The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP022893	Staphylococcus aureus strain 61 chromosome, complete genome	2911744	398473	415727	2911744		Staphylococcus_phage(76.19%)	27	NA	NA
AXJ34799.1|398473_398665_-	hypothetical protein	NA	U3PCX8	Staphylococcus_phage	80.0	1.1e-22
AXJ34800.1|398908_399205_+	30S ribosomal protein S6	NA	NA	NA	NA	NA
AXJ34801.1|399225_399729_+	Single-stranded DNA-binding protein ssb	NA	A0A1W6JPL9	Staphylococcus_phage	74.7	1.2e-60
AXJ34802.1|399780_400023_+	30S ribosomal protein S18	NA	NA	NA	NA	NA
AXJ34803.1|400254_400974_-	PemK-like protein	NA	Q4ZE81	Staphylococcus_phage	29.8	3.7e-23
AXJ34804.1|401086_402301_-	Tyrosine recombinase XerD	NA	Q4ZE80	Staphylococcus_phage	97.3	3.3e-221
AXJ34805.1|402461_403085_-	Helix-turn-helix domain protein	NA	NA	NA	NA	NA
AXJ34806.1|403233_403398_+	Helix-turn-helix domain protein	NA	NA	NA	NA	NA
AXJ34807.1|403398_403671_+	hypothetical protein	NA	Q4ZE77	Staphylococcus_phage	97.8	5.0e-45
AXJ34808.1|403682_403856_+	hypothetical protein	NA	NA	NA	NA	NA
AXJ34809.1|403822_404026_+	hypothetical protein	NA	A0A1W6JQF4	Staphylococcus_phage	98.5	2.0e-30
AXJ34810.1|404027_404411_+	hypothetical protein	NA	A0A1W6JQI7	Staphylococcus_phage	96.1	4.8e-62
AXJ34811.1|404411_404738_+	hypothetical protein	NA	Q4ZE75	Staphylococcus_phage	96.3	3.5e-53
AXJ34812.1|404802_405672_+	hypothetical protein	NA	A0A2H4JEH3	uncultured_Caudovirales_phage	76.1	1.0e-131
AXJ34813.1|405683_407054_+	hypothetical protein	NA	A0A2H4JBE3	uncultured_Caudovirales_phage	95.0	2.4e-257
AXJ34814.1|407296_407653_+	hypothetical protein	NA	A0A2H4JBD4	uncultured_Caudovirales_phage	78.8	3.0e-50
AXJ34815.1|407654_407918_+	hypothetical protein	NA	NA	NA	NA	NA
AXJ34816.1|407919_408561_+	hypothetical protein	NA	Q4ZE67	Staphylococcus_phage	93.4	2.5e-111
AXJ34817.1|409268_409613_+	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	91.7	1.3e-50
AXJ34818.1|409643_410297_+	hypothetical protein	NA	Q4ZE82	Staphylococcus_phage	99.5	7.6e-116
AXJ34819.1|410349_410877_+	hypothetical protein	NA	Q4ZE87	Staphylococcus_phage	99.4	2.0e-90
AXJ34820.1|410879_411221_+	hypothetical protein	NA	Q4ZE86	Staphylococcus_phage	98.2	1.1e-57
AXJ34821.1|411217_411787_+	Terminase small subunit	NA	Q4ZE85	Staphylococcus_phage	98.4	4.6e-101
AXJ34822.1|412063_413032_+	Abi-like protein	NA	A0A0H4U080	Erysipelothrix_phage	27.3	2.7e-24
AXJ34823.1|413209_413611_+	hypothetical protein	NA	A0A2H4J577	uncultured_Caudovirales_phage	59.1	5.1e-22
AXJ34824.1|413728_414241_+	hypothetical protein	NA	Q4ZE83	Staphylococcus_phage	100.0	1.4e-69
AXJ34825.1|414554_415727_+	Transposase, Mutator family	NA	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
>prophage 2
CP022893	Staphylococcus aureus strain 61 chromosome, complete genome	2911744	765502	773323	2911744		Hokovirus(16.67%)	10	NA	NA
AXJ35137.1|765502_766558_-	Histidine protein kinase SaeS	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
AXJ35138.1|766557_767244_-	Response regulator SaeR	NA	NA	NA	NA	NA
AXJ35139.1|767218_767692_-	DoxX	NA	NA	NA	NA	NA
AXJ35140.1|768034_768475_-	Electron transfer DM13	NA	NA	NA	NA	NA
AXJ35141.1|768754_769339_-	hypothetical protein	NA	NA	NA	NA	NA
AXJ35142.1|769437_770151_-	7-carboxy-7-deazaguanine synthase	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
AXJ35143.1|770154_770574_-	6-carboxy-5,6,7,8-tetrahydropterin synthase	NA	S4U060	uncultured_phage	28.7	6.3e-07
AXJ35144.1|770575_771244_-	7-cyano-7-deazaguanine synthase	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
AXJ35145.1|771594_772188_+	Anthranilate synthase component 2	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
AXJ35146.1|772171_773323_+	Aminodeoxychorismate synthase component 1	NA	S4VNU7	Pandoravirus	35.7	6.0e-23
>prophage 3
CP022893	Staphylococcus aureus strain 61 chromosome, complete genome	2911744	788112	801775	2911744		uncultured_Caudovirales_phage(50.0%)	11	NA	NA
