The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP022894	Staphylococcus aureus strain 191 chromosome, complete genome	2911744	398473	415727	2911744		Staphylococcus_phage(76.19%)	27	NA	NA
AXJ37462.1|398473_398665_-	hypothetical protein	NA	U3PCX8	Staphylococcus_phage	80.0	1.1e-22
AXJ37463.1|398908_399205_+	30S ribosomal protein S6	NA	NA	NA	NA	NA
AXJ37464.1|399225_399729_+	Single-stranded DNA-binding protein ssb	NA	A0A1W6JPL9	Staphylococcus_phage	74.7	1.2e-60
AXJ37465.1|399780_400023_+	30S ribosomal protein S18	NA	NA	NA	NA	NA
AXJ37466.1|400254_400974_-	PemK-like protein	NA	Q4ZE81	Staphylococcus_phage	29.8	3.7e-23
AXJ37467.1|401086_402301_-	Tyrosine recombinase XerD	NA	Q4ZE80	Staphylococcus_phage	97.3	3.3e-221
AXJ37468.1|402461_403085_-	Helix-turn-helix domain protein	NA	NA	NA	NA	NA
AXJ37469.1|403233_403398_+	Helix-turn-helix domain protein	NA	NA	NA	NA	NA
AXJ37470.1|403398_403671_+	hypothetical protein	NA	Q4ZE77	Staphylococcus_phage	97.8	5.0e-45
AXJ37471.1|403682_403856_+	hypothetical protein	NA	NA	NA	NA	NA
AXJ37472.1|403822_404026_+	hypothetical protein	NA	A0A1W6JQF4	Staphylococcus_phage	98.5	2.0e-30
AXJ37473.1|404027_404411_+	hypothetical protein	NA	A0A1W6JQI7	Staphylococcus_phage	96.1	4.8e-62
AXJ37474.1|404411_404738_+	hypothetical protein	NA	Q4ZE75	Staphylococcus_phage	96.3	3.5e-53
AXJ37475.1|404802_405672_+	hypothetical protein	NA	A0A2H4JEH3	uncultured_Caudovirales_phage	76.1	1.0e-131
AXJ37476.1|405683_407054_+	hypothetical protein	NA	A0A2H4JBE3	uncultured_Caudovirales_phage	95.0	2.4e-257
AXJ37477.1|407296_407653_+	hypothetical protein	NA	A0A2H4JBD4	uncultured_Caudovirales_phage	78.8	3.0e-50
AXJ37478.1|407654_407918_+	hypothetical protein	NA	NA	NA	NA	NA
AXJ37479.1|407919_408561_+	hypothetical protein	NA	Q4ZE67	Staphylococcus_phage	93.4	2.5e-111
AXJ37480.1|409268_409613_+	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	91.7	1.3e-50
AXJ37481.1|409643_410297_+	hypothetical protein	NA	Q4ZE82	Staphylococcus_phage	99.5	7.6e-116
AXJ37482.1|410349_410877_+	hypothetical protein	NA	Q4ZE87	Staphylococcus_phage	99.4	2.0e-90
AXJ37483.1|410879_411221_+	hypothetical protein	NA	Q4ZE86	Staphylococcus_phage	98.2	1.1e-57
AXJ37484.1|411217_411787_+	Terminase small subunit	NA	Q4ZE85	Staphylococcus_phage	98.4	4.6e-101
AXJ37485.1|412063_413032_+	Abi-like protein	NA	A0A0H4U080	Erysipelothrix_phage	27.3	2.7e-24
AXJ37486.1|413209_413611_+	hypothetical protein	NA	A0A2H4J577	uncultured_Caudovirales_phage	59.1	5.1e-22
AXJ37487.1|413728_414241_+	hypothetical protein	NA	Q4ZE83	Staphylococcus_phage	100.0	1.4e-69
AXJ37488.1|414554_415727_+	Transposase, Mutator family	NA	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
>prophage 2
CP022894	Staphylococcus aureus strain 191 chromosome, complete genome	2911744	765503	773324	2911744		Hokovirus(16.67%)	10	NA	NA
AXJ37800.1|765503_766559_-	Histidine protein kinase SaeS	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
AXJ37801.1|766558_767245_-	Response regulator SaeR	NA	NA	NA	NA	NA
AXJ37802.1|767219_767693_-	DoxX	NA	NA	NA	NA	NA
AXJ37803.1|768035_768476_-	Electron transfer DM13	NA	NA	NA	NA	NA
AXJ37804.1|768755_769340_-	hypothetical protein	NA	NA	NA	NA	NA
AXJ37805.1|769438_770152_-	7-carboxy-7-deazaguanine synthase	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
AXJ37806.1|770155_770575_-	6-carboxy-5,6,7,8-tetrahydropterin synthase	NA	S4U060	uncultured_phage	28.7	6.3e-07
AXJ37807.1|770576_771245_-	7-cyano-7-deazaguanine synthase	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
AXJ37808.1|771595_772189_+	Anthranilate synthase component 2	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
AXJ37809.1|772172_773324_+	Aminodeoxychorismate synthase component 1	NA	S4VNU7	Pandoravirus	35.7	6.0e-23
>prophage 3
CP022894	Staphylococcus aureus strain 191 chromosome, complete genome	2911744	788113	801776	2911744		uncultured_Caudovirales_phage(50.0%)	11	NA	NA
