The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP022908	Staphylococcus aureus strain 545 chromosome, complete genome	2935463	52470	58311	2935463		Streptococcus_phage(75.0%)	8	NA	NA
AXJ82210.1|52470_53145_+	Integrase core domain protein	NA	A0A0N9SKD3	Staphylococcus_phage	100.0	6.2e-129
AXJ82211.1|53186_53549_-	bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor	NA	A0A1B0RXM1	Streptococcus_phage	100.0	1.2e-57
AXJ82212.1|53824_54619_-	Aminoglycoside 3'-phosphotransferase	NA	E4ZFP6	Streptococcus_phage	100.0	2.3e-154
AXJ82213.1|54711_55254_-	TDP-fucosamine acetyltransferase	NA	A0A1B0RXL7	Streptococcus_phage	99.4	2.0e-93
AXJ82214.1|55250_56159_-	Aminoglycoside 6-adenylyltransferase	NA	E4ZFP8	Streptococcus_phage	100.0	2.8e-177
AXJ82215.1|56191_56926_-	putative methyltransferase YcgJ	NA	A0A1X9I6N4	Streptococcus_phage	100.0	1.5e-141
AXJ82216.1|56906_57590_-	hypothetical protein	NA	A0A1X9I6C9	Streptococcus_phage	99.1	4.1e-128
AXJ82217.1|57636_58311_-	Integrase core domain protein	NA	A0A0N9RU54	Staphylococcus_phage	99.1	2.0e-127
>prophage 2
CP022908	Staphylococcus aureus strain 545 chromosome, complete genome	2935463	753418	761238	2935463		Hokovirus(16.67%)	10	NA	NA
AXJ82832.1|753418_754474_-	Histidine protein kinase SaeS	NA	A0A1V0SGX0	Hokovirus	30.0	2.1e-14
AXJ82833.1|754473_755160_-	Response regulator SaeR	NA	NA	NA	NA	NA
AXJ82834.1|755134_755608_-	DoxX	NA	NA	NA	NA	NA
AXJ82835.1|755949_756390_-	Electron transfer DM13	NA	NA	NA	NA	NA
AXJ82836.1|756669_757254_-	hypothetical protein	NA	NA	NA	NA	NA
AXJ82837.1|757352_758066_-	7-carboxy-7-deazaguanine synthase	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
AXJ82838.1|758069_758489_-	6-carboxy-5,6,7,8-tetrahydropterin synthase	NA	S4U060	uncultured_phage	28.7	6.3e-07
AXJ82839.1|758490_759159_-	7-cyano-7-deazaguanine synthase	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
AXJ82840.1|759509_760103_+	Anthranilate synthase component 2	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
AXJ82841.1|760086_761238_+	Aminodeoxychorismate synthase component 1	NA	A0A0B5J984	Pandoravirus	35.7	1.6e-23
>prophage 3
CP022908	Staphylococcus aureus strain 545 chromosome, complete genome	2935463	773210	787941	2935463		uncultured_Caudovirales_phage(50.0%)	12	NA	NA
AXJ82850.1|773210_774269_+	Histidinol-phosphate aminotransferase	NA	A0A1X6WGT4	Pacmanvirus	26.7	7.9e-22
AXJ82851.1|774619_775162_+	Putative 5'(3')-deoxyribonucleotidase	NA	NA	NA	NA	NA
AXJ82852.1|775785_776703_-	Putative lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	3.7e-07
AXJ82853.1|776972_778478_-	Di-/tripeptide transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
AXJ82854.1|778818_779319_-	NADPH-dependent 7-cyano-7-deazaguanine reductase	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
AXJ82855.1|779338_780205_-	EamA-like transporter family protein	NA	NA	NA	NA	NA
AXJ82856.1|781005_781404_+	ribonucleotide reductase stimulatory protein	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
AXJ82857.1|781366_783472_+	Ribonucleoside-diphosphate reductase subunit alpha 2	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
AXJ82858.1|783589_784561_+	Ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
AXJ82859.1|785226_786240_+	Fe(3+) dicitrate transport system permease protein FecD	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.0	2.2e-138
AXJ82860.1|786226_787183_+	Iron-uptake system permease protein FeuC	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
AXJ82861.1|787179_787941_+	putative siderophore transport system ATP-binding protein YusV	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	8.5e-18
>prophage 4
CP022908	Staphylococcus aureus strain 545 chromosome, complete genome	2935463	867871	889080	2935463		Staphylococcus_phage(77.78%)	33	NA	NA
AXJ82940.1|867871_868897_+	Methionine import ATP-binding protein MetN 2	NA	G9BWD6	Planktothrix_phage	36.8	1.2e-27
AXJ82941.1|868889_869585_+	Methionine import system permease protein MetP	NA	NA	NA	NA	NA
AXJ82942.1|869602_870424_+	Methionine-binding lipoprotein MetQ precursor	NA	NA	NA	NA	NA
AXJ82943.1|870566_871787_-	Transposase	NA	Q4ZE80	Staphylococcus_phage	47.5	6.4e-100
AXJ82944.1|871875_872604_-	Enterotoxin type A precursor	NA	A0EX09	Staphylococcus_phage	32.3	1.9e-22
AXJ82945.1|872907_873357_-	Enterotoxin type E precursor	NA	A0EX09	Staphylococcus_phage	32.8	7.3e-09
AXJ82946.1|873426_873858_-	hypothetical protein	NA	Q4ZCB6	Staphylococcus_virus	56.0	5.1e-36
AXJ82947.1|873874_874333_-	hypothetical protein	NA	A0A0H4J322	Staphylococcus_phage	83.0	5.1e-66
AXJ82948.1|874344_874677_-	helix-turn-helix protein	NA	A0A1J0MFC1	Staphylococcus_phage	74.5	1.6e-37
AXJ82949.1|874869_875109_+	helix-turn-helix protein	NA	A0A2H4J9X2	uncultured_Caudovirales_phage	88.6	1.7e-33
AXJ82950.1|875124_875397_+	hypothetical protein	NA	Q4ZE77	Staphylococcus_phage	90.0	9.7e-41
AXJ82951.1|875408_875555_+	hypothetical protein	NA	NA	NA	NA	NA
AXJ82952.1|875547_875757_+	hypothetical protein	NA	Q4ZE76	Staphylococcus_phage	94.2	1.7e-29
AXJ82953.1|875759_876080_+	hypothetical protein	NA	Q4ZE75	Staphylococcus_phage	51.9	1.3e-20
AXJ82954.1|876143_877013_+	hypothetical protein	NA	A0A1W6JQL5	Staphylococcus_phage	92.7	3.4e-156
AXJ82955.1|877029_878487_+	Virulence-associated protein E	NA	A0A1W6JQD6	Staphylococcus_phage	96.1	1.0e-277
AXJ82956.1|878787_879150_+	hypothetical protein	NA	A0A1W6JQD5	Staphylococcus_phage	99.2	8.9e-66
AXJ82957.1|879151_879436_+	hypothetical protein	NA	A0A1W6JQE4	Staphylococcus_phage	95.7	1.9e-47
AXJ82958.1|879432_880074_+	hypothetical protein	NA	Q4ZE67	Staphylococcus_phage	91.5	1.5e-108