AXJ35157.1|788112_789030_-	Putative lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	2.1e-07
AXJ35158.1|789408_791013_+	Transposase DDE domain protein	NA	A0ZS58	Staphylococcus_virus	44.4	1.1e-128
AXJ35159.1|791139_792645_-	Di-/tripeptide transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
AXJ35160.1|792985_793486_-	NADPH-dependent 7-cyano-7-deazaguanine reductase	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
AXJ35161.1|793505_794372_-	EamA-like transporter family protein	NA	NA	NA	NA	NA
AXJ35162.1|795172_795571_+	ribonucleotide reductase stimulatory protein	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
AXJ35163.1|795533_797639_+	Ribonucleoside-diphosphate reductase subunit alpha 2	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
AXJ35164.1|797756_798728_+	Ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
AXJ35165.1|799060_800074_+	Fe(3+) dicitrate transport system permease protein FecD	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.0	2.2e-138
AXJ35166.1|800060_801017_+	Iron-uptake system permease protein FeuC	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
AXJ35167.1|801013_801775_+	putative siderophore transport system ATP-binding protein YusV	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	6.5e-18
>prophage 4
CP022893	Staphylococcus aureus strain 61 chromosome, complete genome	2911744	852627	869589	2911744	integrase	Staphylococcus_phage(81.25%)	25	853999:854014	861397:861412
AXJ35212.1|852627_855000_+	Ribonuclease R	NA	Q0GXV6	Lactococcus_phage	38.8	4.3e-92
853999:854014	attL	GCAAATGAAACAGTTG	NA	NA	NA	NA
AXJ35213.1|855021_855486_+	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	98.7	1.6e-80
AXJ35214.1|856048_857155_-|integrase	Putative prophage phiRv2 integrase	integrase	H0UST3	Bacillus_phage	44.2	5.9e-76
AXJ35215.1|857160_857745_-	hypothetical protein	NA	NA	NA	NA	NA
AXJ35216.1|857965_858172_+	hypothetical protein	NA	NA	NA	NA	NA
AXJ35217.1|858207_858435_+	helix-turn-helix protein	NA	NA	NA	NA	NA
AXJ35218.1|858431_858605_+	hypothetical protein	NA	NA	NA	NA	NA
AXJ35219.1|858571_858775_+	hypothetical protein	NA	A0A1W6JQF4	Staphylococcus_phage	98.5	2.0e-30
AXJ35220.1|858776_859160_+	hypothetical protein	NA	A0A1W6JQI7	Staphylococcus_phage	96.9	3.3e-63
AXJ35221.1|859160_859484_+	hypothetical protein	NA	A0A1W6JQH0	Staphylococcus_phage	93.3	2.6e-40
AXJ35222.1|859528_861145_+	hypothetical protein	NA	A0A1W6JPF4	Staphylococcus_phage	78.1	3.0e-246
AXJ35223.1|861320_862124_+	hypothetical protein	NA	Q4ZE69	Staphylococcus_phage	97.0	3.1e-151
861397:861412	attR	CAACTGTTTCATTTGC	NA	NA	NA	NA
AXJ35224.1|862110_862383_+	hypothetical protein	NA	Q4ZE68	Staphylococcus_phage	100.0	3.2e-44
AXJ35225.1|862384_863026_+	hypothetical protein	NA	Q4ZE67	Staphylococcus_phage	92.5	2.1e-110
AXJ35226.1|863475_863817_+	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	98.2	4.2e-57
AXJ35227.1|863828_864407_+	hypothetical protein	NA	A0A2H4JBG0	uncultured_Caudovirales_phage	38.9	4.8e-29
AXJ35228.1|864424_864643_+	hypothetical protein	NA	NA	NA	NA	NA
AXJ35229.1|864693_865221_+	hypothetical protein	NA	A0A1W6JQH7	Staphylococcus_phage	96.6	1.7e-86
AXJ35230.1|865223_865565_+	hypothetical protein	NA	A0A1W6JQM3	Staphylococcus_phage	100.0	1.7e-58
AXJ35231.1|865561_866131_+	Terminase small subunit	NA	Q4ZE85	Staphylococcus_phage	98.4	3.5e-101
AXJ35232.1|866345_866918_+	hypothetical protein	NA	NA	NA	NA	NA
AXJ35233.1|866938_867235_+	hypothetical protein	NA	NA	NA	NA	NA
AXJ35234.1|867234_867675_+	preprotein translocase subunit SecB	NA	NA	NA	NA	NA
AXJ35235.1|867980_868331_+	hypothetical protein	NA	NA	NA	NA	NA
AXJ35236.1|868416_869589_+	Transposase, Mutator family	NA	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
>prophage 5