AXJ37820.1|788113_789031_-	Putative lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	2.1e-07
AXJ37821.1|789409_791014_+	Transposase DDE domain protein	NA	A0ZS58	Staphylococcus_virus	44.4	1.1e-128
AXJ37822.1|791140_792646_-	Di-/tripeptide transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
AXJ37823.1|792986_793487_-	NADPH-dependent 7-cyano-7-deazaguanine reductase	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
AXJ37824.1|793506_794373_-	EamA-like transporter family protein	NA	NA	NA	NA	NA
AXJ37825.1|795173_795572_+	ribonucleotide reductase stimulatory protein	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
AXJ37826.1|795534_797640_+	Ribonucleoside-diphosphate reductase subunit alpha 2	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
AXJ37827.1|797757_798729_+	Ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
AXJ37828.1|799061_800075_+	Fe(3+) dicitrate transport system permease protein FecD	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.0	2.2e-138
AXJ37829.1|800061_801018_+	Iron-uptake system permease protein FeuC	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
AXJ37830.1|801014_801776_+	putative siderophore transport system ATP-binding protein YusV	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	6.5e-18
>prophage 4
CP022894	Staphylococcus aureus strain 191 chromosome, complete genome	2911744	852628	869590	2911744	integrase	Staphylococcus_phage(81.25%)	25	854000:854015	861398:861413
AXJ37875.1|852628_855001_+	Ribonuclease R	NA	Q0GXV6	Lactococcus_phage	38.8	4.3e-92
854000:854015	attL	GCAAATGAAACAGTTG	NA	NA	NA	NA
AXJ37876.1|855022_855487_+	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	98.7	1.6e-80
AXJ37877.1|856049_857156_-|integrase	Putative prophage phiRv2 integrase	integrase	H0UST3	Bacillus_phage	44.2	5.9e-76
AXJ37878.1|857161_857746_-	hypothetical protein	NA	NA	NA	NA	NA
AXJ37879.1|857966_858173_+	hypothetical protein	NA	NA	NA	NA	NA
AXJ37880.1|858208_858436_+	helix-turn-helix protein	NA	NA	NA	NA	NA
AXJ37881.1|858432_858606_+	hypothetical protein	NA	NA	NA	NA	NA
AXJ37882.1|858572_858776_+	hypothetical protein	NA	A0A1W6JQF4	Staphylococcus_phage	98.5	2.0e-30
AXJ37883.1|858777_859161_+	hypothetical protein	NA	A0A1W6JQI7	Staphylococcus_phage	96.9	3.3e-63
AXJ37884.1|859161_859485_+	hypothetical protein	NA	A0A1W6JQH0	Staphylococcus_phage	93.3	2.6e-40
AXJ37885.1|859529_861146_+	hypothetical protein	NA	A0A1W6JPF4	Staphylococcus_phage	78.1	3.0e-246
AXJ37886.1|861321_862125_+	hypothetical protein	NA	Q4ZE69	Staphylococcus_phage	97.0	3.1e-151
861398:861413	attR	CAACTGTTTCATTTGC	NA	NA	NA	NA
AXJ37887.1|862111_862384_+	hypothetical protein	NA	Q4ZE68	Staphylococcus_phage	100.0	3.2e-44
AXJ37888.1|862385_863027_+	hypothetical protein	NA	Q4ZE67	Staphylococcus_phage	92.5	2.1e-110
AXJ37889.1|863476_863818_+	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	98.2	4.2e-57
AXJ37890.1|863829_864408_+	hypothetical protein	NA	A0A2H4JBG0	uncultured_Caudovirales_phage	38.9	4.8e-29
AXJ37891.1|864425_864644_+	hypothetical protein	NA	NA	NA	NA	NA
AXJ37892.1|864694_865222_+	hypothetical protein	NA	A0A1W6JQH7	Staphylococcus_phage	96.6	1.7e-86
AXJ37893.1|865224_865566_+	hypothetical protein	NA	A0A1W6JQM3	Staphylococcus_phage	100.0	1.7e-58
AXJ37894.1|865562_866132_+	Terminase small subunit	NA	Q4ZE85	Staphylococcus_phage	98.4	3.5e-101
AXJ37895.1|866346_866919_+	hypothetical protein	NA	NA	NA	NA	NA
AXJ37896.1|866939_867236_+	hypothetical protein	NA	NA	NA	NA	NA
AXJ37897.1|867235_867676_+	preprotein translocase subunit SecB	NA	NA	NA	NA	NA
AXJ37898.1|867981_868332_+	hypothetical protein	NA	NA	NA	NA	NA
AXJ37899.1|868417_869590_+	Transposase, Mutator family	NA	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
>prophage 5