AXJ82959.1|880590_880932_+	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	99.1	1.4e-57
AXJ82960.1|880943_881522_+	hypothetical protein	NA	A0A2H4JBG0	uncultured_Caudovirales_phage	38.4	1.4e-28
AXJ82961.1|881539_881758_+	hypothetical protein	NA	NA	NA	NA	NA
AXJ82962.1|881808_882336_+	hypothetical protein	NA	A0A1W6JQH7	Staphylococcus_phage	97.1	3.5e-87
AXJ82963.1|882338_882680_+	hypothetical protein	NA	A0A1W6JQM3	Staphylococcus_phage	98.2	1.4e-57
AXJ82964.1|882676_883246_+	Terminase small subunit	NA	Q4ZE85	Staphylococcus_phage	97.9	1.0e-100
AXJ82965.1|883553_884354_+	Enterotoxin type B precursor	NA	A0A097PAT7	Streptococcus_pyogenes_phage	49.4	1.0e-53
AXJ82966.1|884431_884989_-	hypothetical protein	NA	A0A1W6JQE5	Staphylococcus_phage	73.8	1.4e-70
AXJ82967.1|885385_885514_+	hypothetical protein	NA	A0A0F6N3H2	Staphylococcus_phage	100.0	1.1e-15
AXJ82968.1|885584_885695_+	hypothetical protein	NA	W5R8J7	Staphylococcus_phage	94.4	2.4e-11
AXJ82969.1|885696_885882_+	hypothetical protein	NA	A0A0F6N3H3	Staphylococcus_phage	100.0	2.7e-26
AXJ82970.1|886712_886907_+	CsbD-like protein	NA	NA	NA	NA	NA
AXJ82971.1|887139_887991_-	hypothetical protein	NA	NA	NA	NA	NA
AXJ82972.1|888318_889080_+	YurY	NA	A0A1V0SE00	Indivirus	23.3	4.4e-06
>prophage 5
CP022908	Staphylococcus aureus strain 545 chromosome, complete genome	2935463	1112725	1159073	2935463	portal,holin,tail,head	Staphylococcus_phage(85.71%)	73	NA	NA
AXJ83178.1|1112725_1113208_+	Phosphopantetheine adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	46.2	2.6e-28
AXJ83179.1|1113269_1114409_-	hypothetical protein	NA	NA	NA	NA	NA
AXJ83180.1|1114535_1115093_+	hypothetical protein	NA	NA	NA	NA	NA
AXJ83181.1|1115172_1115346_+	50S ribosomal protein L32	NA	NA	NA	NA	NA
AXJ83182.1|1115462_1116848_-	DNA-invertase hin	NA	I1W625	Staphylococcus_phage	99.8	5.5e-265
AXJ83183.1|1117263_1117398_-	hypothetical protein	NA	Q4ZBN9	Staphylococcus_phage	84.8	4.5e-07
AXJ83184.1|1117415_1117877_-	hypothetical protein	NA	W5R9J0	Staphylococcus_phage	100.0	1.2e-83
AXJ83185.1|1117889_1118213_-	Antitoxin PezA	NA	A0A0H3U2V8	Staphylococcus_phage	100.0	2.0e-53
AXJ83186.1|1118376_1118625_+	Helix-turn-helix domain protein	NA	A0A2K9VBT6	Staphylococcus_phage	100.0	1.7e-39
AXJ83187.1|1118637_1119081_+	hypothetical protein	NA	W5R971	Staphylococcus_phage	99.3	4.4e-75
AXJ83188.1|1119095_1119275_+	hypothetical protein	NA	A0A0H3U490	Staphylococcus_phage	98.3	2.2e-25
AXJ83189.1|1119375_1119858_-	hypothetical protein	NA	A0A0N9BAX2	Staphylococcus_phage	100.0	1.1e-82
AXJ83190.1|1120303_1120489_+	helix-turn-helix protein	NA	A0A0H4IP57	Staphylococcus_phage	100.0	1.3e-25
AXJ83191.1|1120490_1121240_+	Phage antirepressor protein KilAC domain protein	NA	A0A0N7E0R7	Staphylococcus_phage	100.0	1.2e-136
AXJ83192.1|1121255_1121432_+	hypothetical protein	NA	S4SVC9	Staphylococcus_phage	98.3	2.8e-25
AXJ83193.1|1121406_1121637_-	hypothetical protein	NA	R4IG40	Staphylococcus_phage	100.0	2.3e-35
AXJ83194.1|1121695_1121824_+	hypothetical protein	NA	C8CGY4	Staphylococcus_phage	100.0	7.3e-15
AXJ83195.1|1121816_1121978_+	hypothetical protein	NA	Q4ZAZ7	Staphylococcus_virus	98.1	1.2e-19
AXJ83196.1|1122072_1122333_+	hypothetical protein	NA	Q4ZDR5	Staphylococcus_virus	97.7	1.7e-42
AXJ83197.1|1122342_1122564_+	hypothetical protein	NA	A0A1X9H047	Staphylococcus_phage	100.0	1.2e-33
AXJ83198.1|1122556_1123180_+	hypothetical protein	NA	A0A2H4PQQ6	Staphylococcus_phage	100.0	1.4e-114
AXJ83199.1|1123179_1123605_+	Single-stranded DNA-binding protein ssb	NA	B7T0A5	Staphylococcus_virus	88.7	1.6e-58
AXJ83200.1|1123615_1124167_+	NUMOD4 motif protein	NA	A0A2H4PQR4	Staphylococcus_phage	100.0	1.6e-106
AXJ83201.1|1124167_1124836_+	hypothetical protein	NA	A0A0E3XBQ6	Staphylococcus_phage	99.1	5.7e-127
AXJ83202.1|1124835_1125600_+	AP2 domain protein	NA	A0A2I6PDA5	Staphylococcus_phage	100.0	1.2e-144
AXJ83203.1|1125592_1126360_+	hypothetical protein	NA	A0A2I6PDA9	Staphylococcus_phage	96.1	7.1e-113
AXJ83204.1|1126369_1127143_+	DNA replication protein DnaC	NA	A0A2I6PDA0	Staphylococcus_phage	99.6	2.7e-144
AXJ83205.1|1127136_1127295_+	hypothetical protein	NA	A0A2I6PDX0	Staphylococcus_phage	96.2	5.8e-22
AXJ83206.1|1127307_1127529_+	hypothetical protein	NA	A0A1W6JQ35	Staphylococcus_phage	98.6	4.9e-35
AXJ83207.1|1127538_1127943_+	hypothetical protein	NA	C5I647	Staphylococcus_phage	100.0	1.6e-68
AXJ83208.1|1127947_1128133_+	hypothetical protein	NA	Q4ZA46	Staphylococcus_virus	100.0	4.1e-27
AXJ83209.1|1128133_1128748_+	PVL ORF-50-like family protein	NA	Q4ZAC3	Staphylococcus_virus	88.2	1.4e-66
AXJ83210.1|1128751_1128994_+	hypothetical protein	NA	A0A2D1G5G2	Staphylococcus_phage	97.5	1.2e-39
AXJ83211.1|1129006_1129408_+	hypothetical protein	NA	Q4ZAC1	Staphylococcus_virus	100.0	1.1e-69
AXJ83212.1|1129404_1129752_+	YopX protein	NA	D2JGL4	Staphylococcus_phage	100.0	5.9e-59
AXJ83213.1|1129748_1130057_+	hypothetical protein	NA	C8CH03	Staphylococcus_phage	97.1	3.1e-51
AXJ83214.1|1130049_1130286_+	hypothetical protein	NA	C8CH04	Staphylococcus_phage	100.0	1.1e-35
AXJ83215.1|1130290_1130827_+	dUTPase	NA	A0A1P8L6E0	Staphylococcus_phage	100.0	2.1e-95
AXJ83216.1|1130863_1131100_+	hypothetical protein	NA	C8CH06	Staphylococcus_phage	97.4	4.5e-34
AXJ83217.1|1131124_1131361_+	hypothetical protein	NA	S4SWB7	Staphylococcus_phage	91.0	2.2e-33
AXJ83218.1|1131350_1131527_+	Transcriptional activator RinB	NA	R4IFL3	Staphylococcus_phage	98.2	1.1e-21
AXJ83219.1|1131527_1131893_+	hypothetical protein	NA	Q4ZBJ9	Staphylococcus_phage	100.0	3.6e-59
