assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003354665.1_ASM335466v1	CP022902	Staphylococcus aureus strain 165 chromosome, complete genome	1	46225-46335	1	CRISPRCasFinder	no	WYL	WYL,cas3,DEDDh,DinG,csa3	Unclear	TATAAGGACTTAAATTATAAAACGTCCCT	29	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA,NA|59aa|down_1|CP022902.1_48420_48597_-,NA|93aa|down_3|CP022902.1_49251_49530_-	NA|56aa|up_9|CP022902.1_36738_36906_+	COG3425, PksG, 3-hydroxy-3-methylglutaryl CoA synthase [Lipid metabolism]	NA|248aa|up_8|CP022902.1_37742_38486_+	cd08562, GDPD_EcUgpQ_like, Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins	NA|143aa|up_7|CP022902.1_38582_39011_+	cd03454, YdeM, YdeM is a Bacillus subtilis protein that belongs to a family of prokaryotic proteins of unkown function	NA|669aa|up_6|CP022902.1_39056_41063_-	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane]	NA|329aa|up_5|CP022902.1_41162_42149_+	COG4219, MecR1, Antirepressor regulating drug resistance, predicted signal transduction N-terminal membrane component [Transcription / Signal transduction mechanisms]	NA|86aa|up_4|CP022902.1_42120_42378_+	pfam11867, DUF3387, Domain of unknown function (DUF3387)	NA|508aa|up_3|CP022902.1_42371_43895_-	pfam13751, DDE_Tnp_1_6, Transposase DDE domain	NA|169aa|up_2|CP022902.1_44030_44537_-	COG4333, COG4333, Uncharacterized protein conserved in bacteria [Function unknown]	NA|225aa|up_1|CP022902.1_44756_45431_-	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|248aa|up_0|CP022902.1_45460_46204_-	COG5527, COG5527, Protein involved in initiation of plasmid replication [DNA replication, recombination, and repair]	NA|337aa|down_0|CP022902.1_47423_48434_-	pfam03432, Relaxase, Relaxase/Mobilisation nuclease domain	NA|59aa|down_1|CP022902.1_48420_48597_-	NA	NA|130aa|down_2|CP022902.1_48593_48983_-	pfam05713, MobC, Bacterial mobilisation protein (MobC)	NA|93aa|down_3|CP022902.1_49251_49530_-	NA	NA|267aa|down_4|CP022902.1_49626_50427_-	COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|58aa|down_5|CP022902.1_52267_52441_+	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|225aa|down_6|CP022902.1_52470_53145_+	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	WYL|121aa|down_7|CP022902.1_53186_53549_-	COG2378, COG2378, Predicted transcriptional regulator [Transcription]	NA|265aa|down_8|CP022902.1_53824_54619_-	cd05150, APH, Aminoglycoside 3'-phosphotransferase	NA|181aa|down_9|CP022902.1_54711_55254_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family
GCA_003354665.1_ASM335466v1	CP022902	Staphylococcus aureus strain 165 chromosome, complete genome	2	417390-417490	2	CRISPRCasFinder	no		WYL,cas3,DEDDh,DinG,csa3	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA|129aa|up_6|CP022902.1_409996_410383_-,NA|86aa|up_4|CP022902.1_411333_411591_-,NA|221aa|down_1|CP022902.1_418580_419243_-,NA|179aa|down_7|CP022902.1_425334_425871_-	NA|88aa|up_9|CP022902.1_408109_408373_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|84aa|up_8|CP022902.1_408672_408924_+	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|194aa|up_7|CP022902.1_409349_409931_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|129aa|up_6|CP022902.1_409996_410383_-	NA	NA|209aa|up_5|CP022902.1_410634_411261_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|86aa|up_4|CP022902.1_411333_411591_-	NA	NA|508aa|up_3|CP022902.1_411705_413229_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_2|CP022902.1_413244_413814_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_1|CP022902.1_414305_415061_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_0|CP022902.1_415141_416530_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|319aa|down_0|CP022902.1_417506_418463_-	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|221aa|down_1|CP022902.1_418580_419243_-	NA	