CP022894	Staphylococcus aureus strain 191 chromosome, complete genome	2911744	986102	1033492	2911744	holin,portal,tail,protease,capsid	Staphylococcus_phage(98.51%)	67	NA	NA
AXJ38008.1|986102_987275_+	Transposase, Mutator family	NA	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
AXJ38009.1|987531_988587_+	putative leukocidin-like protein 2 precursor	NA	A0A1X9IGW5	Staphylococcus_phage	34.3	2.8e-35
AXJ38010.1|988608_989625_+	putative leukocidin-like protein 1 precursor	NA	A0A1X9IGW5	Staphylococcus_phage	30.2	6.7e-26
AXJ38011.1|989862_990687_-	Phospholipase C precursor	NA	A0A1P8L6H7	Staphylococcus_phage	100.0	6.8e-162
AXJ38012.1|990743_991781_-	Tyrosine recombinase XerC	NA	A0A1X9H022	Staphylococcus_phage	100.0	2.6e-179
AXJ38013.1|991974_992679_-	PemK-like protein	NA	U5U4R0	Staphylococcus_phage	100.0	4.6e-127
AXJ38014.1|992818_992986_-	hypothetical protein	NA	U5U774	Staphylococcus_phage	100.0	1.7e-24
AXJ38015.1|993055_993241_-	hypothetical protein	NA	U5U7D6	Staphylococcus_phage	100.0	2.3e-25
AXJ38016.1|993237_993384_-	hypothetical protein	NA	A0A1X9H032	Staphylococcus_phage	100.0	3.3e-19
AXJ38017.1|993457_994312_-	HIRAN domain protein	NA	A0A1X9H037	Staphylococcus_phage	100.0	7.3e-151
AXJ38018.1|994323_995040_-	putative HTH-type transcriptional regulator	NA	A0A1X9H038	Staphylococcus_phage	100.0	5.4e-131
AXJ38019.1|995203_995446_+	hypothetical protein	NA	A0A1X9H035	Staphylococcus_phage	100.0	1.6e-39
AXJ38020.1|995458_995905_+	hypothetical protein	NA	A0A1W6JPI3	Staphylococcus_phage	100.0	1.9e-78
AXJ38021.1|995919_996060_+	hypothetical protein	NA	A0A2I6PDT8	Staphylococcus_phage	100.0	1.9e-16
AXJ38022.1|996052_996262_-	hypothetical protein	NA	A0A2I6PDR8	Staphylococcus_phage	100.0	9.1e-31
AXJ38023.1|996318_997068_+	Phage antirepressor protein KilAC domain protein	NA	A0A1W6JPN2	Staphylococcus_phage	99.6	2.0e-136
AXJ38024.1|997083_997281_+	hypothetical protein	NA	O80075	Staphylococcus_phage	100.0	2.5e-30
AXJ38025.1|997267_997648_-	hypothetical protein	NA	Q9T1Z5	Staphylococcus_phage	100.0	1.2e-68
AXJ38026.1|997702_998026_+	hypothetical protein	NA	A0A075LYF5	Staphylococcus_phage	100.0	3.0e-57
AXJ38027.1|998022_998184_+	hypothetical protein	NA	A0A1P8L6G0	Staphylococcus_phage	100.0	1.9e-20
AXJ38028.1|998278_998581_+	hypothetical protein	NA	A0A1P8L6F8	Staphylococcus_phage	100.0	7.0e-48
AXJ38029.1|998585_998846_+	hypothetical protein	NA	A0A1P8L6F5	Staphylococcus_phage	100.0	5.2e-44
AXJ38030.1|998854_999118_+	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
AXJ38031.1|999126_1001070_+	hypothetical protein	NA	S4V9K6	Staphylococcus_phage	100.0	0.0e+00
AXJ38032.1|1001071_1001992_+	recombination and repair protein RecT	NA	A0A2I6PDH5	Staphylococcus_phage	99.7	8.6e-166
AXJ38033.1|1002204_1002690_+	Beta-lactamase superfamily domain protein	NA	S4SWA4	Staphylococcus_phage	99.4	1.2e-86
AXJ38034.1|1002690_1003161_+	Single-stranded DNA-binding protein ssb	NA	A0A1P8L6D9	Staphylococcus_phage	100.0	5.7e-81
AXJ38035.1|1003190_1004084_+	Replication initiation and membrane attachment	NA	A0A1P8L6F0	Staphylococcus_phage	100.0	3.2e-141
AXJ38036.1|1004090_1004309_+	hypothetical protein	NA	A0A1P8L6E4	Staphylococcus_phage	100.0	1.4e-37
AXJ38037.1|1004317_1004722_+	Endodeoxyribonuclease RusA	NA	A0A075M042	Staphylococcus_phage	99.3	9.3e-72
AXJ38038.1|1004734_1005106_+	PVL ORF-50-like family protein	NA	A0A2I6PDG3	Staphylococcus_phage	91.1	1.4e-50
AXJ38039.1|1005105_1005363_+	hypothetical protein	NA	A0A1X9H067	Staphylococcus_phage	98.8	6.3e-42
AXJ38040.1|1005365_1005608_+	hypothetical protein	NA	A0A2H4PQJ3	Staphylococcus_phage	98.8	1.2e-39
AXJ38041.1|1005619_1005868_+	hypothetical protein	NA	Q8SDV5	Staphylococcus_phage	95.1	4.5e-37
AXJ38042.1|1005864_1006401_+	dUTPase	NA	Q9MBR0	Staphylococcus_prophage	100.0	1.6e-95
AXJ38043.1|1006437_1006683_+	hypothetical protein	NA	A0A2I6PDW7	Staphylococcus_phage	97.5	4.2e-35
AXJ38044.1|1006679_1006886_+	hypothetical protein	NA	A0A2I6PEA2	Staphylococcus_phage	94.1	1.1e-17