AXJ83220.1|1131893_1132040_+	hypothetical protein	NA	Q4ZBJ8	Staphylococcus_phage	100.0	7.5e-16
AXJ83221.1|1132063_1132486_+	hypothetical protein	NA	Q4ZBJ7	Staphylococcus_phage	100.0	1.2e-74
AXJ83222.1|1132813_1133308_+	Terminase small subunit	NA	A0A0E3T9M2	Staphylococcus_phage	98.8	1.4e-82
AXJ83223.1|1133297_1134509_+	Terminase-like family protein	NA	A0A0E3TAL1	Staphylococcus_phage	100.0	1.6e-236
AXJ83224.1|1134522_1135941_+|portal	Phage portal protein, SPP1 Gp6-like	portal	R4IFL5	Staphylococcus_phage	99.8	2.3e-274
AXJ83225.1|1135897_1136860_+	NAD(+)--arginine ADP-ribosyltransferase EFV	NA	R4II65	Staphylococcus_phage	100.0	4.6e-178
AXJ83226.1|1136957_1137554_+	Phage minor structural protein GP20	NA	R4IG73	Staphylococcus_phage	100.0	5.6e-73
AXJ83227.1|1137574_1138399_+	hypothetical protein	NA	R4IH32	Staphylococcus_phage	100.0	5.6e-148
AXJ83228.1|1138415_1138742_+	hypothetical protein	NA	A0A0E3TAL3	Staphylococcus_phage	99.1	7.3e-51
AXJ83229.1|1138741_1139056_+|head,tail	Phage gp6-like head-tail connector protein	head,tail	R4IFL8	Staphylococcus_phage	100.0	4.0e-54
AXJ83230.1|1139048_1139384_+	hypothetical protein	NA	A0A0H4ISR6	Staphylococcus_phage	98.2	8.8e-60
AXJ83231.1|1139370_1139784_+	hypothetical protein	NA	R4IG77	Staphylococcus_phage	100.0	2.0e-77
AXJ83232.1|1139796_1140234_+	hypothetical protein	NA	A0A0E3T9M9	Staphylococcus_phage	100.0	2.1e-77
AXJ83233.1|1140220_1140781_+	hypothetical protein	NA	A0A0H4ITY2	Staphylococcus_phage	100.0	5.9e-101
AXJ83234.1|1140842_1141337_+	Phage protein	NA	R4IFM1	Staphylococcus_phage	100.0	4.3e-87
AXJ83235.1|1141357_1141699_+	hypothetical protein	NA	A0A2H4PQL5	Staphylococcus_phage	100.0	3.5e-56
AXJ83236.1|1141701_1144671_+	hypothetical protein	NA	Q4ZAG7	Staphylococcus_virus	99.1	1.9e-262
AXJ83237.1|1144685_1145621_+|tail	Phage tail protein	tail	R4IH41	Staphylococcus_phage	99.0	1.2e-178
AXJ83238.1|1145631_1147518_+|tail	Prophage endopeptidase tail	tail	R4IGA4	Staphylococcus_phage	99.8	0.0e+00
AXJ83239.1|1147530_1149429_+	hypothetical protein	NA	Q4ZBQ2	Staphylococcus_phage	99.4	0.0e+00
AXJ83240.1|1149428_1151252_+	hypothetical protein	NA	Q4ZBH7	Staphylococcus_virus	98.8	0.0e+00
AXJ83241.1|1151251_1151629_+	hypothetical protein	NA	A9CRC6	Staphylococcus_phage	100.0	5.6e-55
AXJ83242.1|1151629_1151806_+	hypothetical protein	NA	Q8LTH6	Staphylococcus_phage	100.0	6.1e-28
AXJ83243.1|1151846_1152146_+	hypothetical protein	NA	Q4ZBP8	Staphylococcus_phage	100.0	1.3e-46
AXJ83244.1|1152282_1154157_+	Bifunctional autolysin precursor	NA	Q4ZBP7	Staphylococcus_phage	99.5	0.0e+00
AXJ83245.1|1154169_1155408_+|tail	Phage tail repeat like protein	tail	Q4ZB96	Staphylococcus_virus	98.3	1.0e-206
AXJ83246.1|1155412_1155808_+	hypothetical protein	NA	A0A0H4IPB8	Staphylococcus_phage	97.7	8.8e-67
AXJ83247.1|1155862_1156300_+|holin	Bacteriophage holin	holin	S4SVG2	Staphylococcus_phage	99.3	4.1e-73
AXJ83248.1|1156280_1157726_+	putative cell wall hydrolase LytN precursor	NA	B2ZZ06	Staphylococcus_phage	99.2	5.9e-294
AXJ83249.1|1158391_1158703_+	hypothetical protein	NA	A0A2H4PQQ9	Staphylococcus_phage	100.0	4.1e-51
AXJ83250.1|1158689_1159073_+	hypothetical protein	NA	A0A2H4PQP6	Staphylococcus_phage	99.2	6.1e-65
>prophage 6
CP022908	Staphylococcus aureus strain 545 chromosome, complete genome	2935463	1549001	1637408	2935463	portal,lysis,terminase,protease,head,tRNA,tail,capsid,holin	Staphylococcus_phage(78.67%)	102	NA	NA
AXJ83578.1|1549001_1550294_-|tRNA	Asparagine--tRNA ligase	tRNA	A0A2P1EMB4	Moumouvirus	30.0	1.9e-54
AXJ83579.1|1550615_1553309_-	hypothetical protein	NA	A0A1X9I5C8	Streptococcus_phage	34.4	8.2e-47
AXJ83580.1|1553332_1554304_-	Bifunctional ligase/repressor BirA	NA	NA	NA	NA	NA
AXJ83581.1|1554290_1555493_-	CCA-adding enzyme	NA	H7BUW3	unidentified_phage	42.5	3.2e-35
AXJ83582.1|1555497_1556640_-	GDP-mannose-dependent alpha-(1-6)-phosphatidylinositol monomannoside mannosyltransferase	NA	NA	NA	NA	NA
AXJ83583.1|1556880_1557198_-	nucleoside triphosphate pyrophosphohydrolase	NA	NA	NA	NA	NA
AXJ83584.1|1557534_1558233_-	Putative neutral zinc metallopeptidase	NA	NA	NA	NA	NA
AXJ83585.1|1558286_1558874_-	hypothetical protein	NA	NA	NA	NA	NA
AXJ83586.1|1558863_1559451_-	hypothetical protein	NA	G3MAV7	Bacillus_virus	27.2	2.8e-08
AXJ83587.1|1559452_1560697_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
AXJ83588.1|1560703_1562002_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
AXJ83589.1|1562011_1563076_-	3-dehydroquinate synthase	NA	NA	NA	NA	NA
AXJ83590.1|1563101_1564268_-	Chorismate synthase	NA	A0A291AU41	Pandoravirus	32.1	7.6e-34
AXJ83591.1|1564653_1564854_-	hypothetical protein	NA	NA	NA	NA	NA
AXJ83592.1|1565062_1565512_-	Nucleoside diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.8	2.4e-28
AXJ83593.1|1565603_1566563_-	Heptaprenyl diphosphate synthase component 2	NA	A0A1V0SE37	Indivirus	24.4	1.3e-10
AXJ83594.1|1566564_1567290_-	Demethylmenaquinone methyltransferase	NA	NA	NA	NA	NA
AXJ83595.1|1567292_1567865_-	Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1	NA	NA	NA	NA	NA
AXJ83596.1|1568295_1568568_-	DNA-binding protein HU	NA	A7KV42	Bacillus_phage	73.3	4.2e-28
AXJ83597.1|1568738_1569737_-	Glycerol-3-phosphate dehydrogenase [NAD(P)+]	NA	NA	NA	NA	NA
AXJ83598.1|1569753_1571064_-	GTPase Der	NA	NA	NA	NA	NA
AXJ83599.1|1571285_1572461_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
AXJ83600.1|1573172_1573832_-	Cytidylate kinase	NA	NA	NA	NA	NA
AXJ83601.1|1573908_1574877_+	putative L-asparaginase	NA	NA	NA	NA	NA
AXJ83602.1|1574991_1575978_-	Glucosaminate ammonia-lyase	NA	NA	NA	NA	NA
