The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP022904	Staphylococcus aureus strain 629 chromosome, complete genome	2913334	866932	912644	2913334	portal,tail,holin,head	Staphylococcus_phage(75.36%)	72	NA	NA
AXJ63591.1|866932_867415_+	Phosphopantetheine adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	46.2	2.6e-28
AXJ63592.1|867476_868616_-	hypothetical protein	NA	NA	NA	NA	NA
AXJ63593.1|868742_869300_+	hypothetical protein	NA	NA	NA	NA	NA
AXJ63594.1|869379_869553_+	50S ribosomal protein L32	NA	NA	NA	NA	NA
AXJ63595.1|869669_871055_-	DNA-invertase hin	NA	I1W625	Staphylococcus_phage	100.0	2.5e-265
AXJ63596.1|871261_871942_-	PemK-like protein	NA	A0A2H4PQQ5	Staphylococcus_phage	100.0	5.1e-123
AXJ63597.1|871973_872438_-	hypothetical protein	NA	A0A0N9BAX8	Staphylococcus_phage	100.0	8.4e-85
AXJ63598.1|872450_872774_-	Antitoxin PezA	NA	A0A0H3U2V8	Staphylococcus_phage	100.0	2.0e-53
AXJ63599.1|872937_873186_+	Helix-turn-helix domain protein	NA	A0A2K9VBT6	Staphylococcus_phage	100.0	1.7e-39
AXJ63600.1|873198_873642_+	hypothetical protein	NA	W5R971	Staphylococcus_phage	99.3	4.4e-75
AXJ63601.1|873656_873800_+	hypothetical protein	NA	W5R8I6	Staphylococcus_phage	100.0	2.5e-16
AXJ63602.1|873789_873999_-	hypothetical protein	NA	W5R9J5	Staphylococcus_phage	100.0	1.2e-30
AXJ63603.1|874438_874624_+	helix-turn-helix protein	NA	S4SUN2	Staphylococcus_phage	100.0	1.7e-25
AXJ63604.1|874625_875378_+	Phage antirepressor protein KilAC domain protein	NA	A0A1X9H0A0	Staphylococcus_phage	99.6	4.3e-139
AXJ63605.1|875393_875570_+	hypothetical protein	NA	S4SVC9	Staphylococcus_phage	96.6	2.4e-24
AXJ63606.1|875544_875775_-	hypothetical protein	NA	C8CGY3	Staphylococcus_phage	100.0	2.3e-35
AXJ63607.1|875833_875962_+	hypothetical protein	NA	C8CGY4	Staphylococcus_phage	100.0	7.3e-15
AXJ63608.1|875954_876116_+	hypothetical protein	NA	C8CGY5	Staphylococcus_phage	100.0	2.5e-20
AXJ63609.1|876209_876470_+	hypothetical protein	NA	Q4ZDR5	Staphylococcus_virus	98.8	5.8e-43
AXJ63610.1|876479_876701_+	hypothetical protein	NA	A0A1X9H047	Staphylococcus_phage	100.0	1.2e-33
AXJ63611.1|876693_877317_+	hypothetical protein	NA	A0A2H4PQQ6	Staphylococcus_phage	100.0	1.4e-114
AXJ63612.1|877316_877742_+	Single-stranded DNA-binding protein ssb	NA	B7T0A5	Staphylococcus_virus	88.7	1.6e-58
AXJ63613.1|877752_878304_+	NUMOD4 motif protein	NA	A0A2H4PQR4	Staphylococcus_phage	100.0	1.6e-106
AXJ63614.1|878304_878979_+	hypothetical protein	NA	Q4ZCW9	Staphylococcus_virus	97.8	2.0e-127
AXJ63615.1|878971_879727_+	Replication initiation and membrane attachment	NA	C8CGZ1	Staphylococcus_phage	100.0	3.8e-143
AXJ63616.1|879726_880083_+	hypothetical protein	NA	M9NS37	Staphylococcus_phage	100.0	8.2e-64
AXJ63617.1|880079_881321_+	Replicative DNA helicase	NA	M9NSS7	Staphylococcus_phage	99.8	5.7e-229
AXJ63618.1|881317_881533_+	hypothetical protein	NA	Q4ZBU5	Staphylococcus_virus	100.0	4.8e-35
AXJ63619.1|881536_881758_+	hypothetical protein	NA	Q9G021	Staphylococcus_phage	100.0	1.3e-35
AXJ63620.1|881767_882193_+	DNA N-6-adenine-methyltransferase (Dam)	NA	C8CGZ6	Staphylococcus_phage	100.0	4.7e-82
AXJ63621.1|882189_882594_+	hypothetical protein	NA	A0A0H4ISQ5	Staphylococcus_phage	99.3	2.6e-66
AXJ63622.1|882598_882784_+	hypothetical protein	NA	A0A0N9BBI1	Staphylococcus_phage	100.0	1.9e-27
AXJ63623.1|882869_883124_+	hypothetical protein	NA	D2JGL1	Staphylococcus_phage	100.0	1.3e-42
AXJ63624.1|883129_883372_+	hypothetical protein	NA	D2JGL2	Staphylococcus_phage	100.0	1.7e-41
AXJ63625.1|883384_883786_+	hypothetical protein	NA	Q4ZAC1	Staphylococcus_virus	100.0	1.1e-69
AXJ63626.1|883782_884130_+	YopX protein	NA	D2JGL4	Staphylococcus_phage	100.0	5.9e-59
AXJ63627.1|884126_884435_+	hypothetical protein	NA	Q4ZD83	Staphylococcus_virus	100.0	6.2e-52
AXJ63628.1|884427_884664_+	hypothetical protein	NA	C8CH04	Staphylococcus_phage	100.0	1.1e-35
AXJ63629.1|884668_885211_+	Deoxyuridine 5'-triphosphate nucleotidohydrolase	NA	Q4ZD81	Staphylococcus_virus	100.0	1.5e-96
AXJ63630.1|885247_885484_+	hypothetical protein	NA	C8CH06	Staphylococcus_phage	98.7	2.4e-35