CP022893	Staphylococcus aureus strain 61 chromosome, complete genome	2911744	986101	1033491	2911744	portal,capsid,protease,holin,tail	Staphylococcus_phage(98.51%)	67	NA	NA
AXJ35344.1|986101_987274_+	Transposase, Mutator family	NA	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
AXJ35345.1|987530_988586_+	putative leukocidin-like protein 2 precursor	NA	A0A1X9IGW5	Staphylococcus_phage	34.3	2.8e-35
AXJ35346.1|988607_989624_+	putative leukocidin-like protein 1 precursor	NA	A0A1X9IGW5	Staphylococcus_phage	30.2	6.7e-26
AXJ35347.1|989861_990686_-	Phospholipase C precursor	NA	A0A1P8L6H7	Staphylococcus_phage	100.0	6.8e-162
AXJ35348.1|990742_991780_-	Tyrosine recombinase XerC	NA	A0A1X9H022	Staphylococcus_phage	100.0	2.6e-179
AXJ35349.1|991973_992678_-	PemK-like protein	NA	U5U4R0	Staphylococcus_phage	100.0	4.6e-127
AXJ35350.1|992817_992985_-	hypothetical protein	NA	U5U774	Staphylococcus_phage	100.0	1.7e-24
AXJ35351.1|993054_993240_-	hypothetical protein	NA	U5U7D6	Staphylococcus_phage	100.0	2.3e-25
AXJ35352.1|993236_993383_-	hypothetical protein	NA	A0A1X9H032	Staphylococcus_phage	100.0	3.3e-19
AXJ35353.1|993456_994311_-	HIRAN domain protein	NA	A0A1X9H037	Staphylococcus_phage	100.0	7.3e-151
AXJ35354.1|994322_995039_-	putative HTH-type transcriptional regulator	NA	A0A1X9H038	Staphylococcus_phage	100.0	5.4e-131
AXJ35355.1|995202_995445_+	hypothetical protein	NA	A0A1X9H035	Staphylococcus_phage	100.0	1.6e-39
AXJ35356.1|995457_995904_+	hypothetical protein	NA	A0A1W6JPI3	Staphylococcus_phage	100.0	1.9e-78
AXJ35357.1|995918_996059_+	hypothetical protein	NA	A0A2I6PDT8	Staphylococcus_phage	100.0	1.9e-16
AXJ35358.1|996051_996261_-	hypothetical protein	NA	A0A2I6PDR8	Staphylococcus_phage	100.0	9.1e-31
AXJ35359.1|996317_997067_+	Phage antirepressor protein KilAC domain protein	NA	A0A1W6JPN2	Staphylococcus_phage	99.6	2.0e-136
AXJ35360.1|997082_997280_+	hypothetical protein	NA	O80075	Staphylococcus_phage	100.0	2.5e-30
AXJ35361.1|997266_997647_-	hypothetical protein	NA	Q9T1Z5	Staphylococcus_phage	100.0	1.2e-68
AXJ35362.1|997701_998025_+	hypothetical protein	NA	A0A075LYF5	Staphylococcus_phage	100.0	3.0e-57
AXJ35363.1|998021_998183_+	hypothetical protein	NA	A0A1P8L6G0	Staphylococcus_phage	100.0	1.9e-20
AXJ35364.1|998277_998580_+	hypothetical protein	NA	A0A1P8L6F8	Staphylococcus_phage	100.0	7.0e-48
AXJ35365.1|998584_998845_+	hypothetical protein	NA	A0A1P8L6F5	Staphylococcus_phage	100.0	5.2e-44
AXJ35366.1|998853_999117_+	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
AXJ35367.1|999125_1001069_+	hypothetical protein	NA	S4V9K6	Staphylococcus_phage	100.0	0.0e+00
AXJ35368.1|1001070_1001991_+	recombination and repair protein RecT	NA	A0A2I6PDH5	Staphylococcus_phage	99.7	8.6e-166
AXJ35369.1|1002203_1002689_+	Beta-lactamase superfamily domain protein	NA	S4SWA4	Staphylococcus_phage	99.4	1.2e-86
AXJ35370.1|1002689_1003160_+	Single-stranded DNA-binding protein ssb	NA	A0A1P8L6D9	Staphylococcus_phage	100.0	5.7e-81
AXJ35371.1|1003189_1004083_+	Replication initiation and membrane attachment	NA	A0A1P8L6F0	Staphylococcus_phage	100.0	3.2e-141
AXJ35372.1|1004089_1004308_+	hypothetical protein	NA	A0A1P8L6E4	Staphylococcus_phage	100.0	1.4e-37
AXJ35373.1|1004316_1004721_+	Endodeoxyribonuclease RusA	NA	A0A075M042	Staphylococcus_phage	99.3	9.3e-72
AXJ35374.1|1004733_1005105_+	PVL ORF-50-like family protein	NA	A0A2I6PDG3	Staphylococcus_phage	91.1	1.4e-50
AXJ35375.1|1005104_1005362_+	hypothetical protein	NA	A0A1X9H067	Staphylococcus_phage	98.8	6.3e-42
AXJ35376.1|1005364_1005607_+	hypothetical protein	NA	A0A2H4PQJ3	Staphylococcus_phage	98.8	1.2e-39
AXJ35377.1|1005618_1005867_+	hypothetical protein	NA	Q8SDV5	Staphylococcus_phage	95.1	4.5e-37
AXJ35378.1|1005863_1006400_+	dUTPase	NA	Q9MBR0	Staphylococcus_prophage	100.0	1.6e-95
AXJ35379.1|1006436_1006682_+	hypothetical protein	NA	A0A2I6PDW7	Staphylococcus_phage	97.5	4.2e-35
AXJ35380.1|1006678_1006885_+	hypothetical protein	NA	A0A2I6PEA2	Staphylococcus_phage	94.1	1.1e-17