AXJ83603.1|1576379_1577840_-	Elastin-binding protein EbpS	NA	NA	NA	NA	NA
AXJ83604.1|1577992_1579372_-	ATP-dependent DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	33.6	2.9e-56
AXJ83605.1|1579361_1580315_-	hypothetical protein	NA	NA	NA	NA	NA
AXJ83606.1|1580422_1580671_+	Ferredoxin	NA	A0A127AYY7	Bacillus_phage	48.0	8.3e-15
AXJ83607.1|1580776_1581322_-	Riboflavin transporter RibU	NA	NA	NA	NA	NA
AXJ83608.1|1581918_1582833_-	hypothetical protein	NA	NA	NA	NA	NA
AXJ83609.1|1582847_1583054_-	hypothetical protein	NA	NA	NA	NA	NA
AXJ83610.1|1583046_1583925_-	hypothetical protein	NA	NA	NA	NA	NA
AXJ83611.1|1584042_1584960_-	hypothetical protein	NA	NA	NA	NA	NA
AXJ83612.1|1585050_1585398_-	hypothetical protein	NA	Q4ZCJ7	Staphylococcus_virus	100.0	3.0e-26
AXJ83613.1|1585448_1586132_-	hypothetical protein	NA	A0A0A7S0U2	Clostridium_phage	28.3	1.1e-13
AXJ83614.1|1586128_1586452_-	hypothetical protein	NA	NA	NA	NA	NA
AXJ83615.1|1586408_1587458_-	hypothetical protein	NA	NA	NA	NA	NA
AXJ83616.1|1588076_1589531_-	putative cell wall hydrolase LytN precursor	NA	I1W626	Staphylococcus_phage	99.0	4.1e-287
AXJ83617.1|1589541_1589844_-|holin,lysis	Phage lysis protein, holin	holin,lysis	A0A2I6PF56	Staphylococcus_phage	100.0	3.1e-48
AXJ83618.1|1589979_1590279_-	hypothetical protein	NA	A0A2I6PER2	Staphylococcus_phage	100.0	2.0e-31
AXJ83619.1|1590324_1590489_-	hypothetical protein	NA	A0A2I6PES4	Staphylococcus_phage	100.0	4.9e-24
AXJ83620.1|1590481_1590871_-	hypothetical protein	NA	A0A2I6PER1	Staphylococcus_phage	100.0	2.2e-62
AXJ83621.1|1590870_1592337_-	hypothetical protein	NA	A0A2I6PDE3	Staphylococcus_phage	94.3	2.0e-257
AXJ83622.1|1592336_1594247_-	hypothetical protein	NA	A0A2I6PEQ9	Staphylococcus_phage	100.0	0.0e+00
AXJ83623.1|1594262_1594553_-	hypothetical protein	NA	U5U457	Staphylococcus_phage	100.0	2.1e-49
AXJ83624.1|1594552_1596136_-|tail	Prophage endopeptidase tail	tail	A0A2I6PEQ5	Staphylococcus_phage	100.0	9.3e-309
AXJ83625.1|1596144_1596969_-|tail	Phage tail protein	tail	A0A2I6PER3	Staphylococcus_phage	100.0	4.1e-159
AXJ83626.1|1596968_1603169_-	Glycyl-glycine endopeptidase ALE-1 precursor	NA	U5U762	Staphylococcus_phage	99.8	0.0e+00
AXJ83627.1|1603182_1603341_-	hypothetical protein	NA	A0A2I6PES8	Staphylococcus_phage	100.0	1.2e-19
AXJ83628.1|1603382_1603733_-	hypothetical protein	NA	A0A2I6PEQ2	Staphylococcus_phage	100.0	1.1e-55
AXJ83629.1|1603790_1604246_-	Bacterial Ig-like domain (group 2)	NA	A0A2I6PER6	Staphylococcus_phage	100.0	5.7e-78
AXJ83630.1|1604337_1604979_-|tail	Phage major tail protein	tail	A0A2I6PEP6	Staphylococcus_phage	100.0	5.9e-121
AXJ83631.1|1605013_1605409_-	hypothetical protein	NA	A0A2I6PDD8	Staphylococcus_phage	100.0	2.6e-66
AXJ83632.1|1605409_1605811_-	hypothetical protein	NA	A0A2I6PDD3	Staphylococcus_phage	100.0	6.2e-68
AXJ83633.1|1605807_1606140_-	hypothetical protein	NA	A0A2I6PDD6	Staphylococcus_phage	100.0	6.2e-58
AXJ83634.1|1606151_1606430_-|head,tail	Phage gp6-like head-tail connector protein	head,tail	A0A2I6PEQ1	Staphylococcus_phage	100.0	2.1e-46
AXJ83635.1|1606498_1607662_-|capsid	Phage capsid family protein	capsid	A0A2I6PDD7	Staphylococcus_phage	100.0	9.4e-218
AXJ83636.1|1607673_1608447_-|protease	ATP-dependent Clp protease proteolytic subunit 1	protease	M1TAZ4	Staphylococcus_phage	99.6	2.7e-136
AXJ83637.1|1608430_1609669_-|portal	Phage portal protein	portal	A0A2K9VBP0	Staphylococcus_phage	100.0	6.9e-235
AXJ83638.1|1609673_1611365_-	Phage Terminase	NA	A0A2I6PE44	Staphylococcus_phage	99.6	0.0e+00
AXJ83639.1|1611354_1611660_-|terminase	Phage terminase, small subunit	terminase	A0A2I6PE27	Staphylococcus_phage	100.0	2.9e-49
AXJ83640.1|1611788_1612103_-	HNH endonuclease	NA	Q4ZCU3	Staphylococcus_virus	100.0	2.5e-56
AXJ83641.1|1612259_1612697_-	hypothetical protein	NA	A0A2I6PEB8	Staphylococcus_phage	100.0	1.0e-76
AXJ83642.1|1612709_1614068_-	hypothetical protein	NA	A0A0K1LKG3	Staphylococcus_phage	98.7	1.2e-259
AXJ83643.1|1614057_1614348_-	VRR-NUC domain protein	NA	U5U7A3	Staphylococcus_phage	100.0	4.9e-51
AXJ83644.1|1614688_1617136_-	Virulence-associated protein E	NA	B5WZN5	Staphylococcus_phage	99.9	0.0e+00
AXJ83645.1|1617188_1617389_-	hypothetical protein	NA	A0A2I6PF41	Staphylococcus_phage	100.0	2.9e-26
AXJ83646.1|1617456_1617612_-	Transcriptional activator RinB	NA	B5WZN3	Staphylococcus_phage	100.0	1.2e-19
AXJ83647.1|1617601_1617838_-	hypothetical protein	NA	A7TWB3	Staphylococcus_phage	100.0	1.9e-37
AXJ83648.1|1617862_1618099_-	hypothetical protein	NA	C8CH06	Staphylococcus_phage	98.7	3.1e-35
AXJ83649.1|1618135_1618672_-	dUTPase	NA	S4V978	Staphylococcus_phage	98.9	1.0e-94
AXJ83650.1|1618664_1618847_-	hypothetical protein	NA	D2JGL7	Staphylococcus_phage	100.0	2.6e-26
AXJ83651.1|1618836_1619091_-	hypothetical protein	NA	W5R8J0	Staphylococcus_phage	100.0	5.0e-39
AXJ83652.1|1619102_1619345_-	hypothetical protein	NA	A0A2D1G5G2	Staphylococcus_phage	98.8	5.6e-40
AXJ83653.1|1619359_1619560_-	hypothetical protein	NA	A0A2I6PEM3	Staphylococcus_phage	100.0	2.5e-30
AXJ83654.1|1619562_1619820_-	hypothetical protein	NA	A0A2I6PEN5	Staphylococcus_phage	100.0	2.6e-43
AXJ83655.1|1619819_1620221_-	PVL ORF-50-like family protein	NA	A0A2I6PEL5	Staphylococcus_phage	99.2	2.3e-67
AXJ83656.1|1620220_1620406_-	hypothetical protein	NA	A0A2I6PEM8	Staphylococcus_phage	100.0	7.0e-27
AXJ83657.1|1620418_1622380_-	DNA polymerase I, thermostable	NA	A0A2I6PE86	Staphylococcus_phage	100.0	0.0e+00
AXJ83658.1|1622438_1622996_-	hypothetical protein	NA	A0A2K9VBT2	Staphylococcus_phage	100.0	1.8e-97
AXJ83659.1|1623021_1624188_-	PD-(D/E)XK nuclease superfamily protein	NA	A0A0K1LKE3	Staphylococcus_phage	99.7	1.6e-220