AXJ63631.1|885508_885745_+	hypothetical protein	NA	A0A0N7E0U3	Staphylococcus_phage	97.4	1.8e-35
AXJ63632.1|885734_885911_+	Transcriptional activator RinB	NA	R4IFL3	Staphylococcus_phage	98.2	1.1e-21
AXJ63633.1|885911_886058_+	hypothetical protein	NA	Q4ZBJ8	Staphylococcus_phage	100.0	7.5e-16
AXJ63634.1|886081_886504_+	hypothetical protein	NA	A0A0F6N3E5	Staphylococcus_phage	100.0	1.2e-74
AXJ63635.1|886832_887327_+	Terminase small subunit	NA	R4IH30	Staphylococcus_phage	99.4	1.4e-74
AXJ63636.1|887319_888528_+	Terminase-like family protein	NA	R4IG95	Staphylococcus_phage	100.0	6.1e-236
AXJ63637.1|888541_889960_+|portal	Phage portal protein, SPP1 Gp6-like	portal	R4IFL5	Staphylococcus_phage	99.4	4.3e-273
AXJ63638.1|889916_890879_+	NAD(+)--arginine ADP-ribosyltransferase EFV	NA	Q4ZB44	Staphylococcus_virus	99.7	4.6e-178
AXJ63639.1|890976_891501_+	Phage minor structural protein GP20	NA	Q4ZB42	Staphylococcus_virus	100.0	2.9e-65
AXJ63640.1|891512_892472_+	hypothetical protein	NA	Q4ZB40	Staphylococcus_virus	100.0	1.9e-179
AXJ63641.1|892488_892815_+	hypothetical protein	NA	Q4ZB39	Staphylococcus_virus	99.1	1.0e-52
AXJ63642.1|892814_893129_+|head,tail	Phage gp6-like head-tail connector protein	head,tail	Q4ZB38	Staphylococcus_virus	100.0	2.6e-53
AXJ63643.1|893121_893457_+	hypothetical protein	NA	A7YGU9	Staphylococcus_virus	98.2	8.8e-60
AXJ63644.1|893443_893734_+	hypothetical protein	NA	A0A0E3XCY8	Staphylococcus_phage	98.8	3.8e-43
AXJ63645.1|893826_894510_+	hypothetical protein	NA	W5RA17	Staphylococcus_phage	46.2	1.2e-42
AXJ63646.1|894872_895298_+	hypothetical protein	NA	A0A0E3XBP2	Staphylococcus_phage	100.0	1.2e-74
AXJ63647.1|895298_895856_+	hypothetical protein	NA	Q4ZBQ8	Staphylococcus_phage	100.0	8.2e-103
AXJ63648.1|895922_896429_+	Phage protein	NA	Q4ZBQ7	Staphylococcus_phage	100.0	2.7e-92
AXJ63649.1|896473_896758_+	hypothetical protein	NA	A0A0N7E0V9	Staphylococcus_phage	100.0	8.8e-45
AXJ63650.1|896761_899647_+	hypothetical protein	NA	A0A2H4JGV1	uncultured_Caudovirales_phage	95.3	0.0e+00
AXJ63651.1|899661_900603_+|tail	Phage tail protein	tail	A0A2H4JFG3	uncultured_Caudovirales_phage	99.0	2.8e-180
AXJ63652.1|900613_902500_+|tail	Prophage endopeptidase tail	tail	A0A0H3U2R3	Staphylococcus_phage	100.0	0.0e+00
AXJ63653.1|902512_904411_+	hypothetical protein	NA	A0A0H3U448	Staphylococcus_phage	98.4	0.0e+00
AXJ63654.1|904410_906234_+	hypothetical protein	NA	M9NUJ5	Staphylococcus_phage	97.7	1.8e-292
AXJ63655.1|906233_906611_+	hypothetical protein	NA	Q8LTH7	Staphylococcus_phage	100.0	7.3e-55
AXJ63656.1|906611_906788_+	hypothetical protein	NA	Q8LTH6	Staphylococcus_phage	100.0	6.1e-28
AXJ63657.1|906828_907128_+	hypothetical protein	NA	Q4ZBP8	Staphylococcus_phage	100.0	1.3e-46
AXJ63658.1|907264_909139_+	Bifunctional autolysin precursor	NA	Q4ZBP7	Staphylococcus_phage	100.0	0.0e+00
AXJ63659.1|909151_910324_+	hypothetical protein	NA	A0A0N9BAZ1	Staphylococcus_phage	98.5	4.3e-194
AXJ63660.1|910329_910725_+	hypothetical protein	NA	Q4ZBP5	Staphylococcus_phage	100.0	2.7e-68
AXJ63661.1|910780_911218_+|holin	Bacteriophage holin	holin	S4SVG2	Staphylococcus_phage	99.3	4.1e-73
AXJ63662.1|911198_912644_+	putative cell wall hydrolase LytN precursor	NA	Q4ZB16	Staphylococcus_virus	100.0	4.8e-296
>prophage 2
CP022904	Staphylococcus aureus strain 629 chromosome, complete genome	2913334	1481158	1490201	2913334	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
AXJ64168.1|1481158_1481677_-	Adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
AXJ64169.1|1481698_1483972_-	Single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.3	8.1e-64
AXJ64170.1|1484174_1486454_-	bifunctional preprotein translocase subunit SecD/SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
AXJ64171.1|1486728_1486989_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
AXJ64172.1|1487007_1488147_-|tRNA	Queuine tRNA-ribosyltransferase	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
AXJ64173.1|1488169_1489195_-|tRNA	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
AXJ64174.1|1489196_1490201_-	Holliday junction ATP-dependent DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 3