AXJ35381.1|1006881_1007031_+	Transcriptional activator RinB	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
AXJ35382.1|1007030_1007231_+	hypothetical protein	NA	D2JLD9	Staphylococcus_phage	98.5	5.3e-28
AXJ35383.1|1007258_1007675_+	hypothetical protein	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
AXJ35384.1|1007909_1008206_+	HNH endonuclease	NA	A0EWY8	Staphylococcus_phage	100.0	1.7e-51
AXJ35385.1|1008336_1008681_+	hypothetical protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
AXJ35386.1|1008677_1010339_+	Phage Terminase	NA	Q8LTH3	Staphylococcus_phage	100.0	0.0e+00
AXJ35387.1|1010354_1011518_+|portal	Phage portal protein	portal	A0A1W6JPQ9	Staphylococcus_phage	100.0	1.8e-216
AXJ35388.1|1011501_1012239_+|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A1W6JPK0	Staphylococcus_phage	100.0	1.8e-129
AXJ35389.1|1012186_1013407_+|capsid	Phage capsid family protein	capsid	A0A075LYD8	Staphylococcus_phage	99.5	8.6e-230
AXJ35390.1|1013426_1013687_+	hypothetical protein	NA	A0A0H3U504	Staphylococcus_phage	100.0	6.4e-42
AXJ35391.1|1013687_1013984_+	hypothetical protein	NA	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.6e-47
AXJ35392.1|1013967_1014330_+	hypothetical protein	NA	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
AXJ35393.1|1014326_1014731_+	hypothetical protein	NA	A0A1W6JPJ1	Staphylococcus_phage	100.0	2.5e-69
AXJ35394.1|1014727_1015135_+	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	100.0	7.1e-72
AXJ35395.1|1015135_1015777_+	hypothetical protein	NA	A0A1W6JPP5	Staphylococcus_phage	100.0	1.1e-119
AXJ35396.1|1016093_1016444_+	hypothetical protein	NA	G4KNQ8	Staphylococcus_phage	100.0	7.8e-59
AXJ35397.1|1016494_1016632_+	hypothetical protein	NA	A0A2I6PDX7	Staphylococcus_phage	100.0	3.4e-18
AXJ35398.1|1016688_1021200_+	Murein DD-endopeptidase MepM	NA	A0EX03	Staphylococcus_phage	88.0	0.0e+00
AXJ35399.1|1021196_1022681_+|tail	Phage tail protein	tail	A0A068A242	Staphylococcus_phage	98.8	4.6e-294
AXJ35400.1|1022696_1026482_+	hypothetical protein	NA	A0A1P8L6B8	Staphylococcus_phage	99.8	0.0e+00
AXJ35401.1|1026471_1026624_+	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
AXJ35402.1|1026670_1026958_+	hypothetical protein	NA	D2JLG1	Staphylococcus_phage	100.0	1.3e-43
AXJ35403.1|1027081_1027312_+	hypothetical protein	NA	D2JLG2	Staphylococcus_phage	100.0	1.2e-31
AXJ35404.1|1027849_1028104_+|holin	Bacteriophage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
AXJ35405.1|1028115_1028871_+	putative cell wall hydrolase LytN precursor	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
AXJ35406.1|1029061_1029553_+	Staphylokinase precursor	NA	A0A1X9H028	Staphylococcus_phage	100.0	9.5e-87
AXJ35407.1|1030241_1030538_+	Bacterial SH3 domain protein	NA	A0A1P8L6B4	Staphylococcus_phage	100.0	1.3e-51
AXJ35408.1|1030632_1031082_-	Chemotaxis inhibitory protein precursor	NA	A0A1P8L6A8	Staphylococcus_phage	100.0	1.1e-78
AXJ35409.1|1031765_1032116_+	Complement inhibitor precursor	NA	A0A1P8L6B0	Staphylococcus_phage	100.0	7.5e-54
AXJ35410.1|1033290_1033491_-	Phospholipase C precursor	NA	A0A1P8L6A7	Staphylococcus_phage	100.0	3.4e-27
>prophage 6
CP022893	Staphylococcus aureus strain 61 chromosome, complete genome	2911744	1166652	1232346	2911744	tRNA,protease	Staphylococcus_phage(94.12%)	60	NA	NA
AXJ35528.1|1166652_1167441_-	hypothetical protein	NA	A0A2H4PQI0	Staphylococcus_phage	98.5	3.6e-144
AXJ35529.1|1167810_1167909_-	hypothetical protein	NA	A0A2H4PQI6	Staphylococcus_phage	100.0	1.4e-10
AXJ35530.1|1168804_1169740_+	Leucotoxin LukEv precursor	NA	A0A2H4PQI5	Staphylococcus_phage	100.0	1.4e-174
AXJ35531.1|1169741_1170725_+	Leucotoxin LukDv precursor	NA	A0A2H4PQH7	Staphylococcus_phage	99.4	1.8e-185
AXJ35532.1|1171094_1171886_-	hypothetical protein	NA	NA	NA	NA	NA
AXJ35533.1|1171890_1172364_-	hypothetical protein	NA	NA	NA	NA	NA