AXJ38045.1|1006882_1007032_+	Transcriptional activator RinB	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
AXJ38046.1|1007031_1007232_+	hypothetical protein	NA	D2JLD9	Staphylococcus_phage	98.5	5.3e-28
AXJ38047.1|1007259_1007676_+	hypothetical protein	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
AXJ38048.1|1007907_1008207_+	HNH endonuclease	NA	A0EWY8	Staphylococcus_phage	100.0	4.6e-52
AXJ38049.1|1008337_1008682_+	hypothetical protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
AXJ38050.1|1008678_1010340_+	Phage Terminase	NA	Q8LTH3	Staphylococcus_phage	100.0	0.0e+00
AXJ38051.1|1010355_1011519_+|portal	Phage portal protein	portal	A0A1W6JPQ9	Staphylococcus_phage	100.0	1.8e-216
AXJ38052.1|1011502_1012240_+|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A1W6JPK0	Staphylococcus_phage	100.0	1.8e-129
AXJ38053.1|1012187_1013408_+|capsid	Phage capsid family protein	capsid	A0A075LYD8	Staphylococcus_phage	99.5	8.6e-230
AXJ38054.1|1013427_1013688_+	hypothetical protein	NA	A0A0H3U504	Staphylococcus_phage	100.0	6.4e-42
AXJ38055.1|1013688_1013985_+	hypothetical protein	NA	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.6e-47
AXJ38056.1|1013968_1014331_+	hypothetical protein	NA	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
AXJ38057.1|1014327_1014732_+	hypothetical protein	NA	A0A1W6JPJ1	Staphylococcus_phage	100.0	2.5e-69
AXJ38058.1|1014728_1015136_+	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	100.0	7.1e-72
AXJ38059.1|1015136_1015778_+	hypothetical protein	NA	A0A1W6JPP5	Staphylococcus_phage	100.0	1.1e-119
AXJ38060.1|1016094_1016445_+	hypothetical protein	NA	G4KNQ8	Staphylococcus_phage	100.0	7.8e-59
AXJ38061.1|1016495_1016633_+	hypothetical protein	NA	A0A2I6PDX7	Staphylococcus_phage	100.0	3.4e-18
AXJ38062.1|1016689_1021201_+	Murein DD-endopeptidase MepM	NA	A0EX03	Staphylococcus_phage	88.0	0.0e+00
AXJ38063.1|1021197_1022682_+|tail	Phage tail protein	tail	A0A068A242	Staphylococcus_phage	98.8	4.6e-294
AXJ38064.1|1022697_1026483_+	hypothetical protein	NA	A0A1P8L6B8	Staphylococcus_phage	99.8	0.0e+00
AXJ38065.1|1026472_1026625_+	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
AXJ38066.1|1026671_1026959_+	hypothetical protein	NA	D2JLG1	Staphylococcus_phage	100.0	1.3e-43
AXJ38067.1|1027082_1027313_+	hypothetical protein	NA	D2JLG2	Staphylococcus_phage	100.0	1.2e-31
AXJ38068.1|1027850_1028105_+|holin	Bacteriophage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
AXJ38069.1|1028116_1028872_+	putative cell wall hydrolase LytN precursor	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
AXJ38070.1|1029062_1029554_+	Staphylokinase precursor	NA	A0A1X9H028	Staphylococcus_phage	100.0	9.5e-87
AXJ38071.1|1030242_1030539_+	Bacterial SH3 domain protein	NA	A0A1P8L6B4	Staphylococcus_phage	100.0	1.3e-51
AXJ38072.1|1030633_1031083_-	Chemotaxis inhibitory protein precursor	NA	A0A1P8L6A8	Staphylococcus_phage	100.0	1.1e-78
AXJ38073.1|1031766_1032117_+	Complement inhibitor precursor	NA	A0A1P8L6B0	Staphylococcus_phage	100.0	7.5e-54
AXJ38074.1|1033291_1033492_-	Phospholipase C precursor	NA	A0A1P8L6A7	Staphylococcus_phage	100.0	3.4e-27
>prophage 6
CP022894	Staphylococcus aureus strain 191 chromosome, complete genome	2911744	1166653	1232347	2911744	tRNA,protease	Staphylococcus_phage(94.12%)	60	NA	NA
AXJ38192.1|1166653_1167442_-	hypothetical protein	NA	A0A2H4PQI0	Staphylococcus_phage	98.5	3.6e-144
AXJ38193.1|1167811_1167910_-	hypothetical protein	NA	A0A2H4PQI6	Staphylococcus_phage	100.0	1.4e-10
AXJ38194.1|1168805_1169741_+	Leucotoxin LukEv precursor	NA	A0A2H4PQI5	Staphylococcus_phage	100.0	1.4e-174
AXJ38195.1|1169742_1170726_+	Leucotoxin LukDv precursor	NA	A0A2H4PQH7	Staphylococcus_phage	99.4	1.8e-185
AXJ38196.1|1171095_1171887_-	hypothetical protein	NA	NA	NA	NA	NA
AXJ38197.1|1171891_1172365_-	hypothetical protein	NA	NA	NA	NA	NA