AXJ83660.1|1624184_1624547_-	hypothetical protein	NA	A0A2I6PF03	Staphylococcus_phage	99.2	2.4e-55
AXJ83661.1|1624561_1624885_-	hypothetical protein	NA	A0A2I6PF12	Staphylococcus_phage	100.0	5.9e-53
AXJ83662.1|1624963_1625125_-	hypothetical protein	NA	A7TWM3	Staphylococcus_phage	100.0	8.6e-21
AXJ83663.1|1625137_1625401_-	hypothetical protein	NA	A7TWG0	Staphylococcus_phage	100.0	5.7e-46
AXJ83664.1|1625425_1625641_-	hypothetical protein	NA	A0A2I6PF01	Staphylococcus_phage	97.2	2.7e-30
AXJ83665.1|1625695_1626061_+	hypothetical protein	NA	A0A2I6PF07	Staphylococcus_phage	100.0	2.4e-63
AXJ83666.1|1626029_1626275_-	hypothetical protein	NA	A0A2I6PF15	Staphylococcus_phage	100.0	5.1e-41
AXJ83667.1|1626324_1626543_-	hypothetical protein	NA	B5WZL5	Staphylococcus_phage	100.0	7.8e-33
AXJ83668.1|1626558_1627335_-	hypothetical protein	NA	M1RZB2	Staphylococcus_phage	100.0	1.5e-142
AXJ83669.1|1627360_1627588_-	hypothetical protein	NA	B5WZL3	Staphylococcus_phage	100.0	3.3e-34
AXJ83670.1|1627759_1628374_+	LexA repressor	NA	B5WZL2	Staphylococcus_phage	100.0	9.0e-111
AXJ83671.1|1628389_1629310_+	DNA polymerase III PolC-type	NA	B5WZL1	Staphylococcus_phage	100.0	2.5e-173
AXJ83672.1|1629406_1629589_+	hypothetical protein	NA	A0A2I6PDR4	Staphylococcus_phage	100.0	5.3e-27
AXJ83673.1|1629646_1629772_+	hypothetical protein	NA	Q4ZCR4	Staphylococcus_virus	97.6	1.6e-11
AXJ83674.1|1629768_1630383_-	hypothetical protein	NA	A0A2I6PEZ0	Staphylococcus_phage	99.5	2.5e-105
AXJ83675.1|1630508_1631714_+	Transposase	NA	A0A2I6PEN0	Staphylococcus_phage	100.0	7.7e-223
AXJ83676.1|1631756_1633784_-	hypothetical protein	NA	B5WZK7	Staphylococcus_phage	97.2	2.0e-114
AXJ83677.1|1633776_1634706_-	hypothetical protein	NA	NA	NA	NA	NA
AXJ83678.1|1634950_1636702_-	Sensor protein SrrB	NA	A0A1V0SGX0	Hokovirus	33.6	1.7e-21
AXJ83679.1|1636682_1637408_-	Transcriptional regulatory protein SrrA	NA	W8CYM9	Bacillus_phage	43.0	4.6e-45
>prophage 7
CP022908	Staphylococcus aureus strain 545 chromosome, complete genome	2935463	1693864	1702176	2935463	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
AXJ83742.1|1693864_1694650_-	High-affinity zinc uptake system ATP-binding protein ZnuC	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
AXJ83743.1|1694775_1695666_-	putative endonuclease 4	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
AXJ83744.1|1695675_1697022_-	DEAD-box ATP-dependent RNA helicase CshB	NA	A0A1V0SIR5	Klosneuvirus	33.7	5.3e-55
AXJ83745.1|1697135_1698236_-	Putative GTP cyclohydrolase 1 type 2	NA	A0A1S5V250	Saudi_moumouvirus	29.6	5.2e-08
AXJ83746.1|1698238_1698916_-|tRNA	tRNA (adenine(22)-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
AXJ83747.1|1699046_1700153_-	RNA polymerase sigma factor SigA	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
AXJ83748.1|1700376_1702176_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	4.6e-54
>prophage 8
CP022908	Staphylococcus aureus strain 545 chromosome, complete genome	2935463	1771235	1780278	2935463	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
AXJ83818.1|1771235_1771754_-	Adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
AXJ83819.1|1771775_1774049_-	Single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.8	1.2e-62
AXJ83820.1|1774251_1776531_-	bifunctional preprotein translocase subunit SecD/SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
AXJ83821.1|1776805_1777066_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
AXJ83822.1|1777084_1778224_-|tRNA	Queuine tRNA-ribosyltransferase	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
AXJ83823.1|1778246_1779272_-|tRNA	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
AXJ83824.1|1779273_1780278_-	Holliday junction ATP-dependent DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 9
CP022908	Staphylococcus aureus strain 545 chromosome, complete genome	2935463	1905949	1988651	2935463	protease,tRNA	Staphylococcus_phage(93.55%)	71	NA	NA
AXJ83927.1|1905949_1912510_-	Extracellular matrix-binding protein ebh precursor	NA	A0A2H4PQU6	Staphylococcus_phage	98.1	2.0e-304
AXJ83928.1|1912835_1913147_-	molybdopterin biosynthesis-like protein MoeZ	NA	A0A2H4PQR9	Staphylococcus_phage	100.0	1.6e-52
AXJ83929.1|1913168_1915586_-|tRNA	Leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.1	0.0e+00
AXJ83930.1|1915873_1917055_-	Multidrug resistance protein MdtH	NA	A0A2H4PQR6	Staphylococcus_phage	100.0	5.6e-218
AXJ83931.1|1917164_1918118_+	coproporphyrinogen III oxidase	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
AXJ83932.1|1918114_1918678_+	16S rRNA m(4)C1402 methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
AXJ83933.1|1918797_1919199_-	HTH-type transcriptional regulator rot	NA	NA	NA	NA	NA
AXJ83934.1|1920777_1921605_-	Phospholipase YtpA	NA	NA	NA	NA	NA
AXJ83935.1|1921838_1922840_+	Proline dehydrogenase 1	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
AXJ83936.1|1922961_1923426_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
AXJ83937.1|1923438_1924620_-	Riboflavin biosynthesis protein RibBA	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	6.6e-227
AXJ83938.1|1924630_1925263_-	Riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.5	1.7e-112
AXJ83939.1|1925269_1926301_-	Riboflavin biosynthesis protein RibD	NA	A0A2H4PQS8	Staphylococcus_phage	99.4	4.8e-197
AXJ83940.1|1926793_1928296_-	hypothetical protein	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
AXJ83941.1|1928818_1929133_+	Transcriptional repressor SdpR	NA	A0A2H4PQT4	Staphylococcus_phage	100.0	2.0e-53