CP022904	Staphylococcus aureus strain 629 chromosome, complete genome	2913334	1610916	1685899	2913334	tRNA,protease	Staphylococcus_phage(94.23%)	68	NA	NA
AXJ64275.1|1610916_1611561_-|tRNA	tRNA (guanine-N(7)-)-methyltransferase	tRNA	NA	NA	NA	NA
AXJ64276.1|1611575_1612367_-	Phosphotransferase enzyme family protein	NA	NA	NA	NA	NA
AXJ64277.1|1612916_1613765_-	D-alanine aminotransferase	NA	NA	NA	NA	NA
AXJ64278.1|1613768_1615178_-	Putative dipeptidase	NA	NA	NA	NA	NA
AXJ64279.1|1615621_1616044_-	hypothetical protein	NA	NA	NA	NA	NA
AXJ64280.1|1616060_1616756_-	Ribosomal small subunit pseudouridine synthase A	NA	NA	NA	NA	NA
AXJ64281.1|1616752_1618414_-	putative cell division protein YtgP	NA	NA	NA	NA	NA
AXJ64282.1|1618820_1620089_+	tricarballylate dehydrogenase	NA	A0A2H4PQX1	Staphylococcus_phage	99.1	9.1e-57
AXJ64283.1|1620205_1626766_-	Extracellular matrix-binding protein ebh precursor	NA	A0A2H4PQU6	Staphylococcus_phage	98.2	4.0e-305
AXJ64284.1|1627091_1627403_-	molybdopterin biosynthesis-like protein MoeZ	NA	A0A2H4PQR9	Staphylococcus_phage	99.0	4.8e-52
AXJ64285.1|1627424_1629842_-|tRNA	Leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.5	0.0e+00
AXJ64286.1|1630129_1631311_-	Multidrug resistance protein MdtH	NA	A0A2H4PQR6	Staphylococcus_phage	99.7	7.3e-218
AXJ64287.1|1631420_1632374_+	coproporphyrinogen III oxidase	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
AXJ64288.1|1632370_1632934_+	16S rRNA m(4)C1402 methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
AXJ64289.1|1633056_1633458_-	HTH-type transcriptional regulator rot	NA	NA	NA	NA	NA
AXJ64290.1|1634029_1634857_-	Phospholipase YtpA	NA	NA	NA	NA	NA
AXJ64291.1|1635090_1636092_+	Proline dehydrogenase 1	NA	A0A2H4PQT6	Staphylococcus_phage	99.4	2.6e-184
AXJ64292.1|1636213_1636678_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	100.0	4.5e-70
AXJ64293.1|1636690_1637872_-	Riboflavin biosynthesis protein RibBA	NA	A0A2H4PQS2	Staphylococcus_phage	99.2	2.1e-225
AXJ64294.1|1637882_1638515_-	Riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	98.6	5.5e-111
AXJ64295.1|1638521_1639565_-	Riboflavin biosynthesis protein RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.8	5.3e-196
AXJ64296.1|1640045_1641548_-	hypothetical protein	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	1.9e-29
AXJ64297.1|1642070_1642385_+	Transcriptional repressor SdpR	NA	A0A2H4PQT4	Staphylococcus_phage	98.1	9.8e-53
AXJ64298.1|1642384_1643677_+	Arsenical pump membrane protein	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	5.0e-228
AXJ64299.1|1643763_1644618_-	Bifunctional autolysin precursor	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
AXJ64300.1|1644893_1645118_-	hypothetical protein	NA	NA	NA	NA	NA
AXJ64301.1|1645316_1645787_+	RNA polymerase sigma factor SigS	NA	A0A2H4PQT5	Staphylococcus_phage	98.1	8.8e-82
AXJ64302.1|1645899_1646343_+	hypothetical protein	NA	NA	NA	NA	NA
AXJ64303.1|1646329_1646773_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	98.6	2.4e-57
AXJ64304.1|1647068_1647704_+|protease	CAAX amino terminal protease self- immunity	protease	NA	NA	NA	NA
AXJ64305.1|1648143_1648857_-	Transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
AXJ64306.1|1649116_1649419_+	hypothetical protein	NA	NA	NA	NA	NA
AXJ64307.1|1649674_1650040_+	Putative fluoride ion transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
AXJ64308.1|1650036_1650390_+	Putative fluoride ion transporter CrcB	NA	A0A2H4PQQ7	Staphylococcus_phage	88.0	6.5e-13
AXJ64309.1|1652386_1653220_-	Glyoxal reductase	NA	A0A2H4PQR8	Staphylococcus_phage	99.3	7.8e-158
AXJ64310.1|1653431_1654340_-	hypothetical protein	NA	A0A2H4PQQ8	Staphylococcus_phage	100.0	3.4e-138
AXJ64311.1|1654461_1655658_-	S-adenosylmethionine synthase	NA	A0A2H4PQS6	Staphylococcus_phage	99.5	4.3e-218
AXJ64312.1|1656029_1657622_+	Phosphoenolpyruvate carboxykinase [ATP]	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
AXJ64313.1|1657999_1658770_-	Prolyl oligopeptidase family protein	NA	A0A2H4PQM6	Staphylococcus_phage	98.8	1.5e-142