AXJ38198.1|1172620_1172839_+	hypothetical protein	NA	A0A2H4PQH0	Staphylococcus_phage	80.6	2.0e-25
AXJ38199.1|1173311_1173893_-	hypothetical protein	NA	A0A2H4PQH6	Staphylococcus_phage	64.8	9.6e-54
AXJ38200.1|1174042_1175215_+	Transposase, Mutator family	NA	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
AXJ38201.1|1176188_1176896_+|protease	Serine protease SplA precursor	protease	A0A2H4PQN3	Staphylococcus_phage	96.6	5.1e-126
AXJ38202.1|1177020_1177743_+|protease	Serine protease SplB precursor	protease	A0A2H4PQN0	Staphylococcus_phage	98.3	3.5e-130
AXJ38203.1|1177800_1178520_+|protease	Serine protease SplC precursor	protease	A0A2H4PQP7	Staphylococcus_phage	98.3	8.6e-129
AXJ38204.1|1178640_1179360_+|protease	Serine protease SplD precursor	protease	A0A2H4PQP9	Staphylococcus_phage	99.6	4.6e-130
AXJ38205.1|1179517_1180237_+|protease	Serine protease SplF precursor	protease	A0A2H4PQP1	Staphylococcus_phage	99.6	1.9e-131
AXJ38206.1|1180597_1182154_+	putative type I restriction enzymeP M protein	NA	A0A2H4PQP4	Staphylococcus_phage	100.0	1.6e-289
AXJ38207.1|1182146_1183376_+	EcoKI restriction-modification system protein HsdS	NA	A0A2H4PQP5	Staphylococcus_phage	64.7	4.0e-134
AXJ38208.1|1183827_1184328_+	hypothetical protein	NA	NA	NA	NA	NA
AXJ38209.1|1184915_1185008_+	hypothetical protein	NA	A0A2H4PQU1	Staphylococcus_phage	87.5	3.7e-05
AXJ38210.1|1185358_1185928_+	Integrase core domain protein	NA	A0A2I7SC85	Paenibacillus_phage	56.8	1.3e-55
AXJ38211.1|1186125_1186698_-	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	93.1	2.3e-23
AXJ38212.1|1186798_1187140_-	hypothetical protein	NA	A0A2H4PQN6	Staphylococcus_phage	94.7	1.1e-54
AXJ38213.1|1187180_1187807_-	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	79.8	3.1e-74
AXJ38214.1|1187881_1188877_-	Telomeric repeat-binding factor 2	NA	A0A2H4PQN2	Staphylococcus_phage	97.9	2.6e-67
AXJ38215.1|1188957_1189572_-	SPBc2 prophage-derived endonuclease YokF precursor	NA	A0A2H4PQM8	Staphylococcus_phage	93.1	1.1e-42
AXJ38216.1|1189883_1190366_+	hypothetical protein	NA	A0A2H4PQN7	Staphylococcus_phage	99.3	3.8e-80
AXJ38217.1|1190524_1192003_+	2-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.6	2.8e-283
AXJ38218.1|1192007_1193009_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.3	5.3e-185
AXJ38219.1|1193005_1193263_-	Putative membrane protein insertion efficiency factor	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
AXJ38220.1|1193322_1193802_+	Putative 8-oxo-dGTP diphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	99.4	3.0e-85
AXJ38221.1|1193782_1194553_+	Prolyl oligopeptidase family protein	NA	A0A2H4PQM6	Staphylococcus_phage	98.8	1.5e-142
AXJ38222.1|1194930_1196523_-	Phosphoenolpyruvate carboxykinase [ATP]	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
AXJ38223.1|1196894_1198091_+	S-adenosylmethionine synthase	NA	A0A2H4PQS6	Staphylococcus_phage	99.5	4.3e-218
AXJ38224.1|1198212_1199121_+	hypothetical protein	NA	A0A2H4PQQ8	Staphylococcus_phage	100.0	3.4e-138
AXJ38225.1|1199332_1200166_+	Glyoxal reductase	NA	A0A2H4PQR8	Staphylococcus_phage	99.3	7.8e-158
AXJ38226.1|1202162_1202516_-	Putative fluoride ion transporter CrcB	NA	A0A2H4PQQ7	Staphylococcus_phage	88.0	6.5e-13
AXJ38227.1|1202512_1202878_-	Putative fluoride ion transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
AXJ38228.1|1203133_1203436_-	hypothetical protein	NA	NA	NA	NA	NA
AXJ38229.1|1203695_1204409_+	Transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
AXJ38230.1|1204848_1205484_-|protease	CAAX amino terminal protease self- immunity	protease	NA	NA	NA	NA
AXJ38231.1|1205779_1206223_+	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	98.6	2.4e-57
AXJ38232.1|1206209_1206653_-	hypothetical protein	NA	NA	NA	NA	NA
AXJ38233.1|1206765_1207236_-	RNA polymerase sigma factor SigS	NA	A0A2H4PQT5	Staphylococcus_phage	98.1	8.8e-82