NA|136aa|down_2|CP022902.1_419385_419793_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|CP022902.1_420305_420884_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|CP022902.1_420883_422152_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|CP022902.1_422189_423656_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|CP022902.1_423680_425222_+	PRK00074, guaA, GMP synthase; Reviewed	NA|179aa|down_7|CP022902.1_425334_425871_-	NA	NA|235aa|down_8|CP022902.1_426263_426968_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|91aa|down_9|CP022902.1_427366_427639_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCA_003354665.1_ASM335466v1	CP022902	Staphylococcus aureus strain 165 chromosome, complete genome	3	657915-658007	3	CRISPRCasFinder	no		WYL,cas3,DEDDh,DinG,csa3	Orphan	CTAAAGGTGAAGAGGAACGCAGTTGGATGCTA	32	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA|36aa|up_3|CP022902.1_654399_654507_+,NA|169aa|down_4|CP022902.1_661754_662261_+,NA|239aa|down_5|CP022902.1_662422_663139_+	NA|313aa|up_9|CP022902.1_648601_649540_+	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|179aa|up_8|CP022902.1_649750_650287_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|159aa|up_7|CP022902.1_650455_650932_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|432aa|up_6|CP022902.1_650971_652267_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|169aa|up_5|CP022902.1_652309_652816_+	pfam08741, YwhD, YwhD family	NA|337aa|up_4|CP022902.1_653314_654325_+	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|36aa|up_3|CP022902.1_654399_654507_+	NA	NA|139aa|up_2|CP022902.1_654599_655016_+	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|554aa|up_1|CP022902.1_655012_656674_+	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|212aa|up_0|CP022902.1_657061_657697_+	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|296aa|down_0|CP022902.1_658075_658963_+	cd01143, YvrC, Periplasmic binding protein YvrC	NA|329aa|down_1|CP022902.1_659074_660061_+	pfam01032, FecCD, FecCD transport family	NA|240aa|down_2|CP022902.1_660115_660835_+	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|267aa|down_3|CP022902.1_660818_661619_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|169aa|down_4|CP022902.1_661754_662261_+	NA	NA|239aa|down_5|CP022902.1_662422_663139_+	NA	NA|263aa|down_6|CP022902.1_663307_664096_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|125aa|down_7|CP022902.1_664346_664721_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|310aa|down_8|CP022902.1_665668_666598_-	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]	NA|75aa|down_9|CP022902.1_666792_667017_-	pfam11148, DUF2922, Protein of unknown function (DUF2922)
GCA_003354665.1_ASM335466v1	CP022902	Staphylococcus aureus strain 165 chromosome, complete genome	4	816306-816386	4	CRISPRCasFinder	no	cas3	WYL,cas3,DEDDh,DinG,csa3	Unclear	TTCTTTATGTTGGGGCCCCGCCAACT	26	1	9	816332-816360|816332-816360|816332-816360|816332-816360|816332-816360|816332-816360|816332-816360|816332-816360|816332-816360	CP022902.1_2848587-2848615|CP022902.1_378885-378857|CP022902.1_378940-378912|CP022902.1_1857013-1856985|CP022902.1_866374-866402|CP022902.1_950766-950794|CP022902.1_1678504-1678532|CP022902.1_2073107-2073135|CP022902.1_2574630-2574602	NA	1	1	Unclear	WYL,cas3,DEDDh,DinG,csa3	NA,NA	cas3|361aa|up_9|CP022902.1_801850_802933_+	COG4098, comFA, Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]	NA|225aa|up_8|CP022902.1_802925_803600_+	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only]	NA|191aa|up_7|CP022902.1_803660_804233_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|844aa|up_6|CP022902.1_804646_807178_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|331aa|up_5|CP022902.1_807610_808603_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|280aa|up_4|CP022902.1_809011_809851_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_3|CP022902.1_810024_810675_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_2|CP022902.1_810671_810908_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_1|CP022902.1_811176_813162_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_0|CP022902.1_813