AXJ35534.1|1172619_1172838_+	hypothetical protein	NA	A0A2H4PQH0	Staphylococcus_phage	80.6	2.0e-25
AXJ35535.1|1173310_1173892_-	hypothetical protein	NA	A0A2H4PQH6	Staphylococcus_phage	64.8	9.6e-54
AXJ35536.1|1174041_1175214_+	Transposase, Mutator family	NA	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
AXJ35537.1|1176187_1176895_+|protease	Serine protease SplA precursor	protease	A0A2H4PQN3	Staphylococcus_phage	96.6	5.1e-126
AXJ35538.1|1177019_1177742_+|protease	Serine protease SplB precursor	protease	A0A2H4PQN0	Staphylococcus_phage	98.3	3.5e-130
AXJ35539.1|1177799_1178519_+|protease	Serine protease SplC precursor	protease	A0A2H4PQP7	Staphylococcus_phage	98.3	8.6e-129
AXJ35540.1|1178639_1179359_+|protease	Serine protease SplD precursor	protease	A0A2H4PQP9	Staphylococcus_phage	99.6	4.6e-130
AXJ35541.1|1179516_1180236_+|protease	Serine protease SplF precursor	protease	A0A2H4PQP1	Staphylococcus_phage	99.6	1.9e-131
AXJ35542.1|1180596_1182153_+	putative type I restriction enzymeP M protein	NA	A0A2H4PQP4	Staphylococcus_phage	100.0	1.6e-289
AXJ35543.1|1182145_1183375_+	EcoKI restriction-modification system protein HsdS	NA	A0A2H4PQP5	Staphylococcus_phage	64.7	4.0e-134
AXJ35544.1|1183826_1184327_+	hypothetical protein	NA	NA	NA	NA	NA
AXJ35545.1|1184914_1185007_+	hypothetical protein	NA	A0A2H4PQU1	Staphylococcus_phage	87.5	3.7e-05
AXJ35546.1|1185357_1185927_+	Integrase core domain protein	NA	A0A2I7SC85	Paenibacillus_phage	56.8	1.3e-55
AXJ35547.1|1186124_1186697_-	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	93.1	2.3e-23
AXJ35548.1|1186797_1187139_-	hypothetical protein	NA	A0A2H4PQN6	Staphylococcus_phage	94.7	1.1e-54
AXJ35549.1|1187179_1187806_-	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	79.8	3.1e-74
AXJ35550.1|1187880_1188876_-	Telomeric repeat-binding factor 2	NA	A0A2H4PQN2	Staphylococcus_phage	97.9	2.6e-67
AXJ35551.1|1188956_1189571_-	SPBc2 prophage-derived endonuclease YokF precursor	NA	A0A2H4PQM8	Staphylococcus_phage	93.1	1.1e-42
AXJ35552.1|1189882_1190365_+	hypothetical protein	NA	A0A2H4PQN7	Staphylococcus_phage	99.3	3.8e-80
AXJ35553.1|1190523_1192002_+	2-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.6	2.8e-283
AXJ35554.1|1192006_1193008_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.3	5.3e-185
AXJ35555.1|1193004_1193262_-	Putative membrane protein insertion efficiency factor	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
AXJ35556.1|1193321_1193801_+	Putative 8-oxo-dGTP diphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	99.4	3.0e-85
AXJ35557.1|1193781_1194552_+	Prolyl oligopeptidase family protein	NA	A0A2H4PQM6	Staphylococcus_phage	98.8	1.5e-142
AXJ35558.1|1194929_1196522_-	Phosphoenolpyruvate carboxykinase [ATP]	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
AXJ35559.1|1196893_1198090_+	S-adenosylmethionine synthase	NA	A0A2H4PQS6	Staphylococcus_phage	99.5	4.3e-218
AXJ35560.1|1198211_1199120_+	hypothetical protein	NA	A0A2H4PQQ8	Staphylococcus_phage	100.0	3.4e-138
AXJ35561.1|1199331_1200165_+	Glyoxal reductase	NA	A0A2H4PQR8	Staphylococcus_phage	99.3	7.8e-158
AXJ35562.1|1202161_1202515_-	Putative fluoride ion transporter CrcB	NA	A0A2H4PQQ7	Staphylococcus_phage	88.0	6.5e-13
AXJ35563.1|1202511_1202877_-	Putative fluoride ion transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
AXJ35564.1|1203132_1203435_-	hypothetical protein	NA	NA	NA	NA	NA
AXJ35565.1|1203694_1204408_+	Transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
AXJ35566.1|1204847_1205483_-|protease	CAAX amino terminal protease self- immunity	protease	NA	NA	NA	NA
AXJ35567.1|1205778_1206222_+	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	98.6	2.4e-57
AXJ35568.1|1206208_1206652_-	hypothetical protein	NA	NA	NA	NA	NA
AXJ35569.1|1206764_1207235_-	RNA polymerase sigma factor SigS	NA	A0A2H4PQT5	Staphylococcus_phage	98.1	8.8e-82