AXJ83942.1|1929132_1930425_+	Arsenical pump membrane protein	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	5.0e-228
AXJ83943.1|1930442_1930838_+	Arsenate-mycothiol transferase ArsC2	NA	A0A2H4PQT9	Staphylococcus_phage	100.0	6.3e-73
AXJ83944.1|1931132_1931987_-	Bifunctional autolysin precursor	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
AXJ83945.1|1932262_1932487_-	hypothetical protein	NA	NA	NA	NA	NA
AXJ83946.1|1932685_1933156_+	RNA polymerase sigma factor SigS	NA	A0A2H4PQT5	Staphylococcus_phage	99.4	1.0e-82
AXJ83947.1|1933268_1933712_+	hypothetical protein	NA	NA	NA	NA	NA
AXJ83948.1|1933698_1934142_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	85.0	3.0e-55
AXJ83949.1|1934437_1935073_+|protease	CAAX amino terminal protease self- immunity	protease	NA	NA	NA	NA
AXJ83950.1|1935512_1936226_-	Transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
AXJ83951.1|1936485_1936788_+	hypothetical protein	NA	NA	NA	NA	NA
AXJ83952.1|1937043_1937409_+	Putative fluoride ion transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
AXJ83953.1|1937405_1937759_+	Putative fluoride ion transporter CrcB	NA	A0A2H4PQQ7	Staphylococcus_phage	99.1	1.0e-21
AXJ83954.1|1939841_1940675_-	Glyoxal reductase	NA	A0A2H4PQR8	Staphylococcus_phage	98.6	9.6e-156
AXJ83955.1|1940886_1941795_-	hypothetical protein	NA	A0A2H4PQQ8	Staphylococcus_phage	98.7	3.2e-136
AXJ83956.1|1941919_1943113_-	S-adenosylmethionine synthase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
AXJ83957.1|1943483_1945076_+	Phosphoenolpyruvate carboxykinase [ATP]	NA	A0A2H4PQN1	Staphylococcus_phage	99.8	0.0e+00
AXJ83958.1|1945211_1945697_-	Transposase IS200 like protein	NA	A0A1P8BMC0	Lactococcus_phage	35.4	4.9e-19
AXJ83959.1|1946008_1946731_-	Alpha/beta hydrolase family protein	NA	A0A2H4PQM6	Staphylococcus_phage	98.1	2.1e-122
AXJ83960.1|1946711_1947191_-	Putative 8-oxo-dGTP diphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.7	1.5e-84
AXJ83961.1|1947250_1947508_+	Putative membrane protein insertion efficiency factor	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
AXJ83962.1|1947504_1948506_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.6	4.8e-186
AXJ83963.1|1948510_1949989_-	2-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.0	2.0e-281
AXJ83964.1|1950147_1950630_-	hypothetical protein	NA	A0A2H4PQN7	Staphylococcus_phage	98.6	2.5e-79
AXJ83965.1|1950941_1951358_+	hypothetical protein	NA	A0A2H4PQM8	Staphylococcus_phage	90.4	5.2e-09
AXJ83966.1|1951636_1952632_+	Telomeric repeat-binding factor 2	NA	A0A2H4PQN2	Staphylococcus_phage	96.4	7.1e-73
AXJ83967.1|1952707_1953334_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	82.7	7.1e-79
AXJ83968.1|1953374_1953719_+	hypothetical protein	NA	A0A2H4PQN6	Staphylococcus_phage	92.0	6.3e-53
AXJ83969.1|1953816_1954368_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	94.1	1.0e-20
AXJ83970.1|1954585_1955227_-	hypothetical protein	NA	A0A2H4PQN8	Staphylococcus_phage	93.2	2.6e-76
AXJ83971.1|1955527_1955704_-	hypothetical protein	NA	NA	NA	NA	NA
AXJ83972.1|1955714_1956098_-	hypothetical protein	NA	NA	NA	NA	NA
AXJ83973.1|1956701_1956845_-	Transposase	NA	A0A2H4PQU1	Staphylococcus_phage	100.0	6.4e-20
AXJ83974.1|1957714_1958092_-	hypothetical protein	NA	NA	NA	NA	NA
AXJ83975.1|1958612_1959173_-	hypothetical protein	NA	A0A2H4PQT3	Staphylococcus_phage	100.0	9.5e-75
AXJ83976.1|1959489_1960662_-	Transposase, Mutator family	NA	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
AXJ83977.1|1964906_1966106_-	EcoKI restriction-modification system protein HsdS	NA	A0A2H4PQP5	Staphylococcus_phage	99.7	5.5e-229
AXJ83978.1|1966098_1967655_-	Type I restriction enzyme EcoKI M protein	NA	A0A2H4PQP4	Staphylococcus_phage	99.4	2.3e-288
AXJ83979.1|1968017_1968737_-|protease	Serine protease SplF precursor	protease	A0A2H4PQP1	Staphylococcus_phage	100.0	1.1e-131
AXJ83980.1|1968887_1969604_-|protease	Serine protease SplE precursor	protease	A0A2H4PQN5	Staphylococcus_phage	100.0	1.1e-131
AXJ83981.1|1969761_1970481_-|protease	Serine protease SplD precursor	protease	A0A2H4PQP9	Staphylococcus_phage	99.6	4.6e-130
AXJ83982.1|1970601_1971321_-|protease	Serine protease SplC precursor	protease	A0A2H4PQP7	Staphylococcus_phage	99.2	1.2e-130
AXJ83983.1|1971378_1972101_-|protease	Serine protease SplB precursor	protease	A0A2H4PQN0	Staphylococcus_phage	99.6	2.4e-131
AXJ83984.1|1972225_1972942_-|protease	Serine protease SplA precursor	protease	A0A2H4PQN3	Staphylococcus_phage	96.2	2.0e-125
AXJ83985.1|1973905_1974472_+	hypothetical protein	NA	A0A2H4PQH6	Staphylococcus_phage	100.0	3.3e-99
AXJ83986.1|1974945_1975644_-	hypothetical protein	NA	A0A2H4PQH0	Staphylococcus_phage	94.4	3.8e-113
AXJ83987.1|1975640_1976402_-	ABC-2 family transporter protein	NA	A0A2H4PQH2	Staphylococcus_phage	100.0	4.4e-131
AXJ83988.1|1976398_1977091_-	putative ABC transporter ATP-binding protein YxlF	NA	A0A2H4PQG7	Staphylococcus_phage	100.0	6.2e-124
AXJ83989.1|1977113_1978487_-	Thermophilic serine proteinase precursor	NA	A0A2H4PQH1	Staphylococcus_phage	100.0	2.9e-258
AXJ83990.1|1978496_1979015_-	Epidermin decarboxylase	NA	A0A2H4PQG9	Staphylococcus_phage	100.0	2.0e-95
AXJ83991.1|1979030_1980275_-	Nisin biosynthesis protein NisC	NA	A0A2H4PQH9	Staphylococcus_phage	99.8	2.6e-237
AXJ83992.1|1980267_1983261_-	hypothetical protein	NA	A0A2H4PQG8	Staphylococcus_phage	97.3	0.0e+00
AXJ83993.1|1983325_1983469_-	Lantibiotic gallidermin precursor	NA	A0A2H4PQH4	Staphylococcus_phage	80.9	5.3e-14
AXJ83994.1|1984590_1985574_-	Leucotoxin LukDv precursor	NA	A0A2H4PQH7	Staphylococcus_phage	98.8	6.8e-185