169_816016_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|down_0|CP022902.1_816622_817555_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|down_1|CP022902.1_817560_818400_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|down_2|CP022902.1_818407_818893_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|down_3|CP022902.1_818900_820340_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|down_4|CP022902.1_820406_821342_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_5|CP022902.1_822163_823075_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_6|CP022902.1_823071_824067_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_7|CP022902.1_824176_825121_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_8|CP022902.1_825693_826281_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|290aa|down_9|CP022902.1_826523_827393_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
GCA_003354665.1_ASM335466v1	CP022902	Staphylococcus aureus strain 165 chromosome, complete genome	5	821704-821789	5	CRISPRCasFinder	no	cas3	WYL,cas3,DEDDh,DinG,csa3	Unclear	CCAACTTGCACATTATTGTAAGCTGACTTT	30	1	5	821734-821759|821734-821759|821734-821759|821734-821759|821734-821759	CP022902.1_784751-784726|CP022902.1_1151994-1151969|CP022902.1_2848555-2848580|CP022902.1_784807-784782|CP022902.1_931096-931071	NA	1	1	Unclear	WYL,cas3,DEDDh,DinG,csa3	NA,NA	NA|280aa|up_9|CP022902.1_809011_809851_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_8|CP022902.1_810024_810675_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_7|CP022902.1_810671_810908_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_6|CP022902.1_811176_813162_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_5|CP022902.1_813169_816016_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|up_4|CP022902.1_816622_817555_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|up_3|CP022902.1_817560_818400_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_2|CP022902.1_818407_818893_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_1|CP022902.1_818900_820340_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|up_0|CP022902.1_820406_821342_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_0|CP022902.1_822163_823075_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_1|CP022902.1_823071_824067_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_2|CP022902.1_824176_825121_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_3|CP022902.1_825693_826281_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|290aa|down_4|CP022902.1_826523_827393_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|down_5|CP022902.1_828129_828759_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_6|CP022902.1_829518_830532_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_7|CP022902.1_830584_831595_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_8|CP022902.1_831733_832924_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|254aa|down_9|CP022902.1_833045_833807_+	PRK00042, tpiA, triosephosphate isomerase; Provisional
GCA_003354665.1_ASM335466v1	CP022902	Staphylococcus aureus strain 165 chromosome, complete genome	6	866308-866389	6	CRISPRCasFinder	no		WYL,cas3,DEDDh,DinG,csa3	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	2	866332-866365|866332-866365	CP022902.1_1362823-1362790|CP022902.1_1451261-1451294	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA|38aa|up_1|CP022902.1_865210_865324_+,NA|150aa|down_7|CP022902.1_872906_873356_-,NA|144aa|down_8|CP022902.1_873425_873857_-	NA|206aa|up_9|CP022902.1_860065_860683_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_8|CP022902.1_860837_861332_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_7|CP022902.1_861730_862153_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_6|CP022902.1_862300_863017_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_5|CP022902.1_863099_863639_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_4|CP022902.1_863788_864109_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_3|CP022902.1_864252_864609_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_2|CP022902.1_864766_865147_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|38aa|up_1|CP022902.1_865210_865324_+	