AXJ38234.1|1207434_1207659_+	hypothetical protein	NA	NA	NA	NA	NA
AXJ38235.1|1207934_1208789_+	Bifunctional autolysin precursor	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
AXJ38236.1|1208875_1210168_-	Arsenical pump membrane protein	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	5.0e-228
AXJ38237.1|1210167_1210482_-	Transcriptional repressor SdpR	NA	A0A2H4PQT4	Staphylococcus_phage	98.1	9.8e-53
AXJ38238.1|1211004_1212507_+	hypothetical protein	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	1.9e-29
AXJ38239.1|1212987_1214031_+	Riboflavin biosynthesis protein RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.8	5.3e-196
AXJ38240.1|1214037_1214670_+	Riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	98.6	5.5e-111
AXJ38241.1|1214680_1215862_+	Riboflavin biosynthesis protein RibBA	NA	A0A2H4PQS2	Staphylococcus_phage	99.2	2.1e-225
AXJ38242.1|1215874_1216339_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	100.0	4.5e-70
AXJ38243.1|1216460_1217462_-	Proline dehydrogenase 1	NA	A0A2H4PQT6	Staphylococcus_phage	99.4	2.6e-184
AXJ38244.1|1217695_1218523_+	Phospholipase YtpA	NA	NA	NA	NA	NA
AXJ38245.1|1219094_1219496_+	HTH-type transcriptional regulator rot	NA	NA	NA	NA	NA
AXJ38246.1|1219618_1220182_-	16S rRNA m(4)C1402 methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
AXJ38247.1|1220178_1221132_-	coproporphyrinogen III oxidase	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
AXJ38248.1|1221241_1222423_+	Multidrug resistance protein MdtH	NA	A0A2H4PQR6	Staphylococcus_phage	99.7	7.3e-218
AXJ38249.1|1222710_1225128_+|tRNA	Leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.5	0.0e+00
AXJ38250.1|1225149_1225461_+	molybdopterin biosynthesis-like protein MoeZ	NA	A0A2H4PQR9	Staphylococcus_phage	99.0	4.8e-52
AXJ38251.1|1225786_1232347_+	Extracellular matrix-binding protein ebh precursor	NA	A0A2H4PQU6	Staphylococcus_phage	98.2	4.0e-305
>prophage 7
CP022894	Staphylococcus aureus strain 191 chromosome, complete genome	2911744	1362238	1371281	2911744	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
AXJ38360.1|1362238_1363243_+	Holliday junction ATP-dependent DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
AXJ38361.1|1363244_1364270_+|tRNA	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
AXJ38362.1|1364292_1365432_+|tRNA	Queuine tRNA-ribosyltransferase	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
AXJ38363.1|1365450_1365711_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
AXJ38364.1|1365985_1368265_+	bifunctional preprotein translocase subunit SecD/SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
AXJ38365.1|1368467_1370741_+	Single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.3	8.1e-64
AXJ38366.1|1370762_1371281_+	Adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
>prophage 8
CP022894	Staphylococcus aureus strain 191 chromosome, complete genome	2911744	1939795	1985507	2911744	holin,head,portal,tail	Staphylococcus_phage(75.36%)	72	NA	NA
AXJ38872.1|1939795_1941241_-	putative cell wall hydrolase LytN precursor	NA	Q4ZB16	Staphylococcus_virus	100.0	4.8e-296
AXJ38873.1|1941221_1941659_-|holin	Bacteriophage holin	holin	S4SVG2	Staphylococcus_phage	99.3	4.1e-73
AXJ38874.1|1941714_1942110_-	hypothetical protein	NA	Q4ZBP5	Staphylococcus_phage	100.0	2.7e-68
AXJ38875.1|1942115_1943288_-	hypothetical protein	NA	A0A0N9BAZ1	Staphylococcus_phage	98.5	4.3e-194
AXJ38876.1|1943300_1945175_-	Bifunctional autolysin precursor	NA	Q4ZBP7	Staphylococcus_phage	100.0	0.0e+00
AXJ38877.1|1945311_1945611_-	hypothetical protein	NA	Q4ZBP8	Staphylococcus_phage	100.0	1.3e-46
AXJ38878.1|1945651_1945828_-	hypothetical protein	NA	Q8LTH6	Staphylococcus_phage	100.0	6.1e-28
AXJ38879.1|1945828_1946206_-	hypothetical protein	NA	Q8LTH7	Staphylococcus_phage	100.0	7.3e-55
AXJ38880.1|1946205_1948029_-	hypothetical protein	NA	M9NUJ5	Staphylococcus_phage	97.7	1.8e-292