AXJ83995.1|1985575_1986511_-	Leucotoxin LukEv precursor	NA	A0A2H4PQI5	Staphylococcus_phage	100.0	1.4e-174
AXJ83996.1|1987394_1987850_+	hypothetical protein	NA	Q4ZCB9	Staphylococcus_virus	76.8	1.7e-61
AXJ83997.1|1987862_1988651_+	hypothetical protein	NA	A0A2H4PQI0	Staphylococcus_phage	95.8	5.3e-140
>prophage 10
CP022908	Staphylococcus aureus strain 545 chromosome, complete genome	2935463	2017174	2096277	2935463	portal,lysis,terminase,protease,head,tRNA,tail,capsid,holin	Staphylococcus_phage(86.76%)	89	NA	NA
AXJ84022.1|2017174_2017645_-|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	tRNA	NA	NA	NA	NA
AXJ84023.1|2017649_2018777_-	Epoxyqueuosine reductase	NA	NA	NA	NA	NA
AXJ84024.1|2018927_2019656_-	L-cystine import ATP-binding protein TcyC	NA	G9BWD6	Planktothrix_phage	42.7	1.0e-36
AXJ84025.1|2019642_2021100_-	Arginine transport system permease protein ArtQ	NA	NA	NA	NA	NA
AXJ84026.1|2021357_2022419_-	Phosphotransferase system, EIIC	NA	NA	NA	NA	NA
AXJ84027.1|2022911_2024231_+	Transposase	NA	A0A1S5SBP9	Streptococcus_phage	33.5	1.7e-50
AXJ84028.1|2032686_2033133_-	Peroxide-responsive repressor PerR	NA	NA	NA	NA	NA
AXJ84029.1|2033229_2034189_-	Glyoxylate/hydroxypyruvate reductase B	NA	NA	NA	NA	NA
AXJ84030.1|2034185_2034641_-	Putative peroxiredoxin bcp	NA	NA	NA	NA	NA
AXJ84031.1|2034721_2036011_+	Glutamate-1-semialdehyde 2,1-aminomutase 2	NA	NA	NA	NA	NA
AXJ84032.1|2036252_2037398_+	Fusaric acid resistance protein family protein	NA	NA	NA	NA	NA
AXJ84033.1|2037588_2039325_-	Putative multidrug export ATP-binding/permease protein	NA	W8CYL7	Bacillus_phage	30.4	1.7e-53
AXJ84034.1|2039615_2040158_-	hypothetical protein	NA	NA	NA	NA	NA
AXJ84035.1|2040459_2041497_-	putative A/G-specific adenine glycosylase YfhQ	NA	NA	NA	NA	NA
AXJ84036.1|2041648_2042626_+	hypothetical protein	NA	NA	NA	NA	NA
AXJ84037.1|2042886_2043723_-	hypothetical protein	NA	NA	NA	NA	NA
AXJ84038.1|2043731_2045249_-	Teichoic acids export ATP-binding protein TagH	NA	NA	NA	NA	NA
AXJ84039.1|2045263_2045578_-	hypothetical protein	NA	NA	NA	NA	NA
AXJ84040.1|2045555_2046374_-	Regulatory protein RecX	NA	NA	NA	NA	NA
AXJ84041.1|2046634_2047444_-	Monofunctional glycosyltransferase	NA	NA	NA	NA	NA
AXJ84042.1|2047784_2048300_-|protease	Putative cysteine protease YraA	protease	NA	NA	NA	NA
AXJ84043.1|2048430_2048592_-	hypothetical protein	NA	NA	NA	NA	NA
AXJ84044.1|2049064_2049748_-	hypothetical protein	NA	A0A0A7S0U2	Clostridium_phage	28.3	1.1e-13
AXJ84045.1|2049744_2050068_-	hypothetical protein	NA	NA	NA	NA	NA
AXJ84046.1|2050024_2051074_-	hypothetical protein	NA	NA	NA	NA	NA
AXJ84047.1|2051692_2053147_-	putative cell wall hydrolase LytN precursor	NA	I1W626	Staphylococcus_phage	99.0	4.1e-287
AXJ84048.1|2053157_2053460_-|holin,lysis	Phage lysis protein, holin	holin,lysis	A0A2I6PF56	Staphylococcus_phage	100.0	3.1e-48
AXJ84049.1|2053595_2053895_-	hypothetical protein	NA	A0A2I6PER2	Staphylococcus_phage	100.0	2.0e-31
AXJ84050.1|2053940_2054105_-	hypothetical protein	NA	A0A2I6PES4	Staphylococcus_phage	100.0	4.9e-24
AXJ84051.1|2054097_2054487_-	hypothetical protein	NA	A0A2I6PER1	Staphylococcus_phage	100.0	2.2e-62
AXJ84052.1|2054486_2055953_-	hypothetical protein	NA	A0A2I6PDE3	Staphylococcus_phage	94.3	2.0e-257
AXJ84053.1|2055952_2057863_-	hypothetical protein	NA	A0A2I6PEQ9	Staphylococcus_phage	100.0	0.0e+00
AXJ84054.1|2057878_2058169_-	hypothetical protein	NA	U5U457	Staphylococcus_phage	100.0	2.1e-49
AXJ84055.1|2058168_2059752_-|tail	Prophage endopeptidase tail	tail	A0A2I6PEQ5	Staphylococcus_phage	100.0	9.3e-309
AXJ84056.1|2059760_2060585_-|tail	Phage tail protein	tail	A0A2I6PER3	Staphylococcus_phage	100.0	4.1e-159
AXJ84057.1|2060584_2066785_-	Glycyl-glycine endopeptidase ALE-1 precursor	NA	U5U762	Staphylococcus_phage	99.8	0.0e+00
AXJ84058.1|2066798_2066957_-	hypothetical protein	NA	A0A2I6PES8	Staphylococcus_phage	100.0	1.2e-19
AXJ84059.1|2066998_2067349_-	hypothetical protein	NA	A0A2I6PEQ2	Staphylococcus_phage	100.0	1.1e-55
AXJ84060.1|2067406_2067862_-	Bacterial Ig-like domain (group 2)	NA	A0A2I6PER6	Staphylococcus_phage	100.0	5.7e-78
AXJ84061.1|2067953_2068595_-|tail	Phage major tail protein	tail	A0A2I6PEP6	Staphylococcus_phage	100.0	5.9e-121
AXJ84062.1|2068629_2069025_-	hypothetical protein	NA	A0A2I6PDD8	Staphylococcus_phage	100.0	2.6e-66
AXJ84063.1|2069025_2069427_-	hypothetical protein	NA	A0A2I6PDD3	Staphylococcus_phage	100.0	6.2e-68
AXJ84064.1|2069423_2069756_-	hypothetical protein	NA	A0A2I6PDD6	Staphylococcus_phage	100.0	6.2e-58
AXJ84065.1|2069767_2070046_-|head,tail	Phage gp6-like head-tail connector protein	head,tail	A0A2I6PEQ1	Staphylococcus_phage	100.0	2.1e-46
AXJ84066.1|2070114_2071278_-|capsid	Phage capsid family protein	capsid	A0A2I6PDD7	Staphylococcus_phage	100.0	9.4e-218
AXJ84067.1|2071289_2072063_-|protease	ATP-dependent Clp protease proteolytic subunit 1	protease	M1TAZ4	Staphylococcus_phage	99.6	2.7e-136
AXJ84068.1|2072046_2073285_-|portal	Phage portal protein	portal	A0A2K9VBP0	Staphylococcus_phage	100.0	6.9e-235
AXJ84069.1|2073289_2074981_-	Phage Terminase	NA	A0A2I6PE44	Staphylococcus_phage	99.6	0.0e+00
AXJ84070.1|2074970_2075276_-|terminase	Phage terminase, small subunit	terminase	A0A2I6PE27	Staphylococcus_phage	100.0	2.9e-49
AXJ84071.1|2075404_2075719_-	HNH endonuclease	NA	Q4ZCU3	Staphylococcus_virus	100.0	2.5e-56
AXJ84072.1|2075875_2076313_-	hypothetical protein	NA	A0A2I6PEB8	Staphylococcus_phage	100.0	1.0e-76
AXJ84073.1|2076325_2077684_-	hypothetical protein	NA	A0A0K1LKG3	Staphylococcus_phage	98.9	1.4e-260