AXJ64314.1|1658750_1659230_-	Putative 8-oxo-dGTP diphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	99.4	3.0e-85
AXJ64315.1|1659289_1659547_+	Putative membrane protein insertion efficiency factor	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
AXJ64316.1|1659543_1660545_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.3	5.3e-185
AXJ64317.1|1660549_1662028_-	2-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.6	2.8e-283
AXJ64318.1|1662186_1662669_-	hypothetical protein	NA	A0A2H4PQN7	Staphylococcus_phage	99.3	3.8e-80
AXJ64319.1|1662980_1663595_+	SPBc2 prophage-derived endonuclease YokF precursor	NA	A0A2H4PQM8	Staphylococcus_phage	93.1	1.1e-42
AXJ64320.1|1663675_1664671_+	Telomeric repeat-binding factor 2	NA	A0A2H4PQN2	Staphylococcus_phage	97.9	2.6e-67
AXJ64321.1|1664745_1665372_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	79.8	3.1e-74
AXJ64322.1|1665412_1665754_+	hypothetical protein	NA	A0A2H4PQN6	Staphylococcus_phage	94.7	1.1e-54
AXJ64323.1|1665854_1666427_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	93.1	2.3e-23
AXJ64324.1|1666624_1667194_-	Integrase core domain protein	NA	A0A2I7SC85	Paenibacillus_phage	56.8	1.3e-55
AXJ64325.1|1667544_1667637_-	hypothetical protein	NA	A0A2H4PQU1	Staphylococcus_phage	87.5	3.7e-05
AXJ64326.1|1668224_1668725_-	hypothetical protein	NA	NA	NA	NA	NA
AXJ64327.1|1669176_1670406_-	EcoKI restriction-modification system protein HsdS	NA	A0A2H4PQP5	Staphylococcus_phage	64.7	4.0e-134
AXJ64328.1|1670398_1671955_-	putative type I restriction enzymeP M protein	NA	A0A2H4PQP4	Staphylococcus_phage	100.0	1.6e-289
AXJ64329.1|1672315_1673035_-|protease	Serine protease SplF precursor	protease	A0A2H4PQP1	Staphylococcus_phage	99.6	1.9e-131
AXJ64330.1|1673192_1673912_-|protease	Serine protease SplD precursor	protease	A0A2H4PQP9	Staphylococcus_phage	99.6	4.6e-130
AXJ64331.1|1674032_1674752_-|protease	Serine protease SplC precursor	protease	A0A2H4PQP7	Staphylococcus_phage	98.3	8.6e-129
AXJ64332.1|1674809_1675532_-|protease	Serine protease SplB precursor	protease	A0A2H4PQN0	Staphylococcus_phage	98.3	3.5e-130
AXJ64333.1|1675656_1676364_-|protease	Serine protease SplA precursor	protease	A0A2H4PQN3	Staphylococcus_phage	96.6	5.1e-126
AXJ64334.1|1677337_1678510_-	Transposase, Mutator family	NA	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
AXJ64335.1|1678659_1679241_+	hypothetical protein	NA	A0A2H4PQH6	Staphylococcus_phage	64.8	9.6e-54
AXJ64336.1|1679713_1679932_-	hypothetical protein	NA	A0A2H4PQH0	Staphylococcus_phage	80.6	2.0e-25
AXJ64337.1|1680187_1680661_+	hypothetical protein	NA	NA	NA	NA	NA
AXJ64338.1|1680665_1681457_+	hypothetical protein	NA	NA	NA	NA	NA
AXJ64339.1|1681826_1682810_-	Leucotoxin LukDv precursor	NA	A0A2H4PQH7	Staphylococcus_phage	99.4	1.8e-185
AXJ64340.1|1682811_1683747_-	Leucotoxin LukEv precursor	NA	A0A2H4PQI5	Staphylococcus_phage	100.0	1.4e-174
AXJ64341.1|1684642_1684741_+	hypothetical protein	NA	A0A2H4PQI6	Staphylococcus_phage	100.0	1.4e-10
AXJ64342.1|1685110_1685899_+	hypothetical protein	NA	A0A2H4PQI0	Staphylococcus_phage	98.5	3.6e-144
>prophage 4
CP022904	Staphylococcus aureus strain 629 chromosome, complete genome	2913334	1819116	1866506	2913334	capsid,tail,holin,protease,portal	Staphylococcus_phage(98.51%)	67	NA	NA
AXJ64460.1|1819116_1819317_+	Phospholipase C precursor	NA	A0A1P8L6A7	Staphylococcus_phage	100.0	3.4e-27
AXJ64461.1|1820491_1820842_-	Complement inhibitor precursor	NA	A0A1P8L6B0	Staphylococcus_phage	100.0	7.5e-54
AXJ64462.1|1821525_1821975_+	Chemotaxis inhibitory protein precursor	NA	A0A1P8L6A8	Staphylococcus_phage	100.0	1.1e-78
AXJ64463.1|1822069_1822366_-	Bacterial SH3 domain protein	NA	A0A1P8L6B4	Staphylococcus_phage	100.0	1.3e-51
AXJ64464.1|1823054_1823546_-	Staphylokinase precursor	NA	A0A1X9H028	Staphylococcus_phage	100.0	9.5e-87
AXJ64465.1|1823736_1824492_-	putative cell wall hydrolase LytN precursor	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
AXJ64466.1|1824503_1824758_-|holin	Bacteriophage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
AXJ64467.1|1825295_1825526_-	hypothetical protein	NA	D2JLG2	Staphylococcus_phage	100.0	1.2e-31
