0|CP022905.1_2291056_2292148_+,NA	NA|237aa|up_9|CP022905.1_2282650_2283361_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|CP022905.1_2283481_2283925_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|CP022905.1_2284124_2284538_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|CP022905.1_2284994_2286368_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|CP022905.1_2287039_2287270_-	NA	NA|313aa|up_4|CP022905.1_2287300_2288239_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|CP022905.1_2288674_2289340_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|CP022905.1_2289491_2289812_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|326aa|up_1|CP022905.1_2289813_2290791_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|CP022905.1_2291056_2292148_+	NA	NA|286aa|down_0|CP022905.1_2294180_2295038_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_1|CP022905.1_2295105_2295888_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_2|CP022905.1_2296119_2297925_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_3|CP022905.1_2298605_2300144_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_4|CP022905.1_2300178_2302311_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_5|CP022905.1_2302322_2302757_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_6|CP022905.1_2302756_2303863_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|2482aa|down_7|CP022905.1_2304181_2311627_-	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain	NA|452aa|down_8|CP022905.1_2311904_2313260_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|311aa|down_9|CP022905.1_2313286_2314219_-	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]
GCA_003354985.1_ASM335498v1	CP022905	Staphylococcus aureus strain 628 chromosome, complete genome	11	2412529-2412609	10	CRISPRCasFinder	no		cas3,DEDDh,csa3,DinG,RT,WYL	Orphan	TCTATGTTGGGGCCCCGCCAACTTG	25	1	12	2412554-2412584|2412554-2412584|2412554-2412584|2412554-2412584|2412554-2412584|2412554-2412584|2412554-2412584|2412554-2412584|2412554-2412584|2412554-2412584|2412554-2412584|2412554-2412584	CP022905.1_842886-842916|CP022905.1_70386-70416|CP022905.1_374987-374957|CP022905.1_660729-660699|CP022905.1_897762-897792|CP022905.1_1087928-1087898|CP022905.1_1406286-1406316|CP022905.1_1605283-1605253|CP022905.1_1693661-1693691|CP022905.1_1899703-1899733|CP022905.1_2401753-2401783|CP022905.1_2577298-2577328	NA	1	1	Orphan	cas3,DEDDh,csa3,DinG,RT,WYL	NA|55aa|up_8|CP022905.1_2403062_2403227_+,NA|106aa|up_7|CP022905.1_2403471_2403789_+,NA|84aa|up_4|CP022905.1_2408910_2409162_+,NA	NA|303aa|up_9|CP022905.1_2402021_2402930_-	COG0679, COG0679, Predicted permeases [General function prediction only]	NA|55aa|up_8|CP022905.1_2403062_2403227_+	NA	NA|106aa|up_7|CP022905.1_2403471_2403789_+	NA	NA|1056aa|up_6|CP022905.1_2403972_2407140_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_5|CP022905.1_2407256_2408522_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_4|CP022905.1_2408910_2409162_+	NA	NA|255aa|up_3|CP022905.1_2409153_2409918_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_2|CP022905.1_2410079_2410520_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_1|CP022905.1_2410512_2411724_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_0|CP022905.1_2411825_2412176_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|341aa|down_0|CP022905.1_2412752_2413775_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|CP022905.1_2413794_2414394_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|CP022905.1_2414400_2414634_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|CP022905.1_2414639_2415086_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|CP022905.1_2415099_2415585_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|CP022905.1_2415581_2416841_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|CP022905.1_2416903_2417398_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|CP022905.1_2417399_2417906_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|CP022905.1_2417936_2418941_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|CP022905.1_2419110_2419716_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