NA	NA|293aa|up_0|CP022902.1_865325_866204_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|130aa|down_0|CP022902.1_866942_867332_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|CP022902.1_867324_867621_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|CP022902.1_867870_868896_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|CP022902.1_868888_869584_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|CP022902.1_869601_870423_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|407aa|down_5|CP022902.1_870565_871786_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|243aa|down_6|CP022902.1_871874_872603_-	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|150aa|down_7|CP022902.1_872906_873356_-	NA	NA|144aa|down_8|CP022902.1_873425_873857_-	NA	NA|153aa|down_9|CP022902.1_873873_874332_-	pfam06114, Peptidase_M78, IrrE N-terminal-like domain
GCA_003354665.1_ASM335466v1	CP022902	Staphylococcus aureus strain 165 chromosome, complete genome	7	931097-931379	1	CRT	no		WYL,cas3,DEDDh,DinG,csa3	Orphan	AAAGNCAGCTNNNNANANNNTGCAAGTTGG	30	2	6	931127-931152|931127-931152|931127-931152|931127-931152|931241-931266|931241-931266	CP022902.1_931071-931096|CP022902.1_784726-784751|CP022902.1_1151969-1151994|CP022902.1_2848580-2848555|CP022902.1_821815-821790|CP022902.1_378723-378748	NA	4	4	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA,NA	NA|499aa|up_9|CP022902.1_919986_921483_-	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed	NA|114aa|up_8|CP022902.1_921475_921817_-	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|143aa|up_7|CP022902.1_921816_922245_-	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B	NA|802aa|up_6|CP022902.1_922237_924643_-	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed	NA|128aa|up_5|CP022902.1_924773_925157_-	pfam08810, KapB, Kinase associated protein B	NA|198aa|up_4|CP022902.1_925220_925814_+	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain	NA|126aa|up_3|CP022902.1_926229_926607_+	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	NA|376aa|up_2|CP022902.1_926967_928095_+	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|397aa|up_1|CP022902.1_928402_929593_+	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional	NA|415aa|up_0|CP022902.1_929701_930946_+	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|310aa|down_0|CP022902.1_931448_932378_-	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	NA|460aa|down_1|CP022902.1_932619_933999_-	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|402aa|down_2|CP022902.1_933988_935194_-	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|444aa|down_3|CP022902.1_935544_936876_+	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|192aa|down_4|CP022902.1_937200_937776_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|175aa|down_5|CP022902.1_937780_938305_+	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|down_6|CP022902.1_938320_938896_+	TIGR02227, Inactive_signal_peptidase_IA	NA|1159aa|down_7|CP022902.1_939055_942532_+	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|1218aa|down_8|CP022902.1_942532_946186_+	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|301aa|down_9|CP022902.1_946351_947254_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]