AXJ64468.1|1825649_1825937_-	hypothetical protein	NA	D2JLG1	Staphylococcus_phage	100.0	1.3e-43
AXJ64469.1|1825983_1826136_-	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
AXJ64470.1|1826125_1829911_-	hypothetical protein	NA	A0A1P8L6B8	Staphylococcus_phage	99.8	0.0e+00
AXJ64471.1|1829926_1831411_-|tail	Phage tail protein	tail	A0A068A242	Staphylococcus_phage	98.8	4.6e-294
AXJ64472.1|1831407_1835919_-	Murein DD-endopeptidase MepM	NA	A0EX03	Staphylococcus_phage	88.0	0.0e+00
AXJ64473.1|1835975_1836113_-	hypothetical protein	NA	A0A2I6PDX7	Staphylococcus_phage	100.0	3.4e-18
AXJ64474.1|1836163_1836514_-	hypothetical protein	NA	G4KNQ8	Staphylococcus_phage	100.0	7.8e-59
AXJ64475.1|1836830_1837472_-	hypothetical protein	NA	A0A1W6JPP5	Staphylococcus_phage	100.0	1.1e-119
AXJ64476.1|1837472_1837880_-	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	100.0	7.1e-72
AXJ64477.1|1837876_1838281_-	hypothetical protein	NA	A0A1W6JPJ1	Staphylococcus_phage	100.0	2.5e-69
AXJ64478.1|1838277_1838640_-	hypothetical protein	NA	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
AXJ64479.1|1838623_1838920_-	hypothetical protein	NA	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.6e-47
AXJ64480.1|1838920_1839181_-	hypothetical protein	NA	A0A0H3U504	Staphylococcus_phage	100.0	6.4e-42
AXJ64481.1|1839200_1840421_-|capsid	Phage capsid family protein	capsid	A0A075LYD8	Staphylococcus_phage	99.5	8.6e-230
AXJ64482.1|1840368_1841106_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A1W6JPK0	Staphylococcus_phage	100.0	1.8e-129
AXJ64483.1|1841089_1842253_-|portal	Phage portal protein	portal	A0A1W6JPQ9	Staphylococcus_phage	100.0	1.8e-216
AXJ64484.1|1842268_1843930_-	Phage Terminase	NA	Q8LTH3	Staphylococcus_phage	100.0	0.0e+00
AXJ64485.1|1843926_1844271_-	hypothetical protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
AXJ64486.1|1844401_1844701_-	HNH endonuclease	NA	A0EWY8	Staphylococcus_phage	100.0	4.6e-52
AXJ64487.1|1844932_1845349_-	hypothetical protein	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
AXJ64488.1|1845376_1845577_-	hypothetical protein	NA	D2JLD9	Staphylococcus_phage	98.5	5.3e-28
AXJ64489.1|1845576_1845726_-	Transcriptional activator RinB	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
AXJ64490.1|1845722_1845929_-	hypothetical protein	NA	A0A2I6PEA2	Staphylococcus_phage	94.1	1.1e-17
AXJ64491.1|1845925_1846171_-	hypothetical protein	NA	A0A2I6PDW7	Staphylococcus_phage	97.5	4.2e-35
AXJ64492.1|1846207_1846744_-	dUTPase	NA	Q9MBR0	Staphylococcus_prophage	100.0	1.6e-95
AXJ64493.1|1846740_1846989_-	hypothetical protein	NA	Q8SDV5	Staphylococcus_phage	95.1	4.5e-37
AXJ64494.1|1847000_1847243_-	hypothetical protein	NA	A0A2H4PQJ3	Staphylococcus_phage	98.8	1.2e-39
AXJ64495.1|1847245_1847503_-	hypothetical protein	NA	A0A1X9H067	Staphylococcus_phage	98.8	6.3e-42
AXJ64496.1|1847502_1847874_-	PVL ORF-50-like family protein	NA	A0A2I6PDG3	Staphylococcus_phage	91.1	1.4e-50
AXJ64497.1|1847886_1848291_-	Endodeoxyribonuclease RusA	NA	A0A075M042	Staphylococcus_phage	99.3	9.3e-72
AXJ64498.1|1848299_1848518_-	hypothetical protein	NA	A0A1P8L6E4	Staphylococcus_phage	100.0	1.4e-37
AXJ64499.1|1848524_1849418_-	Replication initiation and membrane attachment	NA	A0A1P8L6F0	Staphylococcus_phage	100.0	3.2e-141
AXJ64500.1|1849447_1849918_-	Single-stranded DNA-binding protein ssb	NA	A0A1P8L6D9	Staphylococcus_phage	100.0	5.7e-81
AXJ64501.1|1849918_1850404_-	Beta-lactamase superfamily domain protein	NA	S4SWA4	Staphylococcus_phage	99.4	1.2e-86
AXJ64502.1|1850616_1851537_-	recombination and repair protein RecT	NA	A0A2I6PDH5	Staphylococcus_phage	99.7	8.6e-166
AXJ64503.1|1851538_1853482_-	hypothetical protein	NA	S4V9K6	Staphylococcus_phage	100.0	0.0e+00
AXJ64504.1|1853490_1853754_-	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
AXJ64505.1|1853762_1854023_-	hypothetical protein	NA	A0A1P8L6F5	Staphylococcus_phage	100.0	5.2e-44
AXJ64506.1|1854027_1854330_-	hypothetical protein	NA	A0A1P8L6F8	Staphylococcus_phage	100.0	7.0e-48