AXJ38881.1|1948028_1949927_-	hypothetical protein	NA	A0A0H3U448	Staphylococcus_phage	98.4	0.0e+00
AXJ38882.1|1949939_1951826_-|tail	Prophage endopeptidase tail	tail	A0A0H3U2R3	Staphylococcus_phage	100.0	0.0e+00
AXJ38883.1|1951836_1952778_-|tail	Phage tail protein	tail	A0A2H4JFG3	uncultured_Caudovirales_phage	99.0	2.8e-180
AXJ38884.1|1952792_1955678_-	hypothetical protein	NA	A0A2H4JGV1	uncultured_Caudovirales_phage	95.3	0.0e+00
AXJ38885.1|1955681_1955966_-	hypothetical protein	NA	A0A0N7E0V9	Staphylococcus_phage	100.0	8.8e-45
AXJ38886.1|1956010_1956517_-	Phage protein	NA	Q4ZBQ7	Staphylococcus_phage	100.0	2.7e-92
AXJ38887.1|1956583_1957141_-	hypothetical protein	NA	Q4ZBQ8	Staphylococcus_phage	100.0	8.2e-103
AXJ38888.1|1957141_1957567_-	hypothetical protein	NA	A0A0E3XBP2	Staphylococcus_phage	100.0	1.2e-74
AXJ38889.1|1957929_1958613_-	hypothetical protein	NA	W5RA17	Staphylococcus_phage	46.2	1.2e-42
AXJ38890.1|1958705_1958996_-	hypothetical protein	NA	A0A0E3XCY8	Staphylococcus_phage	98.8	3.8e-43
AXJ38891.1|1958982_1959318_-	hypothetical protein	NA	A7YGU9	Staphylococcus_virus	98.2	8.8e-60
AXJ38892.1|1959310_1959625_-|head,tail	Phage gp6-like head-tail connector protein	head,tail	Q4ZB38	Staphylococcus_virus	100.0	2.6e-53
AXJ38893.1|1959624_1959951_-	hypothetical protein	NA	Q4ZB39	Staphylococcus_virus	99.1	1.0e-52
AXJ38894.1|1959967_1960927_-	hypothetical protein	NA	Q4ZB40	Staphylococcus_virus	100.0	1.9e-179
AXJ38895.1|1960938_1961463_-	Phage minor structural protein GP20	NA	Q4ZB42	Staphylococcus_virus	100.0	2.9e-65
AXJ38896.1|1961560_1962523_-	NAD(+)--arginine ADP-ribosyltransferase EFV	NA	Q4ZB44	Staphylococcus_virus	99.7	4.6e-178
AXJ38897.1|1962479_1963898_-|portal	Phage portal protein, SPP1 Gp6-like	portal	R4IFL5	Staphylococcus_phage	99.4	4.3e-273
AXJ38898.1|1963911_1965120_-	Terminase-like family protein	NA	R4IG95	Staphylococcus_phage	100.0	6.1e-236
AXJ38899.1|1965112_1965607_-	Terminase small subunit	NA	R4IH30	Staphylococcus_phage	99.4	1.4e-74
AXJ38900.1|1965935_1966358_-	hypothetical protein	NA	A0A0F6N3E5	Staphylococcus_phage	100.0	1.2e-74
AXJ38901.1|1966381_1966528_-	hypothetical protein	NA	Q4ZBJ8	Staphylococcus_phage	100.0	7.5e-16
AXJ38902.1|1966528_1966705_-	Transcriptional activator RinB	NA	R4IFL3	Staphylococcus_phage	98.2	1.1e-21
AXJ38903.1|1966694_1966931_-	hypothetical protein	NA	A0A0N7E0U3	Staphylococcus_phage	97.4	1.8e-35
AXJ38904.1|1966955_1967192_-	hypothetical protein	NA	C8CH06	Staphylococcus_phage	98.7	2.4e-35
AXJ38905.1|1967228_1967771_-	Deoxyuridine 5'-triphosphate nucleotidohydrolase	NA	Q4ZD81	Staphylococcus_virus	100.0	1.5e-96
AXJ38906.1|1967775_1968012_-	hypothetical protein	NA	C8CH04	Staphylococcus_phage	100.0	1.1e-35
AXJ38907.1|1968004_1968313_-	hypothetical protein	NA	Q4ZD83	Staphylococcus_virus	100.0	6.2e-52
AXJ38908.1|1968309_1968657_-	YopX protein	NA	D2JGL4	Staphylococcus_phage	100.0	5.9e-59
AXJ38909.1|1968653_1969055_-	hypothetical protein	NA	Q4ZAC1	Staphylococcus_virus	100.0	1.1e-69
AXJ38910.1|1969067_1969310_-	hypothetical protein	NA	D2JGL2	Staphylococcus_phage	100.0	1.7e-41
AXJ38911.1|1969315_1969570_-	hypothetical protein	NA	D2JGL1	Staphylococcus_phage	100.0	1.3e-42
AXJ38912.1|1969655_1969841_-	hypothetical protein	NA	A0A0N9BBI1	Staphylococcus_phage	100.0	1.9e-27
AXJ38913.1|1969845_1970250_-	hypothetical protein	NA	A0A0H4ISQ5	Staphylococcus_phage	99.3	2.6e-66
AXJ38914.1|1970246_1970672_-	DNA N-6-adenine-methyltransferase (Dam)	NA	C8CGZ6	Staphylococcus_phage	100.0	4.7e-82
AXJ38915.1|1970681_1970903_-	hypothetical protein	NA	Q9G021	Staphylococcus_phage	100.0	1.3e-35
AXJ38916.1|1970906_1971122_-	hypothetical protein	NA	Q4ZBU5	Staphylococcus_virus	100.0	4.8e-35
AXJ38917.1|1971118_1972360_-	Replicative DNA helicase	NA	M9NSS7	Staphylococcus_phage	99.8	5.7e-229