GCA_003354665.1_ASM335466v1	CP022902	Staphylococcus aureus strain 165 chromosome, complete genome	8	1151799-1151985	2	CRT	no		WYL,cas3,DEDDh,DinG,csa3	Orphan	GGCGGGGCCCCAACATAGA	19	3	26	1151818-1151854|1151818-1151854|1151818-1151854|1151818-1151854|1151818-1151854|1151818-1151854|1151874-1151910|1151874-1151910|1151874-1151910|1151874-1151910|1151874-1151910|1151874-1151910|1151874-1151910|1151874-1151910|1151874-1151910|1151930-1151966|1151930-1151966|1151930-1151966|1151930-1151966|1151930-1151966|1151930-1151966|1151930-1151966|1151930-1151966|1151930-1151966|1151930-1151966|1151930-1151966	CP022902.1_1856982-1857018|CP022902.1_866405-866369|CP022902.1_1678535-1678499|CP022902.1_2073138-2073102|CP022902.1_2574599-2574635|CP022902.1_2848618-2848582|CP022902.1_378740-378776|CP022902.1_821798-821762|CP022902.1_1051181-1051145|CP022902.1_1362749-1362785|CP022902.1_1451335-1451299|CP022902.1_1678593-1678557|CP022902.1_2664225-2664189|CP022902.1_1147906-1147942|CP022902.1_1151986-1152022|CP022902.1_152877-152913|CP022902.1_656953-656989|CP022902.1_774364-774328|CP022902.1_775298-775334|CP022902.1_821854-821818|CP022902.1_1362807-1362843|CP022902.1_1451277-1451241|CP022902.1_2063848-2063812|CP022902.1_1077315-1077279|CP022902.1_2549352-2549316|CP022902.1_1147962-1147998	NA	3	3	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA|169aa|up_7|CP022902.1_1145578_1146085_+,NA|62aa|up_4|CP022902.1_1148166_1148352_-,NA|78aa|up_3|CP022902.1_1148973_1149207_-,NA|49aa|up_1|CP022902.1_1151315_1151462_+,NA|66aa|up_0|CP022902.1_1151445_1151643_+,NA|76aa|down_6|CP022902.1_1158998_1159226_+	NA|110aa|up_9|CP022902.1_1143807_1144137_+	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|134aa|up_8|CP022902.1_1144505_1144907_-	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed	NA|169aa|up_7|CP022902.1_1145578_1146085_+	NA	NA|166aa|up_6|CP022902.1_1146343_1146841_+	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|117aa|up_5|CP022902.1_1146994_1147345_+	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN	NA|62aa|up_4|CP022902.1_1148166_1148352_-	NA	NA|78aa|up_3|CP022902.1_1148973_1149207_-	NA	NA|320aa|up_2|CP022902.1_1149683_1150643_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|49aa|up_1|CP022902.1_1151315_1151462_+	NA	NA|66aa|up_0|CP022902.1_1151445_1151643_+	NA	NA|239aa|down_0|CP022902.1_1152199_1152916_-	PRK13350, PRK13350, superantigen-like protein; Reviewed	NA|242aa|down_1|CP022902.1_1153023_1153749_-	PRK13349, PRK13349, superantigen-like protein; Reviewed	NA|242aa|down_2|CP022902.1_1153843_1154569_-	PRK13043, PRK13043, superantigen-like protein; Reviewed	NA|334aa|down_3|CP022902.1_1155006_1156008_+	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional	NA|312aa|down_4|CP022902.1_1156027_1156963_+	PRK12353, PRK12353, putative amino acid kinase; Reviewed	NA|519aa|down_5|CP022902.1_1157134_1158691_+	COG1288, COG1288, Predicted membrane protein [Function unknown]	NA|76aa|down_6|CP022902.1_1158998_1159226_+	NA	NA|316aa|down_7|CP022902.1_1159530_1160478_-	cd09325, TDT_C4-dicarb_trans, C4-dicarboxylate transporters of the Tellurite-resistance/Dicarboxylate Transporter (TDT) family	NA|63aa|down_8|CP022902.1_1160726_1160915_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|45aa|down_9|CP022902.1_1161826_1161961_+	pfam05480, Staph_haemo, Staphylococcus haemolytic protein
GCA_003354665.1_ASM335466v1	CP022902	Staphylococcus aureus strain 165 chromosome, complete genome	9	1857022-1857248	7	CRISPRCasFinder	no		WYL,cas3,DEDDh,DinG,csa3	Orphan	GGGCCCCAACACAGAAGCTGGCCAATAGTCAGCTTTCAATAATGTGCAAGTTGG	54	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA,NA	NA|199aa|up_9|CP022902.1_1847576_1848173_-	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed	NA|286aa|up_8|CP022902.1_1848201_1849059_-	PRK13668, PRK13668, hypothetical protein; Provisional	NA|104aa|up_7|CP022902.1_1849158_1849470_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|359aa|up_6|CP022902.1_1849534_1850611_-	cd05656, M42_Frv, M42 Peptidase, endoglucanases	NA|105aa|up_5|CP022902.1_1850694_1851009_+	COG5584, COG5584, Predicted small secreted protein [Function unknown]	NA|281aa|up_4|CP022902.1_1851133_1851976_-	cd07728, YtnP-like_MBL-fold, Bacillus subtilis YtnP and related proteins; MBL-fold metallo hydrolase domain	NA|215aa|up_3|CP022902.1_1852445_1853090_-	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed	NA|264aa|up_2|CP022902.1_1853104_1853896_-	COG0510, ycfN, Thiamine kinase and