AXJ35570.1|1207433_1207658_+	hypothetical protein	NA	NA	NA	NA	NA
AXJ35571.1|1207933_1208788_+	Bifunctional autolysin precursor	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
AXJ35572.1|1208874_1210167_-	Arsenical pump membrane protein	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	5.0e-228
AXJ35573.1|1210166_1210481_-	Transcriptional repressor SdpR	NA	A0A2H4PQT4	Staphylococcus_phage	98.1	9.8e-53
AXJ35574.1|1211003_1212506_+	hypothetical protein	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	1.9e-29
AXJ35575.1|1212986_1214030_+	Riboflavin biosynthesis protein RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.8	5.3e-196
AXJ35576.1|1214036_1214669_+	Riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	98.6	5.5e-111
AXJ35577.1|1214679_1215861_+	Riboflavin biosynthesis protein RibBA	NA	A0A2H4PQS2	Staphylococcus_phage	99.2	2.1e-225
AXJ35578.1|1215873_1216338_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	100.0	4.5e-70
AXJ35579.1|1216459_1217461_-	Proline dehydrogenase 1	NA	A0A2H4PQT6	Staphylococcus_phage	99.4	2.6e-184
AXJ35580.1|1217694_1218522_+	Phospholipase YtpA	NA	NA	NA	NA	NA
AXJ35581.1|1219093_1219495_+	HTH-type transcriptional regulator rot	NA	NA	NA	NA	NA
AXJ35582.1|1219617_1220181_-	16S rRNA m(4)C1402 methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
AXJ35583.1|1220177_1221131_-	coproporphyrinogen III oxidase	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
AXJ35584.1|1221240_1222422_+	Multidrug resistance protein MdtH	NA	A0A2H4PQR6	Staphylococcus_phage	99.7	7.3e-218
AXJ35585.1|1222709_1225127_+|tRNA	Leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.5	0.0e+00
AXJ35586.1|1225148_1225460_+	molybdopterin biosynthesis-like protein MoeZ	NA	A0A2H4PQR9	Staphylococcus_phage	99.0	4.8e-52
AXJ35587.1|1225785_1232346_+	Extracellular matrix-binding protein ebh precursor	NA	A0A2H4PQU6	Staphylococcus_phage	98.2	4.0e-305
>prophage 7
CP022893	Staphylococcus aureus strain 61 chromosome, complete genome	2911744	1362237	1371280	2911744	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
AXJ35696.1|1362237_1363242_+	Holliday junction ATP-dependent DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
AXJ35697.1|1363243_1364269_+|tRNA	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
AXJ35698.1|1364291_1365431_+|tRNA	Queuine tRNA-ribosyltransferase	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
AXJ35699.1|1365449_1365710_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
AXJ35700.1|1365984_1368264_+	bifunctional preprotein translocase subunit SecD/SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
AXJ35701.1|1368466_1370740_+	Single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.3	8.1e-64
AXJ35702.1|1370761_1371280_+	Adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
>prophage 8
CP022893	Staphylococcus aureus strain 61 chromosome, complete genome	2911744	1939794	1985506	2911744	head,portal,holin,tail	Staphylococcus_phage(75.36%)	72	NA	NA
AXJ36208.1|1939794_1941240_-	putative cell wall hydrolase LytN precursor	NA	Q4ZB16	Staphylococcus_virus	100.0	4.8e-296
AXJ36209.1|1941220_1941658_-|holin	Bacteriophage holin	holin	S4SVG2	Staphylococcus_phage	99.3	4.1e-73
AXJ36210.1|1941713_1942109_-	hypothetical protein	NA	Q4ZBP5	Staphylococcus_phage	100.0	2.7e-68
AXJ36211.1|1942114_1943287_-	hypothetical protein	NA	A0A0N9BAZ1	Staphylococcus_phage	98.5	4.3e-194
AXJ36212.1|1943299_1945174_-	Bifunctional autolysin precursor	NA	Q4ZBP7	Staphylococcus_phage	100.0	0.0e+00
AXJ36213.1|1945310_1945610_-	hypothetical protein	NA	Q4ZBP8	Staphylococcus_phage	100.0	1.3e-46
AXJ36214.1|1945650_1945827_-	hypothetical protein	NA	Q8LTH6	Staphylococcus_phage	100.0	6.1e-28
AXJ36215.1|1945827_1946205_-	hypothetical protein	NA	Q8LTH7	Staphylococcus_phage	100.0	7.3e-55
AXJ36216.1|1946204_1948028_-	hypothetical protein	NA	M9NUJ5	Staphylococcus_phage	97.7	1.8e-292