AXJ84074.1|2077673_2077964_-	VRR-NUC domain protein	NA	U5U7A3	Staphylococcus_phage	100.0	4.9e-51
AXJ84075.1|2078304_2080752_-	Virulence-associated protein E	NA	B5WZN5	Staphylococcus_phage	99.9	0.0e+00
AXJ84076.1|2080804_2081005_-	hypothetical protein	NA	A0A2I6PF41	Staphylococcus_phage	100.0	2.9e-26
AXJ84077.1|2081072_2081228_-	Transcriptional activator RinB	NA	B5WZN3	Staphylococcus_phage	100.0	1.2e-19
AXJ84078.1|2081217_2081454_-	hypothetical protein	NA	A7TWB3	Staphylococcus_phage	100.0	1.9e-37
AXJ84079.1|2081478_2081715_-	hypothetical protein	NA	C8CH06	Staphylococcus_phage	98.7	3.1e-35
AXJ84080.1|2081751_2082288_-	dUTPase	NA	S4V978	Staphylococcus_phage	98.9	1.0e-94
AXJ84081.1|2082280_2082463_-	hypothetical protein	NA	D2JGL7	Staphylococcus_phage	100.0	2.6e-26
AXJ84082.1|2082452_2082707_-	hypothetical protein	NA	W5R8J0	Staphylococcus_phage	100.0	5.0e-39
AXJ84083.1|2082718_2082967_-	hypothetical protein	NA	A0A0K1LL46	Staphylococcus_phage	97.6	3.0e-41
AXJ84084.1|2082966_2083221_-	hypothetical protein	NA	A0A2I6PDN8	Staphylococcus_phage	96.4	1.8e-41
AXJ84085.1|2083220_2083580_-	PVL ORF-50-like family protein	NA	D2JGL0	Staphylococcus_phage	100.0	4.5e-62
AXJ84086.1|2083580_2083766_-	hypothetical protein	NA	D2JGK9	Staphylococcus_phage	100.0	7.0e-27
AXJ84087.1|2083765_2084173_-	Endodeoxyribonuclease RusA	NA	D2JGK8	Staphylococcus_phage	100.0	1.7e-73
AXJ84088.1|2084182_2084404_-	hypothetical protein	NA	Q4ZBL4	Staphylococcus_phage	100.0	1.7e-35
AXJ84089.1|2084416_2084575_-	hypothetical protein	NA	A0A0H3U301	Staphylococcus_phage	98.1	4.5e-22
AXJ84090.1|2084571_2085357_-	DNA replication protein DnaC	NA	A0A0H4J332	Staphylococcus_phage	99.6	4.2e-145
AXJ84091.1|2085369_2086125_-	hypothetical protein	NA	A0A1J0MGB2	Staphylococcus_phage	76.4	1.9e-78
AXJ84092.1|2086189_2086471_+	hypothetical protein	NA	A0A1W6JPU7	Staphylococcus_phage	100.0	2.6e-49
AXJ84093.1|2086463_2086613_-	hypothetical protein	NA	A7TWN0	Staphylococcus_phage	100.0	2.4e-17
AXJ84094.1|2086609_2087284_-	hypothetical protein	NA	A1KX69	Staphylococcus_virus	99.6	1.5e-130
AXJ84095.1|2087295_2087739_-	Single-stranded DNA-binding protein ssb	NA	A0A2I6PD99	Staphylococcus_phage	95.9	3.2e-73
AXJ84096.1|2087735_2088386_-	ERF superfamily protein	NA	A0A0F6N3I5	Staphylococcus_phage	100.0	1.1e-119
AXJ84097.1|2088386_2088923_-	Bacteriophage Mu Gam like protein	NA	A0A2I6PD93	Staphylococcus_phage	100.0	1.7e-81
AXJ84098.1|2088935_2089196_-	hypothetical protein	NA	A0A059T5A3	Staphylococcus_phage	100.0	1.2e-43
AXJ84099.1|2089441_2089663_-	hypothetical protein	NA	A0A1X9H0Q4	Staphylococcus_phage	98.6	3.3e-31
AXJ84100.1|2089733_2090387_+	hypothetical protein	NA	Q4ZBF5	Staphylococcus_virus	99.5	1.3e-115
AXJ84101.1|2090396_2090540_-	hypothetical protein	NA	A0A0H4ITW0	Staphylococcus_phage	97.9	5.6e-16
AXJ84102.1|2090555_2091308_-	Phage antirepressor protein KilAC domain protein	NA	A0A0E3T9K5	Staphylococcus_phage	99.2	4.8e-138
AXJ84103.1|2091309_2091495_-	helix-turn-helix protein	NA	A0A0H4IP57	Staphylococcus_phage	100.0	1.3e-25
AXJ84104.1|2091940_2092423_+	hypothetical protein	NA	A0A0N9BAX2	Staphylococcus_phage	100.0	1.1e-82
AXJ84105.1|2092523_2092703_-	hypothetical protein	NA	A0A0H3U490	Staphylococcus_phage	98.3	2.2e-25
AXJ84106.1|2092717_2093161_-	hypothetical protein	NA	Q6R853	Staphylococcus_virus	99.3	5.8e-75
AXJ84107.1|2093208_2093421_-	helix-turn-helix protein	NA	A7TWF1	Staphylococcus_phage	100.0	1.6e-30
AXJ84108.1|2093572_2094304_+	LexA repressor	NA	S4SVC5	Staphylococcus_phage	100.0	6.9e-134
AXJ84109.1|2094339_2095020_+	PemK-like protein	NA	A0A2H4PQQ5	Staphylococcus_phage	100.0	5.1e-123
AXJ84110.1|2095230_2096277_+	Tyrosine recombinase XerC	NA	Q4ZE08	Staphylococcus_virus	100.0	4.2e-201
>prophage 11
CP022908	Staphylococcus aureus strain 545 chromosome, complete genome	2935463	2850205	2867730	2935463		Streptococcus_phage(100.0%)	16	NA	NA
AXJ84795.1|2850205_2851423_-	Transposase	NA	A0A1S5SEW7	Streptococcus_phage	100.0	3.7e-233
AXJ84796.1|2851504_2851708_-	Excisionase	NA	A0A1S5SF07	Streptococcus_phage	100.0	4.0e-31
AXJ84797.1|2852168_2852399_-	Helix-turn-helix domain protein	NA	A0A1S5SEX1	Streptococcus_phage	100.0	2.7e-36
AXJ84798.1|2852395_2852818_-	RNA polymerase sigma factor	NA	A0A1S5SEW0	Streptococcus_phage	100.0	2.5e-72
AXJ84799.1|2853322_2853676_+	anaerobic benzoate catabolism transcriptional regulator	NA	A0A1S5SFA6	Streptococcus_phage	99.1	3.0e-58
AXJ84800.1|2854021_2855941_-	Tetracycline resistance protein TetM from transposon TnFO1	NA	A0A1S5SF82	Streptococcus_phage	99.4	0.0e+00
AXJ84801.1|2856317_2857253_-	Conjugative transposon protein TcpC	NA	A0A1S5SF22	Streptococcus_phage	99.4	5.9e-170
AXJ84802.1|2857249_2858206_-	putative endopeptidase p60 precursor	NA	A0A1S5SEZ8	Streptococcus_phage	100.0	2.8e-183
AXJ84803.1|2858159_2860424_-	hypothetical protein	NA	A0A1S5SF30	Streptococcus_phage	94.3	0.0e+00
AXJ84804.1|2860426_2862874_-	AAA-like domain protein	NA	A0A1S5SF64	Streptococcus_phage	100.0	0.0e+00
AXJ84805.1|2863338_2863836_-	Antirestriction protein (ArdA)	NA	A0A1S5SF25	Streptococcus_phage	100.0	1.7e-91
AXJ84806.1|2863952_2864174_-	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	100.0	4.3e-31
AXJ84807.1|2864216_2865422_-	Replication initiation factor	NA	A0A1S5SEX3	Streptococcus_phage	100.0	2.8e-233
AXJ84808.1|2865599_2866985_-	DNA translocase FtsK	NA	A0A1S5SFB5	Streptococcus_phage	100.0	1.1e-265
AXJ84809.1|2867013_2867397_-	hypothetical protein	NA	A0A1S5SF96	Streptococcus_phage	100.0	2.3e-64
AXJ84810.1|2867415_2867730_-	hypothetical protein	NA	A0A1S5SF38	Streptococcus_phage	100.0	5.2e-54