related kinases [Coenzyme transport and metabolism]	NA|283aa|up_1|CP022902.1_1854446_1855295_-	TIGR01121, D-alanine_aminotransferase, D-amino acid aminotransferase	NA|470aa|up_0|CP022902.1_1855298_1856708_-	PRK07318, PRK07318, dipeptidase PepV; Reviewed	NA|141aa|down_0|CP022902.1_1857627_1858050_-	pfam12732, YtxH, YtxH-like protein	NA|232aa|down_1|CP022902.1_1858066_1858762_-	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]	NA|554aa|down_2|CP022902.1_1858758_1860420_-	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins	NA|423aa|down_3|CP022902.1_1860826_1862095_+	pfam03486, HI0933_like, HI0933-like protein	NA|2187aa|down_4|CP022902.1_1862211_1868772_-	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain	NA|104aa|down_5|CP022902.1_1869097_1869409_-	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein	NA|806aa|down_6|CP022902.1_1869430_1871848_-	PRK00390, leuS, leucyl-tRNA synthetase; Validated	NA|394aa|down_7|CP022902.1_1872135_1873317_-	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|318aa|down_8|CP022902.1_1873426_1874380_+	COG1242, COG1242, Predicted Fe-S oxidoreductase [General function prediction only]	NA|188aa|down_9|CP022902.1_1874376_1874940_+	pfam06962, rRNA_methylase, Putative rRNA methylase
GCA_003354665.1_ASM335466v1	CP022902	Staphylococcus aureus strain 165 chromosome, complete genome	10	2062340-2062418	8	CRISPRCasFinder	no	DEDDh	WYL,cas3,DEDDh,DinG,csa3	Unclear	TGTTGGGGCCCCGCCAACCTGCA	23	1	5	2062363-2062395|2062363-2062395|2062363-2062395|2062363-2062395|2062363-2062395	CP022902.1_821770-821802|CP022902.1_1362777-1362745|CP022902.1_1678565-1678597|CP022902.1_2664197-2664229|CP022902.1_1451307-1451339	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA|92aa|up_6|CP022902.1_2056534_2056810_+,NA|129aa|up_1|CP022902.1_2060795_2061182_-,NA|138aa|down_1|CP022902.1_2064101_2064515_-	NA|416aa|up_9|CP022902.1_2054457_2055705_-	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29)	NA|69aa|up_8|CP022902.1_2055716_2055923_-	COG4840, COG4840, Uncharacterized protein conserved in bacteria [Function unknown]	NA|155aa|up_7|CP022902.1_2056063_2056528_+	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|92aa|up_6|CP022902.1_2056534_2056810_+	NA	NA|406aa|up_5|CP022902.1_2057087_2058305_+	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair]	NA|210aa|up_4|CP022902.1_2058420_2059050_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|348aa|up_3|CP022902.1_2059039_2060083_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|234aa|up_2|CP022902.1_2060079_2060781_-	COG4758, COG4758, Predicted membrane protein [Function unknown]	NA|129aa|up_1|CP022902.1_2060795_2061182_-	NA	NA|253aa|up_0|CP022902.1_2061398_2062157_-	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|329aa|down_0|CP022902.1_2062684_2063671_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|138aa|down_1|CP022902.1_2064101_2064515_-	NA	NA|244aa|down_2|CP022902.1_2064739_2065471_-	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|438aa|down_3|CP022902.1_2065472_2066786_-	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|167aa|down_4|CP022902.1_2067077_2067578_+	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	DEDDh|185aa|down_5|CP022902.1_2067966_2068521_+	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|357aa|down_6|CP022902.1_2068588_2069659_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|177aa|down_7|CP022902.1_2069905_2070436_-	pfam11667, DUF3267, Putative zincin peptidase	NA|454aa|down_8|CP022902.1_2070605_2071967_-	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]	NA|316aa|down_9|CP022902.1_2072047_2072995_-	PRK13337, PRK13337, putative lipid kinase; Reviewed