AXJ36217.1|1948027_1949926_-	hypothetical protein	NA	A0A0H3U448	Staphylococcus_phage	98.4	0.0e+00
AXJ36218.1|1949938_1951825_-|tail	Prophage endopeptidase tail	tail	A0A0H3U2R3	Staphylococcus_phage	100.0	0.0e+00
AXJ36219.1|1951835_1952777_-|tail	Phage tail protein	tail	A0A2H4JFG3	uncultured_Caudovirales_phage	99.0	2.8e-180
AXJ36220.1|1952791_1955677_-	hypothetical protein	NA	A0A2H4JGV1	uncultured_Caudovirales_phage	95.3	0.0e+00
AXJ36221.1|1955680_1955965_-	hypothetical protein	NA	A0A0N7E0V9	Staphylococcus_phage	100.0	8.8e-45
AXJ36222.1|1956009_1956516_-	Phage protein	NA	Q4ZBQ7	Staphylococcus_phage	100.0	2.7e-92
AXJ36223.1|1956582_1957140_-	hypothetical protein	NA	Q4ZBQ8	Staphylococcus_phage	100.0	8.2e-103
AXJ36224.1|1957140_1957566_-	hypothetical protein	NA	A0A0E3XBP2	Staphylococcus_phage	100.0	1.2e-74
AXJ36225.1|1957928_1958612_-	hypothetical protein	NA	W5RA17	Staphylococcus_phage	46.2	1.2e-42
AXJ36226.1|1958704_1958995_-	hypothetical protein	NA	A0A0E3XCY8	Staphylococcus_phage	98.8	3.8e-43
AXJ36227.1|1958981_1959317_-	hypothetical protein	NA	A7YGU9	Staphylococcus_virus	98.2	8.8e-60
AXJ36228.1|1959309_1959624_-|head,tail	Phage gp6-like head-tail connector protein	head,tail	Q4ZB38	Staphylococcus_virus	100.0	2.6e-53
AXJ36229.1|1959623_1959950_-	hypothetical protein	NA	Q4ZB39	Staphylococcus_virus	99.1	1.0e-52
AXJ36230.1|1959966_1960926_-	hypothetical protein	NA	Q4ZB40	Staphylococcus_virus	100.0	1.9e-179
AXJ36231.1|1960937_1961462_-	Phage minor structural protein GP20	NA	Q4ZB42	Staphylococcus_virus	100.0	2.9e-65
AXJ36232.1|1961559_1962522_-	NAD(+)--arginine ADP-ribosyltransferase EFV	NA	Q4ZB44	Staphylococcus_virus	99.7	4.6e-178
AXJ36233.1|1962478_1963897_-|portal	Phage portal protein, SPP1 Gp6-like	portal	R4IFL5	Staphylococcus_phage	99.4	4.3e-273
AXJ36234.1|1963910_1965119_-	Terminase-like family protein	NA	R4IG95	Staphylococcus_phage	100.0	6.1e-236
AXJ36235.1|1965111_1965606_-	Terminase small subunit	NA	R4IH30	Staphylococcus_phage	99.4	1.4e-74
AXJ36236.1|1965934_1966357_-	hypothetical protein	NA	A0A0F6N3E5	Staphylococcus_phage	100.0	1.2e-74
AXJ36237.1|1966380_1966527_-	hypothetical protein	NA	Q4ZBJ8	Staphylococcus_phage	100.0	7.5e-16
AXJ36238.1|1966527_1966704_-	Transcriptional activator RinB	NA	R4IFL3	Staphylococcus_phage	98.2	1.1e-21
AXJ36239.1|1966693_1966930_-	hypothetical protein	NA	A0A0N7E0U3	Staphylococcus_phage	97.4	1.8e-35
AXJ36240.1|1966954_1967191_-	hypothetical protein	NA	C8CH06	Staphylococcus_phage	98.7	2.4e-35
AXJ36241.1|1967227_1967770_-	Deoxyuridine 5'-triphosphate nucleotidohydrolase	NA	Q4ZD81	Staphylococcus_virus	100.0	1.5e-96
AXJ36242.1|1967774_1968011_-	hypothetical protein	NA	C8CH04	Staphylococcus_phage	100.0	1.1e-35
AXJ36243.1|1968003_1968312_-	hypothetical protein	NA	Q4ZD83	Staphylococcus_virus	100.0	6.2e-52
AXJ36244.1|1968308_1968656_-	YopX protein	NA	D2JGL4	Staphylococcus_phage	100.0	5.9e-59
AXJ36245.1|1968652_1969054_-	hypothetical protein	NA	Q4ZAC1	Staphylococcus_virus	100.0	1.1e-69
AXJ36246.1|1969066_1969309_-	hypothetical protein	NA	D2JGL2	Staphylococcus_phage	100.0	1.7e-41
AXJ36247.1|1969314_1969569_-	hypothetical protein	NA	D2JGL1	Staphylococcus_phage	100.0	1.3e-42
AXJ36248.1|1969654_1969840_-	hypothetical protein	NA	A0A0N9BBI1	Staphylococcus_phage	100.0	1.9e-27
AXJ36249.1|1969844_1970249_-	hypothetical protein	NA	A0A0H4ISQ5	Staphylococcus_phage	99.3	2.6e-66
AXJ36250.1|1970245_1970671_-	DNA N-6-adenine-methyltransferase (Dam)	NA	C8CGZ6	Staphylococcus_phage	100.0	4.7e-82
AXJ36251.1|1970680_1970902_-	hypothetical protein	NA	Q9G021	Staphylococcus_phage	100.0	1.3e-35
AXJ36252.1|1970905_1971121_-	hypothetical protein	NA	Q4ZBU5	Staphylococcus_virus	100.0	4.8e-35
AXJ36253.1|1971117_1972359_-	Replicative DNA helicase	NA	M9NSS7	Staphylococcus_phage	99.8	5.7e-229