AXJ38918.1|1972356_1972713_-	hypothetical protein	NA	M9NS37	Staphylococcus_phage	100.0	8.2e-64
AXJ38919.1|1972712_1973468_-	Replication initiation and membrane attachment	NA	C8CGZ1	Staphylococcus_phage	100.0	3.8e-143
AXJ38920.1|1973460_1974135_-	hypothetical protein	NA	Q4ZCW9	Staphylococcus_virus	97.8	2.0e-127
AXJ38921.1|1974135_1974687_-	NUMOD4 motif protein	NA	A0A2H4PQR4	Staphylococcus_phage	100.0	1.6e-106
AXJ38922.1|1974697_1975123_-	Single-stranded DNA-binding protein ssb	NA	B7T0A5	Staphylococcus_virus	88.7	1.6e-58
AXJ38923.1|1975122_1975746_-	hypothetical protein	NA	A0A2H4PQQ6	Staphylococcus_phage	100.0	1.4e-114
AXJ38924.1|1975738_1975960_-	hypothetical protein	NA	A0A1X9H047	Staphylococcus_phage	100.0	1.2e-33
AXJ38925.1|1975969_1976230_-	hypothetical protein	NA	Q4ZDR5	Staphylococcus_virus	98.8	5.8e-43
AXJ38926.1|1976323_1976485_-	hypothetical protein	NA	C8CGY5	Staphylococcus_phage	100.0	2.5e-20
AXJ38927.1|1976477_1976606_-	hypothetical protein	NA	C8CGY4	Staphylococcus_phage	100.0	7.3e-15
AXJ38928.1|1976664_1976895_+	hypothetical protein	NA	C8CGY3	Staphylococcus_phage	100.0	2.3e-35
AXJ38929.1|1976869_1977046_-	hypothetical protein	NA	S4SVC9	Staphylococcus_phage	96.6	2.4e-24
AXJ38930.1|1977061_1977814_-	Phage antirepressor protein KilAC domain protein	NA	A0A1X9H0A0	Staphylococcus_phage	99.6	4.3e-139
AXJ38931.1|1977815_1978001_-	helix-turn-helix protein	NA	S4SUN2	Staphylococcus_phage	100.0	1.7e-25
AXJ38932.1|1978440_1978650_+	hypothetical protein	NA	W5R9J5	Staphylococcus_phage	100.0	1.2e-30
AXJ38933.1|1978639_1978783_-	hypothetical protein	NA	W5R8I6	Staphylococcus_phage	100.0	2.5e-16
AXJ38934.1|1978797_1979241_-	hypothetical protein	NA	W5R971	Staphylococcus_phage	99.3	4.4e-75
AXJ38935.1|1979253_1979502_-	Helix-turn-helix domain protein	NA	A0A2K9VBT6	Staphylococcus_phage	100.0	1.7e-39
AXJ38936.1|1979665_1979989_+	Antitoxin PezA	NA	A0A0H3U2V8	Staphylococcus_phage	100.0	2.0e-53
AXJ38937.1|1980001_1980466_+	hypothetical protein	NA	A0A0N9BAX8	Staphylococcus_phage	100.0	8.4e-85
AXJ38938.1|1980497_1981178_+	PemK-like protein	NA	A0A2H4PQQ5	Staphylococcus_phage	100.0	5.1e-123
AXJ38939.1|1981384_1982770_+	DNA-invertase hin	NA	I1W625	Staphylococcus_phage	100.0	2.5e-265
AXJ38940.1|1982886_1983060_-	50S ribosomal protein L32	NA	NA	NA	NA	NA
AXJ38941.1|1983139_1983697_-	hypothetical protein	NA	NA	NA	NA	NA
AXJ38942.1|1983823_1984963_+	hypothetical protein	NA	NA	NA	NA	NA
AXJ38943.1|1985024_1985507_-	Phosphopantetheine adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	46.2	2.6e-28
>prophage 9
CP022894	Staphylococcus aureus strain 191 chromosome, complete genome	2911744	2748033	2758387	2911744		Streptococcus_phage(80.0%)	11	NA	NA
AXJ39653.1|2748033_2749638_+	Transposase DDE domain protein	NA	A0ZS58	Staphylococcus_virus	44.4	1.1e-128
AXJ39654.1|2750358_2751018_-	5-amino-6-(5-phosphoribosylamino)uracil reductase	NA	A0A1B0RXM8	Streptococcus_phage	100.0	3.1e-125
AXJ39655.1|2751128_2751485_-	hypothetical protein	NA	A0A1B0RXM3	Streptococcus_phage	99.2	4.2e-60
AXJ39656.1|2751508_2752081_-	bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor	NA	A0A1B0RXM1	Streptococcus_phage	99.5	5.5e-102
AXJ39657.1|2752356_2753151_-	Aminoglycoside 3'-phosphotransferase	NA	E4ZFP6	Streptococcus_phage	100.0	2.3e-154
AXJ39658.1|2753243_2753786_-	TDP-fucosamine acetyltransferase	NA	A0A1B0RXL7	Streptococcus_phage	100.0	8.9e-94
AXJ39659.1|2753782_2754691_-	Aminoglycoside 6-adenylyltransferase	NA	E4ZFP8	Streptococcus_phage	100.0	2.8e-177
AXJ39660.1|2754723_2755458_-	putative methyltransferase YcgJ	NA	A0A1X9I6N4	Streptococcus_phage	100.0	1.5e-141
AXJ39661.1|2755438_2756308_-	Nucleotidyltransferase domain protein	NA	A0A1X9I6C9	Streptococcus_phage	95.8	4.3e-159
AXJ39662.1|2756410_2756656_-	hypothetical protein	NA	NA	NA	NA	NA
AXJ39663.1|2756782_2758387_-	Transposase DDE domain protein	NA	A0ZS58	Staphylococcus_virus	44.4	1.1e-128