GCA_003354665.1_ASM335466v1	CP022902	Staphylococcus aureus strain 165 chromosome, complete genome	11	2257154-2257234	9	CRISPRCasFinder	no	csa3	WYL,cas3,DEDDh,DinG,csa3	Type I-A	TTACAACTTTAGTTGTTAGGGGCT	24	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA|77aa|up_5|CP022902.1_2252029_2252260_-,NA|364aa|up_0|CP022902.1_2256048_2257140_+,NA	NA|237aa|up_9|CP022902.1_2247639_2248350_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|CP022902.1_2248470_2248914_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|CP022902.1_2249113_2249527_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|CP022902.1_2249984_2251358_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|CP022902.1_2252029_2252260_-	NA	NA|313aa|up_4|CP022902.1_2252290_2253229_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|CP022902.1_2253663_2254329_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|CP022902.1_2254480_2254801_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|CP022902.1_2254802_2255783_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|CP022902.1_2256048_2257140_+	NA	NA|68aa|down_0|CP022902.1_2258102_2258306_-	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|379aa|down_1|CP022902.1_2258364_2259501_-	pfam02037, SAP, SAP domain	NA|286aa|down_2|CP022902.1_2260585_2261443_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_3|CP022902.1_2261510_2262293_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_4|CP022902.1_2262524_2264330_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_5|CP022902.1_2265010_2266549_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_6|CP022902.1_2266583_2268716_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_7|CP022902.1_2268727_2269162_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_8|CP022902.1_2269161_2270268_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|2479aa|down_9|CP022902.1_2270586_2278023_-	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain
GCA_003354665.1_ASM335466v1	CP022902	Staphylococcus aureus strain 165 chromosome, complete genome	12	2381252-2381445	3	CRT	no		WYL,cas3,DEDDh,DinG,csa3	Orphan	TGTTGGGGCCCCGCCAACTTGCA	23	2	7	2381275-2381307|2381275-2381307|2381275-2381307|2381275-2381307|2381331-2381366|2381331-2381366|2381331-2381366	CP022902.1_821770-821802|CP022902.1_1362777-1362745|CP022902.1_1451307-1451339|CP022902.1_2664197-2664229|CP022902.1_1857013-1856978|CP022902.1_1678504-1678539|CP022902.1_2073107-2073142	NA	3	3	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA|55aa|up_8|CP022902.1_2371779_2371944_+,NA|106aa|up_7|CP022902.1_2372188_2372506_+,NA|84aa|up_4|CP022902.1_2377630_2377882_+,NA	NA|303aa|up_9|CP022902.1_2370738_2371647_-	COG0679, COG0679, Predicted permeases [General function prediction only]	NA|55aa|up_8|CP022902.1_2371779_2371944_+	NA	NA|106aa|up_7|CP022902.1_2372188_2372506_+	NA	NA|1056aa|up_6|CP022902.1_2372692_2375860_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_5|CP022902.1_2375976_2377242_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_4|CP022902.1_2377630_2377882_+	NA	NA|255aa|up_3|CP022902.1_2377873_2378638_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_2|CP022902.1_2378799_2379240_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_1|CP022902.1_2379232_2380444_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_0|CP022902.1_2380545_2380896_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|341aa|down_0|CP022902.1_2381586_2382609_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|CP022902.1_2382628_2383228_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|CP022902.1_2383234_2383468_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|CP022902.1_2383473_2383920_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|CP022902.1_2383933_2384419_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|CP022902.1_2384415_2385675_-	cd00887, MoeA, MoeA family	NA|169aa|down_6|CP022902.1_2386233_2386740_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_7|CP022902.1_2386770_2387775_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_8|CP022902.1_2387944_2388550_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|224aa|down_9|CP022902.1_2388550_2389222_-	COG4149, ModC, ABC-type molybdate transport system, permease component [Inorganic ion transport and metabolism]