AXJ64507.1|1854424_1854586_-	hypothetical protein	NA	A0A1P8L6G0	Staphylococcus_phage	100.0	1.9e-20
AXJ64508.1|1854582_1854906_-	hypothetical protein	NA	A0A075LYF5	Staphylococcus_phage	100.0	3.0e-57
AXJ64509.1|1854960_1855341_+	hypothetical protein	NA	Q9T1Z5	Staphylococcus_phage	100.0	1.2e-68
AXJ64510.1|1855327_1855525_-	hypothetical protein	NA	O80075	Staphylococcus_phage	100.0	2.5e-30
AXJ64511.1|1855540_1856290_-	Phage antirepressor protein KilAC domain protein	NA	A0A1W6JPN2	Staphylococcus_phage	99.6	2.0e-136
AXJ64512.1|1856346_1856556_+	hypothetical protein	NA	A0A2I6PDR8	Staphylococcus_phage	100.0	9.1e-31
AXJ64513.1|1856548_1856689_-	hypothetical protein	NA	A0A2I6PDT8	Staphylococcus_phage	100.0	1.9e-16
AXJ64514.1|1856703_1857150_-	hypothetical protein	NA	A0A1W6JPI3	Staphylococcus_phage	100.0	1.9e-78
AXJ64515.1|1857162_1857405_-	hypothetical protein	NA	A0A1X9H035	Staphylococcus_phage	100.0	1.6e-39
AXJ64516.1|1857568_1858285_+	putative HTH-type transcriptional regulator	NA	A0A1X9H038	Staphylococcus_phage	100.0	5.4e-131
AXJ64517.1|1858296_1859151_+	HIRAN domain protein	NA	A0A1X9H037	Staphylococcus_phage	100.0	7.3e-151
AXJ64518.1|1859224_1859371_+	hypothetical protein	NA	A0A1X9H032	Staphylococcus_phage	100.0	3.3e-19
AXJ64519.1|1859367_1859553_+	hypothetical protein	NA	U5U7D6	Staphylococcus_phage	100.0	2.3e-25
AXJ64520.1|1859622_1859790_+	hypothetical protein	NA	U5U774	Staphylococcus_phage	100.0	1.7e-24
AXJ64521.1|1859929_1860634_+	PemK-like protein	NA	U5U4R0	Staphylococcus_phage	100.0	4.6e-127
AXJ64522.1|1860827_1861865_+	Tyrosine recombinase XerC	NA	A0A1X9H022	Staphylococcus_phage	100.0	2.6e-179
AXJ64523.1|1861921_1862746_+	Phospholipase C precursor	NA	A0A1P8L6H7	Staphylococcus_phage	100.0	6.8e-162
AXJ64524.1|1862983_1864000_-	putative leukocidin-like protein 1 precursor	NA	A0A1X9IGW5	Staphylococcus_phage	30.2	6.7e-26
AXJ64525.1|1864021_1865077_-	putative leukocidin-like protein 2 precursor	NA	A0A1X9IGW5	Staphylococcus_phage	34.3	2.8e-35
AXJ64526.1|1865333_1866506_-	Transposase, Mutator family	NA	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
>prophage 5
CP022904	Staphylococcus aureus strain 629 chromosome, complete genome	2913334	1983018	1999980	2913334	integrase	Staphylococcus_phage(81.25%)	25	1991196:1991211	1998594:1998609
AXJ64635.1|1983018_1984191_-	Transposase, Mutator family	NA	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
AXJ64636.1|1984276_1984627_-	hypothetical protein	NA	NA	NA	NA	NA
AXJ64637.1|1984932_1985373_-	preprotein translocase subunit SecB	NA	NA	NA	NA	NA
AXJ64638.1|1985372_1985669_-	hypothetical protein	NA	NA	NA	NA	NA
AXJ64639.1|1985689_1986262_-	hypothetical protein	NA	NA	NA	NA	NA
AXJ64640.1|1986476_1987046_-	Terminase small subunit	NA	Q4ZE85	Staphylococcus_phage	98.4	3.5e-101
AXJ64641.1|1987042_1987384_-	hypothetical protein	NA	A0A1W6JQM3	Staphylococcus_phage	100.0	1.7e-58
AXJ64642.1|1987386_1987914_-	hypothetical protein	NA	A0A1W6JQH7	Staphylococcus_phage	96.6	1.7e-86
AXJ64643.1|1987964_1988183_-	hypothetical protein	NA	NA	NA	NA	NA
AXJ64644.1|1988200_1988779_-	hypothetical protein	NA	A0A2H4JBG0	uncultured_Caudovirales_phage	38.9	4.8e-29
AXJ64645.1|1988790_1989132_-	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	98.2	4.2e-57
AXJ64646.1|1989581_1990223_-	hypothetical protein	NA	Q4ZE67	Staphylococcus_phage	92.5	2.1e-110
AXJ64647.1|1990224_1990497_-	hypothetical protein	NA	Q4ZE68	Staphylococcus_phage	100.0	3.2e-44
AXJ64648.1|1990483_1991287_-	hypothetical protein	NA	Q4ZE69	Staphylococcus_phage	97.0	3.1e-151
1991196:1991211	attL	GCAAATGAAACAGTTG	NA	NA	NA	NA
AXJ64649.1|1991462_1993079_-	hypothetical protein	NA	A0A1W6JPF4	Staphylococcus_phage	78.1	3.0e-246
AXJ64650.1|1993123_1993447_-	hypothetical protein	NA	A0A1W6JQH0	Staphylococcus_phage	93.3	2.6e-40
AXJ64651.1|1993447_1993831_-	hypothetical protein	NA	A0A1W6JQI7	Staphylococcus_phage	96.9	3.3e-63
AXJ64652.1|1993832_1994036_-	hypothetical protein	NA	A0A1W6JQF4	Staphylococcus_phage	98.5	2.0e-30
AXJ64653.1|1994002_1994176_-	hypothetical protein	NA	NA	NA	NA	NA
AXJ64654.1|1994172_1994400_-	helix-turn-helix protein	NA	NA	NA	NA	NA