AXJ36254.1|1972355_1972712_-	hypothetical protein	NA	M9NS37	Staphylococcus_phage	100.0	8.2e-64
AXJ36255.1|1972711_1973467_-	Replication initiation and membrane attachment	NA	C8CGZ1	Staphylococcus_phage	100.0	3.8e-143
AXJ36256.1|1973459_1974134_-	hypothetical protein	NA	Q4ZCW9	Staphylococcus_virus	97.8	2.0e-127
AXJ36257.1|1974134_1974686_-	NUMOD4 motif protein	NA	A0A2H4PQR4	Staphylococcus_phage	100.0	1.6e-106
AXJ36258.1|1974696_1975122_-	Single-stranded DNA-binding protein ssb	NA	B7T0A5	Staphylococcus_virus	88.7	1.6e-58
AXJ36259.1|1975121_1975745_-	hypothetical protein	NA	A0A2H4PQQ6	Staphylococcus_phage	100.0	1.4e-114
AXJ36260.1|1975737_1975959_-	hypothetical protein	NA	A0A1X9H047	Staphylococcus_phage	100.0	1.2e-33
AXJ36261.1|1975968_1976229_-	hypothetical protein	NA	Q4ZDR5	Staphylococcus_virus	98.8	5.8e-43
AXJ36262.1|1976322_1976484_-	hypothetical protein	NA	C8CGY5	Staphylococcus_phage	100.0	2.5e-20
AXJ36263.1|1976476_1976605_-	hypothetical protein	NA	C8CGY4	Staphylococcus_phage	100.0	7.3e-15
AXJ36264.1|1976663_1976894_+	hypothetical protein	NA	C8CGY3	Staphylococcus_phage	100.0	2.3e-35
AXJ36265.1|1976868_1977045_-	hypothetical protein	NA	S4SVC9	Staphylococcus_phage	96.6	2.4e-24
AXJ36266.1|1977060_1977813_-	Phage antirepressor protein KilAC domain protein	NA	A0A1X9H0A0	Staphylococcus_phage	99.6	4.3e-139
AXJ36267.1|1977814_1978000_-	helix-turn-helix protein	NA	S4SUN2	Staphylococcus_phage	100.0	1.7e-25
AXJ36268.1|1978439_1978649_+	hypothetical protein	NA	W5R9J5	Staphylococcus_phage	100.0	1.2e-30
AXJ36269.1|1978638_1978782_-	hypothetical protein	NA	W5R8I6	Staphylococcus_phage	100.0	2.5e-16
AXJ36270.1|1978796_1979240_-	hypothetical protein	NA	W5R971	Staphylococcus_phage	99.3	4.4e-75
AXJ36271.1|1979252_1979501_-	Helix-turn-helix domain protein	NA	A0A2K9VBT6	Staphylococcus_phage	100.0	1.7e-39
AXJ36272.1|1979664_1979988_+	Antitoxin PezA	NA	A0A0H3U2V8	Staphylococcus_phage	100.0	2.0e-53
AXJ36273.1|1980000_1980465_+	hypothetical protein	NA	A0A0N9BAX8	Staphylococcus_phage	100.0	8.4e-85
AXJ36274.1|1980496_1981177_+	PemK-like protein	NA	A0A2H4PQQ5	Staphylococcus_phage	100.0	5.1e-123
AXJ36275.1|1981383_1982769_+	DNA-invertase hin	NA	I1W625	Staphylococcus_phage	100.0	2.5e-265
AXJ36276.1|1982885_1983059_-	50S ribosomal protein L32	NA	NA	NA	NA	NA
AXJ36277.1|1983138_1983696_-	hypothetical protein	NA	NA	NA	NA	NA
AXJ36278.1|1983822_1984962_+	hypothetical protein	NA	NA	NA	NA	NA
AXJ36279.1|1985023_1985506_-	Phosphopantetheine adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	46.2	2.6e-28
>prophage 9
CP022893	Staphylococcus aureus strain 61 chromosome, complete genome	2911744	2748033	2758387	2911744		Streptococcus_phage(80.0%)	11	NA	NA
AXJ36990.1|2748033_2749638_+	Transposase DDE domain protein	NA	A0ZS58	Staphylococcus_virus	44.4	1.1e-128
AXJ36991.1|2750358_2751018_-	5-amino-6-(5-phosphoribosylamino)uracil reductase	NA	A0A1B0RXM8	Streptococcus_phage	100.0	3.1e-125
AXJ36992.1|2751128_2751485_-	hypothetical protein	NA	A0A1B0RXM3	Streptococcus_phage	99.2	4.2e-60
AXJ36993.1|2751508_2752081_-	bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor	NA	A0A1B0RXM1	Streptococcus_phage	99.5	5.5e-102
AXJ36994.1|2752356_2753151_-	Aminoglycoside 3'-phosphotransferase	NA	E4ZFP6	Streptococcus_phage	100.0	2.3e-154
AXJ36995.1|2753243_2753786_-	TDP-fucosamine acetyltransferase	NA	A0A1B0RXL7	Streptococcus_phage	100.0	8.9e-94
AXJ36996.1|2753782_2754691_-	Aminoglycoside 6-adenylyltransferase	NA	E4ZFP8	Streptococcus_phage	100.0	2.8e-177
AXJ36997.1|2754723_2755458_-	putative methyltransferase YcgJ	NA	A0A1X9I6N4	Streptococcus_phage	100.0	1.5e-141
AXJ36998.1|2755438_2756308_-	Nucleotidyltransferase domain protein	NA	A0A1X9I6C9	Streptococcus_phage	95.8	4.3e-159
AXJ36999.1|2756410_2756656_-	hypothetical protein	NA	NA	NA	NA	NA
AXJ37000.1|2756782_2758387_-	Transposase DDE domain protein	NA	A0ZS58	Staphylococcus_virus	44.4	1.1e-128