AXJ64655.1|1994435_1994642_-	hypothetical protein	NA	NA	NA	NA	NA
AXJ64656.1|1994862_1995447_+	hypothetical protein	NA	NA	NA	NA	NA
AXJ64657.1|1995452_1996559_+|integrase	Putative prophage phiRv2 integrase	integrase	H0UST3	Bacillus_phage	44.2	5.9e-76
AXJ64658.1|1997121_1997586_-	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	98.7	1.6e-80
AXJ64659.1|1997607_1999980_-	Ribonuclease R	NA	Q0GXV6	Lactococcus_phage	38.8	4.3e-92
1998594:1998609	attR	CAACTGTTTCATTTGC	NA	NA	NA	NA
>prophage 6
CP022904	Staphylococcus aureus strain 629 chromosome, complete genome	2913334	2050832	2064495	2913334		uncultured_Caudovirales_phage(50.0%)	11	NA	NA
AXJ64704.1|2050832_2051594_-	putative siderophore transport system ATP-binding protein YusV	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	6.5e-18
AXJ64705.1|2051590_2052547_-	Iron-uptake system permease protein FeuC	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
AXJ64706.1|2052533_2053547_-	Fe(3+) dicitrate transport system permease protein FecD	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.0	2.2e-138
AXJ64707.1|2053879_2054851_-	Ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
AXJ64708.1|2054968_2057074_-	Ribonucleoside-diphosphate reductase subunit alpha 2	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
AXJ64709.1|2057036_2057435_-	ribonucleotide reductase stimulatory protein	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
AXJ64710.1|2058235_2059102_+	EamA-like transporter family protein	NA	NA	NA	NA	NA
AXJ64711.1|2059121_2059622_+	NADPH-dependent 7-cyano-7-deazaguanine reductase	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
AXJ64712.1|2059962_2061468_+	Di-/tripeptide transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
AXJ64713.1|2061594_2063199_-	Transposase DDE domain protein	NA	A0ZS58	Staphylococcus_virus	44.4	1.1e-128
AXJ64714.1|2063577_2064495_+	Putative lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	2.1e-07
>prophage 7
CP022904	Staphylococcus aureus strain 629 chromosome, complete genome	2913334	2079284	2087105	2913334		Pandoravirus(16.67%)	10	NA	NA
AXJ64725.1|2079284_2080436_-	Aminodeoxychorismate synthase component 1	NA	S4VNU7	Pandoravirus	35.7	6.0e-23
AXJ64726.1|2080419_2081013_-	Anthranilate synthase component 2	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
AXJ64727.1|2081363_2082032_+	7-cyano-7-deazaguanine synthase	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
AXJ64728.1|2082033_2082453_+	6-carboxy-5,6,7,8-tetrahydropterin synthase	NA	S4U060	uncultured_phage	28.7	6.3e-07
AXJ64729.1|2082456_2083170_+	7-carboxy-7-deazaguanine synthase	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
AXJ64730.1|2083268_2083853_+	hypothetical protein	NA	NA	NA	NA	NA
AXJ64731.1|2084132_2084573_+	Electron transfer DM13	NA	NA	NA	NA	NA
AXJ64732.1|2084915_2085389_+	DoxX	NA	NA	NA	NA	NA
AXJ64733.1|2085363_2086050_+	Response regulator SaeR	NA	NA	NA	NA	NA
AXJ64734.1|2086049_2087105_+	Histidine protein kinase SaeS	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
>prophage 8
CP022904	Staphylococcus aureus strain 629 chromosome, complete genome	2913334	2436880	2454134	2913334		Staphylococcus_phage(76.19%)	27	NA	NA
AXJ65046.1|2436880_2438053_-	Transposase, Mutator family	NA	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
AXJ65047.1|2438366_2438879_-	hypothetical protein	NA	Q4ZE83	Staphylococcus_phage	100.0	1.4e-69
AXJ65048.1|2438996_2439398_-	hypothetical protein	NA	A0A2H4J577	uncultured_Caudovirales_phage	59.1	5.1e-22
AXJ65049.1|2439575_2440544_-	Abi-like protein	NA	A0A0H4U080	Erysipelothrix_phage	27.3	2.7e-24
AXJ65050.1|2440820_2441390_-	Terminase small subunit	NA	Q4ZE85	Staphylococcus_phage	98.4	4.6e-101
AXJ65051.1|2441386_2441728_-	hypothetical protein	NA	Q4ZE86	Staphylococcus_phage	98.2	1.1e-57
AXJ65052.1|2441730_2442258_-	hypothetical protein	NA	Q4ZE87	Staphylococcus_phage	99.4	2.0e-90
AXJ65053.1|2442310_2442964_-	hypothetical protein	NA	Q4ZE82	Staphylococcus_phage	99.5	7.6e-116
AXJ65054.1|2442994_2443339_-	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	91.7	1.3e-50
AXJ65055.1|2444046_2444688_-	hypothetical protein	NA	Q4ZE67	Staphylococcus_phage	93.4	2.5e-111
AXJ65056.1|2444689_2444953_-	hypothetical protein	NA	NA	NA	NA	NA
AXJ65057.1|2444954_2445311_-	hypothetical protein	NA	A0A2H4JBD4	uncultured_Caudovirales_phage	78.8	3.0e-50
AXJ65058.1|2445553_2446924_-	hypothetical protein	NA	A0A2H4JBE3	uncultured_Caudovirales_phage	95.0	2.4e-257
AXJ65059.1|2446935_2447805_-	hypothetical protein	NA	A0A2H4JEH3	uncultured_Caudovirales_phage	76.1	1.0e-131
AXJ65060.1|2447869_2448196_-	hypothetical protein	NA	Q4ZE75	Staphylococcus_phage	96.3	3.5e-53
AXJ65061.1|2448196_2448580_-	hypothetical protein	NA	A0A1W6JQI7	Staphylococcus_phage	96.1	4.8e-62
AXJ65062.1|2448581_2448785_-	hypothetical protein	NA	A0A1W6JQF4	Staphylococcus_phage	98.5	2.0e-30
AXJ65063.1|2448751_2448925_-	hypothetical protein	NA	NA	NA	NA	NA
AXJ65064.1|2448936_2449209_-	hypothetical protein	NA	Q4ZE77	Staphylococcus_phage	97.8	5.0e-45
AXJ65065.1|2449209_2449374_-	Helix-turn-helix domain protein	NA	NA	NA	NA	NA
AXJ65066.1|2449522_2450146_+	Helix-turn-helix domain protein	NA	NA	NA	NA	NA
AXJ65067.1|2450306_2451521_+	Tyrosine recombinase XerD	NA	Q4ZE80	Staphylococcus_phage	97.3	3.3e-221
AXJ65068.1|2451633_2452353_+	PemK-like protein	NA	Q4ZE81	Staphylococcus_phage	29.8	3.7e-23
AXJ65069.1|2452584_2452827_-	30S ribosomal protein S18	NA	NA	NA	NA	NA
AXJ65070.1|2452878_2453382_-	Single-stranded DNA-binding protein ssb	NA	A0A1W6JPL9	Staphylococcus_phage	74.7	1.2e-60
AXJ65071.1|2453402_2453699_-	30S ribosomal protein S6	NA	NA	NA	NA	NA
AXJ65072.1|2453942_2454134_+	hypothetical protein	NA	U3PCX8	Staphylococcus_phage	80.0	1.1e-22
>prophage 9
CP022904	Staphylococcus aureus strain 629 chromosome, complete genome	2913334	2633225	2641841	2913334	holin	Staphylococcus_phage(66.67%)	9	NA	NA
AXJ65229.1|2633225_2634818_+	Glutathione import ATP-binding protein GsiA	NA	G9BWD6	Planktothrix_phage	33.6	4.1e-22
AXJ65230.1|2635139_2636312_-	Transposase, Mutator family	NA	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
AXJ65231.1|2636659_2636857_-	anaerobic benzoate catabolism transcriptional regulator	NA	A0A1V0E021	Clostridioides_phage	43.3	2.1e-05
AXJ65232.1|2636859_2637036_-	hypothetical protein	NA	NA	NA	NA	NA
AXJ65233.1|2637022_2637745_-|holin	Choline transport ATP-binding protein OpuBA	holin	A0A2H4PQG7	Staphylococcus_phage	34.8	4.1e-22
AXJ65234.1|2637756_2638200_-	hypothetical protein	NA	NA	NA	NA	NA
AXJ65235.1|2638258_2639320_-	hypothetical protein	NA	NA	NA	NA	NA
AXJ65236.1|2639338_2640511_+	Transposase, Mutator family	NA	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
AXJ65237.1|2640668_2641841_+	Transposase, Mutator family	NA	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
>prophage 10
CP022904	Staphylococcus aureus strain 629 chromosome, complete genome	2913334	2750204	2760558	2913334		Streptococcus_phage(80.0%)	11	NA	NA
AXJ65334.1|2750204_2751809_+	Transposase DDE domain protein	NA	A0ZS58	Staphylococcus_virus	44.4	1.1e-128
AXJ65335.1|2751935_2752181_+	hypothetical protein	NA	NA	NA	NA	NA
AXJ65336.1|2752283_2753153_+	Nucleotidyltransferase domain protein	NA	A0A1X9I6C9	Streptococcus_phage	95.8	4.3e-159
AXJ65337.1|2753133_2753868_+	putative methyltransferase YcgJ	NA	A0A1X9I6N4	Streptococcus_phage	100.0	1.5e-141
AXJ65338.1|2753900_2754809_+	Aminoglycoside 6-adenylyltransferase	NA	E4ZFP8	Streptococcus_phage	100.0	2.8e-177
AXJ65339.1|2754805_2755348_+	TDP-fucosamine acetyltransferase	NA	A0A1B0RXL7	Streptococcus_phage	100.0	8.9e-94
AXJ65340.1|2755440_2756235_+	Aminoglycoside 3'-phosphotransferase	NA	E4ZFP6	Streptococcus_phage	100.0	2.3e-154
AXJ65341.1|2756510_2757083_+	bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor	NA	A0A1B0RXM1	Streptococcus_phage	99.5	5.5e-102
AXJ65342.1|2757106_2757463_+	hypothetical protein	NA	A0A1B0RXM3	Streptococcus_phage	99.2	4.2e-60
AXJ65343.1|2757573_2758233_+	5-amino-6-(5-phosphoribosylamino)uracil reductase	NA	A0A1B0RXM8	Streptococcus_phage	100.0	3.1e-125
AXJ65344.1|2758953_2760558_-	Transposase DDE domain protein	NA	A0ZS58	Staphylococcus_virus	44.4	1.1